RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6952
(168 letters)
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Length = 121
Score = 101 bits (253), Expect = 1e-28
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
IDF SLD++N+ NN+LAF AE+ LGI ++ ++M PD+LS++ YL+QFY++F
Sbjct: 55 IDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFK 114
Query: 63 NQKQG 67
+
Sbjct: 115 DSGPS 119
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 100 bits (251), Expect = 4e-28
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
D+ L +N N E+AF +AE H P LLD EDMV PD + TY+ +FY+ V
Sbjct: 53 FDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLV 112
Query: 63 NQKQGKS 69
+ K+
Sbjct: 113 QKGLVKT 119
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 100 bits (249), Expect = 1e-26
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
ID+A L + + N AF AE++L IP +LDAED+V PD +I+TY+S FY F
Sbjct: 186 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFA 245
Query: 63 NQKQGKSPA 71
+Q ++ A
Sbjct: 246 GAEQAETAA 254
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 95.8 bits (239), Expect = 2e-26
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
+ + + + E AF A+ +LGI LLD ED+ +PD+ SI+ YL+ ++V
Sbjct: 54 FSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAV-RLPDKKSIIMYLTSLFEVLP 112
Query: 63 NQKQ 66
Q
Sbjct: 113 QQVT 116
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 95.0 bits (237), Expect = 3e-26
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
++ + L A + AE LGI ++ A+ +V D L ++ YLS F+ F
Sbjct: 53 LEPSELQGLGALEATAWALKVAENELGITPVVSAQAVVA--GSDPLGLIAYLSHFHSAFK 110
Query: 63 NQKQG 67
+
Sbjct: 111 SGPSS 115
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 93.9 bits (234), Expect = 1e-25
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
ID+ SL+ ++I NN+ A+ +GI LL+ DMV A+PD+L+++TYL Q F
Sbjct: 55 IDYKSLNPQDIKENNKKAY-DGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFS 113
Query: 63 NQKQG 67
+
Sbjct: 114 SGPSS 118
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 93.2 bits (232), Expect = 3e-25
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
+DF SL + N + N + AF AE+ LG+ LLD ED+ PD SI+TY++ +Y F
Sbjct: 53 LDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPEDVNV-DQPDEKSIITYVATYYHYFS 111
Query: 63 NQKQGKSPAR 72
K +
Sbjct: 112 KMKALAVEGK 121
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 91.9 bits (229), Expect = 5e-25
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
IDF L + N + N + AF AE+HLG+ LLD ED+ PD SI+TY+ +Y F
Sbjct: 49 IDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISV-DHPDEKSIITYVVTYYHYF 106
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 85.0 bits (210), Expect = 5e-21
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
ID + ++ N + AF AER LG+ LLD ED+ PD SI+TY+S Y
Sbjct: 179 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDV-PQPDEKSIITYVSSLYDAMP 237
Query: 63 NQKQGK 68
+
Sbjct: 238 RVPGAQ 243
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 84.4 bits (208), Expect = 2e-20
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
ID + ++ N + AF AER LG+ LLD ED+ PD SI+TY+S Y
Sbjct: 235 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDV-PQPDEKSIITYVSSLYDAM 292
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 80.4 bits (198), Expect = 3e-19
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 3 IDFAS-LDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
D+ S + Q++ E AF A LGI LLD ED+ PD+ SIL Y++ +QV
Sbjct: 181 FDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVDT-TYPDKKSILMYITSLFQVL 239
Query: 62 VNQKQ 66
Q
Sbjct: 240 PQQVS 244
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 73.4 bits (179), Expect = 6e-16
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
ID+ L + + +N AF AE++L IP +LDAED+V A PD +I+TY+S FY F
Sbjct: 167 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFS 226
Query: 63 NQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQL 98
++ ++ A V + + + A L
Sbjct: 227 GAQKAETAANRICKVLAVNQENEQLMEDYEKLASDL 262
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 68.9 bits (168), Expect = 8e-15
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV 60
D+ S D +N A + A+ LGIP ++ E++V+ D+ S++TYLSQF +
Sbjct: 214 PDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVD-PNVDKHSVMTYLSQFPKA 270
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 68.1 bits (166), Expect = 1e-14
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV 60
+ D+ S D + N A + A+ LG+P ++ E+++ D S++TYLSQF +
Sbjct: 185 LCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA 243
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 61.5 bits (149), Expect = 4e-12
Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
+ I+ + ++ + E + A++ LG + D+V + L +++ +
Sbjct: 221 IDINMSGFNETDDLKRAESMLQQADK-LGCRQFVTPADVV---SGNPKLNLAFVANLF 274
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 58.2 bits (140), Expect = 1e-10
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 3 IDFASLDQR----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
+++ + + N + R LG L ED+VE ++ IL +
Sbjct: 445 VNWNLVTKGETDDEKRLNATYIV-SVARKLGCSVFLLPEDIVE---VNQKMILILTASIM 500
Query: 59 QVFVNQ 64
+ +
Sbjct: 501 YWSLQR 506
Score = 51.2 bits (122), Expect = 2e-08
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
D A+LD ++ EL AER + L AE++VE L +++Q +
Sbjct: 199 CDPATLDAKDPLERAELVLSHAER-MNCKRYLTAEEIVE---GSSTLNLAFVAQIFHERN 254
Query: 63 NQKQGKSPARCNM 75
+ A M
Sbjct: 255 GLNKDGKYAFAEM 267
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 56.7 bits (136), Expect = 3e-10
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 3 IDFASLDQR----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
+D+ + N LA A R LG + ED+V +L ++
Sbjct: 456 VDYNLVTDGSTEELAIQNARLAISIA-RKLGAVIFILPEDIVA---VRPRLVLHFIGSLM 511
Query: 59 QV 60
V
Sbjct: 512 AV 513
Score = 48.6 bits (115), Expect = 2e-07
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
A L ++ E + AE+ L L MV + L +++ +
Sbjct: 208 CSRAPLQTTDVLQRAEQVLQNAEK-LDCRKYLTPTAMV---AGNPKLNLAFVAHLFNTH 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.34
Identities = 26/177 (14%), Positives = 48/177 (27%), Gaps = 66/177 (37%)
Query: 8 LDQRNIYSNNEL-AF----RT--AERHLGIPALLDAEDMVEYAVPDRLSILTY---LSQF 57
L N+ + AF + R + L A ++ LT S
Sbjct: 250 LL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 58 YQVFVNQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAEG-----S 112
+ +++ + P +V + +S+IAE +
Sbjct: 308 LK-YLDCRPQDLPR----------------EVLTT--------NPRRLSIIAESIRDGLA 342
Query: 113 AWSAY------TVRNIGSSS-----PNSK--------ILPDSPTTPTSPTQVVVLAI 150
W + + I SS P + P S PT +L++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-----LLSL 394
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 28.0 bits (61), Expect = 1.8
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 64 QKQGKSPARCNMFVNSTLRPATHYQVHL--IRSAGQLNLSSLLISMIAEGSAWSAYTVRN 121
+++ + N + L+P Y V L I GQ L S +S+ + + +
Sbjct: 324 KRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQL 383
Query: 122 IGSS-SPNSKILPDSPTTPTSPTQVVVLAIHN 152
+ + LP PT P +V +
Sbjct: 384 VKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQD 415
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 26.2 bits (57), Expect = 5.3
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 63 NQKQGKSPARCNMFVNSTLRPATHYQVHLI-RSAGQLNLSSLLISMIAEGSAWSAYTVRN 121
K+ P N + L+P Y+ LI + S
Sbjct: 45 RWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVT 104
Query: 122 IGSSSPNSKILPDSPTTPTSPTQVVV 147
++ + + T + + VV
Sbjct: 105 GETTPFSPLVATSESVTEITASSFVV 130
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 26.0 bits (58), Expect = 7.1
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 16/59 (27%)
Query: 4 DFASLDQRNIYSNNELAFRTAE-----------RHLGIPALLDAEDMVEYAVPDRLSIL 51
+ A L+ + + L F T R L +PA++ + D IL
Sbjct: 167 ETAQLNLKKV-----LGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLIL 220
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 25.1 bits (55), Expect = 7.3
Identities = 6/40 (15%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 75 MFVNST-LRPATHYQ-VHLIRSAGQLNLSSLLISMIAEGS 112
+ + + T + + L++S G+ + ++S++ E +
Sbjct: 69 VSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDEVT 108
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 26.0 bits (58), Expect = 8.1
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 4 DFASLDQRNIYSNNELAFRTAE-----------RHLGIPALLDAEDMVEYAVPDRLSIL 51
D A L++ + F T R L IPA++ + + + + I+
Sbjct: 169 DTAQLNKEFV-----QGFATNIGGRTSASAIMSRSLEIPAIVGTKSITQEVKQGDMIIV 222
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP:
a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A
2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Length = 258
Score = 25.3 bits (56), Expect = 9.6
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 16/59 (27%)
Query: 4 DFASLDQRNIYSNNELAFRTAE-----------RHLGIPALLDAEDMVEYAVPDRLSIL 51
+ A L+ + + L F T R L +PA++ + D IL
Sbjct: 167 ETAQLNLKKV-----LGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLIL 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.383
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,422,952
Number of extensions: 127160
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 29
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)