RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6952
(168 letters)
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 77.2 bits (190), Expect = 1e-19
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV 60
+ + + + E AF A+ +LGI LLD ED+ +PD+ SI+ YL+ ++V
Sbjct: 51 FSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAV-RLPDKKSIIMYLTSLFEV 107
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 74.6 bits (183), Expect = 1e-18
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
ID + ++ N + AF AER LG+ LLD ED+ PD SI+TY+S Y
Sbjct: 52 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDV-PQPDEKSIITYVSSLYDAM 109
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 70.7 bits (173), Expect = 5e-17
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
+ + Q++ E AF A LGI LLD ED+ PD+ SIL Y++ +QV
Sbjct: 63 DWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVDT-TYPDKKSILMYITSLFQVLP 121
Query: 63 NQKQ 66
Q
Sbjct: 122 QQVS 125
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 67.7 bits (165), Expect = 6e-16
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
IDF L + N + N + AF AE+HLG+ LLD ED+ PD SI+TY+ +Y F
Sbjct: 48 IDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDIS-VDHPDEKSIITYVVTYYHYF 105
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 57.3 bits (138), Expect = 7e-11
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 3 IDFASLDQRNI----YSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
+++ + + N + R LG L ED+VE ++ IL +
Sbjct: 439 VNWNLVTKGETDDEKRLNATYIV-SVARKLGCSVFLLPEDIVE---VNQKMILILTASIM 494
Query: 59 QVFVNQ 64
+ +
Sbjct: 495 YWSLQR 500
Score = 55.4 bits (133), Expect = 4e-10
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
D A+LD ++ EL AER + L AE++VE L +++Q +
Sbjct: 193 CDPATLDAKDPLERAELVLSHAER-MNCKRYLTAEEIVE---GSSTLNLAFVAQIFHERN 248
Query: 63 NQKQ 66
+
Sbjct: 249 GLNK 252
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 52.4 bits (125), Expect = 3e-09
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 3 IDFASLDQRN----IYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
+D+ + + N LA A R LG + ED+V +L ++
Sbjct: 448 VDYNLVTDGSTEELAIQNARLAISIA-RKLGAVIFILPEDIVA---VRPRLVLHFIGSLM 503
Query: 59 QV 60
V
Sbjct: 504 AV 505
Score = 50.8 bits (121), Expect = 1e-08
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
A L ++ E + AE L L MV + L +++ +
Sbjct: 200 CSRAPLQTTDVLQRAEQVLQNAE-KLDCRKYLTPTAMVA---GNPKLNLAFVAHLFNTH 254
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 40.4 bits (94), Expect = 1e-05
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 2 KIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
+ +L + + ++N + A + R +G ED+VE ++T +
Sbjct: 59 LVKSGNLTEDDKHNNAKYAV-SMARRIGARVYALPEDLVE---VKPKMVMTVFACLMGRG 114
Query: 62 VNQKQGKS 69
+ + G S
Sbjct: 115 MKRVSGPS 122
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 38.1 bits (88), Expect = 7e-05
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
+ I+ + ++ + E + A+ LG + D+V + L +++ +
Sbjct: 62 IDINMSGFNETDDLKRAESMLQQAD-KLGCRQFVTPADVVS---GNPKLNLAFVANLF 115
>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 150
Score = 25.3 bits (55), Expect = 3.4
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 31 PALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPARCNMFVNSTLRPATHYQVH 90
P L + +E+A P L +++ G + + N L +++
Sbjct: 4 PMGLMGFEFIEFASPT----PGTLEPIFEIM-----GFTKVATHRSKNVHLY--RQGEIN 52
Query: 91 LIRSAGQLNLSSLLISMIAEGSAWSAYTVRNI 122
LI + +++S + A+ V++
Sbjct: 53 LILNNEPNSIASYFAAEHGPSVCGMAFRVKDS 84
>d1kzfa_ d.108.1.3 (A:) Acyl-homoserinelactone synthase EsaI
{Pantoea stewartii subsp. stewartii [TaxId: 66271]}
Length = 210
Score = 24.2 bits (52), Expect = 8.7
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 58 YQVFVNQKQGKSPARCNMFVNSTLRPATHYQVHL 91
+ F ++ + M + P T Y + +
Sbjct: 25 KKTFSDRLGWEVICSQGMESDEFDGPGTRYILGI 58
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
{Escherichia coli [TaxId: 562]}
Length = 456
Score = 24.5 bits (52), Expect = 9.4
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 56 QFYQVFVNQKQGKSPARCNMFVNSTLRPATHYQVHLIR 93
+ ++++ N F N+ L PA HY++ L++
Sbjct: 61 TWASFNLSEQDLDE--YYNQFSNAVLWPAFHYRLDLVQ 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.383
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 573,164
Number of extensions: 22946
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 16
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)