Query psy6962
Match_columns 88
No_of_seqs 103 out of 1618
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 23:13:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 5.8E-18 1.3E-22 100.5 9.2 63 25-87 31-93 (144)
2 KOG0149|consensus 99.7 2.8E-17 6E-22 102.6 6.6 60 28-87 12-71 (247)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.2E-16 4.7E-21 104.3 8.4 60 28-87 3-62 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.8E-16 8.3E-21 103.1 9.3 60 28-87 269-328 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 7.8E-16 1.7E-20 102.2 9.9 64 24-87 103-166 (346)
6 PF00076 RRM_1: RNA recognitio 99.7 6.8E-16 1.5E-20 80.4 7.4 56 31-87 1-56 (70)
7 KOG0126|consensus 99.6 4.1E-17 8.9E-22 98.9 0.4 78 4-82 12-89 (219)
8 KOG0122|consensus 99.6 1.4E-15 3E-20 95.6 7.1 62 26-87 187-248 (270)
9 TIGR01659 sex-lethal sex-letha 99.6 3.2E-15 7E-20 99.3 9.3 61 27-87 192-252 (346)
10 PF14259 RRM_6: RNA recognitio 99.6 6.2E-15 1.3E-19 77.2 7.6 56 31-87 1-56 (70)
11 KOG0144|consensus 99.6 3.3E-15 7.1E-20 100.0 6.0 69 20-88 26-94 (510)
12 TIGR01645 half-pint poly-U bin 99.6 7.4E-15 1.6E-19 102.9 7.8 61 27-87 106-166 (612)
13 KOG0121|consensus 99.6 4E-15 8.7E-20 85.9 5.0 63 25-87 33-95 (153)
14 TIGR01648 hnRNP-R-Q heterogene 99.6 2.2E-14 4.7E-19 100.2 9.3 61 26-87 56-116 (578)
15 TIGR01622 SF-CC1 splicing fact 99.6 3.1E-14 6.6E-19 97.0 8.5 61 27-87 88-148 (457)
16 TIGR01645 half-pint poly-U bin 99.5 3.1E-14 6.7E-19 99.9 7.9 61 27-87 203-263 (612)
17 TIGR01628 PABP-1234 polyadenyl 99.5 4.1E-14 8.8E-19 98.7 7.9 58 30-87 2-59 (562)
18 PLN03120 nucleic acid binding 99.5 7.3E-14 1.6E-18 89.2 7.7 57 28-87 4-60 (260)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.2E-13 2.6E-18 95.0 9.1 61 27-87 294-354 (509)
20 PLN03121 nucleic acid binding 99.5 1.1E-13 2.4E-18 87.3 7.8 59 26-87 3-61 (243)
21 KOG0113|consensus 99.5 9.7E-14 2.1E-18 89.4 7.6 61 26-86 99-159 (335)
22 KOG0117|consensus 99.5 9.9E-14 2.1E-18 93.3 7.4 77 11-87 65-142 (506)
23 TIGR01622 SF-CC1 splicing fact 99.5 3.1E-13 6.7E-18 92.1 8.1 61 27-87 185-245 (457)
24 KOG0131|consensus 99.5 1.3E-13 2.8E-18 83.7 4.9 62 26-87 7-68 (203)
25 KOG0148|consensus 99.5 2.3E-13 5.1E-18 86.9 6.3 58 30-87 64-121 (321)
26 smart00362 RRM_2 RNA recogniti 99.4 7E-13 1.5E-17 68.3 7.0 56 30-87 1-56 (72)
27 COG0724 RNA-binding proteins ( 99.4 1.2E-12 2.5E-17 82.0 8.8 60 28-87 115-174 (306)
28 TIGR01628 PABP-1234 polyadenyl 99.4 5.6E-13 1.2E-17 93.0 8.0 60 27-87 284-343 (562)
29 KOG0144|consensus 99.4 1.1E-13 2.5E-18 92.7 3.7 60 27-87 123-182 (510)
30 smart00360 RRM RNA recognition 99.4 1.2E-12 2.6E-17 67.2 6.3 55 33-87 1-55 (71)
31 KOG0127|consensus 99.4 1.1E-12 2.3E-17 90.3 6.7 60 28-87 292-351 (678)
32 PLN03213 repressor of silencin 99.4 1.4E-12 3.1E-17 89.2 7.2 57 27-87 9-67 (759)
33 KOG0125|consensus 99.4 1.1E-12 2.5E-17 85.5 6.4 61 25-87 93-153 (376)
34 KOG0111|consensus 99.4 3.8E-13 8.2E-18 84.0 2.7 64 24-87 6-69 (298)
35 KOG0148|consensus 99.4 3.3E-12 7.1E-17 81.7 6.8 60 22-87 158-217 (321)
36 KOG0146|consensus 99.3 1.3E-12 2.8E-17 83.7 4.7 60 27-87 18-77 (371)
37 cd00590 RRM RRM (RNA recogniti 99.3 1.3E-11 2.7E-16 63.8 7.4 57 30-87 1-57 (74)
38 KOG0130|consensus 99.3 3.3E-12 7.1E-17 74.6 5.5 66 22-87 66-131 (170)
39 KOG0107|consensus 99.3 2.9E-12 6.3E-17 77.4 5.3 56 27-87 9-64 (195)
40 KOG0124|consensus 99.3 1.2E-12 2.7E-17 86.8 3.4 59 29-87 114-172 (544)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 7.8E-12 1.7E-16 86.2 7.0 54 28-87 2-55 (481)
42 KOG0145|consensus 99.3 2.2E-12 4.8E-17 82.4 3.5 61 27-87 126-186 (360)
43 KOG0108|consensus 99.3 6.4E-12 1.4E-16 85.5 5.9 59 29-87 19-77 (435)
44 KOG4207|consensus 99.3 7.2E-12 1.6E-16 77.6 4.6 61 27-87 12-72 (256)
45 KOG0114|consensus 99.3 4.1E-11 8.9E-16 67.1 6.8 61 24-87 14-74 (124)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 4.4E-11 9.6E-16 82.5 7.9 56 27-87 274-330 (481)
47 KOG4205|consensus 99.2 1.8E-11 4E-16 80.3 5.3 61 27-87 5-65 (311)
48 KOG0105|consensus 99.2 1.8E-11 4E-16 74.8 4.8 58 27-87 5-62 (241)
49 KOG0145|consensus 99.2 8.6E-11 1.9E-15 75.2 6.6 62 26-87 39-100 (360)
50 KOG4212|consensus 99.2 1.1E-10 2.3E-15 79.1 6.7 59 28-87 44-103 (608)
51 KOG0131|consensus 99.2 1.8E-11 3.9E-16 74.4 2.8 63 26-88 94-157 (203)
52 KOG0123|consensus 99.2 1.2E-10 2.5E-15 78.3 6.6 54 31-87 79-132 (369)
53 TIGR01648 hnRNP-R-Q heterogene 99.1 2E-10 4.3E-15 80.7 7.3 53 27-87 232-286 (578)
54 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2.3E-10 5E-15 78.9 7.4 57 25-87 172-240 (509)
55 KOG0147|consensus 99.1 4E-11 8.8E-16 82.3 3.6 57 31-87 281-337 (549)
56 KOG0146|consensus 99.1 2.7E-10 5.9E-15 73.2 5.5 64 24-87 281-344 (371)
57 smart00361 RRM_1 RNA recogniti 99.1 6E-10 1.3E-14 58.5 5.7 46 42-87 2-54 (70)
58 KOG0124|consensus 99.1 4.1E-10 8.9E-15 75.0 5.5 60 28-87 210-269 (544)
59 KOG0415|consensus 99.0 3.1E-10 6.7E-15 75.2 4.6 60 27-86 238-297 (479)
60 KOG0127|consensus 99.0 6.2E-10 1.4E-14 77.0 5.6 59 29-87 6-64 (678)
61 KOG0117|consensus 99.0 1.5E-09 3.3E-14 73.5 5.9 76 4-87 227-310 (506)
62 KOG4205|consensus 98.9 3.8E-09 8.1E-14 69.5 6.5 59 28-86 97-155 (311)
63 KOG4208|consensus 98.9 7.7E-09 1.7E-13 64.0 6.4 58 29-86 50-108 (214)
64 KOG0109|consensus 98.8 3.1E-09 6.8E-14 68.8 3.3 51 29-87 3-53 (346)
65 KOG0110|consensus 98.8 3.5E-09 7.7E-14 74.8 3.7 60 28-87 613-672 (725)
66 KOG4661|consensus 98.8 1.9E-08 4.1E-13 70.4 7.0 60 28-87 405-464 (940)
67 KOG0123|consensus 98.8 2E-08 4.3E-13 67.6 6.3 62 25-87 267-328 (369)
68 KOG0116|consensus 98.8 1.1E-08 2.3E-13 69.7 5.0 59 29-87 289-347 (419)
69 PF13893 RRM_5: RNA recognitio 98.7 4E-08 8.6E-13 49.2 4.5 38 45-87 1-38 (56)
70 KOG4206|consensus 98.6 7.7E-08 1.7E-12 60.3 5.2 56 29-87 10-69 (221)
71 KOG0132|consensus 98.6 6.9E-08 1.5E-12 69.2 5.1 55 27-87 420-474 (894)
72 KOG4212|consensus 98.6 7E-08 1.5E-12 65.8 4.5 57 26-87 534-590 (608)
73 KOG4209|consensus 98.6 8.2E-08 1.8E-12 61.0 4.5 64 24-87 97-160 (231)
74 KOG0533|consensus 98.6 1.8E-07 3.8E-12 59.8 5.9 61 26-87 81-141 (243)
75 KOG0153|consensus 98.6 9.3E-08 2E-12 63.2 4.7 55 27-87 227-281 (377)
76 KOG0109|consensus 98.6 4.8E-08 1E-12 63.4 3.2 55 25-87 75-129 (346)
77 PF04059 RRM_2: RNA recognitio 98.6 7.2E-07 1.6E-11 49.7 7.1 57 29-85 2-60 (97)
78 KOG0226|consensus 98.5 2.9E-07 6.2E-12 58.9 5.3 62 26-87 188-249 (290)
79 KOG4454|consensus 98.5 5.5E-08 1.2E-12 61.0 2.0 61 25-87 6-66 (267)
80 KOG0110|consensus 98.5 2.6E-07 5.7E-12 65.6 5.1 57 31-87 518-577 (725)
81 KOG1457|consensus 98.3 5.8E-06 1.3E-10 52.3 7.1 61 27-87 33-94 (284)
82 KOG4660|consensus 98.3 1.3E-06 2.8E-11 60.7 4.6 56 27-87 74-129 (549)
83 KOG0106|consensus 98.2 1.1E-06 2.5E-11 55.2 3.3 51 29-87 2-52 (216)
84 KOG0151|consensus 98.2 3.7E-06 8E-11 60.2 4.8 63 25-87 171-236 (877)
85 KOG4211|consensus 98.1 1.7E-05 3.7E-10 54.8 7.3 58 27-87 9-66 (510)
86 KOG0147|consensus 98.1 7.4E-07 1.6E-11 61.8 0.4 62 27-88 178-239 (549)
87 KOG1548|consensus 98.1 1.5E-05 3.2E-10 53.1 5.7 58 29-87 135-200 (382)
88 KOG4849|consensus 98.0 3E-06 6.5E-11 56.6 1.9 57 30-86 82-140 (498)
89 KOG1457|consensus 97.9 9.2E-06 2E-10 51.4 3.0 56 28-87 210-265 (284)
90 KOG0120|consensus 97.9 1.6E-05 3.4E-10 55.4 4.3 61 27-87 288-348 (500)
91 KOG0129|consensus 97.9 3.3E-05 7.1E-10 53.6 5.4 59 27-86 258-322 (520)
92 KOG4211|consensus 97.9 7.6E-05 1.6E-09 51.6 7.0 61 27-88 102-163 (510)
93 PF08777 RRM_3: RNA binding mo 97.9 3.8E-05 8.3E-10 43.4 4.6 52 30-87 3-54 (105)
94 KOG4210|consensus 97.9 9E-06 2E-10 53.3 2.0 60 28-87 184-244 (285)
95 KOG1995|consensus 97.8 4.4E-05 9.5E-10 50.9 4.8 63 25-87 63-133 (351)
96 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00048 1.1E-08 34.2 5.1 51 30-87 3-53 (53)
97 KOG0129|consensus 97.5 0.00056 1.2E-08 47.7 6.4 66 22-87 364-430 (520)
98 KOG4206|consensus 97.4 0.00069 1.5E-08 42.8 5.9 57 25-86 143-199 (221)
99 KOG1855|consensus 97.4 0.00026 5.6E-09 48.5 3.8 72 15-86 216-302 (484)
100 KOG0128|consensus 97.3 9.9E-06 2.1E-10 58.9 -3.8 60 29-88 668-727 (881)
101 KOG0128|consensus 97.2 0.00019 4E-09 52.5 2.1 60 28-88 736-795 (881)
102 KOG1190|consensus 97.2 0.0006 1.3E-08 46.6 4.2 53 27-85 27-79 (492)
103 KOG1365|consensus 97.2 0.0031 6.7E-08 43.1 7.5 60 28-88 161-224 (508)
104 KOG2314|consensus 97.1 0.00079 1.7E-08 47.7 3.9 58 29-87 59-122 (698)
105 KOG0106|consensus 97.0 0.00051 1.1E-08 43.4 2.3 53 27-87 98-150 (216)
106 KOG3152|consensus 96.9 0.00059 1.3E-08 44.0 1.9 58 28-85 74-143 (278)
107 KOG0105|consensus 96.7 0.0076 1.6E-07 37.6 5.3 53 28-87 115-167 (241)
108 PF11608 Limkain-b1: Limkain b 96.6 0.0074 1.6E-07 32.9 4.3 49 29-87 3-56 (90)
109 KOG4307|consensus 96.5 0.011 2.4E-07 43.2 5.9 60 28-87 867-926 (944)
110 KOG1365|consensus 96.4 0.0046 9.9E-08 42.3 3.5 59 28-87 280-341 (508)
111 PF08675 RNA_bind: RNA binding 96.4 0.036 7.7E-07 30.2 6.3 49 29-86 10-58 (87)
112 KOG0115|consensus 96.2 0.0052 1.1E-07 39.8 2.8 57 29-86 32-88 (275)
113 COG5175 MOT2 Transcriptional r 96.2 0.011 2.3E-07 39.9 4.3 58 31-88 117-183 (480)
114 KOG2416|consensus 95.6 0.01 2.2E-07 42.5 2.5 55 26-86 442-497 (718)
115 KOG1190|consensus 95.6 0.042 9.2E-07 37.9 5.2 57 27-87 413-469 (492)
116 KOG4307|consensus 95.5 0.018 3.8E-07 42.2 3.4 60 27-87 433-493 (944)
117 KOG1548|consensus 95.5 0.037 8.1E-07 37.3 4.6 57 27-87 264-331 (382)
118 KOG4676|consensus 95.3 0.019 4.1E-07 39.4 2.8 58 29-86 8-68 (479)
119 PF10309 DUF2414: Protein of u 95.2 0.19 4.2E-06 25.8 5.9 51 29-87 6-59 (62)
120 KOG1456|consensus 94.9 0.2 4.3E-06 34.5 6.7 56 27-87 286-342 (494)
121 KOG2193|consensus 94.8 0.027 5.8E-07 39.1 2.6 52 30-87 3-54 (584)
122 PF05172 Nup35_RRM: Nup53/35/4 94.6 0.15 3.2E-06 28.6 4.7 59 28-87 6-71 (100)
123 KOG0112|consensus 94.3 0.059 1.3E-06 40.4 3.4 56 26-87 453-508 (975)
124 KOG1456|consensus 93.8 0.29 6.3E-06 33.7 5.7 55 27-87 30-84 (494)
125 KOG4483|consensus 93.8 0.28 6.1E-06 34.0 5.6 55 27-88 390-445 (528)
126 KOG0120|consensus 93.6 0.16 3.5E-06 36.0 4.5 44 44-87 425-471 (500)
127 KOG4210|consensus 93.5 0.047 1E-06 36.0 1.6 62 27-88 87-148 (285)
128 KOG2591|consensus 92.8 0.49 1.1E-05 34.2 5.8 53 27-86 174-228 (684)
129 KOG2068|consensus 92.8 0.078 1.7E-06 35.5 1.8 59 29-87 78-142 (327)
130 PF07576 BRAP2: BRCA1-associat 91.0 1.8 4E-05 24.6 8.2 56 28-85 13-69 (110)
131 KOG0112|consensus 90.6 0.064 1.4E-06 40.2 -0.3 53 26-79 370-422 (975)
132 KOG2253|consensus 90.0 0.24 5.1E-06 36.1 2.1 56 23-87 35-90 (668)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 89.9 0.61 1.3E-05 28.6 3.6 58 27-84 6-69 (176)
134 KOG4410|consensus 89.1 0.67 1.5E-05 30.9 3.5 48 29-81 331-378 (396)
135 KOG1996|consensus 87.2 1.9 4E-05 29.0 4.6 45 43-87 301-346 (378)
136 KOG2202|consensus 87.2 0.15 3.3E-06 33.1 -0.3 43 44-87 84-127 (260)
137 PF15023 DUF4523: Protein of u 84.3 1.8 3.9E-05 26.1 3.2 52 29-87 87-142 (166)
138 KOG4285|consensus 82.2 11 0.00024 25.5 6.5 50 31-87 200-249 (350)
139 KOG4660|consensus 82.2 0.8 1.7E-05 32.8 1.3 56 30-85 390-446 (549)
140 KOG0804|consensus 75.7 27 0.00058 25.0 7.0 55 28-84 74-129 (493)
141 PF10567 Nab6_mRNP_bdg: RNA-re 73.8 8.9 0.00019 25.8 4.2 57 27-83 14-77 (309)
142 COG0724 RNA-binding proteins ( 70.8 12 0.00025 23.0 4.2 50 25-74 222-271 (306)
143 KOG2891|consensus 70.7 6 0.00013 26.6 2.9 34 28-61 149-194 (445)
144 PF09707 Cas_Cas2CT1978: CRISP 67.0 17 0.00036 19.9 3.7 46 29-77 26-71 (86)
145 PF15513 DUF4651: Domain of un 65.6 17 0.00037 18.6 4.0 18 43-60 9-26 (62)
146 KOG4008|consensus 63.3 8.2 0.00018 25.2 2.4 33 25-57 37-69 (261)
147 PRK11558 putative ssRNA endonu 60.5 23 0.00051 19.8 3.6 48 29-79 28-75 (97)
148 PF11767 SET_assoc: Histone ly 57.7 26 0.00055 18.1 3.9 39 39-86 11-49 (66)
149 PF08952 DUF1866: Domain of un 55.9 36 0.00077 20.5 4.1 36 44-87 52-87 (146)
150 PF03468 XS: XS domain; Inter 54.4 34 0.00075 19.6 3.8 36 41-79 30-65 (116)
151 KOG4454|consensus 53.7 2.7 5.8E-05 27.2 -0.9 52 26-78 78-133 (267)
152 PF07292 NID: Nmi/IFP 35 domai 52.9 10 0.00022 20.8 1.4 25 26-50 50-74 (88)
153 KOG2318|consensus 51.3 24 0.00052 26.0 3.3 39 25-63 171-214 (650)
154 PF04847 Calcipressin: Calcipr 50.0 37 0.00081 21.1 3.7 40 41-86 8-47 (184)
155 PF15063 TC1: Thyroid cancer p 49.1 13 0.00027 19.9 1.3 29 27-55 24-52 (79)
156 KOG2135|consensus 43.3 10 0.00022 27.1 0.6 45 33-83 377-422 (526)
157 PF03439 Spt5-NGN: Early trans 42.2 30 0.00064 18.5 2.2 19 69-87 43-61 (84)
158 PHA01632 hypothetical protein 40.2 39 0.00085 17.0 2.2 21 31-51 19-39 (64)
159 PF00398 RrnaAD: Ribosomal RNA 37.8 38 0.00083 21.9 2.5 34 28-61 97-132 (262)
160 PF11411 DNA_ligase_IV: DNA li 37.6 31 0.00066 15.7 1.5 16 38-53 19-34 (36)
161 TIGR01873 cas_CT1978 CRISPR-as 37.3 73 0.0016 17.4 3.5 48 29-79 26-74 (87)
162 PF06296 DUF1044: Protein of u 36.7 66 0.0014 18.6 3.1 24 53-77 41-64 (120)
163 COG0030 KsgA Dimethyladenosine 36.2 55 0.0012 21.6 3.0 27 29-55 96-122 (259)
164 PF14401 RLAN: RimK-like ATPgr 35.7 1E+02 0.0022 18.6 3.9 52 29-80 88-140 (153)
165 COG5193 LHP1 La protein, small 32.2 21 0.00045 25.2 0.6 59 29-87 175-243 (438)
166 PRK11901 hypothetical protein; 31.8 1.2E+02 0.0027 20.8 4.1 55 32-87 246-301 (327)
167 PRK10905 cell division protein 31.4 1.5E+02 0.0032 20.4 4.4 52 35-87 251-303 (328)
168 PF07230 Peptidase_S80: Bacter 31.1 80 0.0017 23.0 3.3 36 31-70 281-316 (501)
169 PF05189 RTC_insert: RNA 3'-te 30.2 1E+02 0.0022 16.9 3.2 47 31-77 13-64 (103)
170 TIGR00755 ksgA dimethyladenosi 29.5 99 0.0022 19.8 3.4 25 30-54 96-120 (253)
171 PRK15464 cold shock-like prote 27.9 80 0.0017 16.3 2.3 10 69-78 15-24 (70)
172 PF08206 OB_RNB: Ribonuclease 27.6 48 0.001 16.2 1.4 11 69-79 7-17 (58)
173 PHA02531 20 portal vertex prot 26.7 60 0.0013 23.6 2.1 37 30-70 283-319 (514)
174 PRK00274 ksgA 16S ribosomal RN 25.8 1.1E+02 0.0024 19.9 3.2 22 30-51 107-128 (272)
175 PRK10943 cold shock-like prote 25.7 88 0.0019 16.0 2.2 10 69-78 14-23 (69)
176 KOG0156|consensus 25.1 1.2E+02 0.0027 21.8 3.5 46 32-86 36-84 (489)
177 cd01212 JIP JNK-interacting pr 23.6 1.6E+02 0.0034 17.7 3.3 29 60-88 97-125 (148)
178 PF14268 YoaP: YoaP-like 23.2 95 0.0021 14.7 1.9 15 72-86 2-16 (44)
179 KOG0738|consensus 23.1 1E+02 0.0022 22.1 2.7 22 27-48 349-373 (491)
180 PF15407 Spo7_2_N: Sporulation 23.1 62 0.0013 16.7 1.3 25 25-49 24-48 (67)
181 PF04026 SpoVG: SpoVG; InterP 22.8 1.4E+02 0.0031 16.1 4.2 25 55-79 3-27 (84)
182 PRK15463 cold shock-like prote 22.0 52 0.0011 17.0 0.9 10 69-78 15-24 (70)
183 KOG4574|consensus 21.7 41 0.00088 26.2 0.6 51 30-86 300-350 (1007)
184 KOG0291|consensus 21.3 57 0.0012 25.1 1.3 19 69-87 380-398 (893)
185 PF07045 DUF1330: Protein of u 21.2 1.2E+02 0.0026 15.0 2.2 19 68-86 37-55 (65)
186 PRK09937 stationary phase/star 20.9 58 0.0013 17.0 1.0 9 69-77 12-20 (74)
187 PF13046 DUF3906: Protein of u 20.9 1.4E+02 0.0031 15.4 2.7 32 42-73 32-63 (64)
188 PRK13259 regulatory protein Sp 20.8 1.7E+02 0.0037 16.3 4.0 24 56-79 4-27 (94)
189 cd00027 BRCT Breast Cancer Sup 20.3 1.2E+02 0.0025 14.1 3.1 26 29-54 2-27 (72)
190 PRK09507 cspE cold shock prote 20.2 56 0.0012 16.7 0.8 11 69-79 14-24 (69)
191 PRK14998 cold shock-like prote 20.0 62 0.0013 16.9 1.0 10 69-78 12-21 (73)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=5.8e-18 Score=100.46 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=59.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.++++|+.||
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al 93 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 445678999999999999999999999999999999999999999999999999999999987
No 2
>KOG0149|consensus
Probab=99.71 E-value=2.8e-17 Score=102.61 Aligned_cols=60 Identities=28% Similarity=0.485 Sum_probs=57.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
-.+||||+|+|++..+.|++.|++||+|....++.|+.+|+++||+||.|.+.++|+.|+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc 71 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRAC 71 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999999986
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=2.2e-16 Score=104.25 Aligned_cols=60 Identities=23% Similarity=0.476 Sum_probs=58.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+|||+|||..+++++|+++|+.||+|..++++.++.+|+++|||||+|.+.++|+.||
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai 62 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAV 62 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHH
Confidence 578999999999999999999999999999999999989999999999999999999997
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=3.8e-16 Score=103.09 Aligned_cols=60 Identities=30% Similarity=0.393 Sum_probs=57.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...|||+|||+++++++|+++|++||.|..++++.++.+++++|||||.|.+.++|+.||
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 347999999999999999999999999999999999999999999999999999999987
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=7.8e-16 Score=102.24 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=59.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||++||+++++++|+++|..||.|..|+|+.+..+++++|||||+|.++++|+.||
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai 166 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAI 166 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHH
Confidence 3345679999999999999999999999999999999999889999999999999999999987
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=6.8e-16 Score=80.41 Aligned_cols=56 Identities=27% Similarity=0.621 Sum_probs=53.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 31 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 31 l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
|||+|||+++++++|+++|+.||.+..+.+..+ .++..+|+|||.|.++++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~ 56 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKAL 56 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHH
Confidence 799999999999999999999999999999988 48999999999999999999986
No 7
>KOG0126|consensus
Probab=99.63 E-value=4.1e-17 Score=98.86 Aligned_cols=78 Identities=29% Similarity=0.425 Sum_probs=68.5
Q ss_pred CCCccceeeeeccCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHH
Q psy6962 4 RINPLMFSLVCFRSMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDF 82 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~ 82 (88)
+|+.+++++++.. ..+|.+.-.++..|||||||++.++.+|-.+|++||.+..|.+++|+.||+++||||+.|.+.-+
T Consensus 12 ~lne~Elq~g~~~-~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRS 89 (219)
T KOG0126|consen 12 KLNERELQLGIAD-KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRS 89 (219)
T ss_pred HhhHHhhcccccc-ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccc
Confidence 6778888888665 34566666788999999999999999999999999999999999999999999999999987544
No 8
>KOG0122|consensus
Probab=99.63 E-value=1.4e-15 Score=95.63 Aligned_cols=62 Identities=29% Similarity=0.428 Sum_probs=59.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..+|-|.||+.++++.+|.++|.+||.+..+.+.+++.||.++|||||.|.+.++|++||
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI 248 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAI 248 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999998
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=3.2e-15 Score=99.31 Aligned_cols=61 Identities=26% Similarity=0.566 Sum_probs=58.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+.+++++|+++|++||.|..+.++.++.+++++||+||+|.+.++|++||
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 4568999999999999999999999999999999999889999999999999999999997
No 10
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=6.2e-15 Score=77.24 Aligned_cols=56 Identities=25% Similarity=0.548 Sum_probs=51.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 31 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 31 l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
|||+|||+++++++|+++|..+|.|..+.+..++. +.++|+|||+|.++++|..|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al 56 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRAL 56 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHH
Confidence 79999999999999999999999999999999886 999999999999999999886
No 11
>KOG0144|consensus
Probab=99.58 E-value=3.3e-15 Score=100.02 Aligned_cols=69 Identities=43% Similarity=0.729 Sum_probs=62.7
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 20 LPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 20 ~~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
....++.+..++|||.+|..++|.+|+.+|++||.|..|.+++|+-++.++|||||.|++.++|.+||+
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~ 94 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAIN 94 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHH
Confidence 334445667899999999999999999999999999999999999999999999999999999999874
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.58 E-value=7.4e-15 Score=102.91 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=58.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|||+|||+.+++++|+++|..||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai 166 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLAL 166 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999987
No 13
>KOG0121|consensus
Probab=99.57 E-value=4e-15 Score=85.85 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=58.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+.+||||||++.++++++.++|+++|+|..|.+-.|+.+..+-|||||+|.+.++|..|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHH
Confidence 345689999999999999999999999999999999999988889999999999999999886
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=2.2e-14 Score=100.24 Aligned_cols=61 Identities=25% Similarity=0.522 Sum_probs=57.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|+.||.|..++|++| .+|+++|||||+|.++++|+.||
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai 116 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAV 116 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHH
Confidence 34578999999999999999999999999999999999 59999999999999999999987
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=3.1e-14 Score=96.97 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=58.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|||+|||..+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al 148 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL 148 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH
Confidence 4578999999999999999999999999999999999989999999999999999999997
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.54 E-value=3.1e-14 Score=99.86 Aligned_cols=61 Identities=16% Similarity=0.354 Sum_probs=58.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+++++++|+++|+.||.|..+++..++.+++++|||||+|.+.++|..||
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 3468999999999999999999999999999999999888999999999999999999987
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=4.1e-14 Score=98.65 Aligned_cols=58 Identities=26% Similarity=0.442 Sum_probs=56.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.|||+|||+++++++|+++|+.||.|..|+++++..+++++|||||+|.+.++|+.||
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al 59 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERAL 59 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 6999999999999999999999999999999999989999999999999999999997
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=7.3e-14 Score=89.17 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=52.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||+|||+.+++++|+++|+.||.|..+.|+.++. ++|||||.|.++++|..||
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al 60 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL 60 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH
Confidence 47899999999999999999999999999999988762 5799999999999999886
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.51 E-value=1.2e-13 Score=95.04 Aligned_cols=61 Identities=20% Similarity=0.444 Sum_probs=57.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+.+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|+.||
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~ 354 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAI 354 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHH
Confidence 3468999999999999999999999999999999999889999999999999999999987
No 20
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=87.32 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=53.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+...+|||+||++.+++++|+++|+.||.|..|.|+.+. +.+|||||+|.++++|..||
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl 61 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV 61 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH
Confidence 345789999999999999999999999999999999874 45689999999999999886
No 21
>KOG0113|consensus
Probab=99.51 E-value=9.7e-14 Score=89.45 Aligned_cols=61 Identities=28% Similarity=0.467 Sum_probs=56.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
..-++|||+-|+.++++..|+..|+.||+|..|.|+.+..||+++|||||+|.++.+-.+|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~A 159 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAA 159 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999998776554
No 22
>KOG0117|consensus
Probab=99.50 E-value=9.9e-14 Score=93.28 Aligned_cols=77 Identities=25% Similarity=0.421 Sum_probs=67.1
Q ss_pred eeeeccCCCCCCCCC-CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 11 SLVCFRSMSLPEQPD-PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+.++-++.+.++.+. +..+-||||.||.+..+++|..+|++.|+|..++|++|+.+|.++|||||.|.+.++|+.||
T Consensus 65 qrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Ai 142 (506)
T KOG0117|consen 65 QRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAI 142 (506)
T ss_pred ccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHH
Confidence 444556666665443 34567999999999999999999999999999999999999999999999999999999997
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=3.1e-13 Score=92.08 Aligned_cols=61 Identities=25% Similarity=0.540 Sum_probs=58.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||..+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|..|+
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 3578999999999999999999999999999999999988999999999999999999986
No 24
>KOG0131|consensus
Probab=99.45 E-value=1.3e-13 Score=83.65 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=59.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..+||||||+..++++.|.++|-+.|+|..+.+++++.+.+++||||++|.++|+|+-||
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAi 68 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAI 68 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999886
No 25
>KOG0148|consensus
Probab=99.45 E-value=2.3e-13 Score=86.87 Aligned_cols=58 Identities=31% Similarity=0.530 Sum_probs=56.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
-+||+-|...++.++|++.|.+||+|..+++++|..|+|+|||+||.|...++|+.||
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI 121 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAI 121 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999998
No 26
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=7e-13 Score=68.31 Aligned_cols=56 Identities=29% Similarity=0.616 Sum_probs=51.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+|||+|||..+++++|+++|..||.+..+.+..++ +.++|++|++|.+.++|+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~ 56 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAI 56 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHH
Confidence 48999999999999999999999999999888776 788999999999999999886
No 27
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=1.2e-12 Score=82.04 Aligned_cols=60 Identities=28% Similarity=0.574 Sum_probs=57.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+|||+|||+.+++++|.++|..||.+..+.+..++.+++++|||||.|.+.+.|..||
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~ 174 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAI 174 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHH
Confidence 489999999999999999999999999999999999889999999999999999999887
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.44 E-value=5.6e-13 Score=92.99 Aligned_cols=60 Identities=18% Similarity=0.399 Sum_probs=56.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+||+.++++++|+++|+.||.|..++++.+. +|+++|||||.|.+.++|++||
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~ 343 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAV 343 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHH
Confidence 45679999999999999999999999999999999994 8999999999999999999987
No 29
>KOG0144|consensus
Probab=99.43 E-value=1.1e-13 Score=92.75 Aligned_cols=60 Identities=27% Similarity=0.524 Sum_probs=57.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+.++||||.|+..+++.+++++|++||.|++|+|.++. .+.+|||+||.|.+.|.|.+||
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHH
Confidence 46789999999999999999999999999999999998 8999999999999999999987
No 30
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.2e-12 Score=67.17 Aligned_cols=55 Identities=29% Similarity=0.610 Sum_probs=51.3
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 33 VGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 33 v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
|+|||..+++++|+++|..||.+..+.+..++.+++++|+|||.|.+.++|+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~ 55 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKAL 55 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHH
Confidence 5789999999999999999999999999888767899999999999999999886
No 31
>KOG0127|consensus
Probab=99.39 E-value=1.1e-12 Score=90.29 Aligned_cols=60 Identities=32% Similarity=0.390 Sum_probs=58.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++||.|||++++++.|...|++||+|..+.++.++.|+.++|.|||.|.+..+|+.||
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCI 351 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999997
No 32
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.4e-12 Score=89.23 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=50.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCH--HHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQ--DFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~--~~a~~ai 87 (88)
...+||||||++.+++++|+.+|..||.|..+.|++. +| +|||||+|.+. +++++||
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAI 67 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLF 67 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHH
Confidence 4568999999999999999999999999999999944 56 89999999987 5677776
No 33
>KOG0125|consensus
Probab=99.39 E-value=1.1e-12 Score=85.51 Aligned_cols=61 Identities=20% Similarity=0.363 Sum_probs=54.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+...++|+|+|||+...+.||+.+|.+||.|.+|.|+.+. .-+|||+||.|.+.++|++|-
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRAR 153 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRAR 153 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHH
Confidence 3456889999999999999999999999999999999876 337899999999999998873
No 34
>KOG0111|consensus
Probab=99.36 E-value=3.8e-13 Score=84.05 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=59.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++||||+|..++++.-|...|-+||.|..++++.|-.+++++||+||+|...|+|.+||
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAi 69 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAI 69 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHh
Confidence 3445689999999999999999999999999999999999889999999999999999999987
No 35
>KOG0148|consensus
Probab=99.35 E-value=3.3e-12 Score=81.69 Aligned_cols=60 Identities=25% Similarity=0.488 Sum_probs=55.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++.+++.+++|+||++.-++++.|++.|++||+|..|++-+++ ||+||.|.++|+|+.||
T Consensus 158 NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAI 217 (321)
T ss_pred ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHH
Confidence 4567778999999999999999999999999999999987765 99999999999999997
No 36
>KOG0146|consensus
Probab=99.35 E-value=1.3e-12 Score=83.66 Aligned_cols=60 Identities=28% Similarity=0.470 Sum_probs=57.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++++||||.|...-.+++++.+|..||.+..|.+.+.. .|.+|||+||.|.+..+|+.||
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHH
Confidence 67899999999999999999999999999999988877 7999999999999999999998
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.34 E-value=1.3e-11 Score=63.84 Aligned_cols=57 Identities=30% Similarity=0.599 Sum_probs=52.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+|+|++||..+++++++++|..+|.+..+.+..++. +.++|++|++|.+.++|+.|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~ 57 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKAL 57 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHH
Confidence 489999999999999999999999999999988773 478999999999999999886
No 38
>KOG0130|consensus
Probab=99.34 E-value=3.3e-12 Score=74.56 Aligned_cols=66 Identities=26% Similarity=0.337 Sum_probs=61.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+.+.....|||.++...++++++.+.|..||+|..+.+-.|+.||-.+||++|+|.+.++|++||
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~ 131 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAI 131 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHH
Confidence 445556678999999999999999999999999999999999999999999999999999999997
No 39
>KOG0107|consensus
Probab=99.33 E-value=2.9e-12 Score=77.40 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=49.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+||||||+..+++.+|+..|..||++..+-|... +.|||||+|.++-+|..|+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAV 64 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHH
Confidence 3578999999999999999999999999988755443 5899999999998888875
No 40
>KOG0124|consensus
Probab=99.32 E-value=1.2e-12 Score=86.81 Aligned_cols=59 Identities=22% Similarity=0.442 Sum_probs=56.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+++|||.+++...++.++..|.+||+|.++.+.+|+.|++++||+||+|.-+|.|+-|+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAl 172 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLAL 172 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999998764
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.31 E-value=7.8e-12 Score=86.20 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=50.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++.|||+|||+++++++|+++|++||.|..+.++. ++|||||+|.+.++|+.||
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai 55 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACV 55 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHH
Confidence 47899999999999999999999999999998874 3589999999999999997
No 42
>KOG0145|consensus
Probab=99.29 E-value=2.2e-12 Score=82.35 Aligned_cols=61 Identities=26% Similarity=0.476 Sum_probs=58.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||++||...+..+|+++|++||.|..-++..|..+|.++|.+||.|...++|+.||
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AI 186 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAI 186 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHH
Confidence 4578999999999999999999999999999899999999999999999999999999997
No 43
>KOG0108|consensus
Probab=99.29 E-value=6.4e-12 Score=85.49 Aligned_cols=59 Identities=29% Similarity=0.467 Sum_probs=57.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+||||+|+++++++|..+|+..|.|..++++.|+.+|+++||+|++|.+.+.|+.||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~ 77 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAI 77 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999886
No 44
>KOG4207|consensus
Probab=99.27 E-value=7.2e-12 Score=77.63 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=56.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.-..|-|-||.+.++.++|+.+|++||.|-.|.|+.|+.|+.++||+||.|....+|+.|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~ 72 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDAL 72 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHH
Confidence 3457889999999999999999999999999999999999999999999999888887775
No 45
>KOG0114|consensus
Probab=99.26 E-value=4.1e-11 Score=67.12 Aligned_cols=61 Identities=13% Similarity=0.260 Sum_probs=53.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+++..+-|||.|||++++.++..++|.+||.|..+++-..+ ..+|=|||.|.+..+|..|+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~ 74 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKAC 74 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHH
Confidence 44556789999999999999999999999999999987655 46899999999999999885
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.24 E-value=4.4e-11 Score=82.50 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+||++ .+++++|+.+|+.||.|..++++.++ +|||||+|.+.++|+.||
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLAL 330 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 457899999998 69999999999999999999998763 699999999999999997
No 47
>KOG4205|consensus
Probab=99.23 E-value=1.8e-11 Score=80.28 Aligned_cols=61 Identities=28% Similarity=0.462 Sum_probs=57.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+..++|||+|+|+++++.|++.|..||.+..|.+++++.+++++||+||.|++++...+++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl 65 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL 65 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee
Confidence 5689999999999999999999999999999999999999999999999999888777665
No 48
>KOG0105|consensus
Probab=99.23 E-value=1.8e-11 Score=74.84 Aligned_cols=58 Identities=17% Similarity=0.371 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+++|||||||.++.+.+++++|-+||.|..|.+-..+ ....||||+|.++-+|+.||
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAi 62 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAI 62 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhh
Confidence 45789999999999999999999999999999874432 35689999999999999887
No 49
>KOG0145|consensus
Probab=99.19 E-value=8.6e-11 Score=75.20 Aligned_cols=62 Identities=24% Similarity=0.448 Sum_probs=58.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+...+|.|.-||...++++++.+|...|+|++|++++|+.+|.+.||+||.|.++++|++||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Ai 100 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAI 100 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999997
No 50
>KOG4212|consensus
Probab=99.17 E-value=1.1e-10 Score=79.08 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=54.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFS-EYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+.+||.|+|+++.|.+|++++. +.|+|..|.+..|. +||++||+.|+|+++|.+++|+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~ 103 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKAL 103 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHH
Confidence 35699999999999999999997 77999999999998 8999999999999999999885
No 51
>KOG0131|consensus
Probab=99.17 E-value=1.8e-11 Score=74.40 Aligned_cols=63 Identities=29% Similarity=0.428 Sum_probs=57.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN-INVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
....++||+||.+.+++..|.+.|+.||.+.. .++++++.+|.++||+|+.|.+.|.+.+|||
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 34578999999999999999999999999855 5788899899999999999999999999986
No 52
>KOG0123|consensus
Probab=99.16 E-value=1.2e-10 Score=78.27 Aligned_cols=54 Identities=28% Similarity=0.507 Sum_probs=51.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 31 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 31 l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+||.||+++++...|.+.|+.||.|.+|++..+. .| ++|| ||.|.++++|+.||
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAI 132 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHH
Confidence 9999999999999999999999999999999998 55 9999 99999999999998
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.14 E-value=2e-10 Score=80.70 Aligned_cols=53 Identities=15% Similarity=0.274 Sum_probs=48.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEY--GRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|||+||++++++++|+++|+.| |.|..+.++ ++||||+|.+.++|++||
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 35789999999999999999999999 999988653 469999999999999987
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.14 E-value=2.3e-10 Score=78.92 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=46.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcC------------CCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEY------------GRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~------------g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||||||+.+++++|+++|..+ +.|..+. .++.+|||||+|.+.++|+.||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al 240 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAM 240 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhh
Confidence 3456789999999999999999999875 2233333 2456899999999999999997
No 55
>KOG0147|consensus
Probab=99.14 E-value=4e-11 Score=82.34 Aligned_cols=57 Identities=23% Similarity=0.510 Sum_probs=55.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 31 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 31 l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+|||||.+.+++++|+.+|++||.|..+.+..+..+|.++||+|+.|.+.+.|..|+
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~ 337 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKAL 337 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHH
Confidence 899999999999999999999999999999999889999999999999999999873
No 56
>KOG0146|consensus
Probab=99.08 E-value=2.7e-10 Score=73.17 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=61.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++.++|||-.||.+..+.+|.+.|-+||.|.+.++..|+.|..+|.|+||.|.++.+|++||
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAI 344 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAI 344 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999998
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=99.07 E-value=6e-10 Score=58.52 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=40.0
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeecCCC--CCceeEEEEEeCCHHHHhchh
Q psy6962 42 EADLTKMFS----EYGRVYNIN-VLRDKVT--GQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 42 ~~~l~~~f~----~~g~v~~~~-~~~~~~~--g~~~g~~fv~f~~~~~a~~ai 87 (88)
+++|++.|+ .||.+..+. ++.++.+ +.++||+||.|.+.++|+.||
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~ 54 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAI 54 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHH
Confidence 567888888 999999985 6666656 899999999999999999986
No 58
>KOG0124|consensus
Probab=99.05 E-value=4.1e-10 Score=75.02 Aligned_cols=60 Identities=17% Similarity=0.357 Sum_probs=55.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
-.+|||..+.++.+++|++..|+.||+|..|.+.+.+..+.++||+|++|.+..+...||
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 357999999999999999999999999999999999977889999999999888777776
No 59
>KOG0415|consensus
Probab=99.04 E-value=3.1e-10 Score=75.21 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=56.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
....|||.-|.+-+++++|.-+|+.||.|..|.++++..||.+..|+||+|.+.+++.+|
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~A 297 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQA 297 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHH
Confidence 346799999999999999999999999999999999999999999999999999999877
No 60
>KOG0127|consensus
Probab=99.02 E-value=6.2e-10 Score=76.98 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=56.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+|||++||+.++.++|.++|+.+|+|..+.++.++.++.++||+||.|+-.++++.|+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~ 64 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRAL 64 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHH
Confidence 79999999999999999999999999999999999988899999999999999999886
No 61
>KOG0117|consensus
Probab=98.97 E-value=1.5e-09 Score=73.49 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCCccceeeeeccCCCCCCCCC--------CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEE
Q psy6962 4 RINPLMFSLVCFRSMSLPEQPD--------PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNT 75 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv 75 (88)
+|-+..+.+--+.....|..+. ...+.|||.||+.++|++.|+.+|..||.|.+|+.+ +.|+||
T Consensus 227 Kl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--------rDYaFV 298 (506)
T KOG0117|consen 227 KLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--------RDYAFV 298 (506)
T ss_pred hccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc--------cceeEE
Confidence 4555556655444444443221 234679999999999999999999999999998644 569999
Q ss_pred EeCCHHHHhchh
Q psy6962 76 SNITQDFSTTTI 87 (88)
Q Consensus 76 ~f~~~~~a~~ai 87 (88)
.|.+.++|..|+
T Consensus 299 Hf~eR~davkAm 310 (506)
T KOG0117|consen 299 HFAEREDAVKAM 310 (506)
T ss_pred eecchHHHHHHH
Confidence 999999999885
No 62
>KOG4205|consensus
Probab=98.93 E-value=3.8e-09 Score=69.51 Aligned_cols=59 Identities=25% Similarity=0.497 Sum_probs=55.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
.++|||++||.+++++++++.|.+||.|..+.++.|..+.+++||+||.|.+++++..+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 56899999999999999999999999999999999999999999999999998887654
No 63
>KOG4208|consensus
Probab=98.89 E-value=7.7e-09 Score=64.01 Aligned_cols=58 Identities=24% Similarity=0.430 Sum_probs=52.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEY-GRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
.-+|+..+|.-..+..+...|.++ |.+...++.+++.||.++|||||+|.+++.|.-|
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~Ia 108 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIA 108 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHH
Confidence 458999999999999999998888 7778888889999999999999999999998765
No 64
>KOG0109|consensus
Probab=98.83 E-value=3.1e-09 Score=68.83 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=45.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++||||||..+++..|+.+|++||.|..|.|+++ |+||...+...|..||
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedai 53 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAI 53 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHH
Confidence 47999999999999999999999999999998754 7888888887877776
No 65
>KOG0110|consensus
Probab=98.82 E-value=3.5e-09 Score=74.79 Aligned_cols=60 Identities=17% Similarity=0.345 Sum_probs=55.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+|+|.|||+.++-.+++.+|..||.+..++++.....+.++|||||+|-++.+|..|+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAF 672 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHH
Confidence 358999999999999999999999999999999988667789999999999999999886
No 66
>KOG4661|consensus
Probab=98.82 E-value=1.9e-08 Score=70.44 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=56.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||.+|+-.+...+|+.+|++||.|.-.+++.+-.+.-.+.|+||.+.+.++|+.||
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI 464 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCI 464 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHH
Confidence 467999999999999999999999999999999988777778899999999999999998
No 67
>KOG0123|consensus
Probab=98.79 E-value=2e-08 Score=67.61 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=56.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......|||.|++..++.+.|+..|+.+|.|..+++..+. .|+++||+||.|.+.++|+.|+
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~ 328 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAM 328 (369)
T ss_pred cccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHH
Confidence 3455789999999999999999999999999999998887 8999999999999999999875
No 68
>KOG0116|consensus
Probab=98.79 E-value=1.1e-08 Score=69.67 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=50.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..|||.|||++++.++|++.|..||.|....|......++...|+||+|.+.++++.||
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i 347 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAI 347 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhh
Confidence 44999999999999999999999999998877654434565599999999999998876
No 69
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.71 E-value=4e-08 Score=49.23 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=32.2
Q ss_pred HHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 45 LTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 45 l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
|..+|++||.|..+.+..+. ++++||+|.+.++|..|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~ 38 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAI 38 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHH
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 67899999999999875543 699999999999999886
No 70
>KOG4206|consensus
Probab=98.64 E-value=7.7e-08 Score=60.25 Aligned_cols=56 Identities=13% Similarity=0.433 Sum_probs=49.4
Q ss_pred ceEEEcCCCCCCCHHHHHH----HhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTK----MFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~----~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+|||.||+..+..++|+. +|++||.|..|...+ +.+.+|-|||.|++.+.|..|+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~ 69 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAAL 69 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHH
Confidence 3999999999999998887 999999998876543 6789999999999999988876
No 71
>KOG0132|consensus
Probab=98.62 E-value=6.9e-08 Score=69.20 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=49.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+++||||.|+..+++.+|..+|+.||+|.+|.+.. ++|||||.+....+|..|+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHH
Confidence 457899999999999999999999999999998644 5699999999999998876
No 72
>KOG4212|consensus
Probab=98.60 E-value=7e-08 Score=65.77 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=49.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+.+.|+|.|||+++||..|++.|..||+|....|+ . .|+++| .|.|.+++.|+.|+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim-e--~GkskG--VVrF~s~edAEra~ 590 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM-E--NGKSKG--VVRFFSPEDAERAC 590 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhh-c--cCCccc--eEEecCHHHHHHHH
Confidence 345679999999999999999999999999998883 3 377888 78999999999886
No 73
>KOG4209|consensus
Probab=98.59 E-value=8.2e-08 Score=61.03 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=57.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+...+|++|+.+..+.++++..|+.||.+..+.++.+..++.++||+|++|.+.+.+..++
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay 160 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAY 160 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHh
Confidence 3445678999999999999999999999999999999999989999999999999999887765
No 74
>KOG0533|consensus
Probab=98.59 E-value=1.8e-07 Score=59.79 Aligned_cols=61 Identities=26% Similarity=0.434 Sum_probs=55.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+++|.|||..+.+++|+++|..||.+..+.+..++ .|.+.|.|-|.|...++|..||
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~av 141 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAV 141 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHH
Confidence 344789999999999999999999999988888887887 8999999999999999998876
No 75
>KOG0153|consensus
Probab=98.59 E-value=9.3e-08 Score=63.23 Aligned_cols=55 Identities=20% Similarity=0.409 Sum_probs=48.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||++|...+++.+|++.|-+||+|.++.+.... ++|||.|.+.++|+.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aa 281 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAA 281 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHH
Confidence 34689999998899999999999999999999876543 69999999999998773
No 76
>KOG0109|consensus
Probab=98.58 E-value=4.8e-08 Score=63.43 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=49.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+..+.+++|||+.+.++..+|+..|.+||++..|.+++ +|+||.|.-.++|..||
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAI 129 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHH
Confidence 44567899999999999999999999999999998864 59999999999999887
No 77
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.56 E-value=7.2e-07 Score=49.72 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=50.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhc
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSE--YGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTT 85 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ 85 (88)
.+|.+.|+|-..+.++|.+++.. .|....+.++.|..++-+.|||||.|.+++.|..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~ 60 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIR 60 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHH
Confidence 57999999999999999888864 3677889999999899999999999999888753
No 78
>KOG0226|consensus
Probab=98.51 E-value=2.9e-07 Score=58.88 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=56.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+.+||.|-|.-+.+++.|-..|.+|-.....++++++.+|+++||+||.|.+.+++..|+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHH
Confidence 45678999999999999999999999998888899999999999999999999999887764
No 79
>KOG4454|consensus
Probab=98.51 E-value=5.5e-08 Score=61.05 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..++|||+|+...++++.|.++|...|+|.++.|+..+ .++.+ |+||.|+++....-|+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~ 66 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAG 66 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhh
Confidence 3456899999999999999999999999999999988877 56666 9999999988777665
No 80
>KOG0110|consensus
Probab=98.49 E-value=2.6e-07 Score=65.61 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=49.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC---CCceeEEEEEeCCHHHHhchh
Q psy6962 31 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVT---GQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 31 l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~~g~~fv~f~~~~~a~~ai 87 (88)
||+.||+++++.+++...|...|.|..+.|...+.- -.+.||+||+|.+.+.|+.|+
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~ 577 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAAL 577 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHH
Confidence 999999999999999999999999999887654411 125599999999999999886
No 81
>KOG1457|consensus
Probab=98.29 E-value=5.8e-06 Score=52.31 Aligned_cols=61 Identities=10% Similarity=0.201 Sum_probs=49.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC-CCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVT-GQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|||.+||.++...+|..+|..|...+-+.+-..... .-++-++|+.|.+..+|.+|.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aam 94 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAM 94 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHH
Confidence 4689999999999999999999999977666655544323 336789999999999998874
No 82
>KOG4660|consensus
Probab=98.28 E-value=1.3e-06 Score=60.70 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=49.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+.+|+|-|||..++.++|..+|+.||+|..++. +...+|.+||+|.+.-.|++|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHH
Confidence 4678999999999999999999999999988754 4456899999999998888875
No 83
>KOG0106|consensus
Probab=98.24 E-value=1.1e-06 Score=55.18 Aligned_cols=51 Identities=16% Similarity=0.440 Sum_probs=45.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+|||+||+.+.+.++..+|..||.+..+.+ ..||+||+|.+.-+|..||
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--------k~gf~fv~fed~rda~Dav 52 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--------KNGFGFVEFEDPRDADDAV 52 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--------ecccceeccCchhhhhccc
Confidence 36899999999999999999999999988865 3478899999999998876
No 84
>KOG0151|consensus
Probab=98.16 E-value=3.7e-06 Score=60.25 Aligned_cols=63 Identities=16% Similarity=0.374 Sum_probs=53.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecC---CCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK---VTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+.+.++|++||++.+++..|-..|..||++..++++..+ ...+.+-|+||.|-+..+|++|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~ 236 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERAL 236 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHH
Confidence 4567899999999999999999999999999999987644 12356679999999998888775
No 85
>KOG4211|consensus
Probab=98.13 E-value=1.7e-05 Score=54.75 Aligned_cols=58 Identities=17% Similarity=0.329 Sum_probs=48.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...-|-+.+|||++|+++|.++|+-++ |..+.+++ .+|+..|=|||+|.++++++.|+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Al 66 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKAL 66 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHH
Confidence 345677899999999999999999986 56654444 46999999999999999999885
No 86
>KOG0147|consensus
Probab=98.10 E-value=7.4e-07 Score=61.85 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=57.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
+.+++|+-.|+...+..+|.++|+.+|.|..+.++.++.+++++|.+|++|.+.+....|||
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia 239 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA 239 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh
Confidence 35678999999999999999999999999999999999999999999999999988887775
No 87
>KOG1548|consensus
Probab=98.06 E-value=1.5e-05 Score=53.09 Aligned_cols=58 Identities=19% Similarity=0.393 Sum_probs=50.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYN--------INVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..|||+|||.++|.+...++|+.||-|.. |++.++. .|+.+|=+++.|--.++..-||
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~ 200 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAI 200 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHH
Confidence 45999999999999999999999997753 7788887 5999999999998888877665
No 88
>KOG4849|consensus
Probab=98.01 E-value=3e-06 Score=56.64 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=46.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYG--RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
.+|||||-|++++++|.+.+..-| .+..+++..++..|.++||+++...+.++.+..
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~ 140 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQT 140 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHH
Confidence 489999999999999988887665 445566667788899999999999988776653
No 89
>KOG1457|consensus
Probab=97.94 E-value=9.2e-06 Score=51.43 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=45.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++||.||...++++.|+.+|+.|.....+++... .|. ..+|++|.+.+.|+.|+
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQATDAM 265 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHHHHH
Confidence 357999999999999999999999987777665432 232 47999999999998875
No 90
>KOG0120|consensus
Probab=97.92 E-value=1.6e-05 Score=55.40 Aligned_cols=61 Identities=23% Similarity=0.461 Sum_probs=55.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|+++||...++..++++...||++....++.+..+|-++||+|.+|.+......||
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~ 348 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAI 348 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhh
Confidence 4567999999999999999999999999999999999989999999999998877776665
No 91
>KOG0129|consensus
Probab=97.90 E-value=3.3e-05 Score=53.63 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=45.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec--CCC-CCcee---EEEEEeCCHHHHhch
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD--KVT-GQSKG---LKNTSNITQDFSTTT 86 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~--~~~-g~~~g---~~fv~f~~~~~a~~a 86 (88)
-+.+||||+||++++++.|...|..||.+ .+.++.. ... --++| |+|+.|.++...+..
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 45789999999999999999999999984 4456521 111 23566 999999998776653
No 92
>KOG4211|consensus
Probab=97.89 E-value=7.6e-05 Score=51.64 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYN-INVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
....|-+.+||+.++++++.++|..---+.. +.++.+. .+++.|=|||.|.+.+.|+.|+|
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH
Confidence 4467889999999999999999997654444 4566666 78899999999999999999975
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=3.8e-05 Score=43.38 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=32.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.|.+.+++..++.++|++.|+.||.|..|.+.. |. .-|+|.|.+++.|+.|+
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~----G~--~~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR----GD--TEGYVRFKTPEAAQKAL 54 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T----T---SEEEEEESS---HHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC----CC--CEEEEEECCcchHHHHH
Confidence 467888999999999999999999988887643 22 36889999999998876
No 94
>KOG4210|consensus
Probab=97.85 E-value=9e-06 Score=53.25 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=54.2
Q ss_pred CceEE-EcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMF-VGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~-v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++| ++++++.++.++|+..|..+|.+..++++.++.++.++||+++.|.....+..++
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 34565 9999999999999999999999999999999999999999999999988877665
No 95
>KOG1995|consensus
Probab=97.82 E-value=4.4e-05 Score=50.90 Aligned_cols=63 Identities=29% Similarity=0.352 Sum_probs=55.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVY--------NINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++||.+||..++.+++.++|.++|.|. .+.+-.++.|++++|=|.|.|.+..+|++||
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai 133 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAI 133 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhh
Confidence 34456899999999999999999999999764 3566778889999999999999999999987
No 96
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.53 E-value=0.00048 Score=34.21 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=39.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.|-|.+.+++..+. +...|..||+|....+. ...-..++.|.++.+|+.|+
T Consensus 3 wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 45677777665544 45578889999998764 23468999999999999985
No 97
>KOG0129|consensus
Probab=97.47 E-value=0.00056 Score=47.71 Aligned_cols=66 Identities=23% Similarity=0.335 Sum_probs=56.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFS-EYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+++-...++||||+||.-.+.++|-.+|. .||.|..+-|=.|+.-+-++|-+-|.|.+..+=-+||
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 33445568999999999999999999998 8999999988778767789999999999877766665
No 98
>KOG4206|consensus
Probab=97.42 E-value=0.00069 Score=42.79 Aligned_cols=57 Identities=14% Similarity=0.342 Sum_probs=48.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
.+....+|+.|||..++.+.+..+|..|.....++++... ++.+||+|.++..|..|
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a 199 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAA 199 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHH
Confidence 4455779999999999999999999999988888877643 57999999998776655
No 99
>KOG1855|consensus
Probab=97.37 E-value=0.00026 Score=48.51 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=54.7
Q ss_pred ccCCCCCCCCCC--CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec---CC--CCCc--------eeEEEEEeCC
Q psy6962 15 FRSMSLPEQPDP--DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD---KV--TGQS--------KGLKNTSNIT 79 (88)
Q Consensus 15 ~~~~~~~~~~~~--~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~--~g~~--------~g~~fv~f~~ 79 (88)
.+..+.++.+.+ ..++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.. +. .+.+ +-+|+|+|..
T Consensus 216 rRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~ 295 (484)
T KOG1855|consen 216 RRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEE 295 (484)
T ss_pred eecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhh
Confidence 344444444444 6789999999999999999999999999999998765 21 2222 4578999998
Q ss_pred HHHHhch
Q psy6962 80 QDFSTTT 86 (88)
Q Consensus 80 ~~~a~~a 86 (88)
.+.|.+|
T Consensus 296 ~~~A~KA 302 (484)
T KOG1855|consen 296 VEAARKA 302 (484)
T ss_pred hHHHHHH
Confidence 8888776
No 100
>KOG0128|consensus
Probab=97.29 E-value=9.9e-06 Score=58.88 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=53.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
.++|++||+......+|...|..+|.+..+++..-...++.+|.||++|.+++.+.+||+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 458999999999999999999999999888877555578999999999999999999885
No 101
>KOG0128|consensus
Probab=97.24 E-value=0.00019 Score=52.54 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=54.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
...++|.|.|+..+.+.|+.+++.+|.+..++++..+ .|+++|.+++.|.++..+..+++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~ 795 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVA 795 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcc
Confidence 4569999999999999999999999999999887777 79999999999999988877653
No 102
>KOG1190|consensus
Probab=97.22 E-value=0.0006 Score=46.63 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=45.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhc
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTT 85 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ 85 (88)
.++.+.+++||++++++++-.++.+||.|..+.+.. |+ .-+|++|.+++.|..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk----Gk--nQAflem~d~~sAvt 79 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK----GK--NQAFLEMADEESAVT 79 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeec----cc--hhhhhhhcchhhhhh
Confidence 567899999999999999999999999999987543 22 379999999988865
No 103
>KOG1365|consensus
Probab=97.22 E-value=0.0031 Score=43.06 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=48.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhc-C---CCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSE-Y---GRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~-~---g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
.-.+-+.+||+++++.++.++|.+ | |..+.+..+..+ .|+..|=||+.|..++.|+.|++
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHH
Confidence 345678899999999999999963 2 344556556555 79999999999999999999874
No 104
>KOG2314|consensus
Probab=97.09 E-value=0.00079 Score=47.71 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=47.6
Q ss_pred ceEEEcCCCCCCCH--H----HHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDE--A----DLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~--~----~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..|+|.|+|.--.. + -|..+|+++|++....++.+.. |.++||.|++|.+...|+.||
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aV 122 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAV 122 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHH
Confidence 46888998875432 2 3568899999999999998884 449999999999999999886
No 105
>KOG0106|consensus
Probab=97.03 E-value=0.00051 Score=43.39 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=44.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+.+.+++..+.+.+|.+.|..+|.+....+ ..+++||+|.+.++|+.||
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~ 150 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRAL 150 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcc
Confidence 4456889999999999999999999999844322 5689999999999999886
No 106
>KOG3152|consensus
Probab=96.92 E-value=0.00059 Score=43.99 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=43.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC--------CCceeE----EEEEeCCHHHHhc
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVT--------GQSKGL----KNTSNITQDFSTT 85 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--------g~~~g~----~fv~f~~~~~a~~ 85 (88)
...||+++||+......|+++|..||.|-.|.+.....+ |..++. |-|+|.+.-.|..
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~ 143 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKR 143 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHH
Confidence 346999999999999999999999999999998766544 333332 3466666555543
No 107
>KOG0105|consensus
Probab=96.67 E-value=0.0076 Score=37.55 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=44.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.-++.|.+||.+.+|.+|++-....|.++...+.+|. .+.|+|-..|+-+-||
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~GvV~~~r~eDMkYAv 167 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGVVEYLRKEDMKYAV 167 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ceeeeeeehhhHHHHH
Confidence 3568999999999999999999999999998876654 6778887777766554
No 108
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.57 E-value=0.0074 Score=32.91 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=32.4
Q ss_pred ceEEEcCCCCCCCHHH----HHHHhhcCC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEAD----LTKMFSEYG-RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..|||.|||.+.+... |++++.-|| .|..+ ..+-|++.|.+++.|..|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~ 56 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQ 56 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHH
Confidence 3589999999988654 567777776 44444 2368999999999998873
No 109
>KOG4307|consensus
Probab=96.48 E-value=0.011 Score=43.19 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=48.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+.|-+.|+|++++-+++.++|..|-.+..-.+.+..+.|+..|=|.|.|.+.++|+.|.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~ 926 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRAS 926 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhh
Confidence 346788999999999999999999976643223334447999999999999999999874
No 110
>KOG1365|consensus
Probab=96.41 E-value=0.0046 Score=42.28 Aligned_cols=59 Identities=7% Similarity=0.133 Sum_probs=49.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCC-eeE--EEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGR-VYN--INVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~-v~~--~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...|-+.+||+..+.+++.++|..|.. +.. +.++.+. .|++.|=|||.|.+++.|.+|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaa 341 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAA 341 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHH
Confidence 346888999999999999999998853 344 6677776 7999999999999999988764
No 111
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.40 E-value=0.036 Score=30.19 Aligned_cols=49 Identities=16% Similarity=0.395 Sum_probs=33.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
+-.|++ .|......||.++|++||.|. |.++.+. =|||.....+.|..+
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v 58 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVV 58 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHH
Confidence 455665 999999999999999999853 4455443 578888887777654
No 112
>KOG0115|consensus
Probab=96.20 E-value=0.0052 Score=39.77 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=47.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
..|||.||+.-++-+.|...|+.||++....+..|. .+++.+=++|.|...-.|.+|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a 88 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKA 88 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHH
Confidence 569999999999999999999999999775444444 688888999999887666655
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.19 E-value=0.011 Score=39.95 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=41.2
Q ss_pred EEEcCCCCCCCHHH----H--HHHhhcCCCeeEEEEeecCCC-CCcee--EEEEEeCCHHHHhchhC
Q psy6962 31 MFVGQIPRSMDEAD----L--TKMFSEYGRVYNINVLRDKVT-GQSKG--LKNTSNITQDFSTTTIG 88 (88)
Q Consensus 31 l~v~nL~~~~~~~~----l--~~~f~~~g~v~~~~~~~~~~~-g~~~g--~~fv~f~~~~~a~~ai~ 88 (88)
+||-+||+.+..+. | .+.|.+||.|..|.+-+...+ ....+ -.||.|.+.++|..||.
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa 183 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIA 183 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHH
Confidence 79999998886554 3 588999999998765432101 11122 25999999999999983
No 114
>KOG2416|consensus
Probab=95.60 E-value=0.01 Score=42.52 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=44.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFS-EYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
..+..|||.||-.-.|.-+|+.++. .+|.|... |+|+ .+..|||.|.+.++|.+.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~at 497 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAAT 497 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHH
Confidence 3456799999999999999999998 55666554 6665 778999999999998764
No 115
>KOG1190|consensus
Probab=95.56 E-value=0.042 Score=37.94 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=45.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+.++...|+|.+.++++++..|..-|...+... .-++.+-++++.+.+.|+|-.|+
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafk----ff~kd~kmal~q~~sveeA~~al 469 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFK----FFQKDRKMALPQLESVEEAIQAL 469 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeee----ecCCCcceeecccCChhHhhhhc
Confidence 4567999999999999999999998876544332 23556679999999999987664
No 116
>KOG4307|consensus
Probab=95.52 E-value=0.018 Score=42.20 Aligned_cols=60 Identities=17% Similarity=0.023 Sum_probs=49.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYN-INVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..-.|||..||..++..++-+.|...-.|+. |.|...+ +++..+.+||.|..++++.+|.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~ 493 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTAS 493 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhh
Confidence 3456999999999999999999987666655 7776666 7889999999999988777663
No 117
>KOG1548|consensus
Probab=95.47 E-value=0.037 Score=37.35 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=41.9
Q ss_pred CCceEEEcCC----CCCCC-------HHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQI----PRSMD-------EADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL----~~~~~-------~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|-+.|+ .+..+ .++|++-..+||.|.++.+.-. .+.|.+.|.|.+.++|..||
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ci 331 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCI 331 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHH
Confidence 3466777776 22233 3456667889999999866433 37799999999999999997
No 118
>KOG4676|consensus
Probab=95.30 E-value=0.019 Score=39.40 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=46.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCC---CCCceeEEEEEeCCHHHHhch
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKV---TGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~~g~~fv~f~~~~~a~~a 86 (88)
..|.|.||++.++.++++.+|.--|.|..+.|..+.. .....-.|||.|.+...+.+|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va 68 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA 68 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH
Confidence 3789999999999999999999999999998875432 233456899999888777655
No 119
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.15 E-value=0.19 Score=25.75 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=38.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcC---CCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEY---GRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+|++.+++. .+.++++..|..| .....+.++-|. =|-|.|.+++.|..|+
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHH
Confidence 4688989866 4567788888877 234677777765 3668899999999886
No 120
>KOG1456|consensus
Probab=94.85 E-value=0.2 Score=34.48 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=47.7
Q ss_pred CCceEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSM-DEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+.|.+|.... +.+.|..+|-.||.|.++++++.+ .|-+.|++.+..+.+.||
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v 342 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAV 342 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHH
Confidence 45678899998765 678899999999999999998875 478999999999998876
No 121
>KOG2193|consensus
Probab=94.83 E-value=0.027 Score=39.15 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=38.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++|++||.+..+..+|..+|...- +..+..--...||+|++..+...|-.||
T Consensus 3 klyignL~p~~~psdl~svfg~ak------~~~~g~fl~k~gyafvd~pdq~wa~kai 54 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK------IPGSGQFLVKSGYAFVDCPDQQWANKAI 54 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc------CCCCcceeeecceeeccCCchhhhhhhH
Confidence 689999999999999999997541 1111111123589999999999988876
No 122
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.56 E-value=0.15 Score=28.63 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=36.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEE-EeecC------CCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNIN-VLRDK------VTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~-~~~~~------~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..-|.|-+.|+. ....+-+.|++||.|.... +..+. .........-+.|.++.+|..|+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL 71 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL 71 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH
Confidence 345777788888 5567788899999987653 11110 01123357889999999999997
No 123
>KOG0112|consensus
Probab=94.28 E-value=0.059 Score=40.41 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=46.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|+++|..++....|...|..||.+..|.+- ....|+++.|.+...|+.|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAAT 508 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhH
Confidence 345679999999999999999999999999987652 23469999999988888764
No 124
>KOG1456|consensus
Probab=93.83 E-value=0.29 Score=33.73 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=44.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..+.|.+|-..+.+.+|-+.++.||.+..+-.+. .+--+.++|.+.+.|..|+
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P------~~r~alvefedi~~akn~V 84 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP------HKRQALVEFEDIEGAKNCV 84 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEecc------ccceeeeeeccccchhhhe
Confidence 446789999999999999999999999998876543 2347889999888887764
No 125
>KOG4483|consensus
Probab=93.77 E-value=0.28 Score=34.04 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRV-YNINVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
-.+.|-|.++|.....+||...|..|+.- ..|.|+-+. ++|..|.+...|..|++
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 34678899999999999999999999754 677777665 88999999999888874
No 126
>KOG0120|consensus
Probab=93.64 E-value=0.16 Score=36.00 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCeeEEEEeec-C--CCCCceeEEEEEeCCHHHHhchh
Q psy6962 44 DLTKMFSEYGRVYNINVLRD-K--VTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 44 ~l~~~f~~~g~v~~~~~~~~-~--~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+++.-+..||.|..|.++++ . .-.-.-|-.||+|.+.++|+.|.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~ 471 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAM 471 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHH
Confidence 56667778999999998876 2 12345577999999999999874
No 127
>KOG4210|consensus
Probab=93.46 E-value=0.047 Score=36.03 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=51.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
...+.|++++.+.+.+.+...++..+|......+........++|++.+.|...+.+..|++
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~ 148 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE 148 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH
Confidence 35679999999999998888888889877666665555578899999999999999888763
No 128
>KOG2591|consensus
Probab=92.84 E-value=0.49 Score=34.16 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=43.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSE--YGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
+.+.+.+.-||..+..+.++.+|.. |..+..|....+. -.||.|.++++|+.|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqA 228 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQA 228 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHH
Confidence 3455678999999999999999974 7788888776654 468999999999987
No 129
>KOG2068|consensus
Probab=92.78 E-value=0.078 Score=35.54 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=41.9
Q ss_pred ceEEEcCCCCCCCHHHH---HHHhhcCCCeeEEEEeecC--CCCCceeE-EEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADL---TKMFSEYGRVYNINVLRDK--VTGQSKGL-KNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l---~~~f~~~g~v~~~~~~~~~--~~g~~~g~-~fv~f~~~~~a~~ai 87 (88)
..+|+-+|+....++.+ ...|.+||.+..+.+-.+. .++...++ ++|.|...++|..||
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci 142 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCI 142 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHH
Confidence 34788889888765543 4678889999988776654 22222222 899999999999887
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.98 E-value=1.8 Score=24.62 Aligned_cols=56 Identities=11% Similarity=0.025 Sum_probs=38.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHhc
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGLKNTSNITQDFSTT 85 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ 85 (88)
...+-+...|..++.++|..+...+- .+..+++.++. ..++-.+++.|.+.+.|..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~ 69 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADE 69 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHH
Confidence 33445566666667777776666664 45678887765 3356679999999988864
No 131
>KOG0112|consensus
Probab=90.62 E-value=0.064 Score=40.22 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=40.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
..+.+||+|||+...++.+++..|..+|.+..+.+-... -+.-.-|+|+.|-.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n 422 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLN 422 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhc
Confidence 346789999999999999999999999999998764432 23333467777654
No 132
>KOG2253|consensus
Probab=90.04 E-value=0.24 Score=36.11 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=43.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++.+...++||+|+...+..+-++.+...||.|..+.... |+|..|..+.....|+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~ 90 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRAS 90 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHH
Confidence 3445667899999999999999999999999877654221 8888998877665543
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.92 E-value=0.61 Score=28.65 Aligned_cols=58 Identities=9% Similarity=0.048 Sum_probs=33.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc-CCCe---eEEEEeec--CCCCCceeEEEEEeCCHHHHh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSE-YGRV---YNINVLRD--KVTGQSKGLKNTSNITQDFST 84 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~-~g~v---~~~~~~~~--~~~g~~~g~~fv~f~~~~~a~ 84 (88)
...+|-|.+||+..+++++...+.. ++.- ..+.-... ........-|||.|.+.+...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~ 69 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLL 69 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHH
Confidence 3468999999999999998887776 5554 22221122 111223455999999877643
No 134
>KOG4410|consensus
Probab=89.09 E-value=0.67 Score=30.94 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=35.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQD 81 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~ 81 (88)
.-||++|||.++.-.+|+..+..-+.+-. .+.+.. ++|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm-~iswkg----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPM-SISWKG----HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCce-eEeeec----CCcceeEecCCcc
Confidence 34999999999999999999988776522 222222 5677999997654
No 135
>KOG1996|consensus
Probab=87.24 E-value=1.9 Score=29.02 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCCeeEEEEeecCCCCCceeE-EEEEeCCHHHHhchh
Q psy6962 43 ADLTKMFSEYGRVYNINVLRDKVTGQSKGL-KNTSNITQDFSTTTI 87 (88)
Q Consensus 43 ~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~-~fv~f~~~~~a~~ai 87 (88)
+..++-..+||.|..|.|...+........ .||+|...++|..|+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~ 346 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAV 346 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHH
Confidence 345777889999999887766644445555 899999999998875
No 136
>KOG2202|consensus
Probab=87.23 E-value=0.15 Score=33.09 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=32.3
Q ss_pred HHHHHhh-cCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 44 DLTKMFS-EYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 44 ~l~~~f~-~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++...+. +||.|..+.+..+. .-...|=++|.|..+++|++|+
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~ 127 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAAL 127 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHH
Confidence 4444444 89999988665544 4557788999999999999886
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=84.32 E-value=1.8 Score=26.13 Aligned_cols=52 Identities=10% Similarity=0.157 Sum_probs=33.8
Q ss_pred ceEEEc----CCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVG----QIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~----nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+|-|. |+.+.-+-..+.+.++.||+|.++-+ .|+ .=|.|.|.+..+|=.|+
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cGr--qsavVvF~d~~SAC~Av 142 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CGR--QSAVVVFKDITSACKAV 142 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cCC--ceEEEEehhhHHHHHHH
Confidence 456554 44444444556677789999998854 233 45888898877776554
No 138
>KOG4285|consensus
Probab=82.22 E-value=11 Score=25.54 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=36.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 31 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 31 l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+-|-+.|+.. ...+...|.+||.|.+.. ++...-+-.|.|.+.-+|++||
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv------~~~ngNwMhirYssr~~A~KAL 249 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHV------TPSNGNWMHIRYSSRTHAQKAL 249 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeee------cCCCCceEEEEecchhHHHHhh
Confidence 4445666553 356678899999987753 3334458889999999999987
No 139
>KOG4660|consensus
Probab=82.21 E-value=0.8 Score=32.85 Aligned_cols=56 Identities=11% Similarity=0.034 Sum_probs=38.5
Q ss_pred eEEEcCCCCCCCHHHHHHHh-hcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhc
Q psy6962 30 KMFVGQIPRSMDEADLTKMF-SEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTT 85 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f-~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ 85 (88)
++.+.|++-..|...|.+.- ...|.-..+.++.|-......|||||.|-+++++-.
T Consensus 390 t~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~ 446 (549)
T KOG4660|consen 390 TLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIR 446 (549)
T ss_pred hhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHH
Confidence 44555555555554443332 245677788899887777899999999998887643
No 140
>KOG0804|consensus
Probab=75.69 E-value=27 Score=25.02 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=43.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEeecCCCCCceeEEEEEeCCHHHHh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEY-GRVYNINVLRDKVTGQSKGLKNTSNITQDFST 84 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~ 84 (88)
...|+|-.+|-..+..||-.+...+ ..|..++++++. --.+=..++.|.+.++|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~ 129 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADAD 129 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHH
Confidence 5778999999999999998888765 467889998854 223334999999988885
No 141
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.80 E-value=8.9 Score=25.76 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=41.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC-------CCceeEEEEEeCCHHHH
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVT-------GQSKGLKNTSNITQDFS 83 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-------g~~~g~~fv~f~~~~~a 83 (88)
.++.|.+.|+..+++-..+-..|..||+|+.+.+..+..+ .+...-..+.|-+.+.|
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~C 77 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREIC 77 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHH
Confidence 3566888999999998888999999999999999876511 12223456666665544
No 142
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=70.79 E-value=12 Score=23.02 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=37.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEE
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKN 74 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~f 74 (88)
......+++++++.......+...|..+|.+....+...........+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 34556799999999999999999999999997666655443333444444
No 143
>KOG2891|consensus
Probab=70.68 E-value=6 Score=26.56 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=26.0
Q ss_pred CceEEEcCCCCC------------CCHHHHHHHhhcCCCeeEEEEe
Q psy6962 28 FIKMFVGQIPRS------------MDEADLTKMFSEYGRVYNINVL 61 (88)
Q Consensus 28 ~~~l~v~nL~~~------------~~~~~l~~~f~~~g~v~~~~~~ 61 (88)
..+||+.+||-. .++.-|+..|..||.|..+.++
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 356777777642 3466799999999999988876
No 144
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=66.97 E-value=17 Score=19.87 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=31.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEe
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSN 77 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f 77 (88)
.-+|||+++..+.+.--..+....+....+-+..+. . ..||.|-..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~ 71 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTL 71 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEe
Confidence 349999999998877666666656555554444443 2 778888766
No 145
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=65.61 E-value=17 Score=18.63 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=15.3
Q ss_pred HHHHHHhhcCCCeeEEEE
Q psy6962 43 ADLTKMFSEYGRVYNINV 60 (88)
Q Consensus 43 ~~l~~~f~~~g~v~~~~~ 60 (88)
+++++.|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999999987665
No 146
>KOG4008|consensus
Probab=63.25 E-value=8.2 Score=25.16 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeE
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN 57 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~ 57 (88)
..+...+|+-|+|..++++.|.++.+.+|.+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 345578999999999999999999999886544
No 147
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=60.52 E-value=23 Score=19.78 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=30.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
.-+|||+++..+.+.--..+-+.++....+-+..++ ...||.|-.+.+
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~---~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN---TESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC---CCCCcEEEecCC
Confidence 349999998888776656666666554444344333 333888766544
No 148
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=57.72 E-value=26 Score=18.09 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=26.6
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 39 SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 39 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
.++-++++..+..|+-. ++..++ + | -||.|.+..+|+.|
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC 49 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERC 49 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHH
Confidence 45678999999998642 223333 2 2 37889998899876
No 149
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=55.87 E-value=36 Score=20.52 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=25.6
Q ss_pred HHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 44 DLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 44 ~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.|-+.|..||.+.-++++.+ --.|.|.+-..|.+|+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal 87 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL 87 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH
Confidence 56778888998877766532 3568888888887765
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=54.43 E-value=34 Score=19.57 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=21.7
Q ss_pred CHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 41 DEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 41 ~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
+.+.|++.|..|.++. ++.+... .-+.|+++|+|..
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNK 65 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--S
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECC
Confidence 3478888998898875 4444554 2578999999976
No 151
>KOG4454|consensus
Probab=53.69 E-value=2.7 Score=27.17 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=42.1
Q ss_pred CCCceEEEcC----CCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeC
Q psy6962 26 PDFIKMFVGQ----IPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNI 78 (88)
Q Consensus 26 ~~~~~l~v~n----L~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~ 78 (88)
+...+++.|+ |....+++.+...|+..|++..+++..+. .|+++-++++.+-
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~q 133 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQ 133 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhh
Confidence 3456778888 88888999999999999999999988877 4777877777653
No 152
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=52.92 E-value=10 Score=20.76 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFS 50 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~ 50 (88)
...++|-+.+||...++++|++.+.
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3467899999999999999987765
No 153
>KOG2318|consensus
Probab=51.28 E-value=24 Score=26.03 Aligned_cols=39 Identities=13% Similarity=0.334 Sum_probs=30.1
Q ss_pred CCCCceEEEcCCCCCC-CHHHHHHHhhcC----CCeeEEEEeec
Q psy6962 25 DPDFIKMFVGQIPRSM-DEADLTKMFSEY----GRVYNINVLRD 63 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~-~~~~l~~~f~~~----g~v~~~~~~~~ 63 (88)
...+++|-|.|+.|+. ...+|.-+|..| |.|.+|.|...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 3456889999999976 667888888765 58888887654
No 154
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=50.05 E-value=37 Score=21.11 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=26.4
Q ss_pred CHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 41 DEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 41 ~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
..+.|+.+|..++.+......+. .+=..|.|.+.+.|+.|
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~ 47 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRA 47 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHH
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHH
Confidence 34788999999998877654432 33467889888888776
No 155
>PF15063 TC1: Thyroid cancer protein 1
Probab=49.11 E-value=13 Score=19.92 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=24.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCe
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRV 55 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v 55 (88)
..++--+.|+-.+++...|+.+|..-|..
T Consensus 24 ~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 24 ASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 34556678999999999999999999864
No 156
>KOG2135|consensus
Probab=43.35 E-value=10 Score=27.13 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=32.5
Q ss_pred EcCCCCCC-CHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHH
Q psy6962 33 VGQIPRSM-DEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFS 83 (88)
Q Consensus 33 v~nL~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a 83 (88)
+.-.++.. +.++|..-|.+||.|..|.+-.. .-.|.|.|.+..+|
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aea 422 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEA 422 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccc
Confidence 33444544 46889999999999999986443 34677888887776
No 157
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=42.15 E-value=30 Score=18.45 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=17.0
Q ss_pred ceeEEEEEeCCHHHHhchh
Q psy6962 69 SKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 69 ~~g~~fv~f~~~~~a~~ai 87 (88)
.+||.||+=.+..+...||
T Consensus 43 lkGyIyVEA~~~~~V~~ai 61 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAI 61 (84)
T ss_dssp STSEEEEEESSHHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHH
Confidence 7899999999998888876
No 158
>PHA01632 hypothetical protein
Probab=40.23 E-value=39 Score=16.97 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=16.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc
Q psy6962 31 MFVGQIPRSMDEADLTKMFSE 51 (88)
Q Consensus 31 l~v~nL~~~~~~~~l~~~f~~ 51 (88)
+.+-.+|...++++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445689999999999887764
No 159
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=37.77 E-value=38 Score=21.85 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=25.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhh--cCCCeeEEEEe
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFS--EYGRVYNINVL 61 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~--~~g~v~~~~~~ 61 (88)
...+.|||||+..+..-+..++. .+|....+-++
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~v 132 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMV 132 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceEEEE
Confidence 45688999999999998888886 55555444443
No 160
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=37.56 E-value=31 Score=15.69 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=9.8
Q ss_pred CCCCHHHHHHHhhcCC
Q psy6962 38 RSMDEADLTKMFSEYG 53 (88)
Q Consensus 38 ~~~~~~~l~~~f~~~g 53 (88)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678899999998654
No 161
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=37.27 E-value=73 Score=17.42 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=27.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSE-YGRVYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
.-+|||+++..+.+.--..+-+. .+....+-+..++ ...||.|-.+.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~---~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSN---TCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCC---CCCCcEEEecCC
Confidence 34999999888876544444444 3433333333332 355788766644
No 162
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.67 E-value=66 Score=18.64 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=17.9
Q ss_pred CCeeEEEEeecCCCCCceeEEEEEe
Q psy6962 53 GRVYNINVLRDKVTGQSKGLKNTSN 77 (88)
Q Consensus 53 g~v~~~~~~~~~~~g~~~g~~fv~f 77 (88)
|.+..+++.... .|++.|+..+.|
T Consensus 41 Ggv~K~Ria~~g-~GKsGG~R~I~~ 64 (120)
T PF06296_consen 41 GGVRKKRIARKG-KGKSGGYRVIYF 64 (120)
T ss_pred ccEEEEEeccCC-CCCCCceEEEEE
Confidence 567888877664 799999865554
No 163
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=36.16 E-value=55 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=21.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCe
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRV 55 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v 55 (88)
....|+|||+.++..-+..++...-.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 456799999999999999888765444
No 164
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=35.67 E-value=1e+02 Score=18.58 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=33.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCceeEEEEEeCCH
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGLKNTSNITQ 80 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~ 80 (88)
-+||.|.-+..--+.-.+.+|+.|. ++..+.+.........+...-+...+.
T Consensus 88 l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l 140 (153)
T PF14401_consen 88 LSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSEL 140 (153)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhC
Confidence 4689988755545556689999885 567777766653345555555555443
No 165
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.23 E-value=21 Score=25.16 Aligned_cols=59 Identities=12% Similarity=-0.018 Sum_probs=41.3
Q ss_pred ceEEEcCCCCCCCH--------HHHHHHhhc--CCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDE--------ADLTKMFSE--YGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~--------~~l~~~f~~--~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+.+|+.+....... +++...|.. .++...+.+.++-.....+|-.|++|+....|++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 44666666554443 488899988 455566665555445667888999999999998754
No 166
>PRK11901 hypothetical protein; Reviewed
Probab=31.81 E-value=1.2e+02 Score=20.80 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=33.3
Q ss_pred EEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCc-eeEEEEEeCCHHHHhchh
Q psy6962 32 FVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS-KGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 32 ~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~-~g~~fv~f~~~~~a~~ai 87 (88)
|.=.|.-...++.|+.+....+ +..+.+......|+. +-..+-.|.+.++|..||
T Consensus 246 YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai 301 (327)
T PRK11901 246 YTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAI 301 (327)
T ss_pred eEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHH
Confidence 3334444556777888777665 334444444334442 223556799999999987
No 167
>PRK10905 cell division protein DamX; Validated
Probab=31.41 E-value=1.5e+02 Score=20.44 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=31.0
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCC-ceeEEEEEeCCHHHHhchh
Q psy6962 35 QIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ-SKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 35 nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~-~~g~~fv~f~~~~~a~~ai 87 (88)
.|.-..+.+.|+.+-.+.|- ....+......|+ -.-..+-.|.+.++|+.||
T Consensus 251 QL~A~Ss~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~Ai 303 (328)
T PRK10905 251 QLSSSSNYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAV 303 (328)
T ss_pred EEEecCCHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHH
Confidence 33344556777777766643 3222333333454 3334667899999999987
No 168
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=31.10 E-value=80 Score=22.96 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=27.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCce
Q psy6962 31 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 70 (88)
Q Consensus 31 l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~ 70 (88)
|=|||||..-.++-|+++..+|-. +++.|..||.-+
T Consensus 281 IDvGnlpk~KAeqyl~~iM~k~kn----klvYDa~TGevr 316 (501)
T PF07230_consen 281 IDVGNLPKQKAEQYLRDIMNKYKN----KLVYDASTGEVR 316 (501)
T ss_pred EECCCCChHhHHHHHHHHHHHhcc----eeeecCCCCeec
Confidence 345999999999999999998833 566666666533
No 169
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=30.18 E-value=1e+02 Score=16.88 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=27.2
Q ss_pred EEEcCCCCCCCHHHH---HHHhhcCCCeeEEEE--eecCCCCCceeEEEEEe
Q psy6962 31 MFVGQIPRSMDEADL---TKMFSEYGRVYNINV--LRDKVTGQSKGLKNTSN 77 (88)
Q Consensus 31 l~v~nL~~~~~~~~l---~~~f~~~g~v~~~~~--~~~~~~g~~~g~~fv~f 77 (88)
.|+.+||.++.+..+ +..+..+.+-..+.. ......+.+.|++.+.+
T Consensus 13 a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 13 AFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 588999999987665 455555554333333 12334566777766554
No 170
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=29.48 E-value=99 Score=19.75 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=20.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCC
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGR 54 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~ 54 (88)
.+.++|+|+..+...+..++...|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 3778999999999999999864443
No 171
>PRK15464 cold shock-like protein CspH; Provisional
Probab=27.94 E-value=80 Score=16.32 Aligned_cols=10 Identities=10% Similarity=-0.150 Sum_probs=7.1
Q ss_pred ceeEEEEEeC
Q psy6962 69 SKGLKNTSNI 78 (88)
Q Consensus 69 ~~g~~fv~f~ 78 (88)
.+||+||.=.
T Consensus 15 ~KGfGFI~~~ 24 (70)
T PRK15464 15 KSGKGFIIPS 24 (70)
T ss_pred CCCeEEEccC
Confidence 4788888644
No 172
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=27.59 E-value=48 Score=16.24 Aligned_cols=11 Identities=18% Similarity=0.048 Sum_probs=8.0
Q ss_pred ceeEEEEEeCC
Q psy6962 69 SKGLKNTSNIT 79 (88)
Q Consensus 69 ~~g~~fv~f~~ 79 (88)
++||+|+...+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 57999998765
No 173
>PHA02531 20 portal vertex protein; Provisional
Probab=26.71 E-value=60 Score=23.58 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=27.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCce
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 70 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~ 70 (88)
.|=|||||..-.++-|+++..+|-. +++.|..||.-+
T Consensus 283 YiDVGNlPk~KAeqYlr~vm~~ykN----klvYDa~TGeir 319 (514)
T PHA02531 283 YIDVGNLPKRKAEEYLNNVMQRYKN----RVVYDANTGKVK 319 (514)
T ss_pred EEEcCCCChhhHHHHHHHHHHHhhh----hEEEeCCCCeec
Confidence 4556999999999999999998843 566666666533
No 174
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=25.78 E-value=1.1e+02 Score=19.87 Aligned_cols=22 Identities=18% Similarity=0.310 Sum_probs=18.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSE 51 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~ 51 (88)
...|+|+|+.++...+..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 4678999999998888888753
No 175
>PRK10943 cold shock-like protein CspC; Provisional
Probab=25.71 E-value=88 Score=15.99 Aligned_cols=10 Identities=30% Similarity=0.302 Sum_probs=7.0
Q ss_pred ceeEEEEEeC
Q psy6962 69 SKGLKNTSNI 78 (88)
Q Consensus 69 ~~g~~fv~f~ 78 (88)
.+||+||.=.
T Consensus 14 ~kGfGFI~~~ 23 (69)
T PRK10943 14 SKGFGFITPA 23 (69)
T ss_pred CCCcEEEecC
Confidence 4788888643
No 176
>KOG0156|consensus
Probab=25.15 E-value=1.2e+02 Score=21.75 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=30.1
Q ss_pred EEcCCCCCCC---HHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 32 FVGQIPRSMD---EADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 32 ~v~nL~~~~~---~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
.||||+.-.. ...+..+-++||++..+++-.. -.|.-.+.+.|..+
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~ 84 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEV 84 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHH
Confidence 5788866554 3566777779999998775322 24555666666654
No 177
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.64 E-value=1.6e+02 Score=17.66 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=17.2
Q ss_pred EeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 60 VLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 60 ~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
|.+++.+.+...++|..-.+.+....|||
T Consensus 97 Iak~~~~~~~~CHVF~s~~~~~~I~~aIG 125 (148)
T cd01212 97 ITKHPLLQRFACHVFKSSESTRPVAEAVG 125 (148)
T ss_pred EeccCCCCceEEEEEEeCCcchHHHHHHH
Confidence 34444445555566666666666666665
No 178
>PF14268 YoaP: YoaP-like
Probab=23.16 E-value=95 Score=14.67 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=10.9
Q ss_pred EEEEEeCCHHHHhch
Q psy6962 72 LKNTSNITQDFSTTT 86 (88)
Q Consensus 72 ~~fv~f~~~~~a~~a 86 (88)
+-++...+.|+|+.+
T Consensus 2 ~~~i~i~t~e~Aq~~ 16 (44)
T PF14268_consen 2 FKLIKIDTLEKAQNA 16 (44)
T ss_pred cEEEEeccHHHHhcC
Confidence 346778888888865
No 179
>KOG0738|consensus
Probab=23.10 E-value=1e+02 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=16.2
Q ss_pred CCceEEE---cCCCCCCCHHHHHHH
Q psy6962 27 DFIKMFV---GQIPRSMDEADLTKM 48 (88)
Q Consensus 27 ~~~~l~v---~nL~~~~~~~~l~~~ 48 (88)
..+.||| .|+||+++++-++.+
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrRRl 373 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRRRL 373 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHHHH
Confidence 3456666 799999998876654
No 180
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=23.06 E-value=62 Score=16.73 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=16.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMF 49 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f 49 (88)
+..++.+|+|.+|..+-.+.-..++
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HHcCceEEECCCChHHHHcCcchHH
Confidence 3456889999999877554433333
No 181
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.80 E-value=1.4e+02 Score=16.08 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=15.8
Q ss_pred eeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 55 VYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 55 v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
|..+++-.-...|+.++||-|.|.+
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 4455555544447778888777765
No 182
>PRK15463 cold shock-like protein CspF; Provisional
Probab=21.96 E-value=52 Score=16.99 Aligned_cols=10 Identities=10% Similarity=-0.037 Sum_probs=7.6
Q ss_pred ceeEEEEEeC
Q psy6962 69 SKGLKNTSNI 78 (88)
Q Consensus 69 ~~g~~fv~f~ 78 (88)
.+||+||.=.
T Consensus 15 ~kGfGFI~~~ 24 (70)
T PRK15463 15 KSGKGLITPS 24 (70)
T ss_pred CCceEEEecC
Confidence 4799998754
No 183
>KOG4574|consensus
Probab=21.70 E-value=41 Score=26.16 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=37.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
+.++.|.+-..+...|-.++..||.+......++ .-.+.|+|.+.+.|-.|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a 350 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILA 350 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHh
Confidence 3555666667778889999999999888754333 34688889887777655
No 184
>KOG0291|consensus
Probab=21.32 E-value=57 Score=25.09 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=15.2
Q ss_pred ceeEEEEEeCCHHHHhchh
Q psy6962 69 SKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 69 ~~g~~fv~f~~~~~a~~ai 87 (88)
..||||+.|..+..+.+|+
T Consensus 380 ~SgfC~vTFteHts~Vt~v 398 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAV 398 (893)
T ss_pred cCceEEEEeccCCCceEEE
Confidence 3589999999988776654
No 185
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=21.24 E-value=1.2e+02 Score=15.02 Aligned_cols=19 Identities=0% Similarity=-0.151 Sum_probs=15.0
Q ss_pred CceeEEEEEeCCHHHHhch
Q psy6962 68 QSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 68 ~~~g~~fv~f~~~~~a~~a 86 (88)
...-..+++|.|.+.|.+.
T Consensus 37 ~~~~~viieFPs~~aa~~~ 55 (65)
T PF07045_consen 37 DPDRVVIIEFPSMEAAKAW 55 (65)
T ss_dssp SSSEEEEEEESSHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHH
Confidence 3456799999999998764
No 186
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=20.91 E-value=58 Score=17.05 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=6.9
Q ss_pred ceeEEEEEe
Q psy6962 69 SKGLKNTSN 77 (88)
Q Consensus 69 ~~g~~fv~f 77 (88)
.+||+||.=
T Consensus 12 ~KGfGFI~~ 20 (74)
T PRK09937 12 AKGFGFICP 20 (74)
T ss_pred CCCeEEEee
Confidence 479999854
No 187
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=20.87 E-value=1.4e+02 Score=15.37 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=20.4
Q ss_pred HHHHHHHhhcCCCeeEEEEeecCCCCCceeEE
Q psy6962 42 EADLTKMFSEYGRVYNINVLRDKVTGQSKGLK 73 (88)
Q Consensus 42 ~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~ 73 (88)
+..|...|-+-..+..+.+.-.+.-++..||.
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 45677777777788888777655444444443
No 188
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=20.81 E-value=1.7e+02 Score=16.26 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=11.5
Q ss_pred eEEEEeecCCCCCceeEEEEEeCC
Q psy6962 56 YNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 56 ~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
..+++-.-...|+-++||-|.|.+
T Consensus 4 TdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 4 TDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred EEEEEEEeCCCCcEEEEEEEEECC
Confidence 344443332245566666655543
No 189
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.31 E-value=1.2e+02 Score=14.10 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=19.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCC
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGR 54 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~ 54 (88)
..+|+.+.........|.++...+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 35677666657788899999998886
No 190
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=20.22 E-value=56 Score=16.75 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=7.9
Q ss_pred ceeEEEEEeCC
Q psy6962 69 SKGLKNTSNIT 79 (88)
Q Consensus 69 ~~g~~fv~f~~ 79 (88)
.+||+||.=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 47999987543
No 191
>PRK14998 cold shock-like protein CspD; Provisional
Probab=20.00 E-value=62 Score=16.87 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=7.5
Q ss_pred ceeEEEEEeC
Q psy6962 69 SKGLKNTSNI 78 (88)
Q Consensus 69 ~~g~~fv~f~ 78 (88)
.+||+||.=.
T Consensus 12 ~kGfGFI~~~ 21 (73)
T PRK14998 12 AKGFGFICPE 21 (73)
T ss_pred CCceEEEecC
Confidence 4799998643
Done!