Query psy6962
Match_columns 88
No_of_seqs 103 out of 1618
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 23:13:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 2.2E-20 7.4E-25 103.7 9.1 62 26-87 17-78 (99)
2 3s8s_A Histone-lysine N-methyl 99.8 8.3E-20 2.8E-24 103.1 9.1 61 27-87 5-65 (110)
3 3s7r_A Heterogeneous nuclear r 99.8 2E-19 6.7E-24 97.1 9.0 64 24-87 7-70 (87)
4 2cqg_A TDP-43, TAR DNA-binding 99.8 7.5E-19 2.6E-23 97.5 9.9 65 23-87 10-74 (103)
5 2lxi_A RNA-binding protein 10; 99.8 2.6E-20 9.1E-25 101.8 3.9 59 29-87 2-61 (91)
6 2dgp_A Bruno-like 4, RNA bindi 99.8 2.2E-19 7.6E-24 100.1 7.6 67 21-87 6-72 (106)
7 1s79_A Lupus LA protein; RRM, 99.8 3.2E-19 1.1E-23 99.7 8.1 61 26-87 9-69 (103)
8 2la6_A RNA-binding protein FUS 99.8 9.1E-19 3.1E-23 96.6 9.7 66 22-87 7-80 (99)
9 2cq0_A Eukaryotic translation 99.8 8.4E-19 2.9E-23 97.3 9.2 66 22-87 9-74 (103)
10 2dh8_A DAZ-associated protein 99.8 6.4E-19 2.2E-23 98.1 8.7 66 22-87 10-75 (105)
11 1x4e_A RNA binding motif, sing 99.8 5.4E-19 1.8E-23 95.0 7.9 62 26-87 3-64 (85)
12 2lkz_A RNA-binding protein 5; 99.8 1.8E-19 6E-24 99.5 6.0 60 28-87 9-70 (95)
13 2cqc_A Arginine/serine-rich sp 99.8 1.4E-18 4.7E-23 95.0 9.5 65 23-87 10-74 (95)
14 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.7E-19 3.3E-23 94.2 8.5 62 26-87 4-65 (87)
15 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-18 6.4E-23 97.6 10.0 66 22-87 9-74 (115)
16 2dgs_A DAZ-associated protein 99.8 1.3E-18 4.3E-23 96.0 9.1 63 25-87 7-69 (99)
17 2dnh_A Bruno-like 5, RNA bindi 99.8 2.5E-18 8.6E-23 95.6 10.2 63 24-87 11-73 (105)
18 1x5u_A Splicing factor 3B subu 99.8 1.1E-18 3.8E-23 97.1 8.6 65 23-87 10-74 (105)
19 2div_A TRNA selenocysteine ass 99.8 1.2E-18 4.2E-23 96.0 8.7 63 25-87 6-69 (99)
20 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-18 4.3E-23 95.0 8.6 65 23-87 11-75 (94)
21 1x4h_A RNA-binding protein 28; 99.8 1.5E-18 5.1E-23 97.3 9.1 63 25-87 12-74 (111)
22 2cqd_A RNA-binding region cont 99.8 1.8E-18 6.2E-23 97.8 9.5 65 23-87 12-76 (116)
23 2dnm_A SRP46 splicing factor; 99.8 7.8E-19 2.7E-23 97.4 7.7 64 24-87 9-72 (103)
24 3md1_A Nuclear and cytoplasmic 99.8 1.7E-18 6E-23 92.5 8.7 59 29-87 2-60 (83)
25 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.7E-19 3.3E-23 93.9 7.7 63 25-87 4-66 (85)
26 2dnz_A Probable RNA-binding pr 99.8 1.7E-18 5.7E-23 94.7 8.8 62 26-87 3-64 (95)
27 2rs2_A Musashi-1, RNA-binding 99.8 5.7E-19 1.9E-23 99.3 7.0 64 24-87 21-84 (109)
28 3p5t_L Cleavage and polyadenyl 99.8 3.6E-19 1.2E-23 96.9 6.0 59 29-87 2-62 (90)
29 1p27_B RNA-binding protein 8A; 99.8 2E-18 6.9E-23 96.1 9.1 63 25-87 20-82 (106)
30 2jrs_A RNA-binding protein 39; 99.8 2.3E-18 7.8E-23 96.7 9.4 65 23-87 21-85 (108)
31 2dng_A Eukaryotic translation 99.8 3.9E-18 1.3E-22 94.6 10.1 65 22-87 9-73 (103)
32 2do4_A Squamous cell carcinoma 99.8 3.8E-18 1.3E-22 94.2 9.9 63 24-87 13-75 (100)
33 1whw_A Hypothetical protein ri 99.8 1.7E-18 6E-23 95.4 8.1 63 25-87 5-67 (99)
34 4f25_A Polyadenylate-binding p 99.8 1.5E-18 5E-23 98.4 7.9 59 27-87 4-62 (115)
35 2cpz_A CUG triplet repeat RNA- 99.8 2.6E-18 8.7E-23 97.1 8.9 64 24-87 21-84 (115)
36 3n9u_C Cleavage and polyadenyl 99.8 1.8E-18 6.1E-23 102.9 8.5 61 27-87 54-116 (156)
37 2cph_A RNA binding motif prote 99.8 2.4E-18 8.3E-23 95.9 8.6 65 23-87 10-75 (107)
38 3ns6_A Eukaryotic translation 99.8 3.2E-19 1.1E-23 98.9 4.9 60 28-87 6-71 (100)
39 1x5s_A Cold-inducible RNA-bind 99.8 2.1E-18 7.2E-23 95.5 8.2 64 24-87 8-71 (102)
40 1wg5_A Heterogeneous nuclear r 99.8 2.8E-18 9.5E-23 95.6 8.7 62 25-87 12-74 (104)
41 2dhg_A TRNA selenocysteine ass 99.8 4.9E-18 1.7E-22 94.3 9.4 61 26-87 7-68 (104)
42 2mss_A Protein (musashi1); RNA 99.8 9E-19 3.1E-23 92.1 5.9 58 30-87 1-58 (75)
43 3ucg_A Polyadenylate-binding p 99.8 3.7E-18 1.3E-22 92.3 8.2 60 28-87 6-65 (89)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-18 5.1E-23 96.1 6.8 64 24-87 8-71 (102)
45 2khc_A Testis-specific RNP-typ 99.8 3.2E-18 1.1E-22 97.0 8.2 63 25-87 37-99 (118)
46 2d9p_A Polyadenylate-binding p 99.8 7.5E-18 2.6E-22 93.4 9.6 62 24-87 11-72 (103)
47 2ywk_A Putative RNA-binding pr 99.8 4E-18 1.4E-22 93.2 8.3 63 24-87 12-74 (95)
48 1oo0_B CG8781-PA, drosophila Y 99.8 2.8E-18 9.7E-23 96.2 7.9 64 24-87 22-85 (110)
49 1wi8_A EIF-4B, eukaryotic tran 99.8 4E-18 1.4E-22 94.7 8.4 63 24-87 11-74 (104)
50 1wez_A HnRNP H', FTP-3, hetero 99.8 4.3E-18 1.5E-22 94.8 8.4 61 25-87 12-72 (102)
51 2cpe_A RNA-binding protein EWS 99.8 3.4E-18 1.2E-22 96.2 8.1 66 22-87 9-82 (113)
52 2x1f_A MRNA 3'-END-processing 99.8 3.1E-18 1.1E-22 94.0 7.7 60 28-87 2-61 (96)
53 1x5o_A RNA binding motif, sing 99.8 1.1E-17 3.6E-22 94.3 10.0 63 24-87 21-83 (114)
54 1x5t_A Splicing factor 3B subu 99.8 1.6E-18 5.6E-23 94.9 6.5 62 26-87 3-65 (96)
55 2do0_A HnRNP M, heterogeneous 99.8 1.2E-17 4.1E-22 94.0 10.1 64 23-87 10-73 (114)
56 1uaw_A Mouse-musashi-1; RNP-ty 99.8 7.6E-19 2.6E-23 92.7 4.8 59 29-87 1-59 (77)
57 2m2b_A RNA-binding protein 10; 99.8 1E-18 3.4E-23 101.0 5.7 63 24-87 19-83 (131)
58 1u6f_A Tcubp1, RNA-binding pro 99.8 5.4E-18 1.9E-22 98.4 8.7 63 25-87 39-101 (139)
59 2cpf_A RNA binding motif prote 99.8 3.3E-18 1.1E-22 94.1 7.4 62 26-87 3-67 (98)
60 4f02_A Polyadenylate-binding p 99.8 4.3E-18 1.5E-22 105.0 8.7 63 25-87 12-74 (213)
61 2kxn_B Transformer-2 protein h 99.8 5.2E-18 1.8E-22 98.0 8.5 63 25-87 43-105 (129)
62 2cpy_A RNA-binding protein 12; 99.8 2.7E-18 9.2E-23 97.1 7.1 63 24-87 11-74 (114)
63 1x4b_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 98.1 5.9 60 28-87 27-86 (116)
64 1h2v_Z 20 kDa nuclear CAP bind 99.8 9.8E-18 3.4E-22 99.1 9.5 63 25-87 36-98 (156)
65 1iqt_A AUF1, heterogeneous nuc 99.8 7.7E-19 2.6E-23 92.3 4.2 58 30-87 1-58 (75)
66 3ulh_A THO complex subunit 4; 99.8 1.1E-17 3.7E-22 93.3 9.1 63 24-87 25-87 (107)
67 2xs2_A Deleted in azoospermia- 99.8 2E-18 6.9E-23 95.6 6.1 60 27-87 8-67 (102)
68 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 8.7E-18 3E-22 97.4 8.8 64 24-87 59-122 (140)
69 2cqp_A RNA-binding protein 12; 99.7 4.6E-18 1.6E-22 93.5 7.1 63 25-87 12-74 (98)
70 2fy1_A RNA-binding motif prote 99.7 6.8E-18 2.3E-22 95.8 8.0 61 26-87 5-65 (116)
71 2cq4_A RNA binding motif prote 99.7 2.5E-18 8.6E-23 97.0 6.0 60 28-87 25-84 (114)
72 1sjq_A Polypyrimidine tract-bi 99.7 4.5E-18 1.5E-22 95.4 7.0 58 24-87 12-69 (105)
73 2db1_A Heterogeneous nuclear r 99.7 7.8E-18 2.7E-22 95.8 8.0 62 25-87 14-78 (118)
74 2dnl_A Cytoplasmic polyadenyla 99.7 3.1E-18 1E-22 96.9 5.9 61 26-87 6-69 (114)
75 3ex7_B RNA-binding protein 8A; 99.7 7.8E-18 2.7E-22 96.4 7.7 64 24-87 18-81 (126)
76 2hgl_A HNRPF protein, heteroge 99.7 8.7E-18 3E-22 98.0 7.7 62 25-87 41-105 (136)
77 1l3k_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 100.7 8.6 63 25-87 10-72 (196)
78 1p1t_A Cleavage stimulation fa 99.7 8.6E-18 2.9E-22 93.2 7.1 61 27-87 7-67 (104)
79 2dis_A Unnamed protein product 99.7 8.5E-18 2.9E-22 94.0 7.1 62 26-87 6-69 (109)
80 4a8x_A RNA-binding protein wit 99.7 7.1E-18 2.4E-22 90.9 6.5 61 27-87 3-64 (88)
81 2dnn_A RNA-binding protein 12; 99.7 7.1E-18 2.4E-22 95.1 6.7 59 27-87 15-73 (109)
82 2cq3_A RNA-binding protein 9; 99.7 4.4E-17 1.5E-21 90.3 9.9 64 22-87 9-72 (103)
83 2krb_A Eukaryotic translation 99.7 6.9E-18 2.3E-22 90.1 6.3 57 29-87 2-64 (81)
84 2ek1_A RNA-binding protein 12; 99.7 4.9E-18 1.7E-22 92.8 5.8 62 26-87 13-74 (95)
85 2kt5_A RNA and export factor-b 99.7 3.1E-17 1.1E-21 93.7 9.3 62 25-87 32-93 (124)
86 2dgv_A HnRNP M, heterogeneous 99.7 3.8E-17 1.3E-21 88.8 9.1 61 25-87 5-65 (92)
87 1wel_A RNA-binding protein 12; 99.7 7.8E-18 2.7E-22 96.4 6.4 63 25-87 22-84 (124)
88 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.4E-18 1.5E-22 94.2 5.2 62 25-87 16-78 (100)
89 2hgm_A HNRPF protein, heteroge 99.7 1.3E-17 4.3E-22 96.2 7.3 61 25-87 39-101 (126)
90 2dgw_A Probable RNA-binding pr 99.7 4.6E-17 1.6E-21 88.4 9.2 61 25-87 7-67 (91)
91 2jwn_A Embryonic polyadenylate 99.7 1.5E-17 5.1E-22 94.9 7.5 60 28-87 36-95 (124)
92 3d2w_A TAR DNA-binding protein 99.7 1.3E-17 4.4E-22 90.8 6.9 59 25-88 8-66 (89)
93 3q2s_C Cleavage and polyadenyl 99.7 1.5E-17 5.2E-22 104.1 8.0 61 27-87 67-129 (229)
94 2lmi_A GRSF-1, G-rich sequence 99.7 7.1E-18 2.4E-22 94.4 5.9 62 25-87 8-72 (107)
95 2dha_A FLJ20171 protein; RRM d 99.7 1.1E-17 3.6E-22 96.2 6.7 61 26-87 21-85 (123)
96 2kn4_A Immunoglobulin G-bindin 99.7 3.3E-17 1.1E-21 96.8 8.8 62 26-87 68-129 (158)
97 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4E-17 1.4E-21 97.4 9.2 62 26-87 70-131 (165)
98 2cqi_A Nucleolysin TIAR; RNA r 99.7 5E-17 1.7E-21 90.1 9.0 62 24-87 11-72 (103)
99 2cq1_A PTB-like protein L; RRM 99.7 4.4E-17 1.5E-21 90.7 8.5 57 25-87 12-68 (101)
100 2ad9_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 93.8 7.9 57 25-87 28-84 (119)
101 2nlw_A Eukaryotic translation 99.7 2.1E-17 7.3E-22 92.2 6.6 59 27-87 14-78 (105)
102 2ki2_A SS-DNA binding protein 99.7 5.2E-18 1.8E-22 92.0 3.9 58 29-87 2-59 (90)
103 2cjk_A Nuclear polyadenylated 99.7 1.8E-17 6.1E-22 98.0 6.5 61 27-87 2-62 (167)
104 3r27_A HnRNP L, heterogeneous 99.7 6E-17 2E-21 90.0 8.0 56 26-87 19-74 (100)
105 2err_A Ataxin-2-binding protei 99.7 3E-17 1E-21 92.1 6.9 64 22-87 23-86 (109)
106 1x4d_A Matrin 3; structural ge 99.7 3.9E-17 1.3E-21 91.1 7.1 58 24-87 11-69 (102)
107 3nmr_A Cugbp ELAV-like family 99.7 6E-17 2.1E-21 96.1 8.2 61 27-87 2-64 (175)
108 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5.1E-22 96.7 5.2 62 26-87 45-106 (135)
109 2cpi_A CCR4-NOT transcription 99.7 5.7E-17 2E-21 91.2 7.2 64 24-87 11-80 (111)
110 1x4a_A Splicing factor, argini 99.7 2E-16 6.8E-21 88.5 9.3 61 24-87 18-78 (109)
111 2hgn_A Heterogeneous nuclear r 99.7 1.1E-17 3.9E-22 97.8 4.3 61 25-87 43-103 (139)
112 1wex_A Hypothetical protein (r 99.7 1.6E-16 5.5E-21 88.8 8.6 56 26-87 13-68 (104)
113 1wf0_A TDP-43, TAR DNA-binding 99.7 3.1E-17 1.1E-21 88.7 5.5 58 26-88 3-60 (88)
114 1fxl_A Paraneoplastic encephal 99.7 1.7E-16 5.7E-21 93.5 8.9 60 28-87 2-61 (167)
115 2dgx_A KIAA0430 protein; RRM d 99.7 8E-17 2.7E-21 88.5 6.9 59 26-87 7-69 (96)
116 2fc9_A NCL protein; structure 99.7 1.7E-16 5.7E-21 87.7 7.7 60 24-87 11-70 (101)
117 3md3_A Nuclear and cytoplasmic 99.7 6.8E-16 2.3E-20 90.7 10.7 66 22-87 81-146 (166)
118 2j8a_A Histone-lysine N-methyl 99.7 8.7E-17 3E-21 92.8 6.2 51 29-79 3-57 (136)
119 2wbr_A GW182, gawky, LD47780P; 99.7 1.2E-16 4E-21 86.8 6.2 55 27-87 6-60 (89)
120 2lcw_A RNA-binding protein FUS 99.5 3.2E-18 1.1E-22 96.9 0.0 63 25-87 4-74 (116)
121 1b7f_A Protein (SXL-lethal pro 99.7 1.7E-16 5.9E-21 93.7 7.2 60 28-87 3-62 (168)
122 1fj7_A Nucleolin RBD1, protein 99.7 1E-17 3.5E-22 92.6 1.8 61 26-87 15-75 (101)
123 2fc8_A NCL protein; structure 99.7 5.4E-16 1.9E-20 85.7 8.7 63 22-87 9-71 (102)
124 1x4f_A Matrin 3; structural ge 99.7 1.3E-16 4.5E-21 90.3 6.2 57 25-87 22-79 (112)
125 1x4c_A Splicing factor, argini 99.7 6E-16 2E-20 86.6 8.7 55 26-87 13-67 (108)
126 1l3k_A Heterogeneous nuclear r 99.7 6.3E-16 2.2E-20 93.3 9.4 61 27-87 103-163 (196)
127 2g4b_A Splicing factor U2AF 65 99.7 8.2E-16 2.8E-20 91.1 9.6 63 25-87 91-153 (172)
128 2ytc_A PRE-mRNA-splicing facto 99.7 8E-16 2.8E-20 82.4 8.5 57 25-87 9-65 (85)
129 3lqv_A PRE-mRNA branch site pr 99.7 4.4E-16 1.5E-20 87.7 7.8 60 25-87 5-64 (115)
130 2a3j_A U1 small nuclear ribonu 99.7 3.8E-16 1.3E-20 90.1 7.5 59 26-87 27-89 (127)
131 2voo_A Lupus LA protein; RNA-b 99.7 5.5E-16 1.9E-20 94.8 8.6 59 28-87 109-167 (193)
132 2cpx_A Hypothetical protein FL 99.7 4.9E-17 1.7E-21 91.6 3.6 63 25-87 22-84 (115)
133 2f3j_A RNA and export factor b 99.7 3.6E-16 1.2E-20 94.5 7.6 61 26-87 86-146 (177)
134 1why_A Hypothetical protein ri 99.7 1E-15 3.5E-20 84.0 8.3 57 25-87 14-70 (97)
135 2dnq_A RNA-binding protein 4B; 99.6 9.8E-16 3.4E-20 83.0 7.8 55 25-87 5-59 (90)
136 2la4_A Nuclear and cytoplasmic 99.6 7.7E-16 2.6E-20 85.0 7.5 57 25-87 24-80 (101)
137 2qfj_A FBP-interacting repress 99.6 6E-16 2.1E-20 94.6 7.7 60 28-87 28-87 (216)
138 2cpj_A Non-POU domain-containi 99.6 8.3E-16 2.8E-20 84.6 7.5 59 23-87 10-68 (99)
139 2jvr_A Nucleolar protein 3; RN 99.6 2.6E-16 8.8E-21 88.9 5.4 59 25-87 25-84 (111)
140 3md3_A Nuclear and cytoplasmic 99.6 4.6E-16 1.6E-20 91.5 6.7 58 29-87 1-58 (166)
141 3pgw_S U1-70K; protein-RNA com 99.6 7E-16 2.4E-20 104.1 8.4 62 26-87 100-161 (437)
142 1b7f_A Protein (SXL-lethal pro 99.6 2.9E-15 9.9E-20 88.4 10.0 63 25-87 86-148 (168)
143 2e5g_A U6 snRNA-specific termi 99.6 2.4E-15 8.3E-20 82.1 8.9 57 26-87 6-62 (94)
144 1fxl_A Paraneoplastic encephal 99.6 2E-15 6.8E-20 88.8 9.1 62 26-87 86-147 (167)
145 3nmr_A Cugbp ELAV-like family 99.6 1.6E-15 5.6E-20 89.9 8.6 60 27-87 94-153 (175)
146 2qfj_A FBP-interacting repress 99.6 2.2E-15 7.6E-20 92.1 9.1 61 27-87 124-184 (216)
147 2e5j_A Methenyltetrahydrofolat 99.6 1.4E-15 4.9E-20 83.5 7.4 58 25-87 16-73 (97)
148 2jvo_A Nucleolar protein 3; nu 99.6 1.2E-15 4.2E-20 85.5 7.1 56 24-87 27-82 (108)
149 2hvz_A Splicing factor, argini 99.6 7.2E-16 2.5E-20 85.1 6.0 54 29-87 1-54 (101)
150 1fjc_A Nucleolin RBD2, protein 99.6 4.5E-16 1.5E-20 85.2 5.1 58 25-87 13-70 (96)
151 2cjk_A Nuclear polyadenylated 99.6 5.5E-16 1.9E-20 91.5 5.7 60 28-87 87-146 (167)
152 2xnq_A Nuclear polyadenylated 99.6 2.3E-15 8E-20 82.8 7.7 56 24-87 18-74 (97)
153 1x4g_A Nucleolysin TIAR; struc 99.6 1.4E-15 4.9E-20 85.0 6.8 57 25-87 22-78 (109)
154 2i2y_A Fusion protein consists 99.6 1.5E-15 5.1E-20 89.2 7.2 59 24-87 69-127 (150)
155 1nu4_A U1A RNA binding domain; 99.6 3.3E-16 1.1E-20 85.8 3.8 59 26-87 6-68 (97)
156 2yh0_A Splicing factor U2AF 65 99.6 5.1E-15 1.8E-19 89.4 9.1 62 26-87 112-173 (198)
157 1wf1_A RNA-binding protein RAL 99.6 3.6E-15 1.2E-19 83.5 7.6 54 26-87 25-79 (110)
158 2kvi_A Nuclear polyadenylated 99.6 2.7E-15 9.1E-20 82.3 6.9 55 25-87 7-62 (96)
159 2cq2_A Hypothetical protein LO 99.6 1.1E-15 3.6E-20 86.8 5.2 56 26-87 23-80 (114)
160 2dgu_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 82.6 7.3 54 26-87 9-62 (103)
161 3beg_B Splicing factor, argini 99.6 1.2E-15 4.2E-20 86.3 5.1 54 27-87 15-68 (115)
162 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-14 4.4E-19 79.8 8.7 56 24-87 11-68 (99)
163 3egn_A RNA-binding protein 40; 99.6 3.7E-16 1.3E-20 91.1 2.5 62 25-87 42-109 (143)
164 2dgt_A RNA-binding protein 30; 99.6 8.2E-15 2.8E-19 79.6 7.7 55 25-87 7-61 (92)
165 2hzc_A Splicing factor U2AF 65 99.6 4.1E-15 1.4E-19 79.8 6.3 56 26-87 4-70 (87)
166 1whx_A Hypothetical protein ri 99.6 2.9E-15 1E-19 84.3 5.9 54 28-87 10-63 (111)
167 1sjr_A Polypyrimidine tract-bi 99.6 9.5E-15 3.3E-19 87.4 7.9 58 26-87 44-101 (164)
168 2dnp_A RNA-binding protein 14; 99.6 6.9E-15 2.4E-19 79.6 6.7 55 25-87 6-60 (90)
169 4f02_A Polyadenylate-binding p 99.6 9E-15 3.1E-19 90.1 8.0 59 27-87 102-160 (213)
170 2cqh_A IGF-II mRNA-binding pro 99.6 2.9E-15 1E-19 81.5 4.7 56 25-87 5-61 (93)
171 1wg1_A KIAA1579 protein, homol 99.6 5.2E-15 1.8E-19 79.9 5.6 54 27-87 4-57 (88)
172 2e44_A Insulin-like growth fac 99.6 9.2E-15 3.2E-19 79.9 6.3 58 26-87 13-71 (96)
173 3sde_A Paraspeckle component 1 99.6 2.3E-14 7.9E-19 90.6 9.0 60 27-87 95-154 (261)
174 3smz_A Protein raver-1, ribonu 99.6 3.3E-14 1.1E-18 90.3 9.2 62 26-87 93-154 (284)
175 3pgw_A U1-A; protein-RNA compl 99.6 2.3E-14 8E-19 91.0 8.4 59 26-87 7-69 (282)
176 3zzy_A Polypyrimidine tract-bi 99.5 2.8E-14 9.5E-19 82.6 7.9 57 26-87 26-83 (130)
177 2adc_A Polypyrimidine tract-bi 99.5 1.5E-14 5E-19 90.0 6.7 66 17-87 23-89 (229)
178 1x5p_A Negative elongation fac 99.5 5.3E-14 1.8E-18 77.1 8.2 55 25-87 12-66 (97)
179 3tyt_A Heterogeneous nuclear r 99.5 1.7E-14 5.7E-19 88.9 6.8 56 27-87 3-59 (205)
180 2e5i_A Heterogeneous nuclear r 99.5 7.1E-14 2.4E-18 80.3 9.0 54 28-87 25-79 (124)
181 3tyt_A Heterogeneous nuclear r 99.5 1.2E-14 4.3E-19 89.4 5.7 59 27-87 122-182 (205)
182 1fje_B Nucleolin RBD12, protei 99.5 2.9E-15 9.8E-20 89.2 1.8 63 24-87 9-71 (175)
183 1fje_B Nucleolin RBD12, protei 99.5 9.9E-14 3.4E-18 82.5 8.2 59 24-87 95-153 (175)
184 2ghp_A U4/U6 snRNA-associated 99.5 5.9E-14 2E-18 89.5 6.8 62 26-87 208-271 (292)
185 3smz_A Protein raver-1, ribonu 99.5 1.6E-13 5.4E-18 87.2 8.6 61 26-87 182-243 (284)
186 3sde_A Paraspeckle component 1 99.5 9.4E-14 3.2E-18 87.8 7.4 58 24-87 18-75 (261)
187 2ghp_A U4/U6 snRNA-associated 99.5 9.3E-14 3.2E-18 88.6 7.2 61 25-87 38-98 (292)
188 3u1l_A PRE-mRNA-splicing facto 99.5 8.6E-14 3E-18 87.7 6.5 58 24-87 130-196 (240)
189 2bz2_A Negative elongation fac 99.5 1.8E-13 6.1E-18 78.1 6.5 54 26-87 37-90 (121)
190 2pe8_A Splicing factor 45; RRM 99.5 5.1E-13 1.7E-17 74.6 8.2 62 26-87 6-73 (105)
191 3tht_A Alkylated DNA repair pr 99.4 2E-13 6.8E-18 89.9 6.8 58 24-87 14-73 (345)
192 2diu_A KIAA0430 protein; struc 99.4 4.1E-13 1.4E-17 73.6 6.8 50 28-87 8-63 (96)
193 1qm9_A Polypyrimidine tract-bi 99.4 1E-13 3.5E-18 84.0 4.7 55 28-87 3-58 (198)
194 3pgw_A U1-A; protein-RNA compl 99.4 9.4E-13 3.2E-17 83.5 8.3 57 26-87 205-261 (282)
195 2g4b_A Splicing factor U2AF 65 99.4 4.4E-13 1.5E-17 79.3 5.5 55 27-87 3-68 (172)
196 2yh0_A Splicing factor U2AF 65 99.4 5.4E-13 1.8E-17 80.5 5.3 55 27-87 3-68 (198)
197 1qm9_A Polypyrimidine tract-bi 99.3 4.4E-12 1.5E-16 76.7 7.6 56 27-87 119-175 (198)
198 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.4E-12 1.8E-16 69.9 6.4 45 38-87 27-71 (100)
199 2adc_A Polypyrimidine tract-bi 99.3 8.1E-12 2.8E-16 77.5 7.5 55 28-87 151-206 (229)
200 2dit_A HIV TAT specific factor 99.3 2.1E-11 7.2E-16 68.4 8.2 60 24-87 11-81 (112)
201 1jmt_A Splicing factor U2AF 35 99.3 1E-12 3.5E-17 73.2 2.2 54 33-87 20-85 (104)
202 3v4m_A Splicing factor U2AF 65 99.2 3.1E-11 1E-15 67.3 5.5 61 27-87 4-76 (105)
203 3ue2_A Poly(U)-binding-splicin 99.2 7E-11 2.4E-15 67.2 6.5 61 27-87 19-88 (118)
204 1owx_A Lupus LA protein, SS-B, 99.1 1.8E-10 6E-15 65.8 5.9 56 26-87 16-73 (121)
205 3s6e_A RNA-binding protein 39; 98.8 4.6E-09 1.6E-13 59.3 4.1 41 43-87 32-72 (114)
206 3dxb_A Thioredoxin N-terminall 98.6 1.5E-07 5E-12 58.0 6.1 47 41-87 142-192 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.4 1.9E-06 6.6E-11 46.7 6.4 54 26-87 5-66 (91)
208 1ufw_A Synaptojanin 2; RNP dom 98.0 8.2E-06 2.8E-10 44.5 4.5 55 25-87 12-75 (95)
209 1whv_A Poly(A)-specific ribonu 98.0 5.3E-05 1.8E-09 41.5 7.4 51 28-87 16-66 (100)
210 2l9w_A U4/U6 snRNA-associated- 97.7 0.00028 9.5E-09 39.5 6.6 55 26-86 19-78 (117)
211 3ctr_A Poly(A)-specific ribonu 97.6 9E-05 3.1E-09 40.6 4.4 50 29-87 7-56 (101)
212 2dhx_A Poly (ADP-ribose) polym 96.9 0.018 6.1E-07 31.7 8.1 54 26-87 6-64 (104)
213 1uw4_A UPF3X; nonsense mediate 96.9 0.0069 2.4E-07 32.6 6.4 56 29-84 2-59 (91)
214 3pq1_A Poly(A) RNA polymerase; 96.8 0.00086 2.9E-08 45.8 3.0 53 29-87 54-106 (464)
215 2kn4_A Immunoglobulin G-bindin 96.7 0.0021 7.2E-08 37.1 4.1 29 57-87 2-30 (158)
216 1wwh_A Nucleoporin 35, nucleop 95.6 0.059 2E-06 30.3 6.1 56 25-87 21-76 (119)
217 2l08_A Regulator of nonsense t 95.3 0.024 8.2E-07 30.9 3.6 57 28-84 9-67 (97)
218 3d45_A Poly(A)-specific ribonu 94.8 0.13 4.5E-06 35.4 7.1 51 28-87 440-490 (507)
219 1wey_A Calcipressin 1; structu 93.5 0.18 6.1E-06 27.7 4.5 53 28-86 5-62 (104)
220 2i2y_A Fusion protein consists 86.0 0.68 2.3E-05 26.1 2.9 22 66-87 9-30 (150)
221 3p3d_A Nucleoporin 53; structu 69.1 3.4 0.00012 23.6 2.2 58 29-87 8-79 (132)
222 3fut_A Dimethyladenosine trans 33.5 56 0.0019 20.4 3.7 32 29-61 111-142 (271)
223 3ts2_A Protein LIN-28 homolog 32.8 11 0.00038 21.6 0.3 10 69-78 20-29 (148)
224 4e8u_A Putative uncharacterize 32.7 79 0.0027 18.7 4.6 36 41-79 34-71 (172)
225 3h7h_B Transcription elongatio 32.6 34 0.0012 18.5 2.3 19 69-87 50-68 (106)
226 2cs4_A Protein C12ORF2; GTP bi 32.1 28 0.00097 18.6 1.8 22 33-54 21-43 (95)
227 3mfb_A Uncharacterized protein 30.1 85 0.0029 18.3 5.1 37 40-76 3-42 (157)
228 3uzu_A Ribosomal RNA small sub 28.8 17 0.0006 22.8 0.8 33 29-61 115-147 (279)
229 1ytr_A Bacteriocin plantaricin 26.4 38 0.0013 13.1 1.5 12 42-53 14-25 (26)
230 2k5n_A Putative cold-shock pro 25.6 65 0.0022 16.1 2.5 10 69-78 13-22 (74)
231 2i9x_A Putative septation prot 24.7 83 0.0029 16.4 4.3 26 54-79 5-30 (87)
232 3tqs_A Ribosomal RNA small sub 24.2 17 0.00058 22.5 0.1 31 31-61 99-129 (255)
233 2ki0_A DS119; beta-alpha-beta, 23.6 43 0.0015 14.0 1.3 18 27-49 4-21 (36)
234 1i4w_A Mitochondrial replicati 23.1 73 0.0025 20.9 2.9 22 30-51 144-165 (353)
235 2ia9_A Putative septation prot 22.2 1E+02 0.0035 16.5 4.3 26 54-79 5-30 (100)
236 3lpe_A Putative transcription 22.0 62 0.0021 16.7 2.1 19 69-87 49-67 (92)
237 1qyr_A KSGA, high level kasuga 21.9 92 0.0031 19.1 3.1 27 30-56 92-118 (252)
238 1eij_A Hypothetical protein MT 21.8 66 0.0022 16.6 2.1 20 33-52 49-68 (80)
239 2i9z_A Putative septation prot 21.8 1.1E+02 0.0037 16.6 4.4 25 55-79 6-30 (105)
240 3ftd_A Dimethyladenosine trans 21.7 79 0.0027 19.3 2.8 27 29-55 96-122 (249)
241 1h95_A CSD, Y-box binding prot 21.5 85 0.0029 15.7 2.5 10 69-78 19-28 (79)
242 2jsh_A Appetite-regulating hor 21.0 47 0.0016 13.3 1.1 21 35-55 2-22 (26)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=103.68 Aligned_cols=62 Identities=27% Similarity=0.437 Sum_probs=58.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..+|||+|||+++++++|+++|++||.|..++++.++.+|+++|||||+|.++++|+.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai 78 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999999989999999999999999999987
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=8.3e-20 Score=103.07 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=58.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai 65 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETV 65 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHH
Confidence 4578999999999999999999999999999999999989999999999999999999997
No 3
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=2e-19 Score=97.12 Aligned_cols=64 Identities=25% Similarity=0.376 Sum_probs=59.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH
Confidence 3455689999999999999999999999999999999999889999999999999999999987
No 4
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.5e-19 Score=97.52 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=60.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......+|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 74 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHH
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHH
Confidence 33455688999999999999999999999999999999999889999999999999999999987
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-20 Score=101.84 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=56.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+|||+|||+++++++|+++|+.|| .|..+++++++.+|+++|||||+|.+.++|+.||
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai 61 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWM 61 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 5799999999999999999999999 7999999999989999999999999999999986
No 6
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.2e-19 Score=100.06 Aligned_cols=67 Identities=37% Similarity=0.699 Sum_probs=61.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 21 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 21 ~~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.........+|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3444556789999999999999999999999999999999999889999999999999999999987
No 7
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=99.67 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=57.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|||+|||+++++++|+++|+.||.|..+.++.++. |+++|||||+|.++++|+.||
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai 69 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFV 69 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHH
Confidence 3458899999999999999999999999999999999986 999999999999999999987
No 8
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=9.1e-19 Score=96.63 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=61.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN--------INVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+.....+|||+|||+++++++|+++|+.||.|.. +.++.++.+|+++|||||+|.+.++|+.||
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai 80 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAI 80 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHH
Confidence 344556789999999999999999999999999999 999999889999999999999999999987
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.4e-19 Score=97.32 Aligned_cols=66 Identities=27% Similarity=0.411 Sum_probs=61.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 74 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHH
Confidence 334556789999999999999999999999999999999999889999999999999999999987
No 10
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=98.10 Aligned_cols=66 Identities=27% Similarity=0.429 Sum_probs=61.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHH
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHH
Confidence 334556789999999999999999999999999999999999889999999999999999999987
No 11
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=95.01 Aligned_cols=62 Identities=16% Similarity=0.315 Sum_probs=58.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+..++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 64 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 45689999999999999999999999999999999999889999999999999999999987
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=99.48 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=56.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCC--eeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGR--VYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
-.+|||+|||+++++++|+++|++||. +..+++++|+.+|+++|||||+|.+.++|+.||
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHH
Confidence 357999999999999999999999995 578999999999999999999999999999987
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=94.97 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+..++|||+|||+.+++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHH
Confidence 34455689999999999999999999999999999999999888999999999999999999987
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=94.22 Aligned_cols=62 Identities=26% Similarity=0.454 Sum_probs=57.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 65 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 65 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999999889999999999999999999986
No 15
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.9e-18 Score=97.57 Aligned_cols=66 Identities=24% Similarity=0.466 Sum_probs=60.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 74 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 74 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 334456789999999999999999999999999999999999889999999999999999999987
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=95.98 Aligned_cols=63 Identities=21% Similarity=0.388 Sum_probs=59.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999999889999999999999999999987
No 17
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=2.5e-18 Score=95.60 Aligned_cols=63 Identities=25% Similarity=0.391 Sum_probs=58.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+.+++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|+.||
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai 73 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAI 73 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHH
Confidence 34557899999999999999999999999999999999998 8999999999999999999987
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=97.07 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=60.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......+|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 74 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 74 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHH
Confidence 33455689999999999999999999999999999999999889999999999999999999987
No 19
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=95.98 Aligned_cols=63 Identities=16% Similarity=0.326 Sum_probs=59.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVY-NINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|+.||.|. .+.++.++.+++++|||||+|.+.++|+.||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 69 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHH
Confidence 34568999999999999999999999999999 9999999889999999999999999999987
No 20
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=95.05 Aligned_cols=65 Identities=28% Similarity=0.501 Sum_probs=60.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+..++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 75 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 75 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHH
Confidence 34456689999999999999999999999999999999999888999999999999999999987
No 21
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=97.31 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=59.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 74 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 74 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999999889999999999999999999987
No 22
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=97.82 Aligned_cols=65 Identities=29% Similarity=0.507 Sum_probs=60.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai 76 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 76 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 34456689999999999999999999999999999999999889999999999999999999987
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=97.44 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=59.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAE 72 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHH
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHH
Confidence 3445689999999999999999999999999999999999888999999999999999999987
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.7e-18 Score=92.48 Aligned_cols=59 Identities=25% Similarity=0.433 Sum_probs=56.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 60 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 60 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHH
Confidence 58999999999999999999999999999999999889999999999999999999986
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=9.7e-19 Score=93.86 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=59.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 66 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999999889999999999999999999987
No 26
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=94.71 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=58.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+..++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 64 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHH
Confidence 45689999999999999999999999999999999999888999999999999999999987
No 27
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=5.7e-19 Score=99.30 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=57.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 84 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHH
Confidence 4456689999999999999999999999999999999999889999999999999999999987
No 28
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=3.6e-19 Score=96.86 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=54.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYG--RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+|||+|||+++++++|+++|+.|| .|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai 62 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 62 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHH
Confidence 4799999999999999999999999 9999999999989999999999999999999987
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=96.13 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=59.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 82 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 82 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHH
Confidence 345678999999999999999999999999999999999989999999999999999999987
No 30
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=96.72 Aligned_cols=65 Identities=22% Similarity=0.431 Sum_probs=60.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++...+|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 34456689999999999999999999999999999999999889999999999999999999987
No 31
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=3.9e-18 Score=94.65 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=59.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+.....+|||+|||+++++++|+++|..|| |..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 33445668999999999999999999999997 999999999989999999999999999999987
No 32
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.8e-18 Score=94.21 Aligned_cols=63 Identities=17% Similarity=0.387 Sum_probs=58.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+++++++|+++|..||.|..+.++.++ +++++|||||+|.+.++|+.||
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHH
Confidence 34456889999999999999999999999999999999998 9999999999999999999987
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=95.35 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=59.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 67 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999999889999999999999999999987
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=1.5e-18 Score=98.38 Aligned_cols=59 Identities=25% Similarity=0.387 Sum_probs=54.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+++++++|+++|+.||.|..++++.++ +.++|||||+|.+.++|+.||
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai 62 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 62 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHH
Confidence 35689999999999999999999999999999999986 458999999999999999997
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2.6e-18 Score=97.08 Aligned_cols=64 Identities=27% Similarity=0.389 Sum_probs=59.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+..++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 84 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHH
Confidence 3345689999999999999999999999999999999999889999999999999999999987
No 36
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=102.86 Aligned_cols=61 Identities=16% Similarity=0.312 Sum_probs=57.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYG--RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+++++++|+++|+.|| .|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 347899999999999999999999999 9999999999989999999999999999999997
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=95.87 Aligned_cols=65 Identities=18% Similarity=0.368 Sum_probs=59.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec-CCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD-KVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......+|||+|||+.+++++|+++|..||.|..+.++.+ +.+++++|||||+|.+.++|+.||
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~ 75 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 75 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHH
Confidence 34456689999999999999999999999999999999988 778999999999999999999987
No 38
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=3.2e-19 Score=98.90 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=57.8
Q ss_pred CceEEEcCCCC------CCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPR------SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+|||+|||+ ++++++|+++|++||.|..+.++.++.+|+++|||||.|.+.++|+.||
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai 71 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKII 71 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 57899999999 9999999999999999999999999989999999999999999999997
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=95.48 Aligned_cols=64 Identities=27% Similarity=0.432 Sum_probs=59.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 71 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHH
Confidence 3456689999999999999999999999999999999999889999999999999999999987
No 40
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=95.65 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=57.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN-INVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|..||.|.. +.++.+ .+|+++|||||+|.++++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999987 888888 58999999999999999999997
No 41
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.9e-18 Score=94.27 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=57.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSE-YGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|.. ||.|..+.++.++ +|+++|||||+|.+.++|+.||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHH
Confidence 45688999999999999999999999 9999999999998 9999999999999999999986
No 42
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=9e-19 Score=92.15 Aligned_cols=58 Identities=22% Similarity=0.429 Sum_probs=55.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.++++|++|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 58 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 58 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 5899999999999999999999999999999999889999999999999999999986
No 43
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=3.7e-18 Score=92.26 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=57.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 478999999999999999999999999999999999889999999999999999999986
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=96.07 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=59.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 71 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3445689999999999999999999999999999999999889999999999999999999987
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.2e-18 Score=97.02 Aligned_cols=63 Identities=27% Similarity=0.403 Sum_probs=59.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHH
Confidence 445688999999999999999999999999999999999889999999999999999999986
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.5e-18 Score=93.44 Aligned_cols=62 Identities=21% Similarity=0.429 Sum_probs=57.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+.+++++|+++|..||.|..+.++.+ +++++|||||+|.+.++|+.||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHH
Confidence 3446789999999999999999999999999999999988 7999999999999999999986
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=93.20 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=58.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+.+++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHH
Confidence 34456899999999999999999999999999999999998 4999999999999999999986
No 48
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=2.8e-18 Score=96.16 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=59.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai 85 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 85 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3455688999999999999999999999999999999999889999999999999999999987
No 49
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=94.74 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=58.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC-CCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVT-GQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~~~g~~fv~f~~~~~a~~ai 87 (88)
+.....+|||+|||+++++++|+++|..|| |..+.++.++.+ ++++|||||+|.+.++|+.||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH
Confidence 445568999999999999999999999999 999999999877 999999999999999999987
No 50
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=94.80 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=56.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+....+|||+|||+++++++|+++|+.||.+ .+.++.++ +++++|||||+|.++++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999954 99999998 8999999999999999999997
No 51
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=96.24 Aligned_cols=66 Identities=26% Similarity=0.348 Sum_probs=60.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVY--------NINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......++|||+|||+++++++|+++|..||.|. .+.++.++.+++++|||||+|.+.++|+.||
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 82 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAV 82 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHH
Confidence 33445678999999999999999999999999998 6999999889999999999999999999987
No 52
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=3.1e-18 Score=94.00 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=57.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 61 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 61 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 478999999999999999999999999999999999889999999999999999999987
No 53
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=94.34 Aligned_cols=63 Identities=27% Similarity=0.545 Sum_probs=58.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+++++++|+++|..||.|..+.++.++ +++++|||||+|.+.++|+.||
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 83 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVI 83 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHH
Confidence 34456899999999999999999999999999999999998 9999999999999999999986
No 54
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=94.90 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=58.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNI-NVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|+.||.|..+ .++.++.+++++|||||+|.+.++|+.||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 65 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 65 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHH
Confidence 346899999999999999999999999999999 99999889999999999999999999987
No 55
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=94.02 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=58.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......++|||+|||+++++++|+++|..||.|..+.++.++ +++++|||||+|.+.++|+.||
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 73 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAI 73 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHH
Confidence 344556899999999999999999999999999999999988 6999999999999999999986
No 56
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.6e-19 Score=92.72 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.++++|+.||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 59 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 59 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHH
Confidence 36999999999999999999999999999999999888999999999999999999986
No 57
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=100.98 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=57.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeE--EEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN--INVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+++++++|+++|..||.|.. ++++.++.+|+++|||||+|.+. +|+.||
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai 83 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLL 83 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHH
Confidence 3445689999999999999999999999999966 99999999999999999999999 998886
No 58
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=5.4e-18 Score=98.45 Aligned_cols=63 Identities=24% Similarity=0.422 Sum_probs=59.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 101 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAI 101 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999999889999999999999999999987
No 59
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=94.06 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCC---CCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKV---TGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+..++|||+|||+++++++|+++|+.||.|..+.++.++. +++++|||||+|.+.++|+.||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~ 67 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 67 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHH
Confidence 4568899999999999999999999999999999998875 5689999999999999999987
No 60
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=4.3e-18 Score=104.99 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=58.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|+.||
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai 74 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 74 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHH
Confidence 344579999999999999999999999999999999999989999999999999999999987
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=5.2e-18 Score=98.01 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=59.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai 105 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 105 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 345688999999999999999999999999999999999889999999999999999999987
No 62
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=97.09 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=58.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRV-YNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+....+|||+|||+++++++|+++|..||.| ..+.++.++ +|+++|||||+|.+.++|+.||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al 74 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSE 74 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHG
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHH
Confidence 34456899999999999999999999999999 889999998 9999999999999999999997
No 63
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=98.05 Aligned_cols=60 Identities=20% Similarity=0.421 Sum_probs=57.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai 86 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 86 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHH
Confidence 478999999999999999999999999999999999889999999999999999999997
No 64
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=9.8e-18 Score=99.12 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=59.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+.+++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|+.||
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai 98 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999999989999999999999999999987
No 65
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=7.7e-19 Score=92.34 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=55.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai 58 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 58 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHH
Confidence 5899999999999999999999999999999999888999999999999999999987
No 66
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=1.1e-17 Score=93.28 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=59.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+.+++++|+++|..||.|..+.++.++ +|+++|||||+|.+.++|+.||
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~ 87 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAM 87 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHH
Confidence 34556899999999999999999999999999999999998 9999999999999999999986
No 67
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=2e-18 Score=95.61 Aligned_cols=60 Identities=30% Similarity=0.449 Sum_probs=57.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|||+|||+++++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|+.||
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai 67 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIV 67 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHH
Confidence 45789999999999999999999999999999999998 9999999999999999999987
No 68
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=8.7e-18 Score=97.38 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=59.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+.+++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 122 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 122 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 3445689999999999999999999999999999999999889999999999999999999987
No 69
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=93.49 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=58.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+...+|||+|||+++++++|+++|..||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 74 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 74 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHH
Confidence 345678999999999999999999999999988888888889999999999999999999987
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=95.81 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=57.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|+.||.|..+.++.+. +|+++|||||+|.+.++|+.||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai 65 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAA 65 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHH
Confidence 345799999999999999999999999999999999998 9999999999999999999987
No 71
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=96.99 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=57.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 468999999999999999999999999999999999988999999999999999999987
No 72
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=95.37 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++...+|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.||
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMV 69 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHH
Confidence 3455689999999999999999999999999999998764 699999999999999987
No 73
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=7.8e-18 Score=95.82 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=57.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGR---VYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|+.||. |..++++.++. |+++|||||+|.++++|+.||
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al 78 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLAL 78 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHG
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHH
Confidence 345678999999999999999999999999 89999999985 999999999999999999997
No 74
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=96.86 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=55.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC---CCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVT---GQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.++++|+.||
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai 69 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALI 69 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHH
Confidence 4568899999999999999999999999999 888877766 799999999999999999987
No 75
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=7.8e-18 Score=96.35 Aligned_cols=64 Identities=25% Similarity=0.331 Sum_probs=59.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 3445679999999999999999999999999999999999889999999999999999999987
No 76
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=8.7e-18 Score=98.01 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=57.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGR---VYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|+.||
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al 105 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMAL 105 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH
Confidence 345678999999999999999999999999 88999999985 999999999999999999997
No 77
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=1.3e-17 Score=100.74 Aligned_cols=63 Identities=21% Similarity=0.379 Sum_probs=59.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 72 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHH
Confidence 345689999999999999999999999999999999999889999999999999999999987
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.6e-18 Score=93.20 Aligned_cols=61 Identities=30% Similarity=0.494 Sum_probs=58.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 67 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 67 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 3578999999999999999999999999999999999889999999999999999999987
No 79
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.5e-18 Score=93.99 Aligned_cols=62 Identities=11% Similarity=0.231 Sum_probs=57.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEe-ecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGR-VYNINVL-RDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|..||. |..+.++ .++.+|+++|||||+|.+.++|+.||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHH
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHH
Confidence 45689999999999999999999999998 9999998 77878899999999999999999987
No 80
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=90.90 Aligned_cols=61 Identities=20% Similarity=0.407 Sum_probs=56.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCC-ceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ-SKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~-~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+++++++|+++|+.||.|..+.++.+..++. ++|||||+|.+.++|+.||
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 64 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHH
Confidence 457899999999999999999999999999999999886666 9999999999999999986
No 81
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=95.08 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=55.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+..+|||+|||+++++++|+++|+.| .|..+.|+.++ .|+++|||||+|.++++|++||
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al 73 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL 73 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH
Confidence 45789999999999999999999999 89999999998 4999999999999999999987
No 82
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-17 Score=90.32 Aligned_cols=64 Identities=17% Similarity=0.368 Sum_probs=57.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......++|||+|||+++++++|+++|..||.|..+.++.++. .++|||||+|.+.++|+.||
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAR 72 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHH
Confidence 34445678999999999999999999999999999999998863 38999999999999999987
No 83
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=90.08 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=52.6
Q ss_pred ceEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSM------DEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|+.||
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai 64 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAV 64 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHH
Confidence 689999999999 679999999999999999887 347999999999999999999987
No 84
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=4.9e-18 Score=92.83 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=57.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+...+|||+|||+++++++|+++|..||.|..+.++.++.+++++|||||+|.++++|+.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 74 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 74 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHH
Confidence 34589999999999999999999999999998888888889999999999999999999987
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=3.1e-17 Score=93.71 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=58.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+.+++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|+.||
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai 93 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAM 93 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHH
Confidence 3456789999999999999999999999999999999998 9999999999999999999986
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=3.8e-17 Score=88.77 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=56.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|+.||.|..+.+..+ +++++|||||+|.+.++|+.||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~ 65 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERAC 65 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999874 7899999999999999999986
No 87
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=96.37 Aligned_cols=63 Identities=8% Similarity=0.087 Sum_probs=56.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|..||.|..+.++.+..+|+++|||||+|.+.++|+.||
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al 84 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 84 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHH
Confidence 345679999999999999999999999999988666666669999999999999999999997
No 88
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=4.4e-18 Score=94.17 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=55.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecC-CCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK-VTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|+.|| |..+.++.++ .+|+++|||||+|.+.++|+.||
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999 9999999887 68999999999999999999987
No 89
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=1.3e-17 Score=96.24 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=55.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCee--EEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVY--NINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|+.| .|. .+.++.++. |+++|||||+|.++++|++||
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHH
Confidence 3456789999999999999999999999 676 899999985 999999999999999999997
No 90
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.6e-17 Score=88.41 Aligned_cols=61 Identities=10% Similarity=0.203 Sum_probs=56.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|+.| .|..+.++.+ .+|+++|||||+|.+.++|+.||
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~ 67 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQAL 67 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHH
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999 9999999999 58999999999999999999987
No 91
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.5e-17 Score=94.94 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=57.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 478999999999999999999999999999999999889999999999999999999987
No 92
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=90.79 Aligned_cols=59 Identities=19% Similarity=0.372 Sum_probs=51.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
.....+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.++++|+++.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~ 66 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG 66 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC
Confidence 345679999999999999999999999999999998763 78999999999999987654
No 93
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=1.5e-17 Score=104.08 Aligned_cols=61 Identities=21% Similarity=0.392 Sum_probs=57.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYG--RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+||++++++++|+++|..|| .|..+.|+.++.+++++|||||+|.+.++|+.||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 456799999999999999999999999 9999999999989999999999999999999997
No 94
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=94.40 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGR---VYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|..||. |..+.++.++. |+++|||||+|.+.++|+.||
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al 72 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKAL 72 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHH
Confidence 345678999999999999999999999998 89999999985 999999999999999999997
No 95
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=96.19 Aligned_cols=61 Identities=8% Similarity=0.175 Sum_probs=56.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRV----YNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|+.||.| ..+.|+.+. +|+++|||||+|.++++|+.||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al 85 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNAL 85 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHH
Confidence 446789999999999999999999999875 689999885 8999999999999999999997
No 96
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=3.3e-17 Score=96.85 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=58.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 129 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 129 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 44689999999999999999999999999999999999889999999999999999999987
No 97
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=4e-17 Score=97.41 Aligned_cols=62 Identities=26% Similarity=0.349 Sum_probs=58.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+.+++++|+.+|..||.|..+.++.++.+|+++|||||.|.+.++|+.||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 131 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 131 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHH
Confidence 44578999999999999999999999999999999999889999999999999999999987
No 98
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5e-17 Score=90.08 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=55.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+.+++++|+++|+.||.|..+.++.++. .++|||||+|.+.++|+.||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHH
Confidence 345568999999999999999999999999999999998863 36899999999999999987
No 99
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.4e-17 Score=90.70 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=51.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.||
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai 68 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMV 68 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999987653 799999999999999986
No 100
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=93.81 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=52.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++||
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai 84 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMV 84 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHH
Confidence 345688999999999999999999999999999998764 699999999999999987
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=92.17 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=54.0
Q ss_pred CCceEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSM------DEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+.+ ++++|+.+|+.||.|..+.++ +.+|+++|||||+|.+.++|+.||
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai 78 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAV 78 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHH
Confidence 45789999999999 679999999999999999988 357999999999999999999987
No 102
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=5.2e-18 Score=91.99 Aligned_cols=58 Identities=22% Similarity=0.508 Sum_probs=55.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.+ |+.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~ 59 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAI 59 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHH
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHH
Confidence 57999999999999999999999999999999999888999999999999999 88876
No 103
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.8e-17 Score=97.96 Aligned_cols=61 Identities=26% Similarity=0.493 Sum_probs=58.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|+.||
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 62 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 62 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHH
Confidence 3578999999999999999999999999999999999889999999999999999999986
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=90.05 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=51.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+..++|||+|||+++++++|+++|++||.|..+.+++ .+|||||+|.+.++|++||
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av 74 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAV 74 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHH
Confidence 3468899999999999999999999999999998864 4699999999999999987
No 105
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=92.12 Aligned_cols=64 Identities=17% Similarity=0.370 Sum_probs=57.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......++|||+|||.++++++|+++|+.||.|..+.++.++ +.++|||||+|.+.++|+.||
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHH
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHH
Confidence 3344567899999999999999999999999999999999886 458999999999999999986
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=91.10 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=52.1
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+ ++++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.||
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai 69 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAV 69 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHH
Confidence 334568999999999 9999999999999999999998754 489999999999999987
No 107
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=6e-17 Score=96.10 Aligned_cols=61 Identities=48% Similarity=0.726 Sum_probs=57.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCC--CceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG--QSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g--~~~g~~fv~f~~~~~a~~ai 87 (88)
+.++|||+|||+++++++|+++|+.||.|..+.++.++.++ +++|||||+|.+.++|+.||
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 64 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHH
Confidence 45799999999999999999999999999999999998776 89999999999999999986
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.5e-17 Score=96.69 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=58.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai 106 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 106 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999999889999999999999999999987
No 109
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=91.21 Aligned_cols=64 Identities=9% Similarity=0.188 Sum_probs=56.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEEeecCCCC---CceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLT---KMFSEYGRVYNINVLRDKVTG---QSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~g---~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+++++++|+ ++|.+||.|..+.++.+..++ +++|||||+|.++++|+.||
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai 80 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAI 80 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHH
Confidence 33456789999999999999999 999999999999998887543 56699999999999999987
No 110
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-16 Score=88.50 Aligned_cols=61 Identities=13% Similarity=0.311 Sum_probs=54.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+++++++|+++|..||.|..+.+..+ ++++|||||+|.+.++|+.||
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHH
Confidence 3445689999999999999999999999999999988543 568999999999999999987
No 111
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=1.1e-17 Score=97.84 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|+.|| +..+.|+.++. |+++|||||+|.++++|+.||
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH
Confidence 34567899999999999999999999999 67999999984 999999999999999999997
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=88.83 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+..++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.||
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai 68 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECV 68 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHH
Confidence 45689999999999999999999999999999987643 699999999999999986
No 113
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=88.66 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=52.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchhC
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTIG 88 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai~ 88 (88)
...++|||+|||+++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|++++|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc
Confidence 34589999999999999999999999999999988754 78999999999999998875
No 114
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.7e-16 Score=93.46 Aligned_cols=60 Identities=25% Similarity=0.459 Sum_probs=57.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.++++|+.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 61 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHH
Confidence 478999999999999999999999999999999999889999999999999999999986
No 115
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8e-17 Score=88.48 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=54.3
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLT----KMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+ ++|++||.|..+.++.++.+ +|||||+|.+.++|+.||
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai 69 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAV 69 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHH
Confidence 345789999999999999999 99999999999999988754 899999999999999987
No 116
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=87.68 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=53.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+...++|||+|||+++++++|+++|..||.| .++.+ .+++++|||||+|.+.++|+.||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~ 70 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEAL 70 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHH
Confidence 44567899999999999999999999999977 55666 48999999999999999999987
No 117
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.8e-16 Score=90.73 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=60.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
........+|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||.|.+.++|..||
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 344456689999999999999999999999999999999999889999999999999999999986
No 118
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.7e-17 Score=92.82 Aligned_cols=51 Identities=10% Similarity=0.235 Sum_probs=49.0
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 29 IKMFVGQI----PRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 29 ~~l~v~nL----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
.+|||+|| |+.+++.+|+.+|+.||+|..+.++.|+.||+++||+||+|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 57999999 9999999999999999999999999999999999999999996
No 119
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.2e-16 Score=86.82 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=50.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+.-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.++++|..||
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai 60 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQ 60 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHH
Confidence 356799999999999999999999999999998854 6899999999999999987
No 120
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-18 Score=96.89 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=58.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYN--------INVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+++|+.||.|.. +.++.++.+++++|||||+|.+.++|+.||
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 74 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAI 74 (116)
Confidence 445688999999999999999999999999988 889999888999999999999999999987
No 121
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=1.7e-16 Score=93.68 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=57.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.++++|+.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 62 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 62 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHH
Confidence 478999999999999999999999999999999999889999999999999999999986
No 122
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1e-17 Score=92.58 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=55.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|..||.|.. .++.+..+++++|||||+|.+.++|+.||
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~ 75 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL 75 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 35679999999999999999999999999877 56666668899999999999999999987
No 123
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-16 Score=85.66 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=55.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 22 ~~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.......++|||+|||+++++++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|+.||
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAK 71 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 34455678999999999999999999999774 6777888878999999999999999999987
No 124
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=90.30 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=51.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||++ +++++|+++|++||.|..+.+++ ++|||||+|.+.++|+.||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai 79 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMV 79 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHH
Confidence 344689999999998 99999999999999999998863 4799999999999999987
No 125
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6e-16 Score=86.58 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|..||.|..+.++.+ |||||+|.+.++|+.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai 67 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAV 67 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHH
Confidence 45689999999999999999999999999999998765 89999999999999987
No 126
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=6.3e-16 Score=93.29 Aligned_cols=61 Identities=25% Similarity=0.488 Sum_probs=58.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|..||
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 4578999999999999999999999999999999999889999999999999999999987
No 127
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=8.2e-16 Score=91.14 Aligned_cols=63 Identities=22% Similarity=0.518 Sum_probs=59.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||.|.+.++|+.|+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 345688999999999999999999999999999999999889999999999999999999986
No 128
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8e-16 Score=82.38 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=51.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+.+++++|+++|++||.|..+.++. ++|||||+|.+.++|+.||
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~ 65 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAA 65 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999875 3699999999999999986
No 129
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=4.4e-16 Score=87.74 Aligned_cols=60 Identities=12% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++..++|||+|||+.+++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|+.||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~ 64 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAV 64 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999865 456999999999999999986
No 130
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=90.08 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=52.0
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLT----KMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+...+|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|+.||
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai 89 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFV 89 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHH
Confidence 346789999999999998876 6999999999887643 6789999999999999999987
No 131
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=5.5e-16 Score=94.78 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=56.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||+|||+++++++|+++|+.||.|..++++.+. +++++|||||+|.+.++|+.||
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~ 167 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFV 167 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHH
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHH
Confidence 4789999999999999999999999999999999987 6999999999999999999987
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.9e-17 Score=91.62 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+.+++++|+++|..||.|..+.+..+..+++++|||||+|.+.++|+.||
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 84 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 84 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999843322222227899999999999999999987
No 133
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=3.6e-16 Score=94.51 Aligned_cols=61 Identities=20% Similarity=0.340 Sum_probs=57.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+.+++++|+++|..||.|..+.++.++ +++++|||||+|.+.++|+.||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai 146 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAM 146 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHH
Confidence 345789999999999999999999999999999999998 9999999999999999999987
No 134
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=83.98 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=51.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|+.||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~ 70 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAAC 70 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999987643 689999999999999986
No 135
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.8e-16 Score=83.02 Aligned_cols=55 Identities=22% Similarity=0.553 Sum_probs=50.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..++|||+|||+++++++|+++|+.||.|..+.++ +|||||+|.+.++|+.||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~ 59 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAI 59 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHH
Confidence 4556899999999999999999999999999999886 589999999999999987
No 136
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.7e-16 Score=84.97 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=51.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|+.||.|..+.+. +++|||||+|.+.++|+.||
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai 80 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCI 80 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHH
Confidence 3446799999999999999999999999999999886 46799999999999999987
No 137
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=6e-16 Score=94.60 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=55.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|+.||
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 87 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLAL 87 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHH
Confidence 468999999999999999999999999999999999889999999999999999999986
No 138
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.3e-16 Score=84.63 Aligned_cols=59 Identities=22% Similarity=0.457 Sum_probs=52.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 23 ~~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......++|||+|||+.+++++|+++|..||.|..+.+..+ +|||||+|.+.++|+.||
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~ 68 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAK 68 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHH
Confidence 33456689999999999999999999999999999988743 699999999999999987
No 139
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=2.6e-16 Score=88.95 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=52.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+....+|||+|||+++++++|+++|+.|| .|..+.+.. .+++|||||+|.+.++|+.||
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai 84 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEAL 84 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHH
Confidence 34457999999999999999999999999 899988743 358899999999999999997
No 140
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.6e-16 Score=91.49 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=54.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++|||+|||+++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|+.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~ 58 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIAL 58 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHH
Confidence 579999999999999999999999999999999887 6889999999999999999987
No 141
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=7e-16 Score=104.08 Aligned_cols=62 Identities=19% Similarity=0.353 Sum_probs=58.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+.+++++|+.+|..||.|..|.|+.++.+++++|||||+|.+.++|+.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 161 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAY 161 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHH
Confidence 34578999999999999999999999999999999999889999999999999999999997
No 142
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=2.9e-15 Score=88.37 Aligned_cols=63 Identities=25% Similarity=0.545 Sum_probs=59.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||..+++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|..|+
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 148 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 148 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 345678999999999999999999999999999999999889999999999999999999986
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=82.09 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=50.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|||+|||+++++++|+.+|..||.|..+ +.++.+++ ||||+|.+.++|+.||
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai 62 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVL 62 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHH
Confidence 445799999999999999999999999999987 55655666 9999999999999987
No 144
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=2e-15 Score=88.81 Aligned_cols=62 Identities=27% Similarity=0.479 Sum_probs=58.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 147 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 147 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Confidence 34578999999999999999999999999999999999889999999999999999999986
No 145
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.6e-15 Score=89.86 Aligned_cols=60 Identities=30% Similarity=0.524 Sum_probs=56.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+.+++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|+.||
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHH
Confidence 56789999999999999999999999999999999987 6999999999999999999987
No 146
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=2.2e-15 Score=92.07 Aligned_cols=61 Identities=20% Similarity=0.467 Sum_probs=58.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|..||
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 4478999999999999999999999999999999999889999999999999999999986
No 147
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=83.46 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=50.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+...+|||+|||+++++++|+++|..||.|. +.++. ++++|||||+|.+.++|+.||
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~ 73 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAV 73 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999996 55554 368899999999999999987
No 148
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=1.2e-15 Score=85.50 Aligned_cols=56 Identities=18% Similarity=0.422 Sum_probs=51.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+++++++|+++|+.||.|..+.+. +|||||+|.+.++|+.||
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHH
Confidence 34566899999999999999999999999999999886 699999999999999986
No 149
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=85.09 Aligned_cols=54 Identities=19% Similarity=0.384 Sum_probs=50.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+|||+|||+++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|+.||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~ 54 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAV 54 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHH
Confidence 37999999999999999999999999999998876 7899999999999999987
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=4.5e-16 Score=85.16 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+.+++++|+++|+.||.|..+ ..+++++|||||+|.+.++|+.||
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999987665 236899999999999999999987
No 151
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=5.5e-16 Score=91.52 Aligned_cols=60 Identities=27% Similarity=0.428 Sum_probs=57.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||.|.+.++|+.|+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 468999999999999999999999999999999999889999999999999999999986
No 152
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=2.3e-15 Score=82.83 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=50.6
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+..++|||+|||+ ++++++|+++|+.||.|..+.+ ++|||||+|.+.++|+.||
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai 74 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAI 74 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHH
Confidence 345678999999998 9999999999999999999987 2799999999999999987
No 153
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=85.04 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=52.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+.+++++|+++|..||.|..+.++.+ +|||||+|.+.++|+.||
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAI 78 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHH
Confidence 345679999999999999999999999999999998765 699999999999999987
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=1.5e-15 Score=89.17 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=53.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+.+++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|+.||
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHH
Confidence 3445689999999999999999999999999999998765 5899999999999999986
No 155
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=3.3e-16 Score=85.75 Aligned_cols=59 Identities=15% Similarity=0.303 Sum_probs=53.4
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLT----KMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+...+|||+|||+++++++|+ ++|+.||.|..+.+.. +|+++|||||+|.+.++|+.||
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~ 68 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNAL 68 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHH
Confidence 456899999999999999999 9999999999998763 5778999999999999999986
No 156
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=5.1e-15 Score=89.40 Aligned_cols=62 Identities=21% Similarity=0.505 Sum_probs=58.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+.+++++|+++|+.||.|..+.+..++.+|+++|||||+|.+.++|+.||
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 173 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 173 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHH
Confidence 45589999999999999999999999999999999999889999999999999999999886
No 157
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=3.6e-15 Score=83.49 Aligned_cols=54 Identities=22% Similarity=0.458 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|||+|||++ +++++|+++|..||.|..+.+ ++|||||+|.+.++|+.||
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~ 79 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAV 79 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHH
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHH
Confidence 34579999999999 999999999999999999987 5799999999999999987
No 158
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.7e-15 Score=82.28 Aligned_cols=55 Identities=24% Similarity=0.454 Sum_probs=49.5
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..++|||+|||+ .+++++|+++|+.||.|..+.+. +|||||+|.+.++|+.||
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHH
Confidence 34568999999998 99999999999999999999873 689999999999999987
No 159
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=86.77 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=49.7
Q ss_pred CCCceEEE--cCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFV--GQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v--~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+.+||| |||++.+++++|+++|++||.|..+.++. .+|||||+|.+.++|++||
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHH
Confidence 34678999 77999999999999999999999987642 3799999999999999987
No 160
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=3.6e-15 Score=82.62 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=49.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|||+|||+++++++|+++|..||.|..+.++ +|||||+|.+.++|+.||
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~ 62 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAM 62 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHH
Confidence 445889999999999999999999999999999875 469999999999999987
No 161
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.2e-15 Score=86.29 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=49.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+++++++|+++|..||.|..+.++.+ |||||+|.+.++|+.||
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai 68 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAV 68 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHH
Confidence 4578999999999999999999999999999998655 99999999999999987
No 162
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-14 Score=79.81 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=49.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEY--GRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+|||+.+++++|+++|..| |.|..+.+ ++|||||+|.+.++|+.||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--------~~g~afV~f~~~~~A~~A~ 68 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--------IRDYAFVHFSNREDAVEAM 68 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--------CSSEEEEEESSHHHHHHHH
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--------eCCeEEEEeCCHHHHHHHH
Confidence 34456899999999999999999999999 88988865 3689999999999999987
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=3.7e-16 Score=91.13 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=52.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEE------EEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNI------NVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~------~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|||+++++++|+.+|+.||.|..+ .+.. ..+|+++|||||.|.+.++|+.||
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai 109 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKAL 109 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHH
Confidence 3456899999999999999999999999998763 1111 236899999999999999999987
No 164
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=8.2e-15 Score=79.63 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=50.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+.+++++|+++|+.||.|..+.++ ++||||+|.+.++|+.||
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHH
Confidence 4456899999999999999999999999999999886 349999999999999987
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=4.1e-15 Score=79.82 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=50.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEY----G-------RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|||+|||+++++++|+++|+.| | .+..+.+..+ +|||||+|.+.++|+.||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH
Confidence 346899999999999999999999999 8 8988887643 799999999999999987
No 166
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=84.30 Aligned_cols=54 Identities=9% Similarity=0.104 Sum_probs=49.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+|||+|||+.+++++|+++|++||.|..+.++. ++|||||+|.+.++|+.||
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai 63 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAF 63 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHH
Confidence 56899999999999999999999999999988753 6789999999999999987
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=9.5e-15 Score=87.40 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=51.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+||++.+++++|+++|++||.|..+.+.... ++|||||+|.+.++|+.||
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai 101 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAK 101 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHH
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHH
Confidence 345679999999999999999999999999999886432 5799999999999999986
No 168
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-15 Score=79.62 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=50.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+.+++++|+++|+.||.|..+.++ ++||||+|.+.++|+.||
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~ 60 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAI 60 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHH
Confidence 4556899999999999999999999999999999886 349999999999999986
No 169
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=9e-15 Score=90.05 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=54.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+.+++++|+++|+.||.|..++++.+. +.++|||||+|.+.++|+.||
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHH
Confidence 45689999999999999999999999999999999886 458999999999999999987
No 170
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.9e-15 Score=81.50 Aligned_cols=56 Identities=14% Similarity=0.318 Sum_probs=48.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGR-VYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+...++|||+|||+++++++|+++|+.||. +..+.+ .++|||||+|.+.++|+.||
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~ 61 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAI 61 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHH
Confidence 345679999999999999999999999999 555554 25799999999999999986
No 171
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=5.2e-15 Score=79.92 Aligned_cols=54 Identities=11% Similarity=0.211 Sum_probs=49.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.++++|+.||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai 57 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAI 57 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHH
Confidence 45789999999999999999999999 99998873 57899999999999999986
No 172
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.2e-15 Score=79.86 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=50.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNI-NVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+++++++|+++|..||.|..+ .++.++.++. |||+|.+.++|+.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai 71 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQAL 71 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999 4777764433 999999999999987
No 173
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=2.3e-14 Score=90.59 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=56.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||+.+++++|+++|+.||.|..+.++.+. +|+++|||||+|.+.++|..||
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHH
Confidence 35789999999999999999999999999999999995 8999999999999999999987
No 174
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.55 E-value=3.3e-14 Score=90.31 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=58.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+...+|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|..|+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 154 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAK 154 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999999889999999999999999999987
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=2.3e-14 Score=90.96 Aligned_cols=59 Identities=15% Similarity=0.310 Sum_probs=53.9
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLT----KMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|||+|||+++++++|+ ++|+.||.|..|.+.. +++++|||||+|.+.++|+.||
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~ 69 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNAL 69 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHH
Confidence 456899999999999999976 8999999999998875 6789999999999999999987
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=2.8e-14 Score=82.56 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeE-EEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGL-KNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~-~fv~f~~~~~a~~ai 87 (88)
....+|||+||++.+++++|+++|++||.|..+.+.... +|| |||+|.+.++|+.||
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai 83 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAK 83 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHH
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHH
Confidence 344678999999999999999999999999999887542 588 999999999999987
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=1.5e-14 Score=89.95 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCceEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 17 SMSLPEQPDPDFIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 17 ~~~~~~~~~~~~~~l~v~nL~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..+..+.+...+|||+|||+ ++++++|+++|+.||.|..+.++.++ +|||||+|.+.++|+.||
T Consensus 23 ~~~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 23 RIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHH
T ss_pred CcCCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHH
Confidence 3444444556678999999999 99999999999999999999998765 789999999999999987
No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.3e-14 Score=77.12 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=49.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....+|||+|| ++++++|+++|..||.|..+.+. +++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai 66 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAV 66 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHH
Confidence 345689999995 89999999999999999999873 57899999999999999987
No 179
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.7e-14 Score=88.86 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=51.4
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIP-RSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+..+|||+||| +.+++++|+++|+.||.|..++++.+ .+|||||+|.+.++|+.||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai 59 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAI 59 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHH
Confidence 45789999999 89999999999999999999998764 3799999999999999997
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=7.1e-14 Score=80.28 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=48.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeE-EEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGL-KNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~-~fv~f~~~~~a~~ai 87 (88)
...|||+||++.+++++|+++|++||.|..+.+.. + .|| |||+|.+.++|+.||
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~ 79 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAK 79 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHH
Confidence 35679999999999999999999999999998854 2 286 999999999999986
No 181
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=1.2e-14 Score=89.41 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=53.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCCe--eEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYGRV--YNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g~v--~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|||+|||+++++++|+++|++||.| ..+++..+. +..+|||||+|.+.++|..||
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHH
Confidence 35689999999999999999999999999 888887765 556799999999999999997
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=2.9e-15 Score=89.18 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=53.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+++++++|+++|..||.+.. .++.+..+++++|||||+|.++++|+.||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 71 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL 71 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH
Confidence 3455689999999999999999999999987755 23344447889999999999999999987
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=9.9e-14 Score=82.45 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=52.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+.+++++|+++|+.||.|..+ ..+++++|||||+|.+.++|..||
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHH
Confidence 34456899999999999999999999999987665 447899999999999999999987
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.49 E-value=5.9e-14 Score=89.47 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=56.1
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCC-CCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKV-TGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+. +++++|+++|+.||.|..+.++.+.. +|.++|||||.|.+.++|+.||
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 45688999999999 99999999999999999999998875 5999999999999999999987
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.49 E-value=1.6e-13 Score=87.18 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=56.8
Q ss_pred CCCceEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSM-DEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||+.+ ++++|+++|+.||.|..+.++.++ +|+++|||||.|.+.++|..||
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHH
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHH
Confidence 456789999999995 999999999999999999999987 8999999999999999999986
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=9.4e-14 Score=87.79 Aligned_cols=58 Identities=19% Similarity=0.436 Sum_probs=51.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
......+|||+|||+++++++|+++|+.||.|..+.+.. ++|||||.|.+.++|+.||
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~ 75 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAK 75 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHH
Confidence 334567899999999999999999999999999998853 4699999999999999986
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=9.3e-14 Score=88.56 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=53.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....++|||+|||+++++++|+++|+.||.|..+.++.++. + ++|||||+|.+.++|+.||
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~ 98 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAI 98 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHH
Confidence 34568899999999999999999999999999999999873 3 5799999999999999997
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=8.6e-14 Score=87.67 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCCCCceEEEcCCCCCC---------CHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSM---------DEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....++|||+||+..+ ++++|+.+|++||.|..|.++. ++|||||.|.+.++|+.||
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~ 196 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAK 196 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHH
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHH
Confidence 34567899999999998 6999999999999999999874 4799999999999999886
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=1.8e-13 Score=78.12 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=48.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|+ ++++++|+++|+.||.|..+.+. +++|||||+|.+.++|+.||
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai 90 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAV 90 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHH
Confidence 45689999995 69999999999999999999885 57899999999999999987
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.46 E-value=5.1e-13 Score=74.61 Aligned_cols=62 Identities=6% Similarity=-0.044 Sum_probs=52.5
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHhhcCCCeeEEEEeecCCC-CCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPR-----SMDEADLTKMFSEYGRVYNINVLRDKVT-GQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++.|++.||.. +..+++|++.|++||.|..+.++.++.+ ++++||+||.|.+.++|+.||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai 73 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAV 73 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHH
Confidence 3457899999952 2367899999999999999999988644 689999999999999999987
No 191
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=2e-13 Score=89.86 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=50.7
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQ--IPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~n--L~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++.+.+|||+| |++.+++++|+++|++||.|..+.+.. ++|||||+|.+.++|++||
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai 73 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAY 73 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHH
Confidence 455678999999 588999999999999999998876632 5799999999999999997
No 192
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.1e-13 Score=73.60 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=43.8
Q ss_pred Cce-EEEcCCCCCCCHHH----HHHHhhcC-CCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIK-MFVGQIPRSMDEAD----LTKMFSEY-GRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~-l~v~nL~~~~~~~~----l~~~f~~~-g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+ |||+|||+.+++++ |+++|+.| |.|..+ ++ |+|||.|.+.++|+.||
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~ 63 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQ 63 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHH
Confidence 455 99999999999887 55899999 599887 34 99999999999999986
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=1e-13 Score=84.00 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=51.0
Q ss_pred CceEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPR-SMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++|||+|||+ .+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|+.||
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~ 58 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAM 58 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 47899999999 99999999999999999999987764 789999999999999987
No 194
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.42 E-value=9.4e-13 Score=83.53 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=51.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
....+|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|+.||
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~ 261 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAAR 261 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHH
Confidence 346789999999999999999999999999999988544 589999999999999986
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=4.4e-13 Score=79.29 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=47.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEY----G-------RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+.++|||+|||+++++++|+++|+.| | .+..+.+ ++++|||||+|.++++|+.||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~ 68 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM 68 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH
Confidence 35799999999999999999999999 6 6666654 345899999999999999987
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=5.4e-13 Score=80.47 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=47.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEY----G-------RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..++|||+|||+++++++|+++|+.| | .|..+.+ ++++|||||+|.+.++|+.||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al 68 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM 68 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH
Confidence 35799999999999999999999999 4 4555543 567899999999999999987
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.34 E-value=4.4e-12 Score=76.75 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=50.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...+|||+|||..+++++|+++|+.|| .|..+.+..+ .+|||||+|.+.++|..||
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~ 175 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQAL 175 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHH
Confidence 367899999999999999999999999 9999988654 3799999999999999986
No 198
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.4e-12 Score=69.95 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 38 RSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 38 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+++++|+++|++||.|..+.++ ++++|||||+|.+.++|+.||
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai 71 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAV 71 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHH
Confidence 568899999999999999999987 468999999999999999987
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.31 E-value=8.1e-12 Score=77.53 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=50.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYG-RVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+|||+|||+.+++++|+++|+.|| .|..+.+..+ .+|||||+|.+.++|+.||
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHH
Confidence 57899999999999999999999999 9999988543 3689999999999999986
No 200
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.1e-11 Score=68.37 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=48.9
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 24 PDPDFIKMFVGQIPRSMD-----------EADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 24 ~~~~~~~l~v~nL~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+..++.|++.||..... +++|+++|++||.|..+.+ .++ .++|||||.|.+.++|+.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHH
Confidence 445578899999944332 4799999999999999965 444 37999999999999999987
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=1e-12 Score=73.19 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=45.9
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 33 VGQIPRSMDEADLTKMF------------SEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 33 v~nL~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+.+||+.+++++|++.| ++||.|..+.++.+. +++++||+||.|.++++|++||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~ 85 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAV 85 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHH
Confidence 55677777777776666 999999999999877 5899999999999999999987
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.20 E-value=3.1e-11 Score=67.31 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=49.9
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHhhcCCCeeEEEEeecCCC--CCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQI--PRSMD--------EADLTKMFSEYGRVYNINVLRDKVT--GQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~--g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++.|.+.|+ |.... .++|++.|++||.|..+.++.++.+ ++++||+||.|.+.++|++||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai 76 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAM 76 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHH
Confidence 3567888887 33332 3689999999999999999988744 468999999999999999987
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=7e-11 Score=67.18 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=50.8
Q ss_pred CCceEEEcCCC--CCC---CHHHHHHHhhcCCCeeEEEEeecCC----CCCceeEEEEEeCCHHHHhchh
Q psy6962 27 DFIKMFVGQIP--RSM---DEADLTKMFSEYGRVYNINVLRDKV----TGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 27 ~~~~l~v~nL~--~~~---~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.++.|++.|+- .++ -+++|++.|++||.|..+.++.++. +++++||+||.|.+.++|++||
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai 88 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAI 88 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHH
Confidence 45789999983 222 3689999999999999999998764 4678899999999999999987
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.8e-10 Score=65.80 Aligned_cols=56 Identities=13% Similarity=-0.064 Sum_probs=48.8
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCC-HHHHhchh
Q psy6962 26 PDFIKMFVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNIT-QDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~-~~~a~~ai 87 (88)
+....|||+||++. ++.++|+++|+.||.|..|.+..+.. .|||.|.+ +++|..||
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHH
Confidence 44578999999999 99999999999999999999877652 49999999 78888775
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.81 E-value=4.6e-09 Score=59.31 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 43 ADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 43 ~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
++|++.|++||.|..+.+..+. ++||+||.|.+.++|+.||
T Consensus 32 edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai 72 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAV 72 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHH
T ss_pred HHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHH
Confidence 5789999999999999886553 5899999999999999987
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=1.5e-07 Score=57.98 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=41.1
Q ss_pred CHHHHHHHhhcCCCeeEEEEeecC----CCCCceeEEEEEeCCHHHHhchh
Q psy6962 41 DEADLTKMFSEYGRVYNINVLRDK----VTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 41 ~~~~l~~~f~~~g~v~~~~~~~~~----~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+++|++.|++||.|..+.++.+. .+++++|++||+|.+.++|++||
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~ 192 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAI 192 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHH
Confidence 467899999999999999998654 34589999999999999999987
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=1.9e-06 Score=46.67 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=42.0
Q ss_pred CCCceEEEcCCC----CCCCH----HHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIP----RSMDE----ADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+...+|+|.-.+ ...-+ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi 66 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVL 66 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGG
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHH
Confidence 345677776655 12222 5789999999999999987754 799999999999997
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=8.2e-06 Score=44.46 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCCCceEEEcCCCCC------CCH---HHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRS------MDE---ADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~------~~~---~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+...+++|.-++.. ..+ .+|.+.|..||.+..+++..++ +||+|.+.++|.+||
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI 75 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVL 75 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHH
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHH
Confidence 445678888877642 232 4689999999999999988765 999999999999987
No 209
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.02 E-value=5.3e-05 Score=41.47 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=43.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+.+++ ..|..+...||.++|+.|| ...|+++.|. -||+.|.+++.|..|+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al 66 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAV 66 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 455666 9999999999999999999 5667777765 7999999999998764
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00028 Score=39.50 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=48.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSEY-----GRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
...++|-+-+||-.++++.++.+..++ |.+..+.+..|- |-|+|+|.+...|-+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKa 78 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKM 78 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHH
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHH
Confidence 346788899999999999999999999 999999887765 6899999998888765
No 211
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.64 E-value=9e-05 Score=40.65 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=41.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+-+++ ..|..+...+|.++|+.|| ...|+++.|. -||+.|.+++.|..|+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al 56 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAV 56 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 44666 9999999999999999999 5677877765 7899999888887664
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.018 Score=31.73 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=42.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc---C--CCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 26 PDFIKMFVGQIPRSMDEADLTKMFSE---Y--GRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 26 ~~~~~l~v~nL~~~~~~~~l~~~f~~---~--g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++|.|.|||+.+.++.|.-.|+. - |+|..+... + +-|+|.|.+.+.|+..+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--~------~~AvItF~d~~va~rVL 64 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--G------CGGVLTFREPADAERVL 64 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--T------TEEEEEESSHHHHHHHH
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--C------CcEEEEEcChHHHHHHh
Confidence 34578999999999999999999986 2 456665532 1 56799999999988754
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.85 E-value=0.0069 Score=32.61 Aligned_cols=56 Identities=7% Similarity=0.059 Sum_probs=41.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCC--ceeEEEEEeCCHHHHh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ--SKGLKNTSNITQDFST 84 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~--~~g~~fv~f~~~~~a~ 84 (88)
.+|-|.+||+..+++++.+.+.....+.....+.-+.+.+ ..+-|+|.|++.+++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~ 59 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 59 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHH
Confidence 4788999999999999999999888765555544332322 3456999999977654
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.78 E-value=0.00086 Score=45.82 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=38.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
+.|+|. .|...++.+|.+.|++||+|..+.+-.+. .-|+.|+|.+.++++.++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHH
Confidence 569997 79999999999999999999998665432 269999999988877653
No 215
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.73 E-value=0.0021 Score=37.13 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=23.8
Q ss_pred EEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 57 NINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 57 ~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.+++..+. .+++||+||+|.++++|+.|+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al 30 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVF 30 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHH
Confidence 35566666 369999999999999999886
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.63 E-value=0.059 Score=30.35 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=43.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 25 ~~~~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
.....-|.|-+.|+.. ...+...|+.||.|...... .....-.|.|.++.+|++|+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL 76 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKAL 76 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHH
Confidence 3345678888988885 56677888999999887641 23458889999999999987
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.30 E-value=0.024 Score=30.86 Aligned_cols=57 Identities=5% Similarity=-0.021 Sum_probs=37.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCC--ceeEEEEEeCCHHHHh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ--SKGLKNTSNITQDFST 84 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~--~~g~~fv~f~~~~~a~ 84 (88)
+.+|-|..||+..+++++.+.+...-.+.....+.-..+.+ ...-|+|.|++.++..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~ 67 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 67 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHH
Confidence 46799999999999999888887765543222221111212 2345899999987654
No 218
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.85 E-value=0.13 Score=35.43 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=39.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhchh
Q psy6962 28 FIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 28 ~~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ai 87 (88)
...++++ +|..+...+|.++|+.||. ..|+++.+. .+||.|.+.+.|..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAV 490 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHH
Confidence 3456666 8888899999999999995 455554443 6999999999987654
No 219
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.46 E-value=0.18 Score=27.74 Aligned_cols=53 Identities=6% Similarity=0.036 Sum_probs=39.1
Q ss_pred CceEEEcCCCCCC-C----HHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHhch
Q psy6962 28 FIKMFVGQIPRSM-D----EADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFSTTT 86 (88)
Q Consensus 28 ~~~l~v~nL~~~~-~----~~~l~~~f~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 86 (88)
..+|++.||+.++ . .+.++++|..|+++......++- .=..|.|.++++|..|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~A 62 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADA 62 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHH
Confidence 3579999998866 2 25678999999988776555432 2346889999888876
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=85.99 E-value=0.68 Score=26.14 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.5
Q ss_pred CCCceeEEEEEeCCHHHHhchh
Q psy6962 66 TGQSKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 66 ~g~~~g~~fv~f~~~~~a~~ai 87 (88)
..+.+|+++++|.+.++|+.||
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~ 30 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVF 30 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTH
T ss_pred cccccccceeeecCHHHHHHHH
Confidence 3568999999999999999986
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=69.15 E-value=3.4 Score=23.56 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=36.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeec--------CCCCC-----ceeEEEEEeCCHHHHhchh
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYN-INVLRD--------KVTGQ-----SKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~-~~~~~~--------~~~g~-----~~g~~fv~f~~~~~a~~ai 87 (88)
.-|-|-+.|++... .+-+.|++||.|.. ...... +...+ ......|.|.++.+|..|+
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL 79 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL 79 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH
Confidence 45667777776554 45667899998865 211110 00111 2346789999999999987
No 222
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=33.55 E-value=56 Score=20.44 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=24.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVL 61 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~ 61 (88)
..+.|+|+|+.++...+..++.. ..+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 35689999999999999998877 555544443
No 223
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=32.83 E-value=11 Score=21.62 Aligned_cols=10 Identities=20% Similarity=0.033 Sum_probs=7.3
Q ss_pred ceeEEEEEeC
Q psy6962 69 SKGLKNTSNI 78 (88)
Q Consensus 69 ~~g~~fv~f~ 78 (88)
.+||+||.-.
T Consensus 20 ~kGfGFI~~~ 29 (148)
T 3ts2_A 20 RMGFGFLSMT 29 (148)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeeEEeeC
Confidence 4689998754
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.72 E-value=79 Score=18.73 Aligned_cols=36 Identities=6% Similarity=-0.032 Sum_probs=25.3
Q ss_pred CHHHHHHHh--hcCCCeeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 41 DEADLTKMF--SEYGRVYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 41 ~~~~l~~~f--~~~g~v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
+...|++.| ..|.++....+ ..+ .-+.|++.|.|.+
T Consensus 34 s~~~l~~~~~~~~F~p~kv~~l-~~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 34 SGSKLRDEYILRGFNPTRVRPL-WNY--LGHSGTAIVEFNK 71 (172)
T ss_dssp CSHHHHHHHHHTTCCCSEEEEE-ECS--SBEEEEEEEECCS
T ss_pred CHHHHHHHHHhcCCCCceeEec-ccC--CCCceeEEEEecC
Confidence 346788866 89988765443 333 2378999999976
No 225
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=32.60 E-value=34 Score=18.47 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.6
Q ss_pred ceeEEEEEeCCHHHHhchh
Q psy6962 69 SKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 69 ~~g~~fv~f~~~~~a~~ai 87 (88)
.+||-||+=.+......||
T Consensus 50 lkGyIyVEA~~~~~V~~ai 68 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAI 68 (106)
T ss_dssp CCSEEEEEESSHHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHH
Confidence 6899999999988888776
No 226
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.06 E-value=28 Score=18.59 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=15.3
Q ss_pred EcCCCCCCCHHHHHHHh-hcCCC
Q psy6962 33 VGQIPRSMDEADLTKMF-SEYGR 54 (88)
Q Consensus 33 v~nL~~~~~~~~l~~~f-~~~g~ 54 (88)
|.++...+|..|+-..+ ...|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 45789999998887654 44453
No 227
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=30.14 E-value=85 Score=18.29 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCHHHHHHHhhcCCCee---EEEEeecCCCCCceeEEEEE
Q psy6962 40 MDEADLTKMFSEYGRVY---NINVLRDKVTGQSKGLKNTS 76 (88)
Q Consensus 40 ~~~~~l~~~f~~~g~v~---~~~~~~~~~~g~~~g~~fv~ 76 (88)
.++++|+++-...|.+. +..+..+..+|+.+.++|-.
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 57899999999998773 33444453478888888753
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.81 E-value=17 Score=22.82 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=24.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRVYNINVL 61 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~ 61 (88)
....|+|||+.++...|..++.....+....++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 356799999999999999998765555544433
No 229
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=26.45 E-value=38 Score=13.12 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=8.8
Q ss_pred HHHHHHHhhcCC
Q psy6962 42 EADLTKMFSEYG 53 (88)
Q Consensus 42 ~~~l~~~f~~~g 53 (88)
-.+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 356788888876
No 230
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=25.57 E-value=65 Score=16.06 Aligned_cols=10 Identities=20% Similarity=0.239 Sum_probs=7.2
Q ss_pred ceeEEEEEeC
Q psy6962 69 SKGLKNTSNI 78 (88)
Q Consensus 69 ~~g~~fv~f~ 78 (88)
.+||+||.-.
T Consensus 13 ~KGfGFI~~~ 22 (74)
T 2k5n_A 13 DKGFGFIKDE 22 (74)
T ss_dssp TTTEEEEEES
T ss_pred CCCeEEEecC
Confidence 4788888754
No 231
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.65 E-value=83 Score=16.38 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=17.5
Q ss_pred CeeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 54 RVYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 54 ~v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
.|..+++..-...|+-++|+-|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 35566665555467888888888765
No 232
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.18 E-value=17 Score=22.52 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=23.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe
Q psy6962 31 MFVGQIPRSMDEADLTKMFSEYGRVYNINVL 61 (88)
Q Consensus 31 l~v~nL~~~~~~~~l~~~f~~~g~v~~~~~~ 61 (88)
..|+|+|+.++...|..++.....+....++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 3789999999999999998866555554443
No 233
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=23.64 E-value=43 Score=13.99 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=11.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHh
Q psy6962 27 DFIKMFVGQIPRSMDEADLTKMF 49 (88)
Q Consensus 27 ~~~~l~v~nL~~~~~~~~l~~~f 49 (88)
..++||||+- .++|+.+-
T Consensus 4 qvrtiwvggt-----peelkklk 21 (36)
T 2ki0_A 4 QVRTIWVGGT-----PEELKKLK 21 (36)
T ss_dssp SCCCCCBCCC-----HHHHHHHH
T ss_pred eeEEEEecCC-----HHHHHHHH
Confidence 3467899874 45555443
No 234
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=23.14 E-value=73 Score=20.90 Aligned_cols=22 Identities=14% Similarity=0.082 Sum_probs=18.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSE 51 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~ 51 (88)
...|+|||+.++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4689999999998888777763
No 235
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.23 E-value=1e+02 Score=16.52 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=17.7
Q ss_pred CeeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 54 RVYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 54 ~v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
.|..+++..-...|+-++|+-|.|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 35566665554467888888888865
No 236
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.02 E-value=62 Score=16.73 Aligned_cols=19 Identities=21% Similarity=0.025 Sum_probs=14.7
Q ss_pred ceeEEEEEeCCHHHHhchh
Q psy6962 69 SKGLKNTSNITQDFSTTTI 87 (88)
Q Consensus 69 ~~g~~fv~f~~~~~a~~ai 87 (88)
-.||.||++...++...+|
T Consensus 49 fPGYVfVe~~~~~~~~~~I 67 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELI 67 (92)
T ss_dssp STTEEEEEESSHHHHHHHH
T ss_pred cCCEEEEEEecchhHHHHH
Confidence 6899999998877665443
No 237
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=21.87 E-value=92 Score=19.09 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=20.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCee
Q psy6962 30 KMFVGQIPRSMDEADLTKMFSEYGRVY 56 (88)
Q Consensus 30 ~l~v~nL~~~~~~~~l~~~f~~~g~v~ 56 (88)
.+.|+|+|+.++...+..++.....+.
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~ 118 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIA 118 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcc
Confidence 578999999999888877776433333
No 238
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=21.85 E-value=66 Score=16.56 Aligned_cols=20 Identities=10% Similarity=0.458 Sum_probs=17.1
Q ss_pred EcCCCCCCCHHHHHHHhhcC
Q psy6962 33 VGQIPRSMDEADLTKMFSEY 52 (88)
Q Consensus 33 v~nL~~~~~~~~l~~~f~~~ 52 (88)
-|.|+..++++.|+.++...
T Consensus 49 ~Gqi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 49 MGRVRSKITDEQLKELLKRV 68 (80)
T ss_dssp CCSSCCCCCHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHH
Confidence 36888999999999999865
No 239
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.80 E-value=1.1e+02 Score=16.61 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=17.1
Q ss_pred eeEEEEeecCCCCCceeEEEEEeCC
Q psy6962 55 VYNINVLRDKVTGQSKGLKNTSNIT 79 (88)
Q Consensus 55 v~~~~~~~~~~~g~~~g~~fv~f~~ 79 (88)
|..+++..-...|+-++|+-|.|.+
T Consensus 6 iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 6 VTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp EEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEeCCCCCEEEEEEEEECC
Confidence 4556665555567888888888865
No 240
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.73 E-value=79 Score=19.31 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=20.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCCe
Q psy6962 29 IKMFVGQIPRSMDEADLTKMFSEYGRV 55 (88)
Q Consensus 29 ~~l~v~nL~~~~~~~~l~~~f~~~g~v 55 (88)
..+.++|+|+.++...+..++.....+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGC
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCC
Confidence 347889999999999888888754333
No 241
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.48 E-value=85 Score=15.73 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=7.3
Q ss_pred ceeEEEEEeC
Q psy6962 69 SKGLKNTSNI 78 (88)
Q Consensus 69 ~~g~~fv~f~ 78 (88)
.+||+||.-.
T Consensus 19 ~kGfGFI~~~ 28 (79)
T 1h95_A 19 RNGYGFINRN 28 (79)
T ss_dssp TTTEEEEEEG
T ss_pred CCCcEEEecC
Confidence 4789998753
No 242
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=20.99 E-value=47 Score=13.33 Aligned_cols=21 Identities=14% Similarity=0.176 Sum_probs=12.3
Q ss_pred CCCCCCCHHHHHHHhhcCCCe
Q psy6962 35 QIPRSMDEADLTKMFSEYGRV 55 (88)
Q Consensus 35 nL~~~~~~~~l~~~f~~~g~v 55 (88)
|.|+++.-..-.+.|..||.+
T Consensus 2 naPFeiGi~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRA 22 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSC
T ss_pred CCceeEeeEecHHHHHHHhHH
Confidence 345555544445667777764
Done!