RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6962
(88 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 44.6 bits (104), Expect = 1e-07
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 21 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 71
PEQ K+F+G + + L F ++G + + V+RD T +S+G
Sbjct: 3 PEQLR----KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRG 49
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 41.9 bits (98), Expect = 2e-07
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 71
KMF+G + + L + F ++G V V+RD +T +S+G
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 43
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 41.1 bits (96), Expect = 5e-07
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 71
++VG + + EA L + FS G + +I V RD +T +S G
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 43
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 40.8 bits (95), Expect = 1e-06
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 21 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 70
+ D +F Q+ + DL FS G+V ++ ++ D+ + +SK
Sbjct: 11 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 60
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 39.9 bits (93), Expect = 2e-06
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRD-KVTGQSKG 71
K+ V IP ++ ++ ++FS +G + + + + TG +G
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRG 52
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 38.0 bits (88), Expect = 7e-06
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 69
K+FVG + E + + F +G V +I + D T +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR 40
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 38.5 bits (89), Expect = 9e-06
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 21 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 71
++ F K+F+G + E L + ++G++ + V+RD + +S+G
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 37.8 bits (87), Expect = 1e-05
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLR-----DKVTGQSKG 71
+++VG IP + E + F+ R+ + Q K
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN 49
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 37.6 bits (87), Expect = 1e-05
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ 68
Q P ++ G I + + + + FS +G++ I V +K
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSF 58
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 36.9 bits (85), Expect = 2e-05
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 70
K+F+G + + L F ++G + + V+RD T +S+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 48
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 36.9 bits (85), Expect = 2e-05
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 69
+ V +P+ M + +L +F G + ++RD TG S
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYS 43
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 36.5 bits (84), Expect = 2e-05
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 69
KMF+G + + DL FS++G V + + D +TG+S
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRS 40
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 36.9 bits (85), Expect = 3e-05
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 69
++V +PR++ + L +F +YG + N+LRDK+TG+
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRP 47
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.8 bits (82), Expect = 7e-05
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 21 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 69
P + D + V + E DL ++F +G + I + +DK TGQS
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 49
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 35.3 bits (81), Expect = 1e-04
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLR 62
K+ V + + +AD+ ++F+E+G + V
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 34
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 35.5 bits (81), Expect = 1e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 71
Q D F K+FVG +P +A L K F +G + V+ D+ TG+S+G
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRG 53
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 35.0 bits (80), Expect = 1e-04
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 31 MFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNIT 79
+F+ + S E L +FS+ G + + + + K +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVE 49
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 34.6 bits (79), Expect = 2e-04
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQ 68
+F+ + +S+D L FS +G + + V+ D+ +
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK 48
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 34.3 bits (78), Expect = 2e-04
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 71
++V +P++M + +L ++FS+YGR+ +L D+VTG S+G
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 49
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 34.3 bits (78), Expect = 3e-04
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 32 FVGQIPRSMDEADLTKMFSEYGRVYNINVL-RDKVTGQSKG 71
F+G + +DE L FS +G + + RD TG SKG
Sbjct: 2 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 42
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 33.9 bits (77), Expect = 3e-04
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 71
P + V +P ++ ++ F Y + L+ G G
Sbjct: 6 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTG 52
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 34.1 bits (78), Expect = 4e-04
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 23 QPDPDFI--KMFVGQI-PRSMDEADLTKMFSEYGRVYNINV 60
+ DP + ++F+G + + ++D+ +FS+YG++ +V
Sbjct: 8 KTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV 48
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 33.8 bits (77), Expect = 4e-04
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 64
++VG + E + ++FS+ G + I + DK
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 43
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 33.5 bits (76), Expect = 5e-04
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 64
K+++G + ++ DL ++F + VL
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS 37
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 33.5 bits (76), Expect = 5e-04
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 22 EQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 69
PDP+ + V + E DL ++FS+YG + +++++ D+ + +S
Sbjct: 4 ANPDPNC-CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 50
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 33.5 bits (76), Expect = 6e-04
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYN--INVLRDKVTGQSKG 71
++F+G IP+ ++ + ++ I +++G
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRG 46
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 33.1 bits (75), Expect = 8e-04
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 64
++ V IP + DL +MF ++G++ ++ ++ ++
Sbjct: 13 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 47
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 32.7 bits (74), Expect = 0.001
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 21 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQS 69
P ++VG + + E L ++F + G V N ++ +D+VTGQ
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQH 50
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 32.4 bits (73), Expect = 0.001
Identities = 9/60 (15%), Positives = 17/60 (28%)
Query: 25 DPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQDFST 84
D D ++V + S+ DL F + G V + + +
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 32.1 bits (72), Expect = 0.002
Identities = 5/52 (9%), Positives = 17/52 (32%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKGLKNTSNITQD 81
+++ P S + ++ + + V L S+ +++
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 54
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 31.9 bits (72), Expect = 0.002
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNIN 59
++FVG +P + E ++ K+F +YG+ +
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVF 39
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 30.8 bits (69), Expect = 0.006
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 23 QPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDK 64
+ D ++VG + R + E + ++FS+ G + ++ +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH 44
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 30.6 bits (68), Expect = 0.007
Identities = 5/43 (11%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 30 KMFVGQIPRSMDEADLTKMF---SEYGRVYNINVLRDKVTGQS 69
+FV + + + + ++ K ++G+++ + + S
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGS 52
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 30.6 bits (68), Expect = 0.009
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 24 PDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSKG 71
+ + + IP S+ + D+ + N + GQ G
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLG 51
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 29.6 bits (66), Expect = 0.018
Identities = 3/40 (7%), Positives = 15/40 (37%)
Query: 21 PEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINV 60
+ + + ++ E +L ++F + + ++
Sbjct: 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ 48
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 29.2 bits (65), Expect = 0.021
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTG 67
++V + S E + K F+ V + +
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYA 47
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.2 bits (65), Expect = 0.024
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVYNI 58
+FVG+ M E +L + FS+YG V ++
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDV 35
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 28.8 bits (64), Expect = 0.048
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRV 55
+++ +P + ++ +F +YG +
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPI 34
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.5 bits (63), Expect = 0.057
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 17 SMSLPEQPDPDFIKMFVGQIPRSMDEADLTKMFSEYGRVYNINVLRDKVTGQSK 70
S + + + + E T+M +YG V +NV +
Sbjct: 16 SSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLV 68
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.1 bits (54), Expect = 0.70
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 30 KMFVGQIPRSMDEADLTKMFSEYGRVY 56
+ V +P+ + ++ + +Y Y
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLKY 33
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 24.7 bits (53), Expect = 1.1
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 32 FVGQIPRS-MDEADLTKMFSEYGRVYNINVLRDKVTGQS 69
+ R L ++ +G + N +L
Sbjct: 12 HIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFI 50
>d1v1oa1 b.40.2.2 (A:18-108) Exotoxin 1 (SET1, Superantigen-like
protein 7) {Staphylococcus aureus [TaxId: 1280]}
Length = 91
Score = 22.8 bits (49), Expect = 5.1
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 54 RVYNINVLRDKVTGQSKGLKNTSNITQDFSTT 85
+++I L + +S N S ++++ +
Sbjct: 4 HLHDIRDLHRYYSSESFEYSNVSGKVENYNGS 35
>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial
(DECR) {Human (Homo sapiens), [TaxId: 9606]}
Length = 294
Score = 23.2 bits (49), Expect = 6.5
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 4 RINPLMFSLVCFRSMSLPEQPDPDFIKMFVGQIP 37
R N + + + P F K +G+IP
Sbjct: 200 RFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP 233
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 23.0 bits (49), Expect = 7.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 45 LTKMFSEYGRVYNINVLRDKVTGQ 68
L + +G +Y L K G+
Sbjct: 458 LREKIHRWGSIYPPKELLKKAIGE 481
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.388
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 308,395
Number of extensions: 12499
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 46
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)