BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6963
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 75 AMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYD 134
++G L+EP+T KDSS N G+S MQGWRI+ EDAH+ IL+ D +FFAVYD
Sbjct: 1 SLGAYLSEPLTTKDSSDESNEFLASGSSSMQGWRISQEDAHNCILNFDDQ--CSFFAVYD 58
Query: 135 GHGGSKIAQFAGKHLHKYIVKTREFKEGNITEALKKGFM 173
GHGG+++AQ+ HL ++ + +ALK+ F+
Sbjct: 59 GHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFL 97
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 76 MGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGT-AFFAVYD 134
MG L +P K ++ Q + G S MQGWR+ MEDAH+ ++ LP + +FFAVYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 135 GHGGSKIAQFAGKHLHKYIVKTREFKEG-------NITEALKKGFMXXXXXXXXXXXXX- 186
GH GS++A++ +HL +I ++FK N+ ++ GF+
Sbjct: 61 GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKH 120
Query: 187 -XXXXGTTAICILIKDNILY---CRNVRGL 212
G+TA+ +LI Y C + RGL
Sbjct: 121 GADRSGSTAVGVLISPQHTYFINCGDSRGL 150
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 76 MGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGT-AFFAVYD 134
MG L +P K ++ Q + G S MQGWR+ MEDAH+ ++ LP + +FFAVYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 135 GHGGSKIAQFAGKHLHKYIVKTREFKEG-------NITEALKKGFMXXXXXXXXXXXXX- 186
GH GS++A++ +HL +I ++FK N+ ++ GF+
Sbjct: 61 GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKH 120
Query: 187 -XXXXGTTAICILIKDNILY---CRNVRGL 212
G+TA+ +LI Y C + RGL
Sbjct: 121 GADRSGSTAVGVLISPQHTYFINCGDSRGL 150
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 74 FAMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDD-PGTAFFAV 132
++G L +P T K ++ + G S MQGWR+ MEDAH+ ++ +P +FFAV
Sbjct: 1 MSLGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAV 60
Query: 133 YDGHGGSKIAQFAGKHLHKYIVKTREFKEG------------NITEALKKGFM 173
YDGH GS++A + HL ++I +F+ N+ ++ GF+
Sbjct: 61 YDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFL 113
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 15/69 (21%)
Query: 95 PLYKVGASCMQGWRITMEDAHSHIL--------SLPD---DPGTA--FFAVYDGHGGSKI 141
PLY + C G R MEDA S I S+ D DP +A FF VYDGHGGS++
Sbjct: 9 PLYGFTSIC--GRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQV 66
Query: 142 AQFAGKHLH 150
A + + +H
Sbjct: 67 ANYCRERMH 75
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 15/69 (21%)
Query: 95 PLYKVGASCMQGWRITMEDAHSHIL--------SLPD---DPGTA--FFAVYDGHGGSKI 141
PLY + C G R MEDA S I S+ D DP +A FF VYDGHGGS++
Sbjct: 12 PLYGFTSIC--GRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQV 69
Query: 142 AQFAGKHLH 150
A + + +H
Sbjct: 70 ANYCRERMH 78
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 20/74 (27%)
Query: 95 PLYKVGASCMQGWRITMEDAHS---HILSLP------DDPGTA---------FFAVYDGH 136
PL+ G +QG R MEDA + H L LP D G + FF VYDGH
Sbjct: 20 PLW--GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGH 77
Query: 137 GGSKIAQFAGKHLH 150
GG K+A + LH
Sbjct: 78 GGHKVADYCRDRLH 91
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 20/74 (27%)
Query: 95 PLYKVGASCMQGWRITMEDAHS---HILSLP------DDPGTA---------FFAVYDGH 136
PL+ G +QG R MEDA + H L LP D G + FF VYDGH
Sbjct: 17 PLW--GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGH 74
Query: 137 GGSKIAQFAGKHLH 150
GG K+A + LH
Sbjct: 75 GGHKVADYCRDRLH 88
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 20/74 (27%)
Query: 95 PLYKVGASCMQGWRITMEDAHS---HILSLP------DDPGTA---------FFAVYDGH 136
PL+ G +QG R MEDA + H L LP D G + FF VYDGH
Sbjct: 27 PLW--GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGH 84
Query: 137 GGSKIAQFAGKHLH 150
GG K+A + LH
Sbjct: 85 GGHKVADYCRDRLH 98
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 20/74 (27%)
Query: 95 PLYKVGASCMQGWRITMEDAHS---HILSLP------DDPGTA---------FFAVYDGH 136
PL+ G +QG R MEDA + H L LP D G + FF VYDGH
Sbjct: 18 PLW--GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGH 75
Query: 137 GGSKIAQFAGKHLH 150
GG K+A + LH
Sbjct: 76 GGHKVADYCRDRLH 89
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 15/69 (21%)
Query: 95 PLYKVGASCMQGWRITMEDAHSHIL--------SLPD---DPGTA--FFAVYDGHGGSKI 141
PLY + C G R MEDA S I S+ D DP +A FF VYDGHGGS++
Sbjct: 24 PLYGFTSIC--GRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQV 81
Query: 142 AQFAGKHLH 150
A + + +H
Sbjct: 82 ANYCRERMH 90
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 20/74 (27%)
Query: 95 PLYKVGASCMQGWRITMEDAHS---HILSLP------DDPGTA---------FFAVYDGH 136
PL+ G +QG R MEDA + H L LP D G + FF VYDGH
Sbjct: 14 PLW--GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGH 71
Query: 137 GGSKIAQFAGKHLH 150
GG K+A + LH
Sbjct: 72 GGHKVADYCRDRLH 85
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 20/74 (27%)
Query: 95 PLYKVGASCMQGWRITMEDAHS---HILSLP------DDPGTA---------FFAVYDGH 136
PL+ G +QG R MEDA + H L LP D G + FF VYDGH
Sbjct: 3 PLW--GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGH 60
Query: 137 GGSKIAQFAGKHLH 150
GG K+A + LH
Sbjct: 61 GGHKVADYCRDRLH 74
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
Query: 91 SVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLH 150
S++ L VG + G R ED L D+ +FAVYDGHGG A F H+
Sbjct: 2 SLKISLENVGCASQIGKRKENEDRFD-FAQLTDE--VLYFAVYDGHGGPAAADFCHTHME 58
Query: 151 KYIVKTREFKEGNITEALKKGFMXXXXX----XXXXXXXXXXXXGTTAICILIKDNI 203
K I+ KE N+ L F+ GTTA L++D I
Sbjct: 59 KCIMDLLP-KEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGI 114
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 25/101 (24%)
Query: 95 PLYKVGASCMQGWRITMEDAHSHI--------LSLPDDPGTA---------FFAVYDGHG 137
PLY V + C G R MED+ S I SL D T FF VYDGHG
Sbjct: 12 PLYGVTSIC--GRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHG 69
Query: 138 GSKIAQFAGKHLH----KYIVKTR-EFKEGNI-TEALKKGF 172
GS++A + + +H + IVK + EF +G+ E KK
Sbjct: 70 GSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKAL 110
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 96 LYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVK 155
L VG + G R ED L D+ +FAVYDGHGG A F H+ K I+
Sbjct: 121 LENVGCASQIGKRKENEDRFD-FAQLTDE--VLYFAVYDGHGGPAAADFCHTHMEKCIMD 177
Query: 156 TREFKEGNITEALKKGFMXXXXX----XXXXXXXXXXXXGTTAICILIKDNI 203
KE N+ L F+ GTTA L++D I
Sbjct: 178 LLP-KEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGI 228
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 101 ASCMQGWRITMEDAHSHILSLP--DDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTRE 158
A+ G R T EDA ++S P P AV+DGH G +Q+ KH K++ K E
Sbjct: 17 AATXLGRRPTDEDAI--LVSAPATSRPNVRIKAVFDGHAGEATSQYCAKHAAKHLGKLSE 74
Query: 159 FKEGNITEA 167
F + +A
Sbjct: 75 FTFAEVKKA 83
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 67 SHPSGFSFAMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDD 124
SH F A + E + + S VQ P A C G++I +E+ HS + SL D
Sbjct: 94 SHILAFFAASDGIVNENLVERFSQEVQVP----EARCFYGFQILIENVHSEMYSLLID 147
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
Length = 351
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 67 SHPSGFSFAMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDD 124
SH F A + E + + S VQ P A C G++I +E+ HS + SL D
Sbjct: 90 SHILAFFAASDGIVNENLVERFSQEVQVP----EARCFYGFQILIENVHSEMYSLLID 143
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 360
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 122 PDDPGTAFFAVYDGHGGSKIAQFAGKHLHKY 152
PDD AF V G GG + A FAG Y
Sbjct: 105 PDDERNAFLEVRAGTGGDEAALFAGDLFRMY 135
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 67 SHPSGFSFAMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDD 124
SH F A + E + + S VQ A C G++I ME+ HS + SL D
Sbjct: 64 SHVLAFFAASDGIVNENLVERFSQEVQI----TEARCFYGFQIAMENIHSEMYSLLID 117
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
pdb|4DJN|B Chain B, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
Length = 311
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 67 SHPSGFSFAMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDD 124
SH F A + E + + S VQ P A C G++I +E+ HS SL D
Sbjct: 79 SHILAFFAASDGIVNENLVERFSQEVQVP----EARCFYGFQILIENVHSEXYSLLID 132
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 67 SHPSGFSFAMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDD 124
SH F A + E + + S VQ A C G++I ME+ HS + SL D
Sbjct: 71 SHVLAFFAASDGIVNENLVERFSQEVQ----ITEARCFYGFQIAMENIHSEMYSLLID 124
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 67 SHPSGFSFAMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDD 124
SH F A + E + + S VQ A C G++I ME+ HS + SL D
Sbjct: 129 SHVLAFFAASDGIVNENLVERFSQEVQ----VTEARCFYGFQIAMENIHSEMYSLLID 182
>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
Unknown Function (np_812590.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
Length = 409
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 133 YDGHGGSKIAQFAGKHLHKYIVK 155
YDG GG IA+ GK + KY V+
Sbjct: 387 YDGEGGYWIAEAWGKAIRKYAVE 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,303,776
Number of Sequences: 62578
Number of extensions: 176568
Number of successful extensions: 304
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 25
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)