Query psy6963
Match_columns 212
No_of_seqs 222 out of 1352
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 23:14:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697|consensus 99.9 1.3E-26 2.8E-31 196.0 10.6 137 76-212 1-147 (379)
2 PLN03145 Protein phosphatase 2 99.9 1.1E-22 2.4E-27 181.7 16.1 118 94-212 62-188 (365)
3 KOG0699|consensus 99.9 3.3E-23 7.2E-28 180.8 9.3 104 76-181 1-104 (542)
4 PTZ00224 protein phosphatase 2 99.9 4.6E-22 1E-26 178.6 15.3 126 76-212 1-127 (381)
5 PF00481 PP2C: Protein phospha 99.9 6.5E-22 1.4E-26 168.3 6.7 115 98-212 1-121 (254)
6 KOG0698|consensus 99.8 1.4E-20 3E-25 166.4 13.9 114 98-212 41-163 (330)
7 COG0631 PTC1 Serine/threonine 99.8 2.3E-18 4.9E-23 147.9 13.1 117 95-212 6-130 (262)
8 smart00332 PP2Cc Serine/threon 99.7 2.5E-16 5.5E-21 132.3 14.8 116 95-212 4-124 (255)
9 cd00143 PP2Cc Serine/threonine 99.7 2E-16 4.4E-21 132.3 14.0 114 98-212 2-121 (254)
10 PRK14559 putative protein seri 99.7 1.8E-16 3.9E-21 150.3 12.8 117 95-212 373-506 (645)
11 KOG0700|consensus 99.7 2E-16 4.4E-21 140.2 10.6 102 109-212 83-223 (390)
12 KOG1323|consensus 99.3 6.9E-12 1.5E-16 109.3 9.2 89 124-212 141-268 (493)
13 PF13672 PP2C_2: Protein phosp 99.2 8.6E-11 1.9E-15 96.7 9.9 107 102-212 3-119 (212)
14 smart00331 PP2C_SIG Sigma fact 98.7 1.1E-07 2.5E-12 76.9 10.0 93 109-212 15-109 (193)
15 KOG1379|consensus 98.6 3.7E-07 8.1E-12 79.4 9.7 93 109-212 89-191 (330)
16 KOG0618|consensus 98.2 3.1E-06 6.8E-11 82.6 7.0 162 26-211 469-638 (1081)
17 TIGR02865 spore_II_E stage II 96.3 0.042 9E-07 54.2 11.2 104 97-212 552-659 (764)
18 PF07228 SpoIIE: Stage II spor 96.1 0.077 1.7E-06 42.4 10.2 80 126-212 3-84 (193)
19 PF05785 CNF1: Rho-activating 48.5 17 0.00037 31.6 2.9 22 188-210 130-151 (281)
20 PF07629 DUF1590: Protein of u 42.5 12 0.00025 21.2 0.6 20 3-22 12-31 (32)
21 PRK14559 putative protein seri 36.7 65 0.0014 31.5 5.1 68 139-207 434-511 (645)
22 COG2208 RsbU Serine phosphatas 34.5 3.3E+02 0.0072 24.1 10.1 90 110-210 161-253 (367)
23 PRK10693 response regulator of 27.8 3.9E+02 0.0085 22.9 9.4 70 133-210 171-247 (303)
24 PLN02388 phosphopantetheine ad 26.4 29 0.00064 28.2 0.7 17 125-141 20-37 (177)
25 TIGR01518 g3p_cytidyltrns glyc 21.4 42 0.00092 25.0 0.7 15 128-142 2-17 (125)
26 PF12953 DUF3842: Domain of un 21.1 59 0.0013 25.2 1.4 12 130-141 2-13 (131)
27 TIGR00067 glut_race glutamate 20.4 47 0.001 28.3 0.9 23 130-152 1-24 (251)
No 1
>KOG0697|consensus
Probab=99.94 E-value=1.3e-26 Score=196.04 Aligned_cols=137 Identities=34% Similarity=0.650 Sum_probs=120.8
Q ss_pred cCcccCCCCcCCCCCccCCCCeEEEEEccccCCCCCCcceeeecCCCC-CCCceEEEEEcCCCChHHHHHHHHHHHHHHH
Q psy6963 76 MGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPD-DPGTAFFAVYDGHGGSKIAQFAGKHLHKYIV 154 (212)
Q Consensus 76 m~~~l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~-~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~ 154 (212)
||..|.+|++.|.......+.++||+.||||||-.|||+|.+...+.+ -.++.||||||||.|+++|++|+++|..++.
T Consensus 1 MGaFLdKPkteKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~ 80 (379)
T KOG0697|consen 1 MGAFLDKPKTEKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHII 80 (379)
T ss_pred CCccccCcccccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999998766643 3789999999999999999999999999998
Q ss_pred hhccCC-------hhhHHHHHHHHHHHHHHHHhcccCC--CCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 155 KTREFK-------EGNITEALKKGFMDLDAAMLDDDAL--KDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 155 ~~~~~~-------~~~i~~aL~~af~~~d~~l~~~~~~--~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
...++. .+.++.-|+..|+++|+.++..... ....+||||+++++.+.++|++||||.
T Consensus 81 sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDS 147 (379)
T KOG0697|consen 81 SSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDS 147 (379)
T ss_pred hhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcc
Confidence 764443 2478899999999999999876432 234599999999999999999999995
No 2
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.90 E-value=1.1e-22 Score=181.72 Aligned_cols=118 Identities=31% Similarity=0.495 Sum_probs=98.7
Q ss_pred CCCeEEEEEccccCCCCCCcceeeecCCCC--------CCCceEEEEEcCCCChHHHHHHHHHHHHHHHhhccCChhhHH
Q psy6963 94 NPLYKVGASCMQGWRITMEDAHSHILSLPD--------DPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFKEGNIT 165 (212)
Q Consensus 94 ~~~~~~g~~s~~G~R~~nED~~~~~~~~~~--------~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~~~~~i~ 165 (212)
.+.+.++..+++|.|++|||++++..++.. .....||||||||||+.+|+||+++|++.|.+...+. ..+.
T Consensus 62 ~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~-~~~~ 140 (365)
T PLN03145 62 IPVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFP-REIE 140 (365)
T ss_pred cCceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccc-hhHH
Confidence 456899999999999999999988765421 2346899999999999999999999999998754443 5678
Q ss_pred HHHHHHHHHHHHHHhcccCC-CCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 166 EALKKGFMDLDAAMLDDDAL-KDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 166 ~aL~~af~~~d~~l~~~~~~-~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
++|+++|..+|+.|.+.... ....+|||+++++|.++++|||||||.
T Consensus 141 ~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDS 188 (365)
T PLN03145 141 KVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDC 188 (365)
T ss_pred HHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCc
Confidence 99999999999999765432 233589999999999999999999995
No 3
>KOG0699|consensus
Probab=99.89 E-value=3.3e-23 Score=180.77 Aligned_cols=104 Identities=40% Similarity=0.792 Sum_probs=96.4
Q ss_pred cCcccCCCCcCCCCCccCCCCeEEEEEccccCCCCCCcceeeecCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHHh
Q psy6963 76 MGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVK 155 (212)
Q Consensus 76 m~~~l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~ 155 (212)
||++|++|.+.|.+.+....-+.||..+|||||..|||+|-++.+| +.+.++|+|||||||..+|+|++..|+.+|.+
T Consensus 1 MGAYLs~P~t~K~s~dg~g~lL~yg~s~MQGWRvsqEDAHNci~~l--d~~t~mF~VYDGHGG~EVa~yca~kLPdflK~ 78 (542)
T KOG0699|consen 1 MGAYLSKPITEKESEDGSGNLLSYGCSTMQGWRVSQEDAHNCIVDL--DTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKE 78 (542)
T ss_pred CcccccCCccccccccccCccchhchhhhhccccchhhhhcccccc--cCcceEEEEecCCCcHHHHHHHHHhhhHHHHh
Confidence 8999999999999988877779999999999999999999999988 78899999999999999999999999999998
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHhc
Q psy6963 156 TREFKEGNITEALKKGFMDLDAAMLD 181 (212)
Q Consensus 156 ~~~~~~~~i~~aL~~af~~~d~~l~~ 181 (212)
...+....+..+|+.||+..|..|..
T Consensus 79 ~k~yk~g~~~~aL~~AFl~fD~~l~~ 104 (542)
T KOG0699|consen 79 RKFYKAGDVAEALQKAFLDFDDFLRA 104 (542)
T ss_pred HHhhhcccHHHHHHHHHhchhhhhcC
Confidence 87777788999999999999887764
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.88 E-value=4.6e-22 Score=178.56 Aligned_cols=126 Identities=28% Similarity=0.450 Sum_probs=106.1
Q ss_pred cCcccCCCCcCCCCCccCCCCeEEEEEccccCCCCCCcceeeecCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHHh
Q psy6963 76 MGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVK 155 (212)
Q Consensus 76 m~~~l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~ 155 (212)
||..|++|...+.+.......+.+|..+++|+|++|||++++.. .....||||||||||..||+|++++|+..+.+
T Consensus 1 mg~~l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~ 76 (381)
T PTZ00224 1 MGIMLPKPVLSKLVDRAGNSIFRCASACVNGYRESMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEK 76 (381)
T ss_pred CCccCCCCccccccccCCCccEEEEEEeCCCCCCCCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHh
Confidence 89999999999998888889999999999999999999987653 23457999999999999999999999988765
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHhcccCCCCCCCccceeeeeEE-CCEEEEEEcCCC
Q psy6963 156 TREFKEGNITEALKKGFMDLDAAMLDDDALKDELAGTTAICILIK-DNILYCRNVRGL 212 (212)
Q Consensus 156 ~~~~~~~~i~~aL~~af~~~d~~l~~~~~~~~~~sGtTa~v~li~-~~~l~vANvGD~ 212 (212)
.... ...++|+++|..+|+++.... ..+|||+++++|. +.++|||||||.
T Consensus 77 ~~~~---~~~~~l~~a~~~~d~~i~~~~----~~~GsTatv~lI~~~~~l~vaNVGDS 127 (381)
T PTZ00224 77 EPEP---MTDERMEELCLEIDEEWMDSG----REGGSTGTFCVIMKDVHLQVGNVGDS 127 (381)
T ss_pred cccc---ccHHHHHHHHHHHHHHHHhcc----cCCCCeEEEEEEEECCEEEEEEcccc
Confidence 4221 224569999999999998643 2469999999886 679999999995
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.85 E-value=6.5e-22 Score=168.25 Aligned_cols=115 Identities=36% Similarity=0.622 Sum_probs=98.5
Q ss_pred EEEEEccccCCCCCCcceeeecCCC---CCCCceEEEEEcCCCChHHHHHHHHHHHHHHHhhccCChh-hHHHHHHHHHH
Q psy6963 98 KVGASCMQGWRITMEDAHSHILSLP---DDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFKEG-NITEALKKGFM 173 (212)
Q Consensus 98 ~~g~~s~~G~R~~nED~~~~~~~~~---~~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~~~~-~i~~aL~~af~ 173 (212)
.+|..+++|+|.+|||++++...+. ......||||||||||..+|+|++++|+..|......... .+.++|+.+|.
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~ 80 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFL 80 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceee
Confidence 4788999999999999999987663 4567899999999999999999999999888877654433 78999999999
Q ss_pred H-HHHHHhcccCC-CCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 174 D-LDAAMLDDDAL-KDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 174 ~-~d~~l~~~~~~-~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
+ +++.+...... ....+||||++++|.+++||||||||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDS 121 (254)
T PF00481_consen 81 AFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDS 121 (254)
T ss_dssp HHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-
T ss_pred ecccccccccccccccccccccccccccccceeEEEeeeee
Confidence 9 99998863211 456799999999999999999999995
No 6
>KOG0698|consensus
Probab=99.85 E-value=1.4e-20 Score=166.44 Aligned_cols=114 Identities=35% Similarity=0.605 Sum_probs=96.2
Q ss_pred EEEEEccccCCCCCCcceeeecCCC----CCC-CceEEEEEcCCCChHHHHHHHHHHHHHHHhhccCChh--hHHHHHHH
Q psy6963 98 KVGASCMQGWRITMEDAHSHILSLP----DDP-GTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFKEG--NITEALKK 170 (212)
Q Consensus 98 ~~g~~s~~G~R~~nED~~~~~~~~~----~~~-~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~~~~--~i~~aL~~ 170 (212)
..+.++.+|+|..|||++.....+. ... ...||||||||||+.||+|++++|+..+.++..+... .+++++++
T Consensus 41 ~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 41 LGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred ceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 3455689999999999999887643 223 6899999999999999999999999999998877653 59999999
Q ss_pred HHH-HHHHHHhcccCCCCCCCccceeeeeEECC-EEEEEEcCCC
Q psy6963 171 GFM-DLDAAMLDDDALKDELAGTTAICILIKDN-ILYCRNVRGL 212 (212)
Q Consensus 171 af~-~~d~~l~~~~~~~~~~sGtTa~v~li~~~-~l~vANvGD~ 212 (212)
+|+ ++|.++... ..+...+||||++++|.++ +||||||||.
T Consensus 121 ~F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDS 163 (330)
T KOG0698|consen 121 AFLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDS 163 (330)
T ss_pred HHHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCC
Confidence 999 699999875 2224678999999999855 9999999995
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.78 E-value=2.3e-18 Score=147.87 Aligned_cols=117 Identities=26% Similarity=0.271 Sum_probs=94.9
Q ss_pred CCeEEEEEccccC-CCCCCcceeeecCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHHhhccCC---h--hhHHHHH
Q psy6963 95 PLYKVGASCMQGW-RITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFK---E--GNITEAL 168 (212)
Q Consensus 95 ~~~~~g~~s~~G~-R~~nED~~~~~~~~~~~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~~---~--~~i~~aL 168 (212)
..+.++..++.|. |.+|||++.+........ ..||+|||||||++++++|++.+.+.|.+..... . +.+.+.|
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l 84 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELL 84 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Confidence 4556666666665 999999999987443334 6799999999999999999999999998864321 1 1168999
Q ss_pred HHHHHHHHHHHhcccC--CCCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 169 KKGFMDLDAAMLDDDA--LKDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 169 ~~af~~~d~~l~~~~~--~~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
++++..+|+.+..... .....||||++++++.++++|||||||.
T Consensus 85 ~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDS 130 (262)
T COG0631 85 KEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDS 130 (262)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCC
Confidence 9999999999988753 3456799999999999999999999995
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.71 E-value=2.5e-16 Score=132.30 Aligned_cols=116 Identities=38% Similarity=0.553 Sum_probs=96.4
Q ss_pred CCeEEEEEccccCCCCCCcceeeecCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHHhhccCCh---hhHHHHHHHH
Q psy6963 95 PLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFKE---GNITEALKKG 171 (212)
Q Consensus 95 ~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~~~---~~i~~aL~~a 171 (212)
..+.++..+.+|.|..|||++.+...+ .....+|+|||||||+.+|+++++.+...+.+...... ..+.+.|+++
T Consensus 4 ~~~~~~~~~~~~~r~~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (255)
T smart00332 4 LGLRYGLSSMQGVRKPMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKA 81 (255)
T ss_pred CceeEEEecCCCCCCCCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHH
Confidence 457778888899999999999886542 25688999999999999999999999998887643332 3588999999
Q ss_pred HHHHHHHHhcccCC--CCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 172 FMDLDAAMLDDDAL--KDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 172 f~~~d~~l~~~~~~--~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
+..+++.+...... ....+|||++++++..+++|++|+||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDs 124 (255)
T smart00332 82 FLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDS 124 (255)
T ss_pred HHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCc
Confidence 99999999875432 235689999999999999999999994
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.71 E-value=2e-16 Score=132.26 Aligned_cols=114 Identities=37% Similarity=0.510 Sum_probs=94.4
Q ss_pred EEEEEccccCCCCCCcceeeecCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHHhhccCC----hhhHHHHHHHHHH
Q psy6963 98 KVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFK----EGNITEALKKGFM 173 (212)
Q Consensus 98 ~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~~----~~~i~~aL~~af~ 173 (212)
.++..+..|.|..|||++.+...... .+..+|+|+|||||...++++++.+...+.+..... ...+.+.|+++|.
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 80 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFL 80 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 46778888999999999988653211 367899999999999999999999999988765433 4678899999999
Q ss_pred HHHHHHhcccC--CCCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 174 DLDAAMLDDDA--LKDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 174 ~~d~~l~~~~~--~~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
.+++.+..... .....+|||++++++.+++++++|+||.
T Consensus 81 ~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDs 121 (254)
T cd00143 81 RADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDS 121 (254)
T ss_pred HHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCc
Confidence 99999987543 2345689999999999999999999994
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.69 E-value=1.8e-16 Score=150.26 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=85.1
Q ss_pred CCeEEEEEccccC-CCCCCcceeeecCCC-----CC---CCceEEEEEcCCCChHH----HHHHHHHHHHHHHhhccCCh
Q psy6963 95 PLYKVGASCMQGW-RITMEDAHSHILSLP-----DD---PGTAFFAVYDGHGGSKI----AQFAGKHLHKYIVKTREFKE 161 (212)
Q Consensus 95 ~~~~~g~~s~~G~-R~~nED~~~~~~~~~-----~~---~~~~lfgVfDGHGG~~a----A~~a~~~l~~~l~~~~~~~~ 161 (212)
..+.++..+++|. |++|||++.+...+. .. ....||+|||||||+.+ |+++.+.|...|.+.....
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~- 451 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDE- 451 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccc-
Confidence 3578899999996 999999987654321 11 23579999999997765 4555566665555432211
Q ss_pred hhHHHHHHHHHHHHHHHHhcccC--C--CCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 162 GNITEALKKGFMDLDAAMLDDDA--L--KDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 162 ~~i~~aL~~af~~~d~~l~~~~~--~--~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
....+.|+++|..+|+.|.+... . ....||||+++++|.++++|+|||||+
T Consensus 452 ~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDS 506 (645)
T PRK14559 452 LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDS 506 (645)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCc
Confidence 12467899999999999976421 1 334699999999999999999999995
No 11
>KOG0700|consensus
Probab=99.68 E-value=2e-16 Score=140.16 Aligned_cols=102 Identities=31% Similarity=0.468 Sum_probs=82.3
Q ss_pred CCCCcceeeecCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHHhhccC-----------------------------
Q psy6963 109 ITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREF----------------------------- 159 (212)
Q Consensus 109 ~~nED~~~~~~~~~~~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~----------------------------- 159 (212)
.--||+..+.... ...+.|+||||||||..|++|++++|..++..++..
T Consensus 83 ~~~edrv~~~~s~--~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~ 160 (390)
T KOG0700|consen 83 KAEEDRVSVAVSE--ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLS 160 (390)
T ss_pred CcccCcceeeeec--cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhccc
Confidence 4467776665433 678999999999999999999999999988843210
Q ss_pred ---C-hhhHHHHHHHHHHHHHHHHhcccC------CCCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 160 ---K-EGNITEALKKGFMDLDAAMLDDDA------LKDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 160 ---~-~~~i~~aL~~af~~~d~~l~~~~~------~~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
. ...+.+||.+||.+++++|.+... ..-..+||||+|++|++..|||||+||.
T Consensus 161 ~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDS 223 (390)
T KOG0700|consen 161 SADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDS 223 (390)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcc
Confidence 1 356889999999999999976532 2335799999999999999999999995
No 12
>KOG1323|consensus
Probab=99.32 E-value=6.9e-12 Score=109.33 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=73.3
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHHHHHHHhhcc----------------C-----------------------ChhhH
Q psy6963 124 DPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTRE----------------F-----------------------KEGNI 164 (212)
Q Consensus 124 ~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~----------------~-----------------------~~~~i 164 (212)
..++++|.+||||.|+.+|-.+++.|+.++..++. + .+.-+
T Consensus 141 ~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LV 220 (493)
T KOG1323|consen 141 RADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLV 220 (493)
T ss_pred CCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhh
Confidence 35789999999999999999999988888766431 0 01236
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 165 TEALKKGFMDLDAAMLDDDALKDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 165 ~~aL~~af~~~d~~l~~~~~~~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
..||+.||..+|++|....+......||||++++.--++||+||.||.
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDs 268 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDS 268 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCc
Confidence 789999999999999876555556679999999999999999999994
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.21 E-value=8.6e-11 Score=96.69 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=61.6
Q ss_pred EccccCCCCCCcceeeecCCCCCCCceEEEEEcCCCChHH----HHHHHHHHHHHHHhhccCChhh-HHHHHHHHHHHHH
Q psy6963 102 SCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKI----AQFAGKHLHKYIVKTREFKEGN-ITEALKKGFMDLD 176 (212)
Q Consensus 102 ~s~~G~R~~nED~~~~~~~~~~~~~~~lfgVfDGHGG~~a----A~~a~~~l~~~l~~~~~~~~~~-i~~aL~~af~~~d 176 (212)
.+++|.|+.|||++.+.. ..+..+++|+||+||... |..+.+.+...+.......... ..+.++.+..++.
T Consensus 3 ~sh~~~~~~nqD~~~~~~----~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRT----DDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEIL 78 (212)
T ss_dssp ----TTSSS--EEEEEE-----TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeee----CCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 567889999999998553 345577799999995554 5555555655555544432222 2333333333333
Q ss_pred HHH-----hcccCCCCCCCccceeeeeEECCEEEEEEcCCC
Q psy6963 177 AAM-----LDDDALKDELAGTTAICILIKDNILYCRNVRGL 212 (212)
Q Consensus 177 ~~l-----~~~~~~~~~~sGtTa~v~li~~~~l~vANvGD~ 212 (212)
..+ ...........+||++++++.+++++++|+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~ 119 (212)
T PF13672_consen 79 SIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDS 119 (212)
T ss_dssp HHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-
T ss_pred HHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCC
Confidence 222 111123345579999999999999999999994
No 14
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=98.72 E-value=1.1e-07 Score=76.93 Aligned_cols=93 Identities=15% Similarity=0.028 Sum_probs=66.9
Q ss_pred CCCCcceeeecCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcccCCCCC
Q psy6963 109 ITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFKEGNITEALKKGFMDLDAAMLDDDALKDE 188 (212)
Q Consensus 109 ~~nED~~~~~~~~~~~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~~~~~i~~aL~~af~~~d~~l~~~~~~~~~ 188 (212)
...-|.+.++.. +++..+++|+||||+...|.+++..+...|.+..... . .+.+.+..+|+.+... ...
T Consensus 15 ~~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~-~----~~~~~l~~~n~~l~~~---~~~ 83 (193)
T smart00331 15 QVGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG-I----SLSQILERLNRAIYEN---GED 83 (193)
T ss_pred hcCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC-C----CHHHHHHHHHHHHHhc---CCC
Confidence 446677766532 3447899999999988888888888888877654322 1 2445566677777654 234
Q ss_pred CCccceeeeeE--ECCEEEEEEcCCC
Q psy6963 189 LAGTTAICILI--KDNILYCRNVRGL 212 (212)
Q Consensus 189 ~sGtTa~v~li--~~~~l~vANvGD~ 212 (212)
.+|+|++++++ ..++++++|+||.
T Consensus 84 ~~~~T~~~~~id~~~~~l~~~~~Gd~ 109 (193)
T smart00331 84 GMFATLFLALYDFAGGTLSYANAGHS 109 (193)
T ss_pred CcEEEEEEEEEECCCCEEEEEeCCCC
Confidence 57999999998 5789999999994
No 15
>KOG1379|consensus
Probab=98.58 E-value=3.7e-07 Score=79.43 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=66.5
Q ss_pred CCCCcceeeecCCCCCCCceEEEEEcCCCC-----hHHHHHHHHHH---HHHHHhhccCChhhHHHHHHHHHHHHHHHHh
Q psy6963 109 ITMEDAHSHILSLPDDPGTAFFAVYDGHGG-----SKIAQFAGKHL---HKYIVKTREFKEGNITEALKKGFMDLDAAML 180 (212)
Q Consensus 109 ~~nED~~~~~~~~~~~~~~~lfgVfDGHGG-----~~aA~~a~~~l---~~~l~~~~~~~~~~i~~aL~~af~~~d~~l~ 180 (212)
..-||++++.. .....+.||+||.|| -..+.|.++.+ .+.+. ...+....+...|.+||.++-++
T Consensus 89 ~~GEDa~Fvss----~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~-~~~~~~~~P~~lL~~ay~~l~~~-- 161 (330)
T KOG1379|consen 89 KGGEDAWFVSS----NPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQ-NSDFNPSDPVNLLEKAYAELKSQ-- 161 (330)
T ss_pred CCCCcceeecc----CcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhc-ccccCCCChHHHHHHHHHHHhhc--
Confidence 45789998863 356789999999994 45666655433 22222 23344457888999998766543
Q ss_pred cccCCCCCCCccceeeeeEE--CCEEEEEEcCCC
Q psy6963 181 DDDALKDELAGTTAICILIK--DNILYCRNVRGL 212 (212)
Q Consensus 181 ~~~~~~~~~sGtTa~v~li~--~~~l~vANvGD~ 212 (212)
......+|||+++.+. +.+||+||+||.
T Consensus 162 ----~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDS 191 (330)
T KOG1379|consen 162 ----KVPIVGSSTACILALDRENGKLHTANLGDS 191 (330)
T ss_pred ----CCCCCCcceeeeeeeecCCCeEEEeeccCc
Confidence 3345578999999998 899999999995
No 16
>KOG0618|consensus
Probab=98.20 E-value=3.1e-06 Score=82.59 Aligned_cols=162 Identities=16% Similarity=0.229 Sum_probs=110.0
Q ss_pred CCCCCCCCCCcccCCCCCCccceeccchhhhhccccCCCCCCCCCccccccCcccCCCCcCCCCCccCCCCeEEEEEccc
Q psy6963 26 TAEHFPDNNEGEEKKYGGGRQEEEKKEEEEEDKEKCSGEEDSHPSGFSFAMGQTLTEPVTNKDSSSVQNPLYKVGASCMQ 105 (212)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~p~~~~~~~~~~~~~~~~g~~s~~ 105 (212)
.|++.+| .+.++.+++||.|+..+-.. ..-| +....|+.++. .+++.+.. .....||++.+.
T Consensus 469 l~~~~p~-p~LkyLdlSGN~~l~~d~~~----l~~l---------~~l~~~~i~~~--~~~d~~~n--~~~~t~Gv~~~~ 530 (1081)
T KOG0618|consen 469 LPEALPS-PNLKYLDLSGNTRLVFDHKT----LKVL---------KSLSQMDITLN--NTPDGNVN--AFLWTYGVAGVS 530 (1081)
T ss_pred hhhhCCC-cccceeeccCCcccccchhh----hHHh---------hhhhheecccC--CCCccccc--eeheeeccchhc
Confidence 4556666 45555599999975442111 1111 12234555554 12222211 234679999999
Q ss_pred cCCCCCCcceeeecCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcccCC
Q psy6963 106 GWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFKEGNITEALKKGFMDLDAAMLDDDAL 185 (212)
Q Consensus 106 G~R~~nED~~~~~~~~~~~~~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~~~~~i~~aL~~af~~~d~~l~~~~~~ 185 (212)
|.|..+--+...+.+|. ......||+|||-+-.....+++..+..++.++......+ .+-|+.+|+.+++++-...+
T Consensus 531 gqrnk~c~~~~~v~nf~-~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~e-t~~mr~~fl~~~rklg~~g~- 607 (1081)
T KOG0618|consen 531 GQRNKVCSRAVWVENFF-LNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNE-TEQMRNTFLRLNRKLGEEGQ- 607 (1081)
T ss_pred ccccchhhhhhhhhhcc-cCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHhhhhhhhhc-
Confidence 99998887777777764 4566899999999999999999999999999887655323 33499999999999965432
Q ss_pred CCCCCccceeeeeEEC--------CEEEEEEcCC
Q psy6963 186 KDELAGTTAICILIKD--------NILYCRNVRG 211 (212)
Q Consensus 186 ~~~~sGtTa~v~li~~--------~~l~vANvGD 211 (212)
.-|..++.+.|.. .++++||||+
T Consensus 608 ---~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~ 638 (1081)
T KOG0618|consen 608 ---VLGGSVVLCQIVEDSLSPASSKTLFAANVGT 638 (1081)
T ss_pred ---cccchhhheeecccccCcccchhhhHhhhcc
Confidence 2466666666643 3688999986
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=96.30 E-value=0.042 Score=54.19 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=64.2
Q ss_pred eEEEEEc-cccCCCCCCcceeeecCCCCCCCceEEEEEcCCC-ChHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHH
Q psy6963 97 YKVGASC-MQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHG-GSKIAQFAGKHLHKYIVKTREFKEGNITEALKKGFMD 174 (212)
Q Consensus 97 ~~~g~~s-~~G~R~~nED~~~~~~~~~~~~~~~lfgVfDGHG-G~~aA~~a~~~l~~~l~~~~~~~~~~i~~aL~~af~~ 174 (212)
+.+|++. .++.+..+.|.+.+... +++..+++|.||+| |..|| .++......+.+..... -+ ...++..
T Consensus 552 ~~~g~a~~~k~g~~vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa-~~S~~~~~ll~~~~~~g-~~----~~~ai~~ 622 (764)
T TIGR02865 552 VSTGVARAAKDGELVSGDSYSFGKL---SAGKYAVAISDGMGSGPEAA-QESSACVRLLEKFLESG-FD----REVAIKT 622 (764)
T ss_pred ehhhHHHhcCCCCcccCceEEEEEE---CCCEEEEEEEcccCCCHHHH-HHHHHHHHHHHHHHHcC-CC----HHHHHHH
Confidence 3444432 33446789999877642 34557899999999 55555 44444444443322111 11 2456667
Q ss_pred HHHHHhcccCCCCCCCccceeeeeEE--CCEEEEEEcCCC
Q psy6963 175 LDAAMLDDDALKDELAGTTAICILIK--DNILYCRNVRGL 212 (212)
Q Consensus 175 ~d~~l~~~~~~~~~~sGtTa~v~li~--~~~l~vANvGD~ 212 (212)
+|..+... ....+++|+.+++|+ .+++.++|+|+.
T Consensus 623 lN~~L~~~---~~~~~faTl~l~~IDl~~g~~~~~~aG~~ 659 (764)
T TIGR02865 623 VNSILSLR---STDEKFSTLDLSVIDLYTGQAEFVKVGAV 659 (764)
T ss_pred HHHHHHhC---CCCCeEEEEEEEEEECCCCeEEEEecCCC
Confidence 77776543 123478999999885 678999999983
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=96.13 E-value=0.077 Score=42.36 Aligned_cols=80 Identities=19% Similarity=0.073 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcccCCCCCCCccceeeeeEE--CCE
Q psy6963 126 GTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFKEGNITEALKKGFMDLDAAMLDDDALKDELAGTTAICILIK--DNI 203 (212)
Q Consensus 126 ~~~lfgVfDGHGG~~aA~~a~~~l~~~l~~~~~~~~~~i~~aL~~af~~~d~~l~~~~~~~~~~sGtTa~v~li~--~~~ 203 (212)
+..++.|.|+.|-...|.+++-.+...+....... .. ..+.+..+|+.+...... ...++|++++++. .++
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~-~~----p~~~l~~ln~~l~~~~~~--~~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEG-LD----PEELLEALNRRLYRDLKG--DNRYATACYAIIDPETGT 75 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT-TS----HHHHHHHHHHHHHHHTTT--TSTTEEEEEEEEETTTTE
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcC-CC----HHHHHHHHHHHHHHHhhh--ccccceEEEEEecccceE
Confidence 45789999999933333444444444444333221 22 344444555665333211 1368888888876 578
Q ss_pred EEEEEcCCC
Q psy6963 204 LYCRNVRGL 212 (212)
Q Consensus 204 l~vANvGD~ 212 (212)
++++|+|+.
T Consensus 76 l~~~~aG~~ 84 (193)
T PF07228_consen 76 LTYANAGHP 84 (193)
T ss_dssp EEEEEESSS
T ss_pred EEEeCCCCC
Confidence 999999973
No 19
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=48.52 E-value=17 Score=31.65 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=18.1
Q ss_pred CCCccceeeeeEECCEEEEEEcC
Q psy6963 188 ELAGTTAICILIKDNILYCRNVR 210 (212)
Q Consensus 188 ~~sGtTa~v~li~~~~l~vANvG 210 (212)
..||||.+++ ++++.+|.-|+|
T Consensus 130 ~LSGCT~i~A-~K~~~~y~~HtG 151 (281)
T PF05785_consen 130 ALSGCTMIYA-RKDNYFYAYHTG 151 (281)
T ss_dssp -BSS-EEEEE-EETTEEEEEEEE
T ss_pred ccCCCEEEEE-EcCCeEEEEEcC
Confidence 5699998887 799999999998
No 20
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=42.50 E-value=12 Score=21.21 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.7
Q ss_pred CCceeeecCCcccccCCCCC
Q psy6963 3 VPWNIIFISPVLLRLPLGSS 22 (212)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (212)
.+-|-.||+|-..|.+++-+
T Consensus 12 islna~fptppaa~a~fsr~ 31 (32)
T PF07629_consen 12 ISLNARFPTPPAARAGFSRV 31 (32)
T ss_pred ceeccccCCChhhhhccccc
Confidence 35788999999999988765
No 21
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=36.75 E-value=65 Score=31.49 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHH---HHhcccCCCC-------CCCccceeeeeEECCEEEEE
Q psy6963 139 SKIAQFAGKHLHKYIVKTREFKEGNITEALKKGFMDLDA---AMLDDDALKD-------ELAGTTAICILIKDNILYCR 207 (212)
Q Consensus 139 ~~aA~~a~~~l~~~l~~~~~~~~~~i~~aL~~af~~~d~---~l~~~~~~~~-------~~sGtTa~v~li~~~~l~vA 207 (212)
..|++.+.+.+...+..... ..+.+++++..+-..+.+ +-........ ...+..+.++-+.+.++|..
T Consensus 434 ~lAv~~L~~~~~~~~~~~~~-~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli 511 (645)
T PRK14559 434 ALAVETLQQYFQQHWQDELP-DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRV 511 (645)
T ss_pred HHHHHHHHHHHHhhhccccc-HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEE
Confidence 56677777777665544322 235567777666655533 2221111111 11356677777788888854
No 22
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=34.47 E-value=3.3e+02 Score=24.13 Aligned_cols=90 Identities=12% Similarity=-0.074 Sum_probs=45.4
Q ss_pred CCCcceeeecCCCCCCCceEEEEEcCCC-ChHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcccCCCCC
Q psy6963 110 TMEDAHSHILSLPDDPGTAFFAVYDGHG-GSKIAQFAGKHLHKYIVKTREFKEGNITEALKKGFMDLDAAMLDDDALKDE 188 (212)
Q Consensus 110 ~nED~~~~~~~~~~~~~~~lfgVfDGHG-G~~aA~~a~~~l~~~l~~~~~~~~~~i~~aL~~af~~~d~~l~~~~~~~~~ 188 (212)
-.=|.|-++.. +.....++|.|..| |-.||-. .......+........-.+.++ +..+|+-+......
T Consensus 161 vGGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~~~p~~~----l~~~n~~~~~~~~~--- 229 (367)
T COG2208 161 VGGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALL-MLMPKLALRLLLESGPLDPADV----LETLNRVLKQNLEE--- 229 (367)
T ss_pred cCCceEEEEEE---CCcEEEEEEEeccCCCHHHHHH-HHHHHHHHHHhhhcccCCHHHH----HHHHHHHHHhcccC---
Confidence 34455544432 23567899999998 7777766 3222222222211111233333 33444444433211
Q ss_pred CCccceeeeeEE--CCEEEEEEcC
Q psy6963 189 LAGTTAICILIK--DNILYCRNVR 210 (212)
Q Consensus 189 ~sGtTa~v~li~--~~~l~vANvG 210 (212)
.+=+|....+++ .+.+..+|+|
T Consensus 230 ~~f~T~~~~~~d~~~~~l~y~~aG 253 (367)
T COG2208 230 DMFVTLFLGVYDLDSGELTYSNAG 253 (367)
T ss_pred CcEEEEEEEEEeccCCEEEEeeCC
Confidence 145555555554 6778888887
No 23
>PRK10693 response regulator of RpoS; Provisional
Probab=27.78 E-value=3.9e+02 Score=22.94 Aligned_cols=70 Identities=6% Similarity=-0.036 Sum_probs=36.9
Q ss_pred EcCCC--ChHHHHHHHHHHHHHHHhhcc---CChhhHHHHHHHHHHHHHHHHhcccCCCCCCCccceeeeeEE--CCEEE
Q psy6963 133 YDGHG--GSKIAQFAGKHLHKYIVKTRE---FKEGNITEALKKGFMDLDAAMLDDDALKDELAGTTAICILIK--DNILY 205 (212)
Q Consensus 133 fDGHG--G~~aA~~a~~~l~~~l~~~~~---~~~~~i~~aL~~af~~~d~~l~~~~~~~~~~sGtTa~v~li~--~~~l~ 205 (212)
+-||| |..||-.+...+...+..... .....+ ......+|+.+...... . --|++++++. .++|.
T Consensus 171 vsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p----~~~l~~lN~~l~~~~~~-~---~~t~~~~~~d~~~~~l~ 242 (303)
T PRK10693 171 VTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPEL----GALLKQVNHLLRQANLP-G---QFPLLVGYYHRELKNLI 242 (303)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCH----HHHHHHHHHHHHhcCCC-c---eeeEEEEEEEcCCCeEE
Confidence 44887 445555444444445444211 100122 34455677777654211 1 1477777775 45788
Q ss_pred EEEcC
Q psy6963 206 CRNVR 210 (212)
Q Consensus 206 vANvG 210 (212)
.+|.|
T Consensus 243 ~~~AG 247 (303)
T PRK10693 243 LVSAG 247 (303)
T ss_pred EEeCC
Confidence 88887
No 24
>PLN02388 phosphopantetheine adenylyltransferase
Probab=26.35 E-value=29 Score=28.15 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=13.6
Q ss_pred CCceEEEEEcC-CCChHH
Q psy6963 125 PGTAFFAVYDG-HGGSKI 141 (212)
Q Consensus 125 ~~~~lfgVfDG-HGG~~a 141 (212)
....+.|-||| |-||+.
T Consensus 20 ~~Vv~gGtFDgLH~GHq~ 37 (177)
T PLN02388 20 GAVVLGGTFDRLHDGHRL 37 (177)
T ss_pred CeEEEEecCCccCHHHHH
Confidence 45678999999 779865
No 25
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=21.42 E-value=42 Score=25.00 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=11.3
Q ss_pred eEEEEEcC-CCChHHH
Q psy6963 128 AFFAVYDG-HGGSKIA 142 (212)
Q Consensus 128 ~lfgVfDG-HGG~~aA 142 (212)
...|.||| |-||..-
T Consensus 2 ~~~G~FDg~H~GH~~~ 17 (125)
T TIGR01518 2 LTYGTFDLLHWGHINL 17 (125)
T ss_pred EEcceeCCCCHHHHHH
Confidence 35799999 6698664
No 26
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=21.08 E-value=59 Score=25.16 Aligned_cols=12 Identities=50% Similarity=0.711 Sum_probs=9.0
Q ss_pred EEEEcCCCChHH
Q psy6963 130 FAVYDGHGGSKI 141 (212)
Q Consensus 130 fgVfDGHGG~~a 141 (212)
.+|.||+||.--
T Consensus 2 I~VIDGQGGGiG 13 (131)
T PF12953_consen 2 IAVIDGQGGGIG 13 (131)
T ss_pred EEEEeCCCChhH
Confidence 479999996543
No 27
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=20.37 E-value=47 Score=28.25 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEEc-CCCChHHHHHHHHHHHHH
Q psy6963 130 FAVYD-GHGGSKIAQFAGKHLHKY 152 (212)
Q Consensus 130 fgVfD-GHGG~~aA~~a~~~l~~~ 152 (212)
.|||| |.||-.+.+.+.+.+++.
T Consensus 1 IgvfDSGiGGltv~~~l~~~~p~~ 24 (251)
T TIGR00067 1 IGVFDSGVGGLSVLKEIRKQLPKE 24 (251)
T ss_pred CEEEeCCccHHHHHHHHHHHCCCC
Confidence 37999 689999999999888644
Done!