RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6963
(212 letters)
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 177 bits (450), Expect = 2e-55
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 18/151 (11%)
Query: 75 AMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYD 134
++G L+EP+T KDSS N G+S MQGWRI+ EDAH+ IL+ D +FFAVYD
Sbjct: 1 SLGAYLSEPLTTKDSSDESNEFLASGSSSMQGWRISQEDAHNCILNFDDQ--CSFFAVYD 58
Query: 135 GHGGSKIAQFAGKHLHKYIVKTREFKEGNITEALKKGFMDLDAAMLDDDALKD------- 187
GHGG+++AQ+ HL ++ + +ALK+ F+ DA +L + +++
Sbjct: 59 GHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDATLLQEKVIEELKVLSGD 118
Query: 188 ---------ELAGTTAICILIKDNILYCRNV 209
+ +G TA+ L+ LY N
Sbjct: 119 SAGSDAEPGKDSGCTAVVALLHGKDLYVANA 149
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 164 bits (418), Expect = 2e-50
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 15/150 (10%)
Query: 75 AMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLP-DDPGTAFFAVY 133
++G L +P T K ++ + G S MQGWR+ MEDAH+ ++ +P +FFAVY
Sbjct: 2 SLGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVY 61
Query: 134 DGHGGSKIAQFAGKHLHKYIVKTREFKEG------------NITEALKKGFMDLDAAMLD 181
DGH GS++A + HL ++I +F+ N+ ++ GF+ +D M +
Sbjct: 62 DGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRN 121
Query: 182 DDALKDEL--AGTTAICILIKDNILYCRNV 209
L++ + +G+TA+ ++I +Y N
Sbjct: 122 FSDLRNGMDRSGSTAVGVMISPKHIYFINC 151
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 165 bits (419), Expect = 6e-50
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 76 MGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDD-PGTAFFAVYD 134
MG L +P K ++ Q + G S MQGWR+ MEDAH+ ++ LP +FFAVYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 135 GHGGSKIAQFAGKHLHKYIVKTREFKEG-------NITEALKKGFMDLDAAM--LDDDAL 185
GH GS++A++ +HL +I ++FK N+ ++ GF+++D M + +
Sbjct: 61 GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKH 120
Query: 186 KDELAGTTAICILIKDNILYCRNV 209
+ +G+TA+ +LI Y N
Sbjct: 121 GADRSGSTAVGVLISPQHTYFINC 144
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 156 bits (396), Expect = 5e-47
Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 21/149 (14%)
Query: 82 EPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSL-PDDPGTAFFAVYDGHGGSK 140
P + P + G R ED + L P AFF V+DG G
Sbjct: 7 PPTIHVPLPPTSYPAFDAAIFTDIGGRKHQEDRFTLCPQLVPGRDDCAFFGVFDGTVGDF 66
Query: 141 IAQFAGKHLHKYIVKTREFKEGN-------------------ITEALKKGFMDLDAAMLD 181
++ + ++ + ++E + +A+ + + D ++
Sbjct: 67 ASENVKDLVVPQLISSPAWQEVTEMLRSDVPATEVDEKLPQLLDQAVDDMYKNADNELVK 126
Query: 182 D-DALKDELAGTTAICILIKDNILYCRNV 209
+ L + A +T++ ++ + ++
Sbjct: 127 MCEQLNKDYASSTSVTAVLAKGFVAVGHL 155
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 135 bits (342), Expect = 2e-38
Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 46/179 (25%)
Query: 75 AMGQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSH-----ILSLPDDPGTAF 129
++ Q+ +P D VG++ + + + SH L +
Sbjct: 7 SLLQSEQQPSWTDDLPLCHL--SGVGSASNRSYSADGKGTESHPPEDSWLKFRSENNCFL 64
Query: 130 FAVYDGHGGSKIAQFAGKHLHKYIVK---TREFKEGNITEALKKGFMDLDAAML--DDDA 184
+ V++G+ G+++ F + L ++ E E ++ L + F ++ + L DDA
Sbjct: 65 YGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDA 124
Query: 185 LKDEL----------------------------------AGTTAICILIKDNILYCRNV 209
L ++ G A+ ++ +N LY NV
Sbjct: 125 LAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANV 183
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 132 bits (333), Expect = 4e-38
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 91 SVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLH 150
S++ L VG + G R ED +FAVYDGHGG A F H+
Sbjct: 2 SLKISLENVGCASQIGKRKENEDRFD---FAQLTDEVLYFAVYDGHGGPAAADFCHTHME 58
Query: 151 KYIVKTREFKEGNITEALKKGFMDLDAAMLDDDALKDEL----AGTTAICILIKDNI-LY 205
K I+ E N+ L F+++D A L + +GTTA L++D I L
Sbjct: 59 KCIMDLLPK-EKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIELV 117
Query: 206 CRNV 209
+V
Sbjct: 118 VASV 121
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 132 bits (333), Expect = 9e-38
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 26/139 (18%)
Query: 94 NPLYKVGASCMQGWRITMEDAHSHILSLPDDPG-------------TAFFAVYDGHGGSK 140
+ G + + G R MEDA S I FF VYDGHGGS+
Sbjct: 6 KSVPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQ 65
Query: 141 IAQFAGKHLHKYIVKTREFKEG----------NITEALKKGFMDLDAAMLDDDALKDELA 190
+A + + +H + + ++ +AL F+ +D+ + E
Sbjct: 66 VANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIESV---APETV 122
Query: 191 GTTAICILIKDNILYCRNV 209
G+T++ ++ + ++ N
Sbjct: 123 GSTSVVAVVFPSHIFVANC 141
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 131 bits (332), Expect = 6e-37
Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 17/175 (9%)
Query: 40 KYGGGRQEEEKKEEEEEDKEKCSGEEDSHPSGFSFAMGQTLTEPVTNKDSSSVQNPLYKV 99
Y G R + ++ E+ + ++ E G + L V
Sbjct: 73 LYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE--------NLYFQAGKPIPKISLENV 124
Query: 100 GASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREF 159
G + G R ED +FAVYDGHGG A F H+ K I+
Sbjct: 125 GCASQIGKRKENEDRFDF---AQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPK 181
Query: 160 KEGNITEALKKGFMDLDAAMLDDDALKDEL----AGTTAICILIKDNI-LYCRNV 209
E N+ L F+++D A L + +GTTA L++D I L +V
Sbjct: 182 -EKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASV 235
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 125 bits (315), Expect = 6e-35
Identities = 32/169 (18%), Positives = 53/169 (31%), Gaps = 44/169 (26%)
Query: 85 TNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSL------------------PDDPG 126
S + + G +QG R MEDA +
Sbjct: 2 AMGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLT 61
Query: 127 TAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREF-------------KEGNITEALKKGFM 173
FF VYDGHGG K+A + LH + + E ++ + F+
Sbjct: 62 GHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFL 121
Query: 174 DLDAAMLDD-------------DALKDELAGTTAICILIKDNILYCRNV 209
+D + +A+ E G+TA+ L+ + + N
Sbjct: 122 TVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNC 170
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 119 bits (299), Expect = 2e-32
Identities = 25/95 (26%), Positives = 38/95 (40%)
Query: 85 TNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQF 144
+ K +V A+ M G R T EDA P AV+DGH G +Q+
Sbjct: 1 SLKKVITVNEWYTTTVAATMLGRRPTDEDAILVSAPATSRPNVRIKAVFDGHAGEATSQY 60
Query: 145 AGKHLHKYIVKTREFKEGNITEALKKGFMDLDAAM 179
KH K++ K EF + +A ++ +
Sbjct: 61 CAKHAAKHLGKLSEFTFAEVKKACLSLDAEIIRKL 95
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 106 bits (265), Expect = 2e-27
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 88 DSSSVQNPLYKVGASCMQGWRITMEDAHSHILS-----LPDDPGTAFFAVYDGHGGSKIA 142
++ ++ + R T E HS + L P T A++DG G A
Sbjct: 4 RHLYIEEGRTVCASATSRNRRPTSESPHSDDVVVVEGMLRGRPETRVHAMFDGFQGRHSA 63
Query: 143 QFAGKHLHKYIVKTREFKEGNITEALKKGFMDLDAAMLDDDALKDELAGTTAIC 196
+ +++ Y+ R+ E E + + F +D + + L +
Sbjct: 64 MWLAQNVMNYLNDLRDVNE----EEITRQFERMDGDLRAAN-LPGGSSALIIFV 112
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 95.8 bits (238), Expect = 9e-24
Identities = 22/170 (12%), Positives = 47/170 (27%), Gaps = 47/170 (27%)
Query: 82 EPVTNKDSS--SVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGS 139
+ + N +Y + D D T+ +A+ GH G
Sbjct: 8 DLKVCNQTGVGEAINQIY--KDDGRRCEGYESRDKKCL---CISDNNTSLYAILSGHNGV 62
Query: 140 KIAQFAGKHLHKYIVK---TREFKEGNITEALKKGFMDLDAAMLDDDALKDEL------- 189
+A+ A + + ++ + + E +++ FM ++ D
Sbjct: 63 TVAENALQEMAAELLLGQLNVCNTDEAVKELIRQSFMSVEKGYFDSINPHVATKTAIQLH 122
Query: 190 ------------------------------AGTTAICILIKDNILYCRNV 209
G++A+ LI + LY N+
Sbjct: 123 LSADGMNQYEISQQFENVLQKLDSLNNALSVGSSAVLALIHRSHLYLGNI 172
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 68.7 bits (167), Expect = 8e-14
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 6/86 (6%)
Query: 102 SCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKY----IVKTR 157
S +ED S L V+DGH G +Q + L Y ++
Sbjct: 43 SNRLPANAPIEDRRSATTCL--QTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHE 100
Query: 158 EFKEGNITEALKKGFMDLDAAMLDDD 183
E + + + +
Sbjct: 101 TLLEIENAVESGRALLPILQWHKHPN 126
Score = 46.3 bits (109), Expect = 3e-06
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 17/138 (12%)
Query: 89 SSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKH 148
S +V L+ A + +E ++ P + + + + ++
Sbjct: 81 SQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNG 140
Query: 149 LHKYIVK-----TREFKEGNITEALKKGFMDLDAAMLDDDALKDE------------LAG 191
L Y + T E + ++ EAL F LD + + + D +G
Sbjct: 141 LRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSG 200
Query: 192 TTAICILIKDNILYCRNV 209
TA + L+ N
Sbjct: 201 ATACVAHVDGVDLHVANT 218
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 38.0 bits (89), Expect = 9e-04
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 112 EDAHSHILSLPDDPGTAFFAVYDGHGGSK---IA-QFAGKHLHKYIVKTREFKEGNITEA 167
+DA D+ FF V DG GG A + A H+ +Y+ E + +
Sbjct: 17 QDAF-----YIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTL 71
Query: 168 LKKGFMDLDAAMLDDDALKDELA--GTTAICILIKD--NILYCRNV 209
L++ F+ + A+++ A GTTA+ IL+ + + +C +V
Sbjct: 72 LRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHV 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.018
Identities = 24/133 (18%), Positives = 35/133 (26%), Gaps = 38/133 (28%)
Query: 64 EEDSHPSGFSFAMGQTLTEPV----TNKDSSSVQNPLYKVGASCMQ------GWRITMED 113
+D + SF + + PV D + + W T +
Sbjct: 440 NKDLVKNNVSFN-AKDIQIPVYDTFDGSDLRVLSGSI--SERIVDCIIRLPVKWETTTQF 496
Query: 114 AHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVKTREFKEGNITEALKKGFM 173
+HIL PG G S + T K+G + G
Sbjct: 497 KATHILDF--GPG----------GASGLGVL-----------THRNKDGTGVRVIVAG-- 531
Query: 174 DLDAAMLDDDALK 186
LD DD K
Sbjct: 532 TLDINPDDDYGFK 544
Score = 31.6 bits (71), Expect = 0.19
Identities = 40/219 (18%), Positives = 64/219 (29%), Gaps = 78/219 (35%)
Query: 15 LRLPL----GS-----SLPNTAEHFPDNNEGEEKKYGGGRQEEEKKEEEEEDKEKCSGEE 65
R PL GS +P TA F + QE+ K E + + +E
Sbjct: 6 TR-PLTLSHGSLEHVLLVP-TASFFI----ASQ------LQEQFNKILPEPTEGFAADDE 53
Query: 66 DSHP----SGF-SFAMGQTLTEPVTNKDSSSV-QNPLYKVGASCMQGWRITMEDAHSHIL 119
+ P F + +L EP V L + ++G D H+
Sbjct: 54 PTTPAELVGKFLGYVS--SLVEPSKVGQFDQVLNLCLTEFENCYLEG-----NDIHALAA 106
Query: 120 SLPDDPGT-----------------------------AFF-AVYDGHGGSKI-AQFAGK- 147
L + T A F AV +G+ +++ A F G+
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN--AQLVAIFGGQG 164
Query: 148 HLHKYIVKTREFKE----GNITEALKKGFMDLDAAMLDD 182
+ Y F+E L + A L +
Sbjct: 165 NTDDY------FEELRDLYQTYHVLVGDLIKFSAETLSE 197
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET:
HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4
a.3.1.4
Length = 183
Score = 32.2 bits (73), Expect = 0.076
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 136 HG----GSKIAQF---AGKHLHKYIVKT-REFKEGNITEALKKGFMDLDAAMLDDDALKD 187
HG + AG+H Y+ + +K+ + + + +M A LD +
Sbjct: 20 HGMTGRDTLYPIVPRLAGQH-KSYMEAQLKAYKDHSRADQNGEIYMWPVAQALDSAKITA 78
Query: 188 ELA 190
Sbjct: 79 LAD 81
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 28.3 bits (62), Expect = 1.2
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 25 NTAEHFPDNNEGEEKKYGGGRQEEEKKEEEEEDKEKCSGEED 66
E + E EE+ E+E ++++++D E EE+
Sbjct: 31 QHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.8 bits (62), Expect = 2.1
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 32 DNNEGEEKKYGGGRQEEEKKEEEEEDKEKCSGEEDS 67
+ E E G EE K E ED E++S
Sbjct: 199 LSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A
{Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB:
1etp_A* 1m6z_A*
Length = 190
Score = 26.4 bits (58), Expect = 5.6
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 136 HG----GSKIAQF---AGKHLHKYIVKT-REFKEGNITEALKKGFMDLDAAMLDDDALKD 187
H G+ +A F G+H Y K +F+EGN T M AA L + ++
Sbjct: 123 HAPNGVGNDLAGFPKLGGQH-AAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNKDIEA 181
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 8.9
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 37 EEKKYGGGRQEEEKKEEEEEDKEK 60
+E E+E +E+ ++D E+
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEE 122
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 26.4 bits (58), Expect = 9.6
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 123 DDPGTAFFAVYDGHGGSKIAQFA 145
G F ++ H ++A
Sbjct: 576 ALKGKRFVVMHLSHLHPLAERYA 598
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.398
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,353,012
Number of extensions: 197685
Number of successful extensions: 513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 34
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.2 bits)