RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6963
         (212 letters)



>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score =  116 bits (290), Expect = 4e-32
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 77  GQTLTEPVTNKDSSSVQNPLYKVGASCMQGWRITMEDAHSHILSLPD-DPGTAFFAVYDG 135
           G  L +P   K ++  Q    + G S MQGWR+ MEDAH+ ++ LP      +FFAVYDG
Sbjct: 1   GAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDG 60

Query: 136 HGGSKIAQFAGKHLHKYIVKTREFKEGN-------ITEALKKGFMDLDAAMLDDDALKDE 188
           H GS++A++  +HL  +I   ++FK          +   ++ GF+++D  M      K  
Sbjct: 61  HAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHG 120

Query: 189 L--AGTTAICILIKDNILYCRNVR 210
              +G+TA+ +LI     Y  N  
Sbjct: 121 ADRSGSTAVGVLISPQHTYFINCG 144


>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 98  KVGASCMQGW-RITMEDAHSHILSLPDDPGTAFFAVYDGHGGSKIAQFAGKHLHKYIVK- 155
           +  A   +G  R   ED+           G    A+ DG GG    + A + +   +   
Sbjct: 4   RYAARSDRGLVRANNEDSVY--------AGARLLALADGMGGHAAGEVASQLVIAALAHL 55

Query: 156 TREFKEGNITEALKKGFMDLDAAMLDDDALKDELAGTTAICILI 199
             +   G++   L       ++A+     ++ +L G       I
Sbjct: 56  DDDEPGGDLLAKLDAAVRAGNSAIAAQVEMEPDLEGMGTTLTAI 99


>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp.,
           strain TB-90 [TaxId: 1409]}
          Length = 154

 Score = 27.1 bits (60), Expect = 1.1
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 8/68 (11%)

Query: 78  QTLTEPVTNKDSSSVQNPLYKVGASCM------QGWRITMEDAHSHILS--LPDDPGTAF 129
              T      ++ S+Q+ +Y +G   +      Q      ++     +   +P+  G  +
Sbjct: 77  DIATSVFHETETLSIQHLIYLIGRRILERFPQLQEVYFESQNHTWDKIVEEIPESEGKVY 136

Query: 130 FAVYDGHG 137
                 +G
Sbjct: 137 TEPRPPYG 144


>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 118

 Score = 24.5 bits (53), Expect = 7.3
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 170 KGFMDLDAAMLDDDALKDELAGTTAICILIKDNILYC 206
           K F +LD+A+     L  +      +          C
Sbjct: 23  KRFFNLDSAVYRPGKLDVKTKELMGLVASTVLRCDDC 59


>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 201

 Score = 24.7 bits (54), Expect = 9.2
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 45  RQEEEKKEEEEEDKEKCSGEEDSHPSGFSFAMGQTLTEPVTNKDSSSVQNPLYKVGASCM 104
           R E+  KE EEE+++K  G     P     ++ + L +    KD   +Q+ + K      
Sbjct: 123 RIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPEELQKCFDVKDVQMLQDAISK------ 176

Query: 105 QGWRITMEDAHSHI 118
               +   DA  H+
Sbjct: 177 ----MDPTDAKYHM 186


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 820,397
Number of extensions: 37581
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 9
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)