BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6965
(1764 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/294 (82%), Positives = 250/294 (85%), Gaps = 10/294 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIVVTETGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFAVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIEIP + GMM G
Sbjct: 1433 LMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIEIPMNIGAGMMSG- 1491
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDS 1747
AGMFFGS ATPS +P TP N T A P SP
Sbjct: 1492 AGMFFGSMATPSM---SPQMTPWNVGATPGYGSVWSPAVGSGMTPGGPNFSPSG 1542
Score = 147 bits (371), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/74 (94%), Positives = 72/74 (97%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K+QDEED VDKMEDDMFLRC
Sbjct: 1222 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKLQDEEDTVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K+QDEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKLQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/287 (81%), Positives = 252/287 (87%), Gaps = 10/287 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP + G+MGG
Sbjct: 1431 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKYGIEIPMSIGPGIMGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLS 1744
AGMFFGSA+TPS Q+P T + +++P L S
Sbjct: 1490 AGMFFGSASTPS-------QSPSMTPWGQGATPAYSSSYSPGNLMGS 1529
Score = 141 bits (355), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K Q+EE+ VDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQEEEETVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/287 (82%), Positives = 252/287 (87%), Gaps = 9/287 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1313
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1314 RIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1373
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1374 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1433
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP + GM+GG
Sbjct: 1434 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGMIGG- 1492
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLS 1744
GMFFGSAATPS +P TP N S T S +P ++ S
Sbjct: 1493 VGMFFGSAATPSM---SPQMTPWNQSATPGYSSSWS---SPGNVYGS 1533
Score = 142 bits (357), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRC
Sbjct: 1223 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRC 1282
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1283 IEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/287 (82%), Positives = 254/287 (88%), Gaps = 7/287 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV
Sbjct: 1313 RIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
L+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIEIP+ G +G G
Sbjct: 1433 LLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKYGIEIPMNLG-VGMSTG 1491
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPD 1746
+ FGSAATPS+ +P +TP T QS ++P ++P
Sbjct: 1492 LMFGSAATPST---SPQRTPWAQGATPLYGQS---MWSPGGSGMTPG 1532
Score = 139 bits (349), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFG+DLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRC
Sbjct: 1222 MEQIAEKINAGFGEDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEEQVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
Length = 1699
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/294 (81%), Positives = 247/294 (84%), Gaps = 10/294 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFK+IA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIVITETGEFKSIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAA+HAE DPMRGVSENIIMGQL RMGTGCFDLLLDAEKCK GIEIP + GMMG
Sbjct: 1433 LMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCKHGIEIPMNIGAGMMG-- 1490
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDS 1747
AGMFFGSA TPSSM +P TP T A P SP
Sbjct: 1491 AGMFFGSAGTPSSM--SPQMTPWAQGSTPAYGSVWSPGLGSGMTPGGPGFSPSG 1542
Score = 142 bits (358), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/74 (91%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK QDEE+ VDKMEDDMFLRC
Sbjct: 1222 MEHIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 498 bits (1281), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/283 (83%), Positives = 250/283 (88%), Gaps = 11/283 (3%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1310
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--TGMMGG 1696
VL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G+MG
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGT 1490
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
AGMFFGS ATPS +P T AT + +P+
Sbjct: 1491 -AGMFFGSVATPS-------MSPQMTPWMGATPGYGASSMSPA 1525
Score = 137 bits (346), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QD EE+ VDKMEDDMFLR
Sbjct: 1220 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLR 1279
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1280 CIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/282 (81%), Positives = 250/282 (88%), Gaps = 9/282 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG-MMGG-P 1697
L+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLD+EKCK G+EIP+ MMGG
Sbjct: 1433 LLDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDSEKCKAGMEIPMPHAHMMGGLG 1492
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
AGMFF SA TPS +P+NT + +++P
Sbjct: 1493 AGMFFSSATTPS-------MSPNNTPWSQGATPGYPHSWSPG 1527
Score = 142 bits (357), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQDEE+ VDKMEDDMFLRC
Sbjct: 1222 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQDEEETVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.5 bits (197), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/282 (83%), Positives = 249/282 (88%), Gaps = 9/282 (3%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1310
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM-MGGP 1697
VL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G + G
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGT 1490
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
AGMFFGS ATPS +P T AT + +P+
Sbjct: 1491 AGMFFGSVATPS-------MSPQMTPWMGATPGYGASSMSPA 1525
Score = 136 bits (343), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QD EE+ VDKMEDDMFLR
Sbjct: 1220 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLR 1279
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1280 CIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/283 (83%), Positives = 250/283 (88%), Gaps = 11/283 (3%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD+K
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1310
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--TGMMGG 1696
VL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G+MG
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKVGIEIPMAVGAGVMGT 1490
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
AGMFFGS ATPS +P T AT + +P+
Sbjct: 1491 -AGMFFGSVATPS-------MSPQMTPWMGATPGYGASSMSPA 1525
Score = 137 bits (345), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QD EE+ VDKMEDDMFLR
Sbjct: 1220 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDSEEETVDKMEDDMFLR 1279
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1280 CIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/294 (80%), Positives = 247/294 (84%), Gaps = 10/294 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQ +SKK
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQQESKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+I+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 KIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAA+HAE DPMRGVSENIIMGQL RMGTGCFDLLLDAEKCK GIEIP + GMMG
Sbjct: 1433 LMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCKHGIEIPMNIGAGMMG-- 1490
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDS 1747
AGMFFG+A TPSSM +P TP T A + P SP
Sbjct: 1491 AGMFFGTAGTPSSM--SPQMTPWAQGATPAYASTWSPGLGSGMTPGGPGFSPSG 1542
Score = 142 bits (358), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/74 (91%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK QDEE+ VDKMEDDMFLRC
Sbjct: 1222 MEHIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.9 bits (198), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 494 bits (1273), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/282 (81%), Positives = 249/282 (88%), Gaps = 9/282 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1312 RIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1371
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN+VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1372 EKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1431
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG-MMGG-P 1697
LMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD+EKCK G+EIP+ MMGG
Sbjct: 1432 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDSEKCKAGMEIPMPHAHMMGGLG 1491
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
GMFFGSA TPS +P+NT + +++P
Sbjct: 1492 VGMFFGSATTPS-------MSPNNTPWSQGATPGYPHSWSPG 1526
Score = 142 bits (358), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K+QDEE+ VDKMEDDMFLRC
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKLQDEEETVDKMEDDMFLRC 1280
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1281 IEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K+QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 494 bits (1272), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/283 (82%), Positives = 250/283 (88%), Gaps = 11/283 (3%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD+K
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1310
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF+VLGIEAVRKS
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFEVLGIEAVRKS 1370
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--TGMMGG 1696
VL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G+MG
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGT 1490
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
AGMFFGS ATPS +P T AT + +P+
Sbjct: 1491 -AGMFFGSVATPS-------MSPQMTPWMGATPGYGASSMSPA 1525
Score = 137 bits (345), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QD EE+ VDKMEDDMFLR
Sbjct: 1220 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDSEEETVDKMEDDMFLR 1279
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1280 CIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/281 (82%), Positives = 248/281 (88%), Gaps = 6/281 (2%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1311
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1312 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1371
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1372 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1431
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
VL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G G A
Sbjct: 1432 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMGTA 1491
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
GMFFGS + I N + +P T AT + +P+
Sbjct: 1492 GMFFGSV----TGISNSM-SPQMTPWMGATPGYGASSMSPA 1527
Score = 137 bits (345), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QD EE+ VDKMEDDMFLR
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLR 1280
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1281 CIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/282 (82%), Positives = 248/282 (87%), Gaps = 8/282 (2%)
Query: 1460 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1310
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM-MGGP 1697
VL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G M G
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMMGT 1490
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
AGMFFGS + SSM +P T AT + +P+
Sbjct: 1491 AGMFFGSVTSMSSM------SPQMTPWMGATPGYGASSMSPA 1526
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/75 (88%), Positives = 69/75 (92%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QD E+ VDKMEDDMFLR
Sbjct: 1220 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDTDEETVDKMEDDMFLR 1279
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1280 CIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/291 (79%), Positives = 248/291 (85%), Gaps = 13/291 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQGIE+IGKVYMHLPQTD KK
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIESIGKVYMHLPQTDQKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+GEFKAIA+WLLETDGT LM+VLSERDVDPVRT+SNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIVVTEAGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEIFAVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
L++AA HAE DP+RGVSENII+GQLPRMGTGCFDLLLDAEKCK GIEIPL+ G G G
Sbjct: 1433 LLEAAGHAEVDPLRGVSENIILGQLPRMGTGCFDLLLDAEKCKQGIEIPLSIGAGMG-TG 1491
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQ-----------SRDKAFAPS 1739
MFFGSAATP + + +P TP N T A AF+PS
Sbjct: 1492 MFFGSAATPMAGM-SPQMTPWNQVATPAYGSVWSPGLGSGMTPGGPAFSPS 1541
Score = 139 bits (351), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 69/74 (93%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EK+NAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK +EE+ VDKMEDDMFLRC
Sbjct: 1222 MEQIAEKVNAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKFSEEEEQVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSK +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 491 bits (1264), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/262 (88%), Positives = 242/262 (92%), Gaps = 4/262 (1%)
Query: 1460 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1311
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1312 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1371
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1372 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1431
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM-MGGP 1697
VL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G M G
Sbjct: 1432 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMMGT 1491
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
AGMFFGS SSM +P TP
Sbjct: 1492 AGMFFGSVTGMSSM--SPQMTP 1511
Score = 135 bits (339), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/75 (88%), Positives = 69/75 (92%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QD E+ VDKMEDDMFLR
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDTDEETVDKMEDDMFLR 1280
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1281 CIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/294 (78%), Positives = 254/294 (86%), Gaps = 7/294 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGT 1490
Query: 1698 AGMFFGSAATPS-SMIHNPLQTPHNTSLTNATHQSRDKA---FAPSELFLSPDS 1747
A MF G +TPS + P+ ++ + N T S A ++PS SP S
Sbjct: 1491 A-MFIGGGSTPSMTPPMTPVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTS 1543
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/262 (87%), Positives = 243/262 (92%), Gaps = 4/262 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSKK
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKK 1291
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+G+FKAIA+WLLETDGTSLMKVLSERDVDPVRT+SNDICEIF VLGIEAVRKSV
Sbjct: 1292 RIVVTETGDFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSV 1351
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1352 EKEMNMVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1411
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLPR+GTGCFDL+LDAEKCK GIEIP + GM+GG
Sbjct: 1412 LMDAAAHAEVDPMRGVSENIIMGQLPRLGTGCFDLILDAEKCKCGIEIPMNIGVGMLGG- 1470
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
G+FFGSA TPSS + +P TP
Sbjct: 1471 HGVFFGSAGTPSSGM-SPQMTP 1491
Score = 140 bits (353), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK Q+EE+ VDKMEDDMFLRC
Sbjct: 1201 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKFQEEEEQVDKMEDDMFLRC 1260
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1261 IEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/284 (82%), Positives = 250/284 (88%), Gaps = 11/284 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1309
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1310 RIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1369
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1370 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1429
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDA+KCKDGI+I +GG G
Sbjct: 1430 LMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDADKCKDGIDI---ANTLGGVVG 1486
Query: 1700 --MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSEL 1741
FFG A TPS+ +P TP + T A S A++P++
Sbjct: 1487 DIGFFGIATTPSA---SPRMTPWSQGATPAHGAS---AWSPNQY 1524
Score = 140 bits (353), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRC
Sbjct: 1219 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEENVDKMEDDMFLRC 1278
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1279 IEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1292
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 488 bits (1256), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/255 (88%), Positives = 240/255 (94%), Gaps = 6/255 (2%)
Query: 1460 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1516
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1309
Query: 1517 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
+KKRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR
Sbjct: 1310 AKKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1369
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
KSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET
Sbjct: 1370 KSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1429
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG--MM 1694
VDVL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+ G +M
Sbjct: 1430 VDVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKQGIEIPMGVGANIM 1489
Query: 1695 GGPAGMFFGSAATPS 1709
GG GMFFG+A TPS
Sbjct: 1490 GG-TGMFFGNAVTPS 1503
Score = 131 bits (329), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 70/77 (90%), Gaps = 3/77 (3%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM---QDEEDAVDKMEDDMF 57
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS+D+K Q+ E++VDKMEDDMF
Sbjct: 1219 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEDNKFTDTQEVEESVDKMEDDMF 1278
Query: 58 LRCIEANMLSDMTLQFI 74
LRCIEANMLSDMTLQ I
Sbjct: 1279 LRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 116 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 158 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 200 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 242 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 284 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 326 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 368 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 410 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 452 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 494 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 536 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 578 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 620 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 662 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 704 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 746 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 788 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 830 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 872 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 914 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 956 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 998 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 1040 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 1082 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 1124 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 1166 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 1208 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 1250 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 1292 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 1334 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 3/46 (6%)
Query: 1376 IRIMNSDDSKM---QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNS+D+K Q+ E++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
Length = 1429
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 221/252 (87%), Positives = 236/252 (93%), Gaps = 3/252 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 852
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 853 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 912
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 913 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 972
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L M+GG
Sbjct: 973 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGG- 1031
Query: 1698 AGMFFGSAATPS 1709
A MF G +TPS
Sbjct: 1032 AAMFIGGGSTPS 1043
Score = 132 bits (333), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 762 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 821
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 822 IEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 793 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 835
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/294 (78%), Positives = 247/294 (84%), Gaps = 16/294 (5%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + MMGG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSAMMGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNA------THQSRDKAFAPSELFLSP 1745
A MF G +TPS TP T N + Q + P SP
Sbjct: 1490 AAMFIGGGSTPS-------MTPPMTPWVNCNTPRYFSPQGHASSMTPGGPSFSP 1536
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/268 (84%), Positives = 242/268 (90%), Gaps = 7/268 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSKK
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKK 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RII+TE+GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1312 RIIMTETGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1371
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN+VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1372 EKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1431
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK+GIEI M GG G
Sbjct: 1432 LMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKEGIEI----SMTGGADG 1487
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNA 1727
+FG +TP + +P +TP ++ T A
Sbjct: 1488 AYFGGGSTPQT---SPSRTPWSSGATPA 1512
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 69/74 (93%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD K +EE++VDKMEDDMFLRC
Sbjct: 1221 MEQISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKSGEEEESVDKMEDDMFLRC 1280
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1281 IEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD K +EE++VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/293 (81%), Positives = 251/293 (85%), Gaps = 9/293 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1292
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV
Sbjct: 1293 RIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1352
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1353 EKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1412
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIEIP+ MG
Sbjct: 1413 LMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKYGIEIPMNIGVGMGMGG 1472
Query: 1699 GMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSR-DKAFAPSELFLSPDS 1747
GM FGSAA+PSS P TP N T + + D P+ + SP +
Sbjct: 1473 GMLFGSAASPSS----PQMTPWNQAGTPMYGSVWSPHIDSGMTPAGIAFSPSA 1521
Score = 140 bits (353), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFG+DLNCIFNDDNAEKLVLRIRIMNSDDSK QDEE+ VDKMEDDMFLRC
Sbjct: 1202 MEQIAEKINAGFGEDLNCIFNDDNAEKLVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRC 1261
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1262 IEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/263 (87%), Positives = 243/263 (92%), Gaps = 6/263 (2%)
Query: 1460 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD+K
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1311
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1312 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1371
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1372 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1431
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--TGMMGG 1696
VL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G+MG
Sbjct: 1432 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPIAVGAGVMGS 1491
Query: 1697 PAGMFFGSAATPSSMIHNPLQTP 1719
AGMFFGS SSM +P TP
Sbjct: 1492 -AGMFFGSVPGMSSM--SPQMTP 1511
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 69/75 (92%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K Q+ E+ +DKMEDDMFLR
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQETDEEPMDKMEDDMFLR 1280
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1281 CIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K Q+ E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/282 (81%), Positives = 247/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A +F G +TPS TP T N H R F+PS
Sbjct: 1490 AAIFMGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPS 1521
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/282 (81%), Positives = 246/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1303
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1304 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1363
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1364 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1423
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1424 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGG- 1482
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A MF G +TPS TP T N H R F+P
Sbjct: 1483 AAMFIGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1514
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1213 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1272
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1273 IEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 485 bits (1248), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1490 AAMFIGGGSTPSM---TPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 485 bits (1248), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1490 AAMFIGGGSTPSM---TPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 485 bits (1248), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/282 (81%), Positives = 247/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A +F G +TPS TP T N H R F+PS
Sbjct: 1490 AAIFMGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPS 1521
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 485 bits (1248), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1490 AAMFIGGGSTPSM---TPPMTPWANCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 485 bits (1248), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/282 (81%), Positives = 246/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1291
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1292 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1351
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1352 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1411
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1412 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGG- 1470
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A MF G +TPS TP T N H R F+P
Sbjct: 1471 AAMFIGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1502
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1201 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1260
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1261 IEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 485 bits (1248), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDPVRT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGT 1490
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1491 A-MFIGGGSTPSM---TPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 485 bits (1248), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/282 (81%), Positives = 246/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1291
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1292 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1351
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1352 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1411
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1412 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGG- 1470
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A MF G +TPS TP T N H R F+P
Sbjct: 1471 AAMFIGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1502
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1201 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1260
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1261 IEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 485 bits (1248), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/282 (81%), Positives = 246/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1291
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1292 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1351
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1352 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1411
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1412 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGG- 1470
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A MF G +TPS TP T N H R F+P
Sbjct: 1471 AAMFIGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1502
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1201 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1260
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1261 IEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 485 bits (1248), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDPVRT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGT 1490
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1491 A-MFIGGGSTPSM---TPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 484 bits (1247), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 249/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1490 AAMFIGGGSTPSM---TPPMTPWANCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 484 bits (1247), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1232
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1233 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1292
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1293 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1352
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1353 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGT 1412
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1413 A-MFIGGGSTPSM---TPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1460
Score = 132 bits (333), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1142 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1201
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1202 IEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1173 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1215
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 484 bits (1247), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 249/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1490 AAMFIGGGSTPSM---TPPMTPWANCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|78183109|gb|ABB29550.1| putative RNA polymerase II 215 kD subunit [Drosophila teissieri]
Length = 769
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 452
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 453 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 512
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 513 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 572
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 573 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG- 631
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 632 AAMFIGGGSTPS---MTPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 680
Score = 130 bits (327), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 362 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 421
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 422 IEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGT 1490
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1491 A-MFIGGGSTPSM---TPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGT 1490
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1491 A-MFIGGGSTPSM---TPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/252 (87%), Positives = 236/252 (93%), Gaps = 3/252 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGG- 1489
Query: 1698 AGMFFGSAATPS 1709
A MF G +TPS
Sbjct: 1490 AAMFIGGGSTPS 1501
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|78183111|gb|ABB29551.1| putative RNA polymerase II 215 kD subunit [Drosophila yakuba]
Length = 766
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 452
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 453 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 512
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 513 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 572
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 573 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG- 631
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 632 AAMFIGGGSTPS---MTPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 680
Score = 130 bits (327), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 362 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 421
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 422 IEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/282 (80%), Positives = 246/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1291
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVR+SV
Sbjct: 1292 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRRSV 1351
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1352 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1411
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1412 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGG- 1470
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A MF G +TPS TP T N H R F+P
Sbjct: 1471 AAMFIGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1502
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1201 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1260
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1261 IEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 249/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITENGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1490 AAMFIGGGSTPSM---TPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|78183103|gb|ABB29547.1| putative RNA polymerase II 215 kD subunit [Drosophila erecta]
Length = 760
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 452
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 453 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 512
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 513 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 572
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 573 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG- 631
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 632 AAMFIGGGSTPS---MTPPMTPWANCNTPRYFSPPGHVS---AMTPGGPSFSPSA 680
Score = 130 bits (327), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 362 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 421
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 422 IEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
>gi|78183105|gb|ABB29548.1| putative RNA polymerase II 215 kD subunit [Drosophila orena]
Length = 750
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 250/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 452
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 453 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 512
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 513 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 572
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 573 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGG- 631
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 632 AAMFIGGGSTPS---MTPPMTPWDNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 680
Score = 130 bits (326), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 362 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 421
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 422 IEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/282 (80%), Positives = 246/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A +F G +TPS TP T N H R F+P
Sbjct: 1490 AAIFMGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1521
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>gi|78183107|gb|ABB29549.1| putative RNA polymerase II 215 kD subunit [Drosophila simulans]
Length = 746
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 249/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 452
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 453 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 512
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 513 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 572
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L M+GG
Sbjct: 573 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGG- 631
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 632 AAMFIGGGSTPS---MTPPMTPWVNCNTPRYFSPPGHVS---AMTPGGPSFSPSA 680
Score = 130 bits (326), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 362 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 421
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 422 IEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
Score = 74.3 bits (181), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 393 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 435
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/307 (78%), Positives = 257/307 (83%), Gaps = 12/307 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+ M G
Sbjct: 1433 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMNVGAGMMGGG 1492
Query: 1699 GMFFGSAATPS-SMIHNPL-QTP----HNTSLTNATHQSRDKAFAPSEL----FLSPDSR 1748
GM FGSA TPS S H P TP ++L + +F+PS LSP
Sbjct: 1493 GMLFGSAQTPSMSPHHTPWSSTPAYMWSPSNLLGSGMTPGGPSFSPSGASDASGLSPGYS 1552
Query: 1749 YPYIREL 1755
PY +L
Sbjct: 1553 -PYSPQL 1558
Score = 140 bits (353), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K QDEE+ VDKMEDDMFLRC
Sbjct: 1222 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQDEEETVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/287 (79%), Positives = 243/287 (84%), Gaps = 13/287 (4%)
Query: 1460 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDS
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDS 1294
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
KK+I++T++G FKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRK
Sbjct: 1295 KKKIVVTDNGRFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1354
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1355 SVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1414
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMG 1695
DVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKCK GIEIP L GMM
Sbjct: 1415 DVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCKHGIEIPTHLGAGMMA 1474
Query: 1696 GP---AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
GP G+F+ +ATPSSM +PH T S A++P
Sbjct: 1475 GPGMVGGVFYSGSATPSSM------SPHMTPWNQGGTPSYASAWSPG 1515
Score = 127 bits (319), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 66/76 (86%), Gaps = 2/76 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS--DDSKMQDEEDAVDKMEDDMFL 58
ME I+EKIN GFGDDLNCIFNDDNAEKLVLRIRIMNS +D K DEE+ DKMEDDMFL
Sbjct: 1204 MEQIAEKINLGFGDDLNCIFNDDNAEKLVLRIRIMNSSGEDGKFNDEEEQADKMEDDMFL 1263
Query: 59 RCIEANMLSDMTLQFI 74
RCIEANMLSDMTLQ I
Sbjct: 1264 RCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 116 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 158 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 200 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 242 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 284 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 326 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 368 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 410 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 452 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 494 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 536 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 578 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 620 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 662 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 704 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 746 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 788 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 830 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 872 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 914 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 956 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 998 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1040 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1082 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1124 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1166 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1208 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1250 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1292 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1334 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1376 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNS +D K DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSSGEDGKFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1279
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 482 bits (1240), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/282 (80%), Positives = 246/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1303
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT++GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1304 RIVITDTGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1363
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1364 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1423
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1424 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGT 1483
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A MF G +TPS TP T N H R F+P
Sbjct: 1484 A-MFIGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1514
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1213 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1272
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1273 IEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 482 bits (1240), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/282 (80%), Positives = 245/282 (86%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1303
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT++GEFKAI +WLLETDGTS+MKVLSERDVDP RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1304 RIVITDTGEFKAIGEWLLETDGTSMMKVLSERDVDPQRTSSNDICEIFQVLGIEAVRKSV 1363
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1364 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1423
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1424 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRYGIEIPNSLGSSMLGG- 1482
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A MF G +TPS TP T N H R F+P
Sbjct: 1483 AAMFIGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1514
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1213 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1272
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1273 IEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1286
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 481 bits (1238), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/282 (80%), Positives = 246/282 (87%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1291
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT++GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1292 RIVITDTGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1351
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1352 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1411
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1412 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGT 1471
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A MF G +TPS TP T N H R F+P
Sbjct: 1472 A-MFIGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1502
Score = 132 bits (331), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1201 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1260
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1261 IEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/291 (78%), Positives = 243/291 (83%), Gaps = 4/291 (1%)
Query: 1460 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD+K
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1308
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+RI+IT GEFKAI +WLLETDGT++MKVLSERDVDPVRT SNDICEIFQVLGIEAVRKS
Sbjct: 1309 RRIVITPEGEFKAIGEWLLETDGTAMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKS 1368
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1369 VEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1428
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
VL DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK G+EIP T +MGG +
Sbjct: 1429 VLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIP-HTSIMGG-S 1486
Query: 1699 GMFFGSAATPS-SMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSR 1748
GMFFG ATPS S P Q + + P SP ++
Sbjct: 1487 GMFFGPGATPSMSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGGPSFSPSAQ 1537
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 69/75 (92%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQ-DEEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNA+KLVLRIRIMN DDSK Q +EE+ +DKMEDDMFLR
Sbjct: 1218 MEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNGDDSKFQENEEENMDKMEDDMFLR 1277
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1278 CIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 72.0 bits (175), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN DDSK Q +EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1292
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/282 (80%), Positives = 244/282 (86%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1291
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1292 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1351
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEM+ VL YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1352 EKEMDAVLHSYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1411
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L + M+GG
Sbjct: 1412 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGG- 1470
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
A MF G +TPS TP T N H R F+P
Sbjct: 1471 AAMFIGGGSTPS-------MTPPMTPWVNC-HTPR--YFSPP 1502
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1201 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1260
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1261 IEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1274
>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
Length = 1677
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/289 (79%), Positives = 246/289 (85%), Gaps = 12/289 (4%)
Query: 1460 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1515
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1307
Query: 1516 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1575
D+KKRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1308 DAKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFAVLGIEAV 1367
Query: 1576 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1635
RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1368 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1427
Query: 1636 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1695
TVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GI IP ATG
Sbjct: 1428 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIAIPQATGADL 1487
Query: 1696 GPAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLS 1744
+GMFF SAATPS +P TP N + T ++PS+ +L
Sbjct: 1488 LSSGMFFSSAATPSM---SPNMTPWNHA---GTPYGAGSVWSPSQGYLG 1530
Score = 124 bits (311), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 67/78 (85%), Gaps = 6/78 (7%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQ----DEEDAVDKMEDDM 56
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMN+DD K DEE VDKM+DDM
Sbjct: 1219 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNTDDGKFGEAGADEE--VDKMDDDM 1276
Query: 57 FLRCIEANMLSDMTLQFI 74
FLRCIEANMLSDMTLQ I
Sbjct: 1277 FLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 116 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 158 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 200 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 242 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 284 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 326 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 368 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 410 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 452 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 494 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 536 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 578 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 620 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 662 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 704 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 746 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 788 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 830 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 872 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 914 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 956 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 998 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 1040 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 1082 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 1124 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 1166 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 1208 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 1250 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 1292 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 1334 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 6/47 (12%)
Query: 1376 IRIMNSDDSKMQ----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN+DD K DEE VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNTDDGKFGEAGADEE--VDKMDDDMFLRCIEANMLSDMTLQGI 1294
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/286 (81%), Positives = 247/286 (86%), Gaps = 8/286 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP+ M
Sbjct: 1433 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMNVGAGMMAGG 1492
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLS 1744
GMFFGSAATPS +PH T T + ++P + S
Sbjct: 1493 GMFFGSAATPS-------MSPHLTPWTQGATPAYGSMWSPGNMLGS 1531
Score = 142 bits (357), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRC
Sbjct: 1222 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/293 (82%), Positives = 248/293 (84%), Gaps = 7/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSKK
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKK 1291
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1292 RIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1351
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1352 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1411
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI-PLATGMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKCK GIEI P A M G A
Sbjct: 1412 LMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCKHGIEIAPGAGAGMMGGA 1471
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDS 1747
GMFFGSAATPSSM +P TP N T A P SP
Sbjct: 1472 GMFFGSAATPSSM--SPQMTPWNQVATPAYGSGWSPGVGSGMTPGGPGFSPSG 1522
Score = 142 bits (357), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/74 (91%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK QDEE+ VDKMEDDMFLRC
Sbjct: 1201 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKFQDEEEQVDKMEDDMFLRC 1260
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1261 IEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSK QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1232 IRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1274
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/290 (79%), Positives = 247/290 (85%), Gaps = 13/290 (4%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1311
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+IT+SGEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1312 KRIVITDSGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1371
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1372 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1431
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
VLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDA+KCK+G+E+ G
Sbjct: 1432 VLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAQKCKNGMEMGGLGVGTGLGT 1491
Query: 1699 GMFFGSAATPSSMIHNPL---QTPHNTSLTNATHQ------SRDKAFAPS 1739
MFFG TPS H+P TP S+ + Q +F+PS
Sbjct: 1492 SMFFG---TPSLTPHSPWNAQGTPAYGSMAWSPSQYGSSMTPGGPSFSPS 1538
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/75 (88%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K QD EE+ VDKMEDDMFLR
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQDNEEETVDKMEDDMFLR 1280
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1281 CIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/280 (84%), Positives = 249/280 (88%), Gaps = 6/280 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSKK
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKK 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RII+TESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1312 RIIVTESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1371
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1372 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1431
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIEIP+ M G
Sbjct: 1432 LMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIEIPMNMGMGMMGGG 1491
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAP 1738
GMFFGSAATPS +P TP N T + S +++P
Sbjct: 1492 GMFFGSAATPSM---SPQTTPWNQGATPSYPGS--SSWSP 1526
Score = 138 bits (348), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K+ +EE+ VDKMEDDMFLRC
Sbjct: 1221 MEQISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKLTEEEETVDKMEDDMFLRC 1280
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1281 IEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K+ +EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/291 (77%), Positives = 241/291 (82%), Gaps = 4/291 (1%)
Query: 1460 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD+K
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1293
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+RI+IT GEFKAI +WLLETDGTS+MKVLSERDVDPVRT SNDICEIFQVLGIEAVRKS
Sbjct: 1294 RRIVITPEGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKS 1353
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1354 VEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1413
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
VL DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK G+EIP T +MG +
Sbjct: 1414 VLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIP-HTSIMGS-S 1471
Query: 1699 GMFFGSAATPS-SMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSR 1748
GMFFG ATPS S P Q + P SP ++
Sbjct: 1472 GMFFGPGATPSMSPAMTPWQQSQTPGYGEWSPSGPPSGMTPGGPSFSPSAQ 1522
Score = 127 bits (320), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/75 (82%), Positives = 69/75 (92%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNA+KLVLRIRIMN++D+K QD E+ +DKMEDDMFLR
Sbjct: 1203 MEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEDNKFQDNDEENMDKMEDDMFLR 1262
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1263 CIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
Score = 67.4 bits (163), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++D+K QD E+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGI 1277
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/299 (76%), Positives = 245/299 (81%), Gaps = 10/299 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD+KK
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKK 1308
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT GEFK I +WLLETDGTS+MKVLSERDVDPVRT+SNDICEIF VLGIEAVRKSV
Sbjct: 1309 RIVITPEGEFKPIGEWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSV 1368
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1369 EKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1428
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
L DAAAHAE DPMRGVSENII+GQLPRMGTGCFDLLLDAEKCK G+EIP T +MG G
Sbjct: 1429 LNDAAAHAEVDPMRGVSENIILGQLPRMGTGCFDLLLDAEKCKLGMEIP-HTSIMGA-TG 1486
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQS----RDKAFAPS----ELFLSPDSRYP 1750
MFFGSAATPS TP + + S +F+PS +SP S P
Sbjct: 1487 MFFGSAATPSMTPWQQSATPGYGGWSPSGPASGMTPGGPSFSPSAQSDASGMSPSSWSP 1545
Score = 128 bits (321), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 67/74 (90%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNA+KLVLRIRIMN D+ ++EE+ VDKMEDDMFLRC
Sbjct: 1218 MEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNEDNKFQENEEENVDKMEDDMFLRC 1277
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1278 IEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 68.6 bits (166), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN D+ ++EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGI 1291
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/294 (77%), Positives = 245/294 (83%), Gaps = 12/294 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSKK
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKK 1309
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIITE+GEFKAIA+WLLETDGTS+MKVLSERDVDP+RTFSNDICEIF VLGIEAVRKSV
Sbjct: 1310 RIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDPIRTFSNDICEIFAVLGIEAVRKSV 1369
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1370 EKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1429
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAA HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC++GI+I L M+G
Sbjct: 1430 LMDAACHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCREGIDIANTLGASMIG-- 1487
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNA----THQSRDKAFAPSELFLSPDS 1747
+FG ATPS+ +P TP N T A ++ P SP
Sbjct: 1488 EIPYFG-MATPST---SPRMTPWNQGATPAYIASSYSHSPYGMTPGGASFSPSG 1537
Score = 139 bits (350), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K QDEE+ VDKMEDDMFLRC
Sbjct: 1219 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQDEEETVDKMEDDMFLRC 1278
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1279 IEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 78.2 bits (191), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/299 (75%), Positives = 246/299 (82%), Gaps = 10/299 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD+KK
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKK 1308
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT GEFK I +WLLETDGTS+MKVLSERDVDPVRT+SNDICEIF VLGIEAVRKSV
Sbjct: 1309 RIVITPEGEFKPIGEWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSV 1368
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1369 EKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1428
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
L DAAAHAE DPMRGVSENII+GQLPRMGTGCFDLLLDAEKCK G+EIP T ++GG G
Sbjct: 1429 LNDAAAHAEVDPMRGVSENIILGQLPRMGTGCFDLLLDAEKCKLGMEIP-HTSILGG-TG 1486
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQS----RDKAFAPS----ELFLSPDSRYP 1750
MFFGSAATPS TP + + S +F+PS +SP S P
Sbjct: 1487 MFFGSAATPSMTPWQQSATPGYGGWSPSGPASGMTPGGPSFSPSAQSDASGMSPSSWSP 1545
Score = 125 bits (315), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNA+KLVLRIRIMN D+ ++EE+ +DKMEDDMFLRC
Sbjct: 1218 MEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNEDNKFQENEEENMDKMEDDMFLRC 1277
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1278 IEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN D+ ++EE+ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGI 1291
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 216/232 (93%), Positives = 227/232 (97%), Gaps = 1/232 (0%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1311
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI++T++GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1312 KRIVVTDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1371
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1372 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1431
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA 1690
VL+DAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A
Sbjct: 1432 VLLDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMA 1483
Score = 137 bits (344), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QD EE+ VDKMEDDMFLR
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDTEEETVDKMEDDMFLR 1280
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1281 CIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 471 bits (1213), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/286 (82%), Positives = 252/286 (88%), Gaps = 8/286 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP++ G M G
Sbjct: 1433 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMSVGGGMMGGV 1492
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLS 1744
GMFFGSAATPS +P TP N T S ++P+ + S
Sbjct: 1493 GMFFGSAATPSM---SPQMTPWNQVST----PSYSSVWSPANMLGS 1531
Score = 140 bits (354), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRC
Sbjct: 1222 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/289 (79%), Positives = 247/289 (85%), Gaps = 15/289 (5%)
Query: 1460 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1515
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1311
Query: 1516 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1575
DSKKR++ITESGEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1312 DSKKRMVITESGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAV 1371
Query: 1576 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1635
RKSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1372 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1431
Query: 1636 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL--ATGM 1693
TVDV+MDAA+HAE DPMRGVSENIIMGQL RMGTGCFDLLLDAEKCK GIE+P+ A G+
Sbjct: 1432 TVDVIMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCKAGIELPMAGAAGL 1491
Query: 1694 M---GGPAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
+ GG GMFFGSAATPS +P TP + +T S A++P+
Sbjct: 1492 VPGAGGTGGMFFGSAATPSM---SPRMTPWSAGVTPGYGGS---AWSPA 1534
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/78 (78%), Positives = 64/78 (82%), Gaps = 4/78 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS----DDSKMQDEEDAVDKMEDDM 56
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS D ++ VDKMEDDM
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFGGGGGDGDEEVDKMEDDM 1280
Query: 57 FLRCIEANMLSDMTLQFI 74
FLRCIEANMLSDMTLQ I
Sbjct: 1281 FLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 116 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 158 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 200 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 242 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 284 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 326 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 368 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 410 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 452 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 494 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 536 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 578 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 620 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 662 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 704 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 746 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 788 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 830 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 872 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 914 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 956 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 998 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1040 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1082 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1124 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1166 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1208 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1250 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1292 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1334 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 1376 IRIMNSDDSKMQDEE----DAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD K + VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGI 1298
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/269 (86%), Positives = 247/269 (91%), Gaps = 3/269 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1292
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT++GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1293 RIVITDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFAVLGIEAVRKSV 1352
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1353 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1412
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EKCK GIEIP+ M G A
Sbjct: 1413 LMDAASHAEQDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKCKQGIEIPMNIGAGMMGGA 1472
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNA 1727
GMF+GSAATPS M +P TP N T A
Sbjct: 1473 GMFYGSAATPSGM--SPQMTPWNQGGTPA 1499
Score = 122 bits (306), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS++SK Q+EE+ VDKMEDDMFLRC
Sbjct: 1202 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEESKFQEEEEQVDKMEDDMFLRC 1261
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1262 IEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNS++SK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1275
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/293 (79%), Positives = 249/293 (84%), Gaps = 8/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGIEAIGKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT-GMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDA+KCK GIEIP++ M G A
Sbjct: 1433 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDADKCKAGIEIPMSVGAGMMGGA 1492
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDS 1747
GMFFGSAATPS +P TP N T A + P SP
Sbjct: 1493 GMFFGSAATPSM---SPQMTPWNQGTTPAYNSGWSPVLGSGMTPGGPCFSPSG 1542
Score = 135 bits (339), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 69/74 (93%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K Q+E + VDKMEDDMFLRC
Sbjct: 1222 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEEGETVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLS+MTLQ I
Sbjct: 1282 IEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K Q+E + VDKMEDDMFLRCIEANMLS+MTLQ I
Sbjct: 1253 IRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGI 1295
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 232/291 (79%), Positives = 249/291 (85%), Gaps = 4/291 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSKK
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKK 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RII+T++GEFKAIA+WLLETDGTSLMKVLSERDVDPVRT+SNDICEIF VLGIEAVRKSV
Sbjct: 1312 RIIVTDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSV 1371
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1372 EKEMNMVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1431
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMGGPA 1698
LMDAA+HAE DPMRGVSENII+GQLPR+GTGCFDL+LDAEKCK GIE+P+ M G
Sbjct: 1432 LMDAASHAEVDPMRGVSENIILGQLPRLGTGCFDLILDAEKCKYGIELPMNIGAGMMGGV 1491
Query: 1699 GMFFGSAATPSSMIHNPLQTP--HNTSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSAATPSS + +P TP T L + + S P SP
Sbjct: 1492 GMFFGSAATPSSGM-SPQMTPWAQATPLYSGSGLSPSTGMTPGGPGFSPSG 1541
Score = 140 bits (354), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK Q+EE+ VDKMEDDMFLRC
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKFQEEEEQVDKMEDDMFLRC 1280
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1281 IEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 464 bits (1194), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/338 (68%), Positives = 247/338 (73%), Gaps = 49/338 (14%)
Query: 1460 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQGI++IGKVYMHLPQTDS
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGIDSIGKVYMHLPQTDS 1311
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
KKRIIIT++GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRK
Sbjct: 1312 KKRIIITDTGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1371
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--------- 1688
DVL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEK KDGIEIP
Sbjct: 1432 DVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKAKDGIEIPMDNGYMGMG 1491
Query: 1689 -----------------------------------LATGMMGGPAGMFFGSAATPSSMIH 1713
L TGM P G F A + +
Sbjct: 1492 GGGMFMAAGTPSMSPAMTPWDQTSTPMYQNNWSSSLETGMT--PGGPGFSPAGSSEASGT 1549
Query: 1714 NPLQ-TPHNTSLTNATHQSRDKAFAPSELFLSPDSRYP 1750
+P + T + + + PS +SP+ YP
Sbjct: 1550 SPFWMSSGGTPGSPGSPGMATSPYVPSPSSMSPNYNYP 1587
Score = 134 bits (336), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 69/76 (90%), Gaps = 2/76 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM--QDEEDAVDKMEDDMFL 58
MEAISEKINAGFGDDLNCIFNDDNA+KL+LRIRIMN +D KM D+ED VDKMEDDMFL
Sbjct: 1221 MEAISEKINAGFGDDLNCIFNDDNADKLILRIRIMNGEDGKMNGGDDEDTVDKMEDDMFL 1280
Query: 59 RCIEANMLSDMTLQFI 74
RCIEANMLSDMTLQ I
Sbjct: 1281 RCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 116 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 158 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 200 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 242 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 284 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 326 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 368 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 410 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 452 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 494 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 536 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 578 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 620 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 662 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 704 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 746 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 788 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 830 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 872 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 914 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 956 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 998 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1040 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1082 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1124 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1166 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1208 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1250 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1292 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1334 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 71.6 bits (174), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1376 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN +D KM D+ED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1296
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/269 (86%), Positives = 246/269 (91%), Gaps = 3/269 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD+KK
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKK 1292
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT++GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1293 RIMITDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1352
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1353 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1412
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EKCK GIEIP+ M G A
Sbjct: 1413 LMDAASHAEQDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKCKHGIEIPMNIGAGMMGGA 1472
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNA 1727
GMF+GSAATPS M +P TP N T A
Sbjct: 1473 GMFYGSAATPSGM--SPQMTPWNQGGTPA 1499
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS++SK Q+EE+ DKMEDDMFLRC
Sbjct: 1202 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEESKFQEEEEQADKMEDDMFLRC 1261
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1262 IEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
Score = 58.2 bits (139), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNS++SK Q+EE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1233 IRIMNSEESKFQEEEEQADKMEDDMFLRCIEANMLSDMTLQGI 1275
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/267 (85%), Positives = 241/267 (90%), Gaps = 10/267 (3%)
Query: 1460 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1514
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQ
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQ 1294
Query: 1515 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1574
TDSKKRI++TESGEFKAIA+WLLETDGTSLM+VLSERDVDPVRTFSNDICEIF VLGIEA
Sbjct: 1295 TDSKKRIVVTESGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTFSNDICEIFSVLGIEA 1354
Query: 1575 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1634
VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE
Sbjct: 1355 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1414
Query: 1635 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATG 1692
ETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKC+ GIEIP L G
Sbjct: 1415 ETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCRGGIEIPVMLGAG 1474
Query: 1693 MMGGPAGMFFGSAATPSSMIHNPLQTP 1719
MM G GM F +AATP+S +P +TP
Sbjct: 1475 MMLGTGGMMFANAATPTS---SPNRTP 1498
Score = 130 bits (326), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 68/79 (86%), Gaps = 5/79 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM-----QDEEDAVDKMEDD 55
ME I+EKIN GFGDDLNCIFNDDNAE+LVLRIRIMNSD++K DEED VDKMEDD
Sbjct: 1204 MEQIAEKINTGFGDDLNCIFNDDNAERLVLRIRIMNSDENKFGGGGGGDEEDTVDKMEDD 1263
Query: 56 MFLRCIEANMLSDMTLQFI 74
MFLRCIEANMLSDMTLQ I
Sbjct: 1264 MFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 116 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 158 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 200 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 242 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 284 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 326 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 368 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 410 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 452 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 494 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 536 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 578 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 620 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 662 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 704 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 746 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 788 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 830 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 872 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 914 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 956 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 998 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 1040 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 1082 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 1124 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 1166 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 1208 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 1250 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 1292 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 1334 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 5/48 (10%)
Query: 1376 IRIMNSDDSKMQ-----DEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K DEED VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1235 IRIMNSDENKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGI 1282
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/269 (85%), Positives = 241/269 (89%), Gaps = 4/269 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIITE+GEFKAIA+WLLETDGTS+MKVLSERDVD RTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMMGGPA 1698
LMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++ M G
Sbjct: 1433 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGMMGGV 1492
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNA 1727
GMFFGSAATPS +P TP N T
Sbjct: 1493 GMFFGSAATPSM---SPQSTPWNQGATPG 1518
Score = 141 bits (355), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRC
Sbjct: 1222 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 213/229 (93%), Positives = 222/229 (96%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RII+T++GEFKAIA+WLLETDGTS+MKVLSERDVD RTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1688
LMDAA+HAE DPMRGVSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP
Sbjct: 1433 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIP 1481
Score = 140 bits (353), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRC
Sbjct: 1222 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/294 (79%), Positives = 246/294 (83%), Gaps = 9/294 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RII+T++GEFKAIA+WLLETDGTS+MKVLSERDVD RTFSNDICEIF VLGIEAVRKSV
Sbjct: 1312 RIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSNDICEIFSVLGIEAVRKSV 1371
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1372 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1431
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++ G G
Sbjct: 1432 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSMGAGMMGGG 1491
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDK------AFAPSELFLSPDS 1747
MFFGS ATPS +P TP N T A S P SP S
Sbjct: 1492 MFFGSVATPSM---SPHMTPWNQGATPAYVSSWSPGNMLGSGSTPGGPSFSPSS 1542
Score = 140 bits (354), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRC
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRC 1280
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1281 IEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/330 (69%), Positives = 248/330 (75%), Gaps = 37/330 (11%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1313
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITESGEFKAIA+WLLETDGTS+MKVLSERDVDP+RTFSNDICEIF VLGIEAVRKSV
Sbjct: 1314 RIVITESGEFKAIAEWLLETDGTSMMKVLSERDVDPIRTFSNDICEIFSVLGIEAVRKSV 1373
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1374 EKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1433
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL---------- 1689
LMDAAAHAE DPM GVSENIIMGQLPR+GTGCFDLLLD EKCK GIEIP+
Sbjct: 1434 LMDAAAHAEMDPMAGVSENIIMGQLPRLGTGCFDLLLDEEKCKAGIEIPMSVGAGMMGGA 1493
Query: 1690 -------ATGMMGG---------PAGMFFGSAATPSSMI------HNPLQTPHNTSLTNA 1727
AT M PA +GS +P +M+ P +P S +
Sbjct: 1494 GMFFGSAATPSMSPQMTPWNHSTPA---YGSVWSPGNMLGSGMTPGGPSFSPSGASDASG 1550
Query: 1728 THQSRDKAFAPSELFLSPDSRYPYIRELIT 1757
A++P SP S P + I
Sbjct: 1551 LSPGYSPAWSPQP--GSPGSPGPAMSPYIP 1578
Score = 134 bits (337), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 68/74 (91%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS+D Q+EE+ VDKMEDDMFLRC
Sbjct: 1223 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEDKFQQEEEETVDKMEDDMFLRC 1282
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1283 IEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 38/43 (88%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNS+D Q+EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 IRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1296
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/288 (79%), Positives = 238/288 (82%), Gaps = 10/288 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQGIEAI KVYMHLPQ DSK
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQNDSK 1309
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKS
Sbjct: 1310 KRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1369
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1370 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1429
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG--MMGG 1696
VLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GI IP A G +M
Sbjct: 1430 VLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQAHGADIMA- 1488
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLS 1744
+GMFFGSAATP SM TP N T A++P L S
Sbjct: 1489 -SGMFFGSAATP-SMSPGAAMTPWNQGATPYV----GSAWSPHNLMGS 1530
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 66/75 (88%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEE-DAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD K D + VDKM+DDMFLR
Sbjct: 1219 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFGDGADEDVDKMDDDMFLR 1278
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1279 CIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 158
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 200
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 242
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 284
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 326
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 368
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 410
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 452
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 494
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 536
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 578
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 620
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 662
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 704
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 746
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 788
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 830
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 872
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 914
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 956
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 998
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1040
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1082
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1124
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1166
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1208
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1250
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1292
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1334
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1376
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1418
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1250 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1293
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/288 (79%), Positives = 238/288 (82%), Gaps = 10/288 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQGIEAI KVYMHLPQ DSK
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQNDSK 1314
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKS
Sbjct: 1315 KRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1374
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1375 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1434
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG--MMGG 1696
VLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GI IP A G +M
Sbjct: 1435 VLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQAHGADIMA- 1493
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLS 1744
+GMFFGSAATP SM TP N T A++P L S
Sbjct: 1494 -SGMFFGSAATP-SMSPGAAMTPWNQGATPYV----GSAWSPHNLMGS 1535
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 66/75 (88%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEE-DAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD K D + VDKM+DDMFLR
Sbjct: 1224 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFGDGADEDVDKMDDDMFLR 1283
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1284 CIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 158
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 200
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 242
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 284
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 326
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 368
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 410
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 452
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 494
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 536
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 578
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 620
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 662
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 704
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 746
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 788
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 830
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 872
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 914
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 956
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 998
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1040
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1082
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1124
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1166
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1208
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1250
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1292
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1334
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1376
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1418
IRIMNSDD K D D DD MFLRCIEANMLSDMTLQ I
Sbjct: 1255 IRIMNSDDGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGI 1298
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 461 bits (1186), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/295 (74%), Positives = 244/295 (82%), Gaps = 9/295 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQGIEAI KVYMHLP TD+KK
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGIEAITKVYMHLPTTDNKK 1315
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+GEFKAIA+WLLETDGTSLM+VLSERDVDPVRT+SNDICEIF VLGIEAVRK+V
Sbjct: 1316 RIVLTETGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTYSNDICEIFAVLGIEAVRKAV 1375
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1376 EKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1435
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG---G 1696
L+DAA+HAE D ++GVSENIIMGQL RMGTG FDL+LDAEKCK GIEIP++ MMG G
Sbjct: 1436 LLDAASHAEVDYLKGVSENIIMGQLARMGTGAFDLMLDAEKCKYGIEIPMSLPMMGSLCG 1495
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDK----AFAPSELFLSPDS 1747
P G+FFGSAATP + + +P TP T T A P SP +
Sbjct: 1496 P-GVFFGSAATPMAGM-SPQMTPWATGATPAYGSGWSPNVGSGMTPGGAGFSPSA 1548
Score = 140 bits (354), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 69/74 (93%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD K QDEE+ VDKMEDD+FLRC
Sbjct: 1225 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFQDEEEQVDKMEDDVFLRC 1284
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1285 IEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD K QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1298
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/295 (74%), Positives = 244/295 (82%), Gaps = 9/295 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQGIEAI KVYMHLP TD+KK
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGIEAITKVYMHLPTTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+GEFKAIA+WLLETDGTSLM+VLSERDVDPVRT+SNDICEIF VLGIEAVRK+V
Sbjct: 1319 RIVLTETGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTYSNDICEIFAVLGIEAVRKAV 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1379 EKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMG--G 1696
L+DAA+HAE D ++GVSENIIMGQL RMGTGCFDL+LDAEKCK GIEIP+ GMMG G
Sbjct: 1439 LLDAASHAEVDYLKGVSENIIMGQLARMGTGCFDLMLDAEKCKYGIEIPMNLPGMMGPLG 1498
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDS 1747
P G+FFGSAATP + + +P TP T + P SP +
Sbjct: 1499 P-GVFFGSAATPLAGM-SPQMTPWGQGATPSYGSGWSPGLGSGMTPGAAGFSPSA 1551
Score = 139 bits (351), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 69/74 (93%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMN+D SK QDEE+ VDKMEDD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNDGSKYQDEEEQVDKMEDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1288 IEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
Score = 77.0 bits (188), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN+D SK QDEE+ VDKMEDD+FLRCIEANMLSDMTLQ I
Sbjct: 1259 IRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/231 (91%), Positives = 222/231 (96%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTD+KK
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDAKK 1289
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT++GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1290 RIIITDNGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1349
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1350 EKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1409
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA 1690
LMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++
Sbjct: 1410 LMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMS 1460
Score = 140 bits (354), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QDEE+ VDKMEDDMFLRC
Sbjct: 1199 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRC 1258
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1259 IEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QDEE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1230 IRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1272
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/296 (75%), Positives = 242/296 (81%), Gaps = 15/296 (5%)
Query: 1460 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQGIE+I KVYMHLPQ+DSK
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGIESISKVYMHLPQSDSK 1306
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRIIITESGE+KAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKS
Sbjct: 1307 KRIIITESGEYKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1366
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1367 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1426
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
+LMDAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK G+ I M G A
Sbjct: 1427 ILMDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKSGMSI-----MQTGSA 1481
Query: 1699 ------GMFFGSAATPSSMIHNPLQTPHNTSL--TNATHQSRDKAFAPSELFLSPD 1746
GMF+ SA TP+ N + NT + ++A QS P SP
Sbjct: 1482 DNILSMGMFYSSAGTPAQAAANTPWSYSNTPIGSSSAWMQSPASGMTPGGAAFSPS 1537
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 65/75 (86%), Gaps = 2/75 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN-SDDSKMQDEEDAVDKMEDDMFLR 59
ME ISEKI +GFGDDLN IFNDDNAEKLVLR+R+MN S D+K +EED V++MEDDMFLR
Sbjct: 1217 MEQISEKITSGFGDDLNIIFNDDNAEKLVLRVRLMNNSTDNKFAEEED-VERMEDDMFLR 1275
Query: 60 CIEANMLSDMTLQFI 74
C+E N+LSDMTLQ I
Sbjct: 1276 CLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 116 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 158 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 200 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 242 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 284 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 326 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 368 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 410 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 452 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 494 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 536 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 578 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 620 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 662 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 704 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 746 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 788 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 830 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 872 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 914 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 956 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 998 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 1040 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 1082 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 1124 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 1166 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 1208 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 1250 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 1292 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 1334 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
Query: 1376 IRIMN-SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+R+MN S D+K +EED V++MEDDMFLRC+E N+LSDMTLQ I
Sbjct: 1248 VRLMNNSTDNKFAEEED-VERMEDDMFLRCLEGNVLSDMTLQGI 1290
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/232 (91%), Positives = 220/232 (94%), Gaps = 2/232 (0%)
Query: 1460 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTD+
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDA 1311
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
KKRIIIT++GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRK
Sbjct: 1312 KKRIIITDTGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1371
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
SVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL 1689
DVL+DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EK KDGIEIP+
Sbjct: 1432 DVLLDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKAKDGIEIPM 1483
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 68/76 (89%), Gaps = 2/76 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM--QDEEDAVDKMEDDMFL 58
MEAISEKINAGFGDDLNCIFNDDNA+KL+LRIRIMN +D KM D+ED DKMEDDMFL
Sbjct: 1221 MEAISEKINAGFGDDLNCIFNDDNADKLILRIRIMNGEDGKMNGGDDEDTADKMEDDMFL 1280
Query: 59 RCIEANMLSDMTLQFI 74
RCIEANMLSDMTLQ I
Sbjct: 1281 RCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 116 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 158 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 200 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 242 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 284 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 326 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 368 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 410 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 452 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 494 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 536 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 578 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 620 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 662 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 704 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 746 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 788 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 830 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 872 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 914 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 956 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 998 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1040 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1082 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1124 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1166 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1208 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1250 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1292 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1334 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1376 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/232 (91%), Positives = 220/232 (94%), Gaps = 2/232 (0%)
Query: 1460 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTD+
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDA 1311
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
KKRIIIT++GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRK
Sbjct: 1312 KKRIIITDTGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1371
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
SVEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL 1689
DVL+DAAAHAE DPMRGVSENIIMGQLPRMGTGCFDLLLD+EK KDGIEIP+
Sbjct: 1432 DVLLDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKAKDGIEIPM 1483
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 68/76 (89%), Gaps = 2/76 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM--QDEEDAVDKMEDDMFL 58
MEAISEKINAGFGDDLNCIFNDDNA+KL+LRIRIMN +D KM D+ED DKMEDDMFL
Sbjct: 1221 MEAISEKINAGFGDDLNCIFNDDNADKLILRIRIMNGEDGKMNGGDDEDTADKMEDDMFL 1280
Query: 59 RCIEANMLSDMTLQFI 74
RCIEANMLSDMTLQ I
Sbjct: 1281 RCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 116 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 158 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 200 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 242 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 284 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 326 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 368 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 410 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 452 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 494 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 536 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 578 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 620 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 662 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 704 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 746 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 788 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 830 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 872 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 914 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 956 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 998 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1040 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1082 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1124 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1166 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1208 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1250 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1292 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1334 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1376 IRIMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN +D KM D+ED DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGI 1296
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/288 (77%), Positives = 239/288 (82%), Gaps = 14/288 (4%)
Query: 1460 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDS
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDS 1315
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
KK+I++T++G FKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRK
Sbjct: 1316 KKKIVVTDNGRFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1375
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1376 SVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1435
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL------AT 1691
DVLMDAA+HAE DPMRGVSENIIMGQLPRMGTG FDLLLDAEKCK GIEIP
Sbjct: 1436 DVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCKHGIEIPTHLGAGALA 1495
Query: 1692 GMMGGPAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
G G G+F+ +ATPSSM +PH T S A++P
Sbjct: 1496 GAPGLAGGVFYSGSATPSSM------SPHMTPWNQGGTPSYASAWSPG 1537
Score = 126 bits (316), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 66/76 (86%), Gaps = 2/76 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN--SDDSKMQDEEDAVDKMEDDMFL 58
ME I+EKIN GFGDDLNCIFNDDNAEKLVLRIRIMN S+D K D+E+ DKMEDDMFL
Sbjct: 1225 MEQIAEKINLGFGDDLNCIFNDDNAEKLVLRIRIMNSTSEDGKFGDDEEQADKMEDDMFL 1284
Query: 59 RCIEANMLSDMTLQFI 74
RCIEANMLSDMTLQ I
Sbjct: 1285 RCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 116 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 158 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 200 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 242 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 284 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 326 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 368 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 410 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 452 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 494 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 536 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 578 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 620 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 662 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 704 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 746 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 788 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 830 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 872 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 914 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 956 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 998 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1040 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1082 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1124 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1166 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1208 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1250 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1292 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1334 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
Score = 67.0 bits (162), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1376 IRIMNS--DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNS +D K D+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGI 1300
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/288 (79%), Positives = 244/288 (84%), Gaps = 9/288 (3%)
Query: 1460 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDSK
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSK 1307
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKS
Sbjct: 1308 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1367
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1368 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1427
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG--MMGG 1696
VLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GI IP G +M
Sbjct: 1428 VLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQTNGGDIMS- 1486
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLS 1744
+GMFFG+ ATP SM TP N T S A++P + S
Sbjct: 1487 -SGMFFGAVATP-SMSPTGAMTPWNQGATPFVGGS---AWSPPNMLGS 1529
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/75 (82%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM-QDEEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD K + ++ VDKM+DDMFLR
Sbjct: 1217 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFTEGGDEDVDKMDDDMFLR 1276
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1277 CIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD K + ++ VDKM+DDMFLRCIEANMLSDMTLQ I
Sbjct: 1248 IRIMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGI 1291
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/232 (89%), Positives = 219/232 (94%), Gaps = 3/232 (1%)
Query: 1460 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1516
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTD
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTD 1312
Query: 1517 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
SKKRI++TE+GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVR
Sbjct: 1313 SKKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVR 1372
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
KSVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET
Sbjct: 1373 KSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1432
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1688
VDVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDA+KCK GIE+P
Sbjct: 1433 VDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDADKCKAGIELP 1484
Score = 129 bits (325), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/77 (81%), Positives = 67/77 (87%), Gaps = 3/77 (3%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDA---VDKMEDDMF 57
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS+D+K E+ VDKMEDDMF
Sbjct: 1222 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEDNKFTGGENGDEDVDKMEDDMF 1281
Query: 58 LRCIEANMLSDMTLQFI 74
LRCIEANMLSDMTLQ I
Sbjct: 1282 LRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 116 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 158 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 200 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 242 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 284 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 326 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 368 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 410 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 452 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 494 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 536 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 578 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 620 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 662 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 704 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 746 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 788 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 830 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 872 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 914 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 956 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 998 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 1040 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 1082 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 1124 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 1166 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 1208 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 1250 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 1292 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 1334 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
Score = 67.8 bits (164), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 1376 IRIMNSDDSKMQDEEDA---VDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNS+D+K E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1253 IRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGI 1298
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 454 bits (1169), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/286 (78%), Positives = 248/286 (86%), Gaps = 12/286 (4%)
Query: 1460 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1515
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1315
Query: 1516 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1575
DSKKRI++TESGEFKAIA+WLLETDGTSLM+VLSERDVDPVRTFSNDICEIF VLGIEAV
Sbjct: 1316 DSKKRIVVTESGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTFSNDICEIFSVLGIEAV 1375
Query: 1576 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1635
RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE
Sbjct: 1376 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1435
Query: 1636 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGM 1693
TVDVLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLD++KC+ GIEIP L GM
Sbjct: 1436 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDSDKCRGGIEIPVMLGAGM 1495
Query: 1694 MGGPAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
M G GM F +AATP+S +P +TP L +++ + R+ ++P
Sbjct: 1496 MLGTGGMMFANAATPTS---SPYRTPW---LISSSPEYRNMPWSPG 1535
Score = 120 bits (302), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 69/78 (88%), Gaps = 4/78 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM----QDEEDAVDKMEDDM 56
ME I+EKIN GFGDDLNCIFNDDNAE+LVLRIRIMNSD++K DEED+VDKMEDDM
Sbjct: 1225 MEQIAEKINTGFGDDLNCIFNDDNAERLVLRIRIMNSDENKFGGGGGDEEDSVDKMEDDM 1284
Query: 57 FLRCIEANMLSDMTLQFI 74
FLRCIEANMLSDMTLQ I
Sbjct: 1285 FLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 116 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 158 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 200 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 242 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 284 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 326 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 368 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 410 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 452 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 494 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 536 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 578 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 620 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 662 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 704 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 746 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 788 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 830 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 872 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 914 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 956 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 998 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1040 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1082 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1124 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1166 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1208 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1250 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1292 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1334 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 1376 IRIMNSDDSKMQDEED----AVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K +VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1256 IRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGI 1302
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 242/279 (86%), Gaps = 4/279 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTD+KK
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDAKK 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIF VLGIEAVRKSV
Sbjct: 1313 RIVVTETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSV 1372
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1373 EKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1432
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP-LATGMMGGPA 1698
LMDAA+HAE DPMRGVSENII+GQLPRMGTGCFDLLLD +KCK GIEIP G M G
Sbjct: 1433 LMDAASHAELDPMRGVSENIILGQLPRMGTGCFDLLLDKDKCKAGIEIPMSMGGGMMGGV 1492
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA 1737
G+ FGSAATPS M +P +TP N T S A
Sbjct: 1493 GIMFGSAATPSMM--SPSRTPWNMGQTPGYGSSWSPAIG 1529
Score = 127 bits (318), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 68/74 (91%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLR+RIMN+DD K QD+E+ DKMEDDMFLRC
Sbjct: 1223 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRLRIMNNDD-KGQDDEENQDKMEDDMFLRC 1281
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1282 IEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RIMN+DD K QD+E+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1254 LRIMNNDD-KGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGI 1295
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 206/225 (91%), Positives = 216/225 (96%), Gaps = 1/225 (0%)
Query: 1460 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT++K
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAK 1308
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRIIIT+ GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1309 KRIIITDQGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1368
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1369 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1428
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
VL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK
Sbjct: 1429 VLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKH 1473
Score = 134 bits (336), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 69/75 (92%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMN+++SK QD E+ VDKMEDDMFLR
Sbjct: 1218 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQDNDEETVDKMEDDMFLR 1277
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1278 CIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
Score = 71.2 bits (173), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN+++SK QD E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1249 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1292
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/282 (80%), Positives = 244/282 (86%), Gaps = 8/282 (2%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQT++K
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAK 1303
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRIIITE GEFKAIA+WLLETDGTSLMKVLSERDVDP+RTFSNDICEIFQVLGIEAVRKS
Sbjct: 1304 KRIIITEQGEFKAIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKS 1363
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1364 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1423
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
VL+DAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK G+E+ MG A
Sbjct: 1424 VLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVGA 1483
Query: 1699 GMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSE 1740
GM+FG TPS PL TP +T T S ++P +
Sbjct: 1484 GMYFG-VGTPSM---TPLMTPWSTQNTPGYGSS---VWSPGQ 1518
Score = 131 bits (329), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMN+++SK QD +E+ VDKMEDDMFLR
Sbjct: 1213 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQDNDEETVDKMEDDMFLR 1272
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1273 CIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN+++SK QD +E+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 IRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGI 1287
>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
Length = 1705
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/231 (90%), Positives = 216/231 (93%), Gaps = 2/231 (0%)
Query: 1460 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTDS
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDS 1311
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
KKRI+IT++GEFKAIA+WLLETDGT +MKVLSERDVDPVRTFSNDICEIF VLGIEAVRK
Sbjct: 1312 KKRIVITDTGEFKAIAEWLLETDGTCMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1371
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
SVEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV
Sbjct: 1372 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1431
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1688
DVLMDAA+HAE DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK GIE+P
Sbjct: 1432 DVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIELP 1482
Score = 125 bits (315), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 67/76 (88%), Gaps = 2/76 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM--QDEEDAVDKMEDDMFL 58
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD K + E+ VDKMEDDMFL
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFGGEGGEEEVDKMEDDMFL 1280
Query: 59 RCIEANMLSDMTLQFI 74
RCIEANMLSDMTLQ I
Sbjct: 1281 RCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 116 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 158 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 200 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 242 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 284 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 326 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 368 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 410 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 452 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 494 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 536 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 578 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 620 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 662 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 704 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 746 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 788 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 830 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 872 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 914 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 956 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 998 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 1040 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 1082 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 1124 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 1166 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 1208 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 1250 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 1292 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 1334 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 1376 IRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD K E VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1252 IRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGI 1296
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/270 (80%), Positives = 231/270 (85%), Gaps = 16/270 (5%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ DSKK
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQNDSKK 1302
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRT+SNDICEIF VLGIEAVRKSV
Sbjct: 1303 RIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSV 1362
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1363 EKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1422
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAA+HAE DPMRGVSENIIMGQLPRMGT +KCK GIEIP + GMM
Sbjct: 1423 LMDAASHAELDPMRGVSENIIMGQLPRMGT---------DKCKAGIEIPMSIGHGMMSS- 1472
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNA 1727
GM FG+A TPS +P TP N T A
Sbjct: 1473 VGMMFGNAVTPSM---SPQMTPWNQGETPA 1499
Score = 127 bits (318), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 68/74 (91%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLR+RIMN+D+ K+ DEE+ DKMEDDMFLRC
Sbjct: 1213 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRLRIMNNDE-KVTDEEENQDKMEDDMFLRC 1271
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1272 IEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RIMN+D+ K+ DEE+ DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1244 LRIMNNDE-KVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGI 1285
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/283 (76%), Positives = 230/283 (81%), Gaps = 32/283 (11%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD+K
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1310
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI+ITE+GEFKAIA+WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF----- 1425
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--TGMMGG 1696
VSENIIMGQLPR+GTGCFDLLLDAEKCK GIEIP+A G+MG
Sbjct: 1426 ----------------VSENIIMGQLPRIGTGCFDLLLDAEKCKVGIEIPMAVGAGVMGT 1469
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
AGMFFGS ATPS +P T AT + +P+
Sbjct: 1470 -AGMFFGSVATPS-------MSPQMTPWMGATPGYGASSMSPA 1504
Score = 137 bits (345), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K QD EE+ VDKMEDDMFLR
Sbjct: 1220 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDSEEETVDKMEDDMFLR 1279
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1280 CIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K QD EE+ VDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGI 1294
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 435 bits (1118), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/295 (68%), Positives = 237/295 (80%), Gaps = 8/295 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQGIEAI KVYMHLP T+ KK
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI ITE GEFKA+A+W+LETDGT+LMKVLS+RDVDP+RT +NDI E+F +LGIEAVRKS+
Sbjct: 1312 RISITEEGEFKAVAEWILETDGTALMKVLSQRDVDPIRTTTNDIVEVFSILGIEAVRKSI 1371
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN V+ F G YVNYRHL+LLCD MTAKGHLMAITRHGINRQ+TGAL RCSFEETVD+
Sbjct: 1372 EKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGALARCSFEETVDI 1431
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--TGMMGG- 1696
LM+AA+H E DPM+GVSE II+GQL R+GTGCFDLLLDAEKCK G+EIP A GM GG
Sbjct: 1432 LMEAASHGEMDPMKGVSECIIVGQLARIGTGCFDLLLDAEKCKYGMEIPTAIGAGMPGGI 1491
Query: 1697 PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDS 1747
G+FFG+ A+P++ + +P TP T A + P SP +
Sbjct: 1492 GTGLFFGAGASPAAGM-SPQMTPWQQGATPAYASAWSPGVGSGMTPGAAGFSPSA 1545
Score = 139 bits (350), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 77/91 (84%), Gaps = 8/91 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKI AGFGDDLNCIFNDDNAEKLVLRIRIMNSD+SKMQ+EE+ VDKMEDD+FLRC
Sbjct: 1221 MEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDESKMQNEEEIVDKMEDDVFLRC 1280
Query: 61 IEANMLSDMTLQ--------FIRIMNSDDSK 83
IEAN+LSDMTLQ ++ + N++D K
Sbjct: 1281 IEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 167
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 209
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 251
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 293
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 335
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 377
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 419
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 461
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 503
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 545
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 587
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 629
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 671
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 713
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 755
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 797
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 839
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 881
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 923
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 965
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1007
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1049
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1091
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1133
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1175
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1217
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1259
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1301
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1343
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1385
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
Score = 78.6 bits (192), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1427
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/270 (82%), Positives = 239/270 (88%), Gaps = 5/270 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDM-FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSDD+K Q+EE+ + +D FLRCIEANMLSDMTLQGIEAI KVYMHLPQTD+K
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDAK 1290
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI++T++GEFKAIA+WLLETDGTS+MKVLSERDVDPVRTFSNDICEIF VLGIEAVRKS
Sbjct: 1291 KRIVVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1350
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMNTVL FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1351 VEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1410
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT-GMMGGP 1697
VLMDAA+HAE DPMRGVSENIIMGQLPR+GTG FDLLLDAEKCK GIEIP++ M G
Sbjct: 1411 VLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGMMGG 1470
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNA 1727
AGMFFGSAATPS +P TP N T A
Sbjct: 1471 AGMFFGSAATPSM---SPQLTPWNQGATPA 1497
Score = 110 bits (275), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/75 (86%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQ-DEEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD+K Q +EE+ +DKMEDDMFLR
Sbjct: 1200 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQEEEEEMMDKMEDDMFLR 1259
Query: 60 CIEANMLSDMTLQFI 74
CIEANMLSDMTLQ I
Sbjct: 1260 CIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 158
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 200
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 242
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 284
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 326
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 368
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 410
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 452
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 494
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 536
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 578
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 620
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 662
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 704
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 746
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 788
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 830
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 872
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 914
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 956
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 998
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1040
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1082
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1124
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1166
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1208
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1250
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1292
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1334
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1376
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
Score = 49.3 bits (116), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDD-MFLRCIEANMLSDMTLQFI 1418
IRIMNSDD+K Q+EE+ + +D MFLRCIEANMLSDMTLQ I
Sbjct: 1231 IRIMNSDDNKFQEEEEEMMDKMEDDMFLRCIEANMLSDMTLQGI 1274
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/293 (71%), Positives = 237/293 (80%), Gaps = 5/293 (1%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQGIEAI KVYMHLP TD K
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGIEAISKVYMHLPTTDDK 1311
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI++TE+GEFKAI++WLLETDGTSLM+VLSERDVDPVRT+SNDI E+F VLGIEAVRK+
Sbjct: 1312 KRIVVTETGEFKAISEWLLETDGTSLMRVLSERDVDPVRTYSNDIIEVFSVLGIEAVRKA 1371
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1372 VEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1431
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMMGGP 1697
+LMDAA HAEAD ++GVSENII+G+L RMGTG FDL+LDAEKCK GIE+ +A GM G P
Sbjct: 1432 ILMDAAFHAEADKLKGVSENIILGKLARMGTGAFDLMLDAEKCKHGIEVSMAIPGMEGLP 1491
Query: 1698 A-GMFFGSAATPSSMIHNPLQTPHNTSLTNATH-QSRDKAFAPSELFLSPDSR 1748
G+FFGSAATP + +P TP N T A S P SP ++
Sbjct: 1492 GQGVFFGSAATPMGGM-SPQMTPWNAGQTPAYGMWSPTSNMTPGAAGFSPSAQ 1543
Score = 120 bits (301), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 65/75 (86%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNA+KLVLRIRIMN+D K D E+ DKMEDD+FLR
Sbjct: 1221 MEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNDGDKFTDGAEEQADKMEDDVFLR 1280
Query: 60 CIEANMLSDMTLQFI 74
CIE+NMLSDMTLQ I
Sbjct: 1281 CIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1252 IRIMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1295
>gi|194375696|dbj|BAG57192.1| unnamed protein product [Homo sapiens]
Length = 855
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/282 (70%), Positives = 233/282 (82%), Gaps = 8/282 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 217
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 218 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 277
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 278 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 337
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 338 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 397
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
GMFFGSA +P I +P TP N T A A++PS
Sbjct: 398 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAY-----GAWSPS 433
Score = 139 bits (350), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 127 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 186
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 187 IESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 158 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
>gi|119610589|gb|EAW90183.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_c [Homo sapiens]
Length = 1549
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 897
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 898 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 957
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 958 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1017
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1018 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1077
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1078 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1129
Score = 136 bits (343), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 807 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 866
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 867 IESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.9 bits (180), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 428 bits (1101), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/293 (71%), Positives = 238/293 (81%), Gaps = 5/293 (1%)
Query: 1460 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQGIEAI KVYMHLP TD K
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGIEAISKVYMHLPTTDDK 1312
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRI++TE+GEFKAI++WLLETDGTSLM+VLSERDVDPVRT+SNDI E+F VLGIEAVRK+
Sbjct: 1313 KRIVVTETGEFKAISEWLLETDGTSLMRVLSERDVDPVRTYSNDIIEVFSVLGIEAVRKA 1372
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD
Sbjct: 1373 VEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1432
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMMGGP 1697
+LMDAA HAEAD ++GVSENII+G+L RMGTG FDL+LDAEKC+ GIE+ +A GM G P
Sbjct: 1433 ILMDAAFHAEADKLKGVSENIILGKLARMGTGAFDLMLDAEKCRLGIEVSMAMPGMEGMP 1492
Query: 1698 A-GMFFGSAATPSSMIHNPLQTPHNTSLTNATH-QSRDKAFAPSELFLSPDSR 1748
G+FFGSAATP + + +P TP N T A S P SP ++
Sbjct: 1493 GQGVFFGSAATPMAGM-SPQMTPWNAGQTPAYGMWSPTSNMTPGAAGFSPSAQ 1544
Score = 120 bits (301), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 65/75 (86%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD-EEDAVDKMEDDMFLR 59
ME I+EKINAGFGDDLNCIFNDDNA+KLVLRIRIMN+D K D E+ DKMEDD+FLR
Sbjct: 1222 MEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNDGDKFADGAEEQADKMEDDVFLR 1281
Query: 60 CIEANMLSDMTLQFI 74
CIE+NMLSDMTLQ I
Sbjct: 1282 CIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQD-EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN+D K D E+ DKMEDD+FLRCIE+NMLSDMTLQ I
Sbjct: 1253 IRIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGI 1296
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 234/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP ++G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPVLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1285
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1286 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1345
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1346 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1405
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1406 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1465
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1466 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1517
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1195 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1254
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1255 IESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 136 bits (342), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio anubis]
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 136 bits (342), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNLGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 136 bits (342), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
Length = 1801
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1359
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1360 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1419
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1420 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1479
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1480 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1539
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1540 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1591
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1269 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1328
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1329 IESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1300 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1342
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase II subunit A; AltName: Full=DNA-directed RNA
polymerase III largest subunit
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase II subunit A; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName:
Full=RNA-directed RNA polymerase II subunit RPB1
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 136 bits (342), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1323
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1324 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1383
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1384 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1443
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1444 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1503
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1504 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1555
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1233 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1292
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1293 IESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Equus caballus]
Length = 1834
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLT---NATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNVGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 134 bits (338), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
Length = 1935
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1283
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SL++VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1284 KIIITEDGEFKALQEWILETDGVSLIRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1343
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1344 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1403
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1404 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1463
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1464 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1515
Score = 136 bits (342), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1193 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1252
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1253 IESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1224 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1266
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (340), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
Length = 1629
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1328
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1329 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1388
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1389 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1448
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1449 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1508
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1509 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1560
Score = 134 bits (338), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1238 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1297
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1298 IESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1269 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1311
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (339), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis catus]
Length = 1817
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (339), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 235/293 (80%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1317
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1318 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1377
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1378 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1437
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGM-MGGP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP G+ +GGP
Sbjct: 1438 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGVGGP 1497
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P + +P TP N T A S P SP +
Sbjct: 1498 TGMFFGSAPSPMGGM-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1549
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1227 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1286
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1287 IESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1258 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1300
>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca mulatta]
Length = 1658
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 134 bits (337), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (339), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 425 bits (1093), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P + +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGM-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 425 bits (1092), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P + +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGM-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 424 bits (1091), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 232/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+ PM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESYPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 231/293 (78%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 132 bits (333), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KM EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMXQEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KM EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
[Xenopus (Silurana) tropicalis]
Length = 1946
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/282 (70%), Positives = 234/282 (82%), Gaps = 8/282 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1294
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1295 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1354
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1355 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1414
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGM-MGGP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP G+ GGP
Sbjct: 1415 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIPTNIPGLGAGGP 1474
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
GMFFG+A +P + +P TP N T A A++PS
Sbjct: 1475 TGMFFGTAPSPMGGM-SPAMTPWNQGATPAY-----GAWSPS 1510
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS+++KMQDEE+ VDKM+DD+FLRC
Sbjct: 1204 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEENKMQDEEEVVDKMDDDVFLRC 1263
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1264 IESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNS+++KMQDEE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1235 IRIMNSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1277
>gi|355712716|gb|AES04442.1| polymerase II polypeptide A, 220kDa [Mustela putorius furo]
Length = 521
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/282 (70%), Positives = 232/282 (82%), Gaps = 8/282 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYM LPQTD+KK
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMPLPQTDNKK 304
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 305 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 364
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 365 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 424
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 425 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 484
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPS 1739
GMFFGSA +P I +P TP N T A A++PS
Sbjct: 485 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAY-----GAWSPS 520
Score = 133 bits (335), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 214 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 273
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 274 IESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 245 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 287
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/295 (67%), Positives = 235/295 (79%), Gaps = 10/295 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1315
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1316 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1375
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETVDV
Sbjct: 1376 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDV 1435
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG---- 1695
LM+A++H E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP T + G
Sbjct: 1436 LMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP--TNIPGISVA 1493
Query: 1696 GPAGMFFGSAATPSSMIHNPLQTPHNTSLT---NATHQSRDKAFAPSELFLSPDS 1747
GP GMFFGSA +P S + +P TP NT T A S P SP +
Sbjct: 1494 GPTGMFFGSAPSPMSGM-SPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSA 1547
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K Q++E+ VDKM+DD+FLRC
Sbjct: 1225 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRC 1284
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1285 IESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1298
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Oryzias
latipes]
Length = 1599
Score = 418 bits (1075), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/295 (67%), Positives = 233/295 (78%), Gaps = 10/295 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1316
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1317 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1376
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETVDV
Sbjct: 1377 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDV 1436
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG---- 1695
LM+AA+H E DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP T + G
Sbjct: 1437 LMEAASHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP--TNIPGISVA 1494
Query: 1696 GPAGMFFGSAATPSSMIHNPLQTPHNTSLT---NATHQSRDKAFAPSELFLSPDS 1747
GP GMFFGS +P S + +P TP NT T A S P SP +
Sbjct: 1495 GPTGMFFGSVPSPMSGM-SPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSA 1548
Score = 130 bits (327), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K Q++E+ VDKM+DD+FLRC
Sbjct: 1226 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRC 1285
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1286 IESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/307 (65%), Positives = 233/307 (75%), Gaps = 20/307 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKV----------- 1508
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KV
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVSPTPPHPRHHP 1323
Query: 1509 ---YMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICE 1565
YMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI E
Sbjct: 1324 LQVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVE 1383
Query: 1566 IFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1625
IF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDT
Sbjct: 1384 IFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDT 1443
Query: 1626 GALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1685
G LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+
Sbjct: 1444 GPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGM 1503
Query: 1686 EIPLATGMMG--GPAGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSE 1740
EIP +G GP GMFFGSA +P I +P TP N T A S P
Sbjct: 1504 EIPTNIPGLGAAGPTGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGA 1562
Query: 1741 LFLSPDS 1747
SP +
Sbjct: 1563 AGFSPSA 1569
Score = 136 bits (342), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1233 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1292
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1293 IESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1264 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1306
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform 3
[Strongylocentrotus purpuratus]
Length = 1921
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/268 (73%), Positives = 226/268 (84%), Gaps = 4/268 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQGIE I KVYMHLPQ +KK
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQVANKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIITE GEFK IA+W+LETDGT++MKVLS+ +VDPVRTFSNDICEIFQVLGIEAVRKSV
Sbjct: 1319 RIIITEEGEFKHIAEWILETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSV 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E EMN V+ F G YVNYRHLALLCDVMTA+GHLMAITRHGINRQD GALMRCSFEETVD+
Sbjct: 1379 ETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDVGALMRCSFEETVDI 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
L DA AH E D ++GVSENI++G+L +GTG FDLLLDAEKCK G+EIP + G++G P
Sbjct: 1439 LNDAGAHGETDHLKGVSENIMLGKLAGLGTGSFDLLLDAEKCKHGMEIPMGMGAGLVGMP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLT 1725
GM FG+ +PS + +P TP N T
Sbjct: 1499 -GMLFGAMGSPSQSM-SPQMTPWNQGAT 1524
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K QDEE+ VDKMEDD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQDEEEQVDKMEDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/295 (66%), Positives = 233/295 (78%), Gaps = 10/295 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1316
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1317 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1376
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETVDV
Sbjct: 1377 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDV 1436
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG---- 1695
LM+A++H E DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP T + G
Sbjct: 1437 LMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP--TNIPGISVA 1494
Query: 1696 GPAGMFFGSAATPSSMIHNPLQTPHNTSLT---NATHQSRDKAFAPSELFLSPDS 1747
GP GMFFG+ +P S + +P TP NT T A S P SP +
Sbjct: 1495 GPTGMFFGTVPSPMSGM-SPAMTPWNTGATPAYGAWSPSVGSGMTPGGAGFSPSA 1548
Score = 130 bits (327), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFG+DLNCIFNDDNAEKLVLRIRIMNSD++K Q++E+ VDKM+DD+FLRC
Sbjct: 1226 MEQIAEKINAGFGEDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRC 1285
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1286 IESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/297 (69%), Positives = 237/297 (79%), Gaps = 11/297 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQGIE I KVY+HLP+ +SKK
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGIEQISKVYLHLPKEESKK 1319
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIITESGEFKA+ +W+LETDGTSLMKVLSERDVDPVRT SNDICEIFQVLGIEAVRKSV
Sbjct: 1320 RIIITESGEFKALQEWILETDGTSLMKVLSERDVDPVRTTSNDICEIFQVLGIEAVRKSV 1379
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKE+N V+ F G YVNYRHLALLCD+MTAKGHLMAITRHGINRQD GALMRCSFEETVD+
Sbjct: 1380 EKELNHVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHGINRQDVGALMRCSFEETVDI 1439
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP-- 1697
LMDAA HAE D M+GVSENI++GQL ++GTG FDLLLD EKCK G+EIP G+M P
Sbjct: 1440 LMDAAMHAETDHMKGVSENIMLGQLAKIGTGSFDLLLDGEKCKYGMEIPSNIGLM--PGG 1497
Query: 1698 --AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDSR 1748
G+FFGS TP+ + +P TP N T A + P SP ++
Sbjct: 1498 GTTGIFFGSLGTPAPGM-SPQMTPWNQGATPAYGAAWSPGVGSGMTPGAAGFSPSAQ 1553
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K QDEE+ VDKM+DD+FLRC
Sbjct: 1229 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKYQDEEEQVDKMDDDVFLRC 1288
Query: 61 IEANMLSDMTLQFI 74
IEANML+DMTLQ I
Sbjct: 1289 IEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K QDEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1260 IRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGI 1302
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
[Takifugu rubripes]
Length = 1628
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/295 (67%), Positives = 233/295 (78%), Gaps = 10/295 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1316
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1317 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1376
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETVDV
Sbjct: 1377 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDV 1436
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG---- 1695
LM+A++H E DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP T + G
Sbjct: 1437 LMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP--TNIPGISVA 1494
Query: 1696 GPAGMFFGSAATPSSMIHNPLQTPHNTSLT---NATHQSRDKAFAPSELFLSPDS 1747
G GMFFGSA +P S + +P TP NT T A S P SP +
Sbjct: 1495 GSTGMFFGSAPSPMSGM-SPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSA 1548
Score = 130 bits (327), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K Q++E+ VDKM+DD+FLRC
Sbjct: 1226 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRC 1285
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1286 IESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1257 IRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1299
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 230/293 (78%), Gaps = 12/293 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQGIE I KVYMHLPQ +KK
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQVANKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIITE GEFK IA+W+LETDGT++MKVLS+ +VDPVRTFSNDICEIFQVLGIEAVRKSV
Sbjct: 1319 RIIITEEGEFKHIAEWILETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSV 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E EMN V+ F G YVNYRHLALLCDVMTA+GHLMAITRHGINRQD GALMRCSFEETVD+
Sbjct: 1379 ETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDVGALMRCSFEETVDI 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
L DA AH E D ++GVSENI++G+L +GTG FDLLLDAEKCK G+EIP+ G AG
Sbjct: 1439 LNDAGAHGETDHLKGVSENIMLGKLAGLGTGSFDLLLDAEKCKHGMEIPMGMG-----AG 1493
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSRYPYI 1752
+ GS TP P +P N+ T + + A++P + PYI
Sbjct: 1494 L--GSGMTPG----GPGFSPANSESTGFS-PAYSPAWSPQPQSPGSPANSPYI 1539
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K QDEE+ VDKMEDD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQDEEEQVDKMEDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K QDEE+ VDKMEDD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGI 1301
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
Length = 1921
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/291 (67%), Positives = 231/291 (79%), Gaps = 8/291 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1313
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1314 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1373
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHGINRQDTG LM+CSFEETVDV
Sbjct: 1374 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDV 1433
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+A++H E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP T + G G
Sbjct: 1434 LMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP--TNIPGITTG 1491
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLT---NATHQSRDKAFAPSELFLSPDS 1747
MFFGSA +P S + +P TP NT T A S P SP +
Sbjct: 1492 MFFGSAPSPMSGM-SPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSA 1541
Score = 126 bits (317), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 68/74 (91%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++K Q E+ VDKM+DD+FLRC
Sbjct: 1225 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQ--EEVVDKMDDDVFLRC 1282
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1283 IESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
Score = 64.3 bits (155), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++K Q+E VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1256 IRIMNSDENKFQEE--VVDKMDDDVFLRCIESNMLTDMTLQGI 1296
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/296 (65%), Positives = 235/296 (79%), Gaps = 9/296 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQGIE I KVYMHLPQ D+KK
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGIEQIAKVYMHLPQQDTKK 1314
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT+ GE+KA+ +W+LETDG +LMKVLSE++VDPVRT SNDI EIFQ+LGIEAVRK++
Sbjct: 1315 RIIITDEGEYKALQEWILETDGVNLMKVLSEKNVDPVRTTSNDIVEIFQILGIEAVRKAI 1374
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN V+ F G YVNYRHLALLCD+MT KGHLMAITRHGINRQ+ G LM+CSFEETVD+
Sbjct: 1375 EKEMNHVISFDGSYVNYRHLALLCDIMTQKGHLMAITRHGINRQEVGPLMKCSFEETVDI 1434
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP---LATGMMGG 1696
LM++A+H+E D M GVSENI++GQL R+GTG FDL+LDAEKCK G+EIP + G+M G
Sbjct: 1435 LMESASHSETDFMWGVSENIMLGQLARIGTGSFDLMLDAEKCKYGMEIPTNLVGGGLMAG 1494
Query: 1697 PA-GMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDS 1747
P GMFFG+A +P++ + +P TP T A + P SP +
Sbjct: 1495 PGPGMFFGNAGSPTASM-SPQMTPWQQVGTPAYGGAWSPGLGSGMTPGAAGFSPSA 1549
Score = 136 bits (343), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME+I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMN+DDSKM DEE+ VDKM+DD+FLRC
Sbjct: 1224 MESIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNDDSKMMDEEEMVDKMDDDVFLRC 1283
Query: 61 IEANMLSDMTLQFI 74
IEANML+DMTLQ I
Sbjct: 1284 IEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN+DDSKM DEE+ VDKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGI 1297
>gi|449687727|ref|XP_002164354.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
1, partial [Hydra magnipapillata]
Length = 1595
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/298 (65%), Positives = 232/298 (77%), Gaps = 11/298 (3%)
Query: 1460 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQGIE+I KVYMHLP +SK
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGIESIAKVYMHLPSEESK 873
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR+I GEFK + +W+LETDG LMKVLS++D+DPVRT SNDICEIF +LGIEAVRKS
Sbjct: 874 KRVIFNAEGEFKHLQEWILETDGNGLMKVLSQKDIDPVRTTSNDICEIFSILGIEAVRKS 933
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+EKEM+ V+ F G YVNYRHL+LLCD+MT+KGHLMAITRHGINRQ+ G LMRCSFEETVD
Sbjct: 934 IEKEMDHVISFDGSYVNYRHLSLLCDIMTSKGHLMAITRHGINRQEVGCLMRCSFEETVD 993
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL----ATGMM 1694
VL++AA HAEAD +RGVSENII+GQLP +GTGCF+L+LDAEKCK+G+EIPL GMM
Sbjct: 994 VLVEAAFHAEADNLRGVSENIILGQLPPIGTGCFNLMLDAEKCKEGMEIPLNIGEGHGMM 1053
Query: 1695 GGPAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDSR 1748
G G+FFGSAA+PS+ + +P TP N T A P SP +
Sbjct: 1054 PG-GGVFFGSAASPSNAM-SPQMTPWNQGHTPGYGDGWSPALGSGMTPGAASFSPSAH 1109
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS-DDSKMQDEEDAVDKMEDDMFLR 59
ME I+EKIN GFGDDLNCI+NDDNAEKLVLRIRIM S DDSK ++E+ +DKMEDD+FLR
Sbjct: 783 MEQIAEKINQGFGDDLNCIYNDDNAEKLVLRIRIMGSGDDSKNMEDEEQLDKMEDDVFLR 842
Query: 60 CIEANMLSDMTLQFI 74
CIEANML+DMTLQ I
Sbjct: 843 CIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 116 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 158 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 200 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 242 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 284 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 326 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 368 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 410 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 452 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 494 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 536 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 578 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 620 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 662 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 704 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 746 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 788 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 830 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 872 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 914 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 956 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 998 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 1040 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 1082 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 1124 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 1166 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 1208 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 1250 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 1292 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 1334 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 1376 IRIMNS-DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIM S DDSK ++E+ +DKMEDD+FLRCIEANML+DMTLQ I
Sbjct: 814 IRIMGSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGI 857
>gi|119610588|gb|EAW90182.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_b [Homo sapiens]
Length = 1511
Score = 405 bits (1041), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/254 (73%), Positives = 220/254 (86%), Gaps = 3/254 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 897
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 898 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 957
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 958 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1017
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G G
Sbjct: 1018 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGR 1077
Query: 1698 AGMFFGSAA-TPSS 1710
+GM G+A +PS+
Sbjct: 1078 SGMTPGAAGFSPSA 1091
Score = 136 bits (342), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 807 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 866
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 867 IESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 838 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 880
>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/263 (71%), Positives = 222/263 (84%), Gaps = 3/263 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQG+E+I KVYMHLP TD KK
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI +T SGEFKAI +W+LETDGT L++VLSE+DVDP+RT +NDI EIF LG+EAVRKS+
Sbjct: 1316 RIELTPSGEFKAIQEWILETDGTGLIQVLSEKDVDPIRTTTNDIVEIFSCLGVEAVRKSI 1375
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEM V+ F G YVNYRHLALLCD+MTAKGHLMAITRHGINRQ+TG L RCSFEETVD+
Sbjct: 1376 EKEMFNVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHGINRQETGCLARCSFEETVDI 1435
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AA+H E DPM+GVSENI++GQL R+GTGCFDLLLDAEKCK G+EIP G G AG
Sbjct: 1436 LMEAASHNEVDPMKGVSENIMLGQLARIGTGCFDLLLDAEKCKHGMEIPTHIGAGMG-AG 1494
Query: 1700 MFFGSAA-TPSSMIHNPLQTPHN 1721
MFFG+ A +PSS + +P TP
Sbjct: 1495 MFFGAGASSPSSNMGSPQMTPWG 1517
Score = 124 bits (312), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 73/91 (80%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKI AGFGDDLNCIFNDDNAEKLVLRIRIMN+D++K DEE VDKMEDD+FLRC
Sbjct: 1226 MEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNTDENKADDEEQ-VDKMEDDVFLRC 1284
Query: 61 IEANMLSDMTLQ--------FIRIMNSDDSK 83
IEANML+DM+LQ ++ + +DD K
Sbjct: 1285 IEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 167
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 209
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 251
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 293
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 335
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 377
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 419
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 461
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 503
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 545
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 587
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 629
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 671
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 713
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 755
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 797
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 839
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 881
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 923
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 965
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1007
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1049
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1091
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1133
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1175
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1217
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1259
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1301
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1343
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1385
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
Score = 64.3 bits (155), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 9/60 (15%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1427
IRIMN+D++K DEE VDKMEDD+FLRCIEANML+DM+LQ ++ + +DD K
Sbjct: 1257 IRIMNTDENKADDEEQ-VDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTTDDKK 1315
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/254 (73%), Positives = 220/254 (86%), Gaps = 3/254 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1285
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1286 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1345
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1346 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1405
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G G
Sbjct: 1406 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGR 1465
Query: 1698 AGMFFGSAA-TPSS 1710
+GM G+A +PS+
Sbjct: 1466 SGMTPGAAGFSPSA 1479
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1195 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1254
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1255 IESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1226 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1268
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/254 (73%), Positives = 220/254 (86%), Gaps = 3/254 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G G
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGR 1498
Query: 1698 AGMFFGSAA-TPSS 1710
+GM G+A +PS+
Sbjct: 1499 SGMTPGAAGFSPSA 1512
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/254 (73%), Positives = 220/254 (86%), Gaps = 3/254 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G G
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGR 1498
Query: 1698 AGMFFGSAA-TPSS 1710
+GM G+A +PS+
Sbjct: 1499 SGMTPGAAGFSPSA 1512
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|149053073|gb|EDM04890.1| rCG34223 [Rattus norvegicus]
Length = 568
Score = 403 bits (1035), Expect = e-109, Method: Composition-based stats.
Identities = 199/286 (69%), Positives = 235/286 (82%), Gaps = 3/286 (1%)
Query: 1444 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1503
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIE 201
Query: 1504 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1563
I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI
Sbjct: 202 QISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDI 261
Query: 1564 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1623
EIF VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQ
Sbjct: 262 VEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQ 321
Query: 1624 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
DTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK
Sbjct: 322 DTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKY 381
Query: 1684 GIEIPLATGMMG--GPAGMFFGSAATPSSMIHNPLQTPHNTSLTNA 1727
G+EIP +G GP GMFFGSA +P I +P TP N T A
Sbjct: 382 GMEIPTNIPGLGAAGPTGMFFGSAPSPMGGI-SPAMTPWNQGATPA 426
Score = 134 bits (337), Expect = 5e-28, Method: Composition-based stats.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 127 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 186
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 187 IESNMLTDMTLQGI 200
Score = 76.3 bits (186), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 18/150 (12%)
Query: 1360 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1419
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIE 201
Query: 1420 IMNSDDSKM--QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAV 1477
++ + D + + ED F + ++ +L + +R+++ D V
Sbjct: 202 QISKVYMHLPQTDNKKKIIITEDGEF-KALQEWILETDGVSLMRVLSEKD---------V 251
Query: 1478 DKMEDDMFLRCIEANMLSDMTLQGIEAIGK 1507
D +R +++ T+ GIEA+ K
Sbjct: 252 DP------VRTTSNDIVEIFTVLGIEAVRK 275
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 100 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 142 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 184 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 226 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 268 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 310 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 352 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 394 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 436 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 478 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 520 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 562 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 604 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 646 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 688 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 730 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 772 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 814 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 856 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 898 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 940 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 982 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 1024 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 1066 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 1108 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 1150 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 1192 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 1234 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 1276 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
Score = 75.5 bits (184), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 1318 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
L CI + ++ + IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 142 LNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 200
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/254 (73%), Positives = 220/254 (86%), Gaps = 3/254 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G G
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGR 1498
Query: 1698 AGMFFGSAA-TPSS 1710
+GM G+A +PS+
Sbjct: 1499 SGMTPGAAGFSPSA 1512
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/254 (73%), Positives = 220/254 (86%), Gaps = 3/254 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G G
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGR 1498
Query: 1698 AGMFFGSAA-TPSS 1710
+GM G+A +PS+
Sbjct: 1499 SGMTPGAAGFSPSA 1512
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 402 bits (1032), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/291 (64%), Positives = 232/291 (79%), Gaps = 10/291 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KK
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 1311 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+
Sbjct: 1371 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP M GG
Sbjct: 1431 LMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGG--- 1487
Query: 1700 MFFGS-AATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSRY 1749
F+GS A +PS+ +P +P N+ +T T+ A++P+ +SP + +
Sbjct: 1488 -FYGSFAGSPSNREFSPAHSPWNSGVT-PTYAG--AAWSPTTGGMSPGAGF 1534
Score = 101 bits (252), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 10/91 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI D + Q+E+ VDKMEDD+FLRC
Sbjct: 1222 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQ--VDKMEDDVFLRC 1279
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 1280 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
>gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1745
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 232/309 (75%), Gaps = 38/309 (12%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK+
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKK 1206
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF------------- 1567
IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF
Sbjct: 1207 IIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVIQSLSCLIGLR 1266
Query: 1568 -------------QVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1614
QVLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMA
Sbjct: 1267 ELFDGDRVPSSGFQVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMA 1326
Query: 1615 ITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
ITRHGINRQDTG LM+CSFEETVDVLM+A++H E DPM+GVSENI++GQL GTGCFDL
Sbjct: 1327 ITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDL 1386
Query: 1675 LLDAEKCKDGIEIPLATGMMG----GPAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQ 1730
LLDAEKCK G+EIP T + G G GMFFGSA +P S + +P TP NT T A
Sbjct: 1387 LLDAEKCKYGMEIP--TNIPGISVAGSTGMFFGSAPSPMSGM-SPAMTPWNTGATPAY-- 1441
Query: 1731 SRDKAFAPS 1739
A++PS
Sbjct: 1442 ---GAWSPS 1447
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 33 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 74
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 75 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 116
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 117 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 159 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 201 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 243 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 285 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 327 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 369 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 411 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 453 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 495 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 537 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 579 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 621 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 663 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 705 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 747 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 789 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 831 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 873 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 915 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 957 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 999 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 1041 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 1083 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 1125 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 1167 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 1209 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 1251 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 1293 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 1335 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 1377 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
RIMNSD+ K Q++E+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1147 RIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1188
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 399 bits (1024), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/291 (64%), Positives = 231/291 (79%), Gaps = 10/291 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KK
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 1314 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1373
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMA +RHGINRQ+ GALMRCSFEETVD+
Sbjct: 1374 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAYSRHGINRQEVGALMRCSFEETVDI 1433
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP M GG
Sbjct: 1434 LMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGG--- 1490
Query: 1700 MFFGS-AATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSRY 1749
F+GS A +PS+ +P +P N+ +T T+ A++P+ +SP + +
Sbjct: 1491 -FYGSFAGSPSNREFSPAHSPWNSGVT-PTYAG--AAWSPTTGGMSPGAGF 1537
Score = 101 bits (252), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 10/91 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI D + Q+E+ VDKMEDD+FLRC
Sbjct: 1225 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQ--VDKMEDDVFLRC 1282
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 1283 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1256 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1313
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/273 (73%), Positives = 229/273 (83%), Gaps = 8/273 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQGIE+I KVYM+LP D KK
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGIESISKVYMNLPHEDKKK 1313
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE GEFKAI +WLLETDG SLM+VLSERDVDPVRT SNDICEIF VLGIEAVRK+V
Sbjct: 1314 RIVVTEQGEFKAIQEWLLETDGVSLMRVLSERDVDPVRTTSNDICEIFSVLGIEAVRKAV 1373
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EM+ V+ F G YVNYRHLALLCD+MT +GHLMAITRHGINRQ+ GALMR SFEETVDV
Sbjct: 1374 EREMDHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINRQEVGALMRSSFEETVDV 1433
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP---LATGMMGG 1696
LMDAAAHAE D +RGVSE IIMG+LPR+GTG FDL+LDAEKCK G+EIP + GM G
Sbjct: 1434 LMDAAAHAETDYLRGVSECIIMGKLPRIGTGSFDLMLDAEKCKHGMEIPTNIMGPGMGGA 1493
Query: 1697 PA--GMFFGSAATPSSMIHNPLQTPHNTSLTNA 1727
A G+FFG+A +PS+M +P TP N T A
Sbjct: 1494 MAAIGVFFGAAGSPSAM--SPQMTPWNMGATPA 1524
Score = 111 bits (277), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 68/74 (91%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKIN GFGDDLNCIFNDDNAEKLVLRIRIMN+DD KMQD+ED DKM+DD+FLRC
Sbjct: 1224 MEQISEKINLGFGDDLNCIFNDDNAEKLVLRIRIMNNDDGKMQDDEDV-DKMDDDVFLRC 1282
Query: 61 IEANMLSDMTLQFI 74
IEANML+DMTLQ I
Sbjct: 1283 IEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN+DD KMQD+ED DKM+DD+FLRCIEANML+DMTLQ I
Sbjct: 1255 IRIMNNDDGKMQDDEDV-DKMDDDVFLRCIEANMLTDMTLQGI 1296
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
Length = 1853
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/285 (65%), Positives = 224/285 (78%), Gaps = 6/285 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KK
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 1312 RIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSI 1371
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+
Sbjct: 1372 EKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1431
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP +MG AG
Sbjct: 1432 LMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNV-VMG--AG 1488
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTN--ATHQSRDKAFAPSELF 1742
++ G A S +P +P N+ +T + S +PS F
Sbjct: 1489 IYGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSPSAGF 1533
Score = 99.4 bits (246), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG D++ I+ DDNAEKLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 1222 MEMIADRIHGGFGQDVHTIYTDDNAEKLVFRLRIAG-EDKGAEGQEEQVDKMEDDVFLRC 1280
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 1281 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
Length = 1713
Score = 395 bits (1016), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/284 (65%), Positives = 226/284 (79%), Gaps = 7/284 (2%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ PQTD KKRIIIT
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPQTDDKKRIIIT 1335
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKA+ADW+LETDGT+L++VLSE+ +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 1336 PEGGFKAVADWILETDGTALLRVLSEQQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMD 1395
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+LM+A+
Sbjct: 1396 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAS 1455
Query: 1645 AHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGS 1704
HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP +MG AG +
Sbjct: 1456 VHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNV-VMG--AGFYGNF 1512
Query: 1705 AATPSSMIHNPLQTPHNTSLT---NATHQSRDKAFAPSELFLSP 1745
A +PS+ ++P +P N+ +T N S +PS F SP
Sbjct: 1513 AGSPSNREYSPSHSPWNSGVTPSYNGAAWSPAGNMSPSAGF-SP 1555
Score = 98.6 bits (244), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 1241 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG-EDKGAEGQEEQVDKMEDDVFLRC 1299
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD+TLQ I
Sbjct: 1300 IEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 1276 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313
>gi|109119895|ref|XP_001088659.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
mulatta]
Length = 259
Score = 392 bits (1007), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/262 (70%), Positives = 214/262 (81%), Gaps = 8/262 (3%)
Query: 1480 MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLET 1539
M+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK+IIITE GEFKA+ +W+LET
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILET 60
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
DG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++E+E+ V+ F G YVNYRHL
Sbjct: 61 DGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHL 120
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AAAH E+DPM+GVSENI
Sbjct: 121 ALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENI 180
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GPAGMFFGSAATPSSMIHNPLQ 1717
++GQL GTGCFDLLLDAEKCK G+EIP +G GP GMFFGSA +P I +P
Sbjct: 181 MLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGI-SPAM 239
Query: 1718 TPHNTSLTNATHQSRDKAFAPS 1739
TP N T A A++PS
Sbjct: 240 TPWNQGATPAY-----GAWSPS 256
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 52 MEDDMFLRCIEANMLSDMTLQFI 74
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 94 MEDDMFLRCIEANMLSDMTLQFI 116
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 136 MEDDMFLRCIEANMLSDMTLQFI 158
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 178 MEDDMFLRCIEANMLSDMTLQFI 200
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 220 MEDDMFLRCIEANMLSDMTLQFI 242
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 262 MEDDMFLRCIEANMLSDMTLQFI 284
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 304 MEDDMFLRCIEANMLSDMTLQFI 326
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 346 MEDDMFLRCIEANMLSDMTLQFI 368
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 388 MEDDMFLRCIEANMLSDMTLQFI 410
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 430 MEDDMFLRCIEANMLSDMTLQFI 452
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 472 MEDDMFLRCIEANMLSDMTLQFI 494
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 514 MEDDMFLRCIEANMLSDMTLQFI 536
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 556 MEDDMFLRCIEANMLSDMTLQFI 578
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 598 MEDDMFLRCIEANMLSDMTLQFI 620
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 640 MEDDMFLRCIEANMLSDMTLQFI 662
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 682 MEDDMFLRCIEANMLSDMTLQFI 704
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 724 MEDDMFLRCIEANMLSDMTLQFI 746
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 766 MEDDMFLRCIEANMLSDMTLQFI 788
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 808 MEDDMFLRCIEANMLSDMTLQFI 830
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 850 MEDDMFLRCIEANMLSDMTLQFI 872
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 892 MEDDMFLRCIEANMLSDMTLQFI 914
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 934 MEDDMFLRCIEANMLSDMTLQFI 956
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 976 MEDDMFLRCIEANMLSDMTLQFI 998
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1018 MEDDMFLRCIEANMLSDMTLQFI 1040
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1060 MEDDMFLRCIEANMLSDMTLQFI 1082
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1102 MEDDMFLRCIEANMLSDMTLQFI 1124
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1144 MEDDMFLRCIEANMLSDMTLQFI 1166
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1186 MEDDMFLRCIEANMLSDMTLQFI 1208
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1228 MEDDMFLRCIEANMLSDMTLQFI 1250
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1270 MEDDMFLRCIEANMLSDMTLQFI 1292
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1312 MEDDMFLRCIEANMLSDMTLQFI 1334
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1354 MEDDMFLRCIEANMLSDMTLQFI 1376
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
Score = 42.4 bits (98), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 1396 MEDDMFLRCIEANMLSDMTLQFI 1418
M+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1 MDDDVFLRCIESNMLTDMTLQGI 23
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/310 (61%), Positives = 230/310 (74%), Gaps = 24/310 (7%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQGIE I KVYMHLP DSKK
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGIEQISKVYMHLPLQDSKK 1297
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+II E GE+KAI +W+LETDG +L KVLS +DVD V++ SNDI EIF VLGIEAVRK+V
Sbjct: 1298 RMIINEEGEYKAIQEWILETDGVNLQKVLSVKDVDAVKSTSNDIVEIFSVLGIEAVRKAV 1357
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN V+ F G YVNYRHLALLCDVMT +GHLMAITRHGINRQ+ GALMRCSFEETVD+
Sbjct: 1358 EKEMNHVISFDGSYVNYRHLALLCDVMTCRGHLMAITRHGINRQEVGALMRCSFEETVDI 1417
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL---ATGMMGG 1696
LMDAA H+E D +RGVSENI++GQL ++GTGCFDLLLD EKCKDG+EIP GM+ G
Sbjct: 1418 LMDAAFHSETDYLRGVSENIMLGQLSKIGTGCFDLLLDPEKCKDGMEIPANVPVAGMING 1477
Query: 1697 -PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSR------------DKAFAP---SE 1740
AG+F+G A S P TP ++SLT +++ F+P SE
Sbjct: 1478 VGAGVFYGDGAGMS-----PQMTPWDSSLTTPSYEGPYTPGMGGGMTPGAAGFSPSGASE 1532
Query: 1741 LFLSPDSRYP 1750
SP S P
Sbjct: 1533 PSFSPASYSP 1542
Score = 116 bits (290), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 66/74 (89%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFG+DLNCIFNDDNAEKL+LRIRI+N+D+ + D ++ D+M+DD+FLRC
Sbjct: 1207 MEQIAEKINAGFGEDLNCIFNDDNAEKLILRIRIVNNDNKEGVDRDEQWDRMDDDVFLRC 1266
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSDMTLQ I
Sbjct: 1267 IESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRI+N+D+ + D ++ D+M+DD+FLRCIE+NMLSDMTLQ I
Sbjct: 1238 IRIVNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGI 1280
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 378 bits (970), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/228 (75%), Positives = 201/228 (88%), Gaps = 1/228 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQGIE+I KVYMH P TD KK
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGIESITKVYMHKPTTDDKK 1309
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L KVLSE++VD VRT SNDICEIF+VLGIEAVRK++
Sbjct: 1310 RVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDSVRTTSNDICEIFEVLGIEAVRKAI 1369
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+
Sbjct: 1370 EREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1429
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 1687
LM+AAAHAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK G+EI
Sbjct: 1430 LMEAAAHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLGMEI 1477
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI++KI+ GFGDDLN I+ DDNAEKLV R+RI N D K +EE+ VDKMEDD+FLRC
Sbjct: 1220 MEAIADKIHHGFGDDLNVIYTDDNAEKLVFRLRITNQDGDK-GNEEEQVDKMEDDVFLRC 1278
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 1279 IESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K +EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1251 LRITNQDGDK-GNEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 1292
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 378 bits (970), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/290 (62%), Positives = 228/290 (78%), Gaps = 7/290 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KK
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT G FKA+ADW+LETDGT+L++VL+ER +DPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 1312 RIIITPEGGFKAVADWILETDGTALLRVLAERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1371
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+
Sbjct: 1372 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1431
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP M AG
Sbjct: 1432 LMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMG---AG 1488
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSRY 1749
+ G A +P++ +P +P N+ +T + + +++P +SP + +
Sbjct: 1489 YYGGFAGSPNAHEFSPSHSPWNSGVTPSYGGA---SWSPGAGGMSPSAGF 1535
Score = 98.2 bits (243), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI +D +E+ VDKMEDD+FLRC
Sbjct: 1222 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAG-EDKGADTQEEQVDKMEDDVFLRC 1280
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 1281 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+RI +D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
>gi|316997013|dbj|BAJ52634.1| RNA polymerase II largest subunit [Ephydatia fluviatilis]
Length = 1146
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/328 (57%), Positives = 224/328 (68%), Gaps = 26/328 (7%)
Query: 1460 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQGIE I KVYMH P DSK
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGIEQIAKVYMHYPTQDSK 820
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRII+ + G+FKAI +W+LETDG +L++VLSE VDPVRT SN I EIF VLGIEAVRK+
Sbjct: 821 KRIIVNDEGQFKAIQEWILETDGVNLIRVLSEPSVDPVRTTSNHIVEIFSVLGIEAVRKA 880
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
VEKE++ V+ F G YVNYRHLALLCD+MT +GHLMAITRHG+NRQD GALMRCSFEETVD
Sbjct: 881 VEKELHHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGVNRQDVGALMRCSFEETVD 940
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
+L++AA H E D MRGVSE I++GQ+ + GTG DLLLDAEKCK G+EIP TG+ GP
Sbjct: 941 ILVEAAVHCEVDKMRGVSECIMLGQIHKGGTGAVDLLLDAEKCKHGMEIPTNTGLGVGP- 999
Query: 1699 GMFFGSAATPS---SMIHNPL---QTP-----HNTSLTNATHQSRDKAFAPS-------- 1739
F+GS TP+ M P QTP S+ S AF+P+
Sbjct: 1000 --FYGSGMTPTGAGGMAMTPWLGAQTPTLEPWTGPSMGPGMTPSAGAAFSPAASETSGFS 1057
Query: 1740 ---ELFLSPDSRYPYIRELITLCSHSSF 1764
SP+ PY S +
Sbjct: 1058 PSYSPGWSPNPASPYAPRSPGFPSSPGY 1085
Score = 107 bits (267), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 63/75 (84%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
ME I+EK+++ FG+DLNC++ DDN+EKL LRIR+++SDD K Q E E+ VDKMEDDMFLR
Sbjct: 730 MEQIAEKVSSHFGEDLNCMYTDDNSEKLALRIRVLSSDDGKTQGEDEEMVDKMEDDMFLR 789
Query: 60 CIEANMLSDMTLQFI 74
C+E N+LSDM LQ I
Sbjct: 790 CLETNLLSDMALQGI 804
Score = 63.9 bits (154), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 19/136 (13%)
Query: 1376 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEE 1432
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I + QD +
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGIEQIAKVYMHYPTQDSK 820
Query: 1433 DAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEAN 1492
+ ++ F + I+ +L + IR+++ E +VD +R +
Sbjct: 821 KRIIVNDEGQF-KAIQEWILETDGVNLIRVLS---------EPSVDP------VRTTSNH 864
Query: 1493 MLSDMTLQGIEAIGKV 1508
++ ++ GIEA+ K
Sbjct: 865 IVEIFSVLGIEAVRKA 880
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IR+++SDD K Q E E+ VDKMEDDMFLRC+E N+LSDM LQ I
Sbjct: 761 IRVLSSDDGKTQGEDEEMVDKMEDDMFLRCLETNLLSDMALQGI 804
>gi|402590450|gb|EJW84380.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 1251
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/293 (63%), Positives = 227/293 (77%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKK 690
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L KVLSE++VDP+RT SNDICEIF+VLGIEAVRK++
Sbjct: 691 RVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPIRTTSNDICEIFEVLGIEAVRKAI 750
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+
Sbjct: 751 EREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 810
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK +EI G++G G
Sbjct: 811 LMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLAMEIQTGGGLLGT-GG 869
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDSR 1748
M+FG++ +P+S +P QTP N T A + A P SP
Sbjct: 870 MYFGNSMSPASSAMSPAQTPWNAGTTPAYGAAWSPATGSGMTPGGAGFSPSGH 922
Score = 103 bits (256), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI++KI+ GFGDDLN I+ DDNAEKLV R+RI N + K +E++ V++MEDD+FLRC
Sbjct: 601 MEAIADKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQEGDK-GNEDEQVERMEDDVFLRC 659
Query: 61 IEANMLSDMTLQFI 74
IE NMLSD+TLQ I
Sbjct: 660 IETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 632 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 673
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/293 (64%), Positives = 227/293 (77%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKK 1382
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L KVLSE++VDP+RT SNDICEIF+VLGIEAVRK++
Sbjct: 1383 RVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPIRTTSNDICEIFEVLGIEAVRKAI 1442
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+
Sbjct: 1443 EREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1502
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK +EI G++G G
Sbjct: 1503 LMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLAMEIQTGGGLLGT-GG 1561
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDSR 1748
M+FGS+ +P+S +P QTP N T A + A P SP
Sbjct: 1562 MYFGSSMSPASSAMSPAQTPWNAGTTPAYGAAWSPATGSGMTPGGAGFSPSGH 1614
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI++KI+ GFGDDLN I+ DDNAEKLV R+RI N + K +E++ V++MEDD+FLRC
Sbjct: 1293 MEAIADKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQEGDK-GNEDEQVERMEDDVFLRC 1351
Query: 61 IEANMLSDMTLQFI 74
IE NMLSD+TLQ I
Sbjct: 1352 IETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1324 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1365
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/312 (59%), Positives = 223/312 (71%), Gaps = 21/312 (6%)
Query: 1460 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQGIE I KVYMH P DS
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGIEQISKVYMHYPTQDS 1312
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
KKRI+I+E GEFKAI +W+LETDG +L++VLSE VDPVRT SN I EIFQVLGIEAVRK
Sbjct: 1313 KKRIVISEQGEFKAIQEWILETDGVNLLRVLSEPSVDPVRTTSNHIVEIFQVLGIEAVRK 1372
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++EKE+N V+ F G YVNYRHLALLCD+MT +GHLMA+TRHG+NRQ+ GALMRCSFEETV
Sbjct: 1373 ALEKEINHVISFDGSYVNYRHLALLCDIMTCRGHLMAVTRHGVNRQEVGALMRCSFEETV 1432
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMM-- 1694
D+LM+AA HAE D M+GVSE I++GQLP+ GTG F+L+LDAEKCK +EI TGMM
Sbjct: 1433 DILMEAAGHAEVDKMQGVSECIMLGQLPKGGTGAFELMLDAEKCKSAMEISGTMTGMMIP 1492
Query: 1695 -------GGPAG------MFFGSAATPSSM-IHNPLQ-TPHNTSLTNATHQSRDKAFAPS 1739
GP G + ATPS M P TP ++ + QS F+P
Sbjct: 1493 GLMFERGSGPVGSQTPAMTPWQGGATPSYMDAWTPGGMTPGMSAAFSPAAQSEVGGFSPG 1552
Query: 1740 -ELFLSPDSRYP 1750
SP P
Sbjct: 1553 YSPGWSPGPSSP 1564
Score = 114 bits (286), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 65/76 (85%), Gaps = 2/76 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE--EDAVDKMEDDMFL 58
ME I+EKI++ FGDDL C+FNDDNAEKLVLRIR+MNSDD K Q E E+ +DKMED+ FL
Sbjct: 1222 MEQIAEKISSTFGDDLRCLFNDDNAEKLVLRIRLMNSDDQKYQSEADEEQLDKMEDETFL 1281
Query: 59 RCIEANMLSDMTLQFI 74
RC+EAN+LSDMTLQ I
Sbjct: 1282 RCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 116 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 158 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 200 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 242 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 284 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 326 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 368 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 410 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 452 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 494 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 536 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 578 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 620 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 662 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 704 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 746 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 788 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 830 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 872 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 914 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 956 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 998 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1040 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1082 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1124 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1166 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1208 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1250 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1292 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1334 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
Score = 63.9 bits (154), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 1376 IRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IR+MNSDD K Q E E+ +DKMED+ FLRC+EAN+LSDMTLQ I
Sbjct: 1253 IRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGI 1297
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/293 (64%), Positives = 226/293 (77%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKK 1309
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L KVLSE++VDPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 1310 RVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPVRTTSNDICEIFEVLGIEAVRKAI 1369
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEET D+
Sbjct: 1370 EREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETADI 1429
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK +EI G++G G
Sbjct: 1430 LMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLAMEIQTGGGLLGT-GG 1488
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDSR 1748
M+FGS+ +P+S +P QTP N T A + A P SP
Sbjct: 1489 MYFGSSMSPASSAMSPAQTPWNAGTTPAYGAAWSPATGSGMTPGGAGFSPSGH 1541
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI++KI+ GFGDDLN I+ DDNAEKLV R+RI N + K +E++ V++MEDD+FLRC
Sbjct: 1220 MEAIADKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQESDK-GNEDEQVERMEDDVFLRC 1278
Query: 61 IEANMLSDMTLQFI 74
IE NMLSD+TLQ I
Sbjct: 1279 IETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1251 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1292
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/293 (64%), Positives = 226/293 (77%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKK 1314
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L KVLSE++VDPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 1315 RVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPVRTTSNDICEIFEVLGIEAVRKAI 1374
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEET D+
Sbjct: 1375 EREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETADI 1434
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LDA+KCK +EI G++G G
Sbjct: 1435 LMEAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLAMEIQTGGGLLGT-GG 1493
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFA----PSELFLSPDSR 1748
M+FGS+ +P+S +P QTP N T A + A P SP
Sbjct: 1494 MYFGSSMSPASSAMSPAQTPWNAGTTPAYGAAWSPATGSGMTPGGAGFSPSGH 1546
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI++KI+ GFGDDLN I+ DDNAEKLV R+RI N + K +E++ V++MEDD+FLRC
Sbjct: 1225 MEAIADKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQESDK-GNEDEQVERMEDDVFLRC 1283
Query: 61 IEANMLSDMTLQFI 74
IE NMLSD+TLQ I
Sbjct: 1284 IETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 1256 LRITNQESDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 1297
>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
Length = 1459
Score = 370 bits (950), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 167/227 (73%), Positives = 198/227 (87%), Gaps = 3/227 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQGIE+IGKVYMH PQTD KK
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGIESIGKVYMHWPQTDQKK 1290
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+GEFKAIA+WLLETDGT LM+VLSERDVDPVRT+SNDICEI VLGIEA RKS+
Sbjct: 1291 RIVVTETGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEIMDVLGIEAARKSI 1350
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
++E+N+VLQ+Y LY+NYRHLALLCDVMTA GH+ I + I+RQDTGALM+C+ +ETV V
Sbjct: 1351 KRELNSVLQYYDLYINYRHLALLCDVMTATGHMTPI--NSIDRQDTGALMKCTVKETVSV 1408
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE 1686
L +AA HAE DP+RGVSEN+I+GQLPRMGTGCFDL LDAEKCK+ IE
Sbjct: 1409 LSEAAGHAEVDPLRGVSENLILGQLPRMGTGCFDLFLDAEKCKNAIE 1455
Score = 91.7 bits (226), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EK+ FG+ + C+F+DDNAEKLVLRI+I++ DD ++EE V MEDD+FLRC
Sbjct: 1201 MEQIAEKVYTMFGNAVKCMFSDDNAEKLVLRIQILSVDDVN-EEEEQQVAHMEDDIFLRC 1259
Query: 61 IEANMLSDMTLQFI 74
IE NMLSDMTLQ I
Sbjct: 1260 IEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1232 IQILSVDDVN-EEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGI 1273
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 368 bits (944), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 166/226 (73%), Positives = 197/226 (87%), Gaps = 3/226 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQGIE+IGKVYMH PQTD KK
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGIESIGKVYMHWPQTDQKK 1272
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++TE+GEFKAIA+WLLETDGT LM+VLSERDVDPVRT+SNDICEI VLGIEA RKS+
Sbjct: 1273 RIVVTETGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEIMDVLGIEAARKSI 1332
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
++E+N+VLQ+Y LY+NYRHLALLCDVMTA GH+ I + I+RQDTGALM+C+ +ETV V
Sbjct: 1333 KRELNSVLQYYDLYINYRHLALLCDVMTATGHMTPI--NSIDRQDTGALMKCTVKETVSV 1390
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1685
L +AA HAE DP+RGVSEN+I+GQLPRMGTGCFDL LDAEKCK+ I
Sbjct: 1391 LSEAAGHAEVDPLRGVSENLILGQLPRMGTGCFDLFLDAEKCKNAI 1436
Score = 91.3 bits (225), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EK+ FG+ + C+F+DDNAEKLVLRI+I++ DD ++EE V MEDD+FLRC
Sbjct: 1183 MEQIAEKVYTMFGNAVKCMFSDDNAEKLVLRIQILSVDDVN-EEEEQQVAHMEDDVFLRC 1241
Query: 61 IEANMLSDMTLQFI 74
IE NMLSDMTLQ I
Sbjct: 1242 IEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
I+I++ DD ++EE V MEDD+FLRCIE NMLSDMTLQ I
Sbjct: 1214 IQILSVDDVN-EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGI 1255
>gi|256082852|ref|XP_002577666.1| DNA-directed RNA polymerase II largest subunit [Schistosoma mansoni]
Length = 1785
Score = 356 bits (914), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 177/297 (59%), Positives = 216/297 (72%), Gaps = 10/297 (3%)
Query: 1460 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQGI I KVYMHLP+T K
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1207
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR++I + G F +A+W+LETDGT LM+VL+ERDVDPVRT SNDI EIF+ LGIEAVRK+
Sbjct: 1208 KRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVDPVRTVSNDIVEIFEALGIEAVRKA 1267
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+E EM+ V+ F G YVNYRHLALLCD+MT KGHLMAITRHG+NR DTGAL RCSFEETVD
Sbjct: 1268 IECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVD 1327
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
+LM+AA H+E DPM GVSE I++GQL R+GTGCFDLLLD+ KC++ IPL G++G
Sbjct: 1328 ILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDLLLDSAKCQEAQPIPLG-GVLG--M 1384
Query: 1699 GMFFGSAATPS---SMIHNPLQTPHNT--SLTNATHQSR-DKAFAPSELFLSPDSRY 1749
G+F P S H P H+ S+ + +++ A AP SP RY
Sbjct: 1385 GLFNAPDGIPVLGDSGYHTPWDNAHSPVGSVDSPSYRGGLGGATAPHNAMFSPAMRY 1441
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK-MQDEEDAVDKMEDDMFLR 59
ME I++KI FG+DL C DDN KLV+RIRIMNSD K +D + DKMEDD FLR
Sbjct: 1118 MEQIADKITRAFGNDLICHIPDDNL-KLVMRIRIMNSDLEKDFKDADTTSDKMEDDTFLR 1176
Query: 60 CIEANMLSDMTLQFI 74
IEAN+L+D+TLQ I
Sbjct: 1177 FIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I
Sbjct: 1148 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGI 1191
>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit [Schistosoma
mansoni]
Length = 1900
Score = 355 bits (912), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 177/297 (59%), Positives = 216/297 (72%), Gaps = 10/297 (3%)
Query: 1460 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQGI I KVYMHLP+T K
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR++I + G F +A+W+LETDGT LM+VL+ERDVDPVRT SNDI EIF+ LGIEAVRK+
Sbjct: 1323 KRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVDPVRTVSNDIVEIFEALGIEAVRKA 1382
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+E EM+ V+ F G YVNYRHLALLCD+MT KGHLMAITRHG+NR DTGAL RCSFEETVD
Sbjct: 1383 IECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVD 1442
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
+LM+AA H+E DPM GVSE I++GQL R+GTGCFDLLLD+ KC++ IPL G++G
Sbjct: 1443 ILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDLLLDSAKCQEAQPIPLG-GVLG--M 1499
Query: 1699 GMFFGSAATPS---SMIHNPLQTPHNT--SLTNATHQSR-DKAFAPSELFLSPDSRY 1749
G+F P S H P H+ S+ + +++ A AP SP RY
Sbjct: 1500 GLFNAPDGIPVLGDSGYHTPWDNAHSPVGSVDSPSYRGGLGGATAPHNAMFSPAMRY 1556
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK-MQDEEDAVDKMEDDMFLR 59
ME I++KI FG+DL C DDN KLV+RIRIMNSD K +D + DKMEDD FLR
Sbjct: 1233 MEQIADKITRAFGNDLICHIPDDNL-KLVMRIRIMNSDLEKDFKDADTTSDKMEDDTFLR 1291
Query: 60 CIEANMLSDMTLQFIRIMNS---DDSKMQDEEDAVDK 93
IEAN+L+D+TLQ I + K QD++ V K
Sbjct: 1292 FIEANLLTDITLQGIPQITKVYMHLPKTQDKKRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 116 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 171
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 172 EDAVDK 177
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 158 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 213
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 214 EDAVDK 219
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 200 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 255
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 256 EDAVDK 261
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 242 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 297
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 298 EDAVDK 303
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 284 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 339
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 340 EDAVDK 345
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 326 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 381
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 382 EDAVDK 387
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 368 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 423
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 424 EDAVDK 429
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 410 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 465
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 466 EDAVDK 471
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 452 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 507
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 508 EDAVDK 513
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 494 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 549
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 550 EDAVDK 555
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 536 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 591
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 592 EDAVDK 597
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 578 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 633
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 634 EDAVDK 639
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 620 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 675
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 676 EDAVDK 681
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 662 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 717
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 718 EDAVDK 723
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 704 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 759
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 760 EDAVDK 765
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 746 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 801
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 802 EDAVDK 807
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 788 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 843
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 844 EDAVDK 849
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 830 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 885
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 886 EDAVDK 891
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 872 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 927
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 928 EDAVDK 933
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 914 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 969
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 970 EDAVDK 975
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 956 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1011
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1012 EDAVDK 1017
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 998 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1053
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1054 EDAVDK 1059
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1040 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1095
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1096 EDAVDK 1101
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1082 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1137
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1138 EDAVDK 1143
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1124 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1179
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1180 EDAVDK 1185
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1166 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1221
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1222 EDAVDK 1227
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1208 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1263
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1264 EDAVDK 1269
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1250 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1305
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1306 EDAVDK 1311
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1292 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1347
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1348 EDAVDK 1353
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1334 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1389
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1390 EDAVDK 1395
+ V K
Sbjct: 1323 KRVVIK 1328
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1376 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQDE 1431
IRIMNSD K +D + DKMEDD FLR IEAN+L+D+TLQ I + K QD+
Sbjct: 1263 IRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDK 1322
Query: 1432 EDAVDK 1437
+ V K
Sbjct: 1323 KRVVIK 1328
>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
Length = 1877
Score = 352 bits (902), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 181/315 (57%), Positives = 219/315 (69%), Gaps = 28/315 (8%)
Query: 1460 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQGI I KVYMH PQT K
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGIPQITKVYMHRPQTQDK 1277
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR++I + G F A+A+W+LETDGT LM+VL+ERDVDP RT SNDI EIF+ LGIEAVRK+
Sbjct: 1278 KRVVIKDDGSFDAVAEWMLETDGTCLMRVLAERDVDPTRTVSNDIVEIFEALGIEAVRKA 1337
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+E EM V+ F G YVNYRHLALLCD+MT KGHLMAITRHG+NR DTGAL RCSFEETVD
Sbjct: 1338 IECEMYHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVD 1397
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
+LMDAA HAE DPM GVSE I++GQL ++GTGCFDLLLD+ KC++ IPLA G++G
Sbjct: 1398 ILMDAATHAECDPMAGVSETIMLGQLAKIGTGCFDLLLDSAKCQEAQPIPLA-GVVG--M 1454
Query: 1699 GMF----FGSAATPS-SMIHNP-----------LQTPHNTSLTNAT--------HQSRDK 1734
G+F F A+P + P QTP +++ + A +
Sbjct: 1455 GLFNAPGFEGIASPGLGLSMGPDGLPVLVGDIGYQTPWDSAHSPAGSIDASPNYRGALGG 1514
Query: 1735 AFAPSELFLSPDSRY 1749
A AP SP RY
Sbjct: 1515 ATAPHSAMFSPAVRY 1529
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK-MQDEEDAVDKMEDDMFLR 59
ME IS+KI FG+DL C DDN KLV+RIRIMNSD K +++ + DKMEDD FLR
Sbjct: 1188 MEQISDKITRAFGNDLICHIPDDNL-KLVMRIRIMNSDLEKDLKEADTTSDKMEDDTFLR 1246
Query: 60 CIEANMLSDMTLQFI 74
IEAN+LSD+TLQ I
Sbjct: 1247 FIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSK-MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD K +++ + DKMEDD FLR IEAN+LSD+TLQ I
Sbjct: 1218 IRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEANLLSDITLQGI 1261
>gi|313225875|emb|CBY21018.1| unnamed protein product [Oikopleura dioica]
Length = 928
Score = 340 bits (872), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 174/299 (58%), Positives = 215/299 (71%), Gaps = 20/299 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQGIE+I +VYM+LP+ + KK
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGIESIARVYMNLPKEEEKK 369
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+I I + GEF + DW+LETDGT+LMKVLS+RD+D VRT SNDICE F++LG+EAVRK +
Sbjct: 370 KIFINKEGEFASQQDWILETDGTALMKVLSQRDIDTVRTSSNDICECFEILGVEAVRKCL 429
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+N V+ F G YVNYRH+++LCDVMT++GHLMAITRHG+NRQD GALMRCSFEETVD+
Sbjct: 430 EREINNVISFDGSYVNYRHMSMLCDVMTSRGHLMAITRHGVNRQDVGALMRCSFEETVDI 489
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG---- 1695
LM AAA AE DP+ GVSENI++GQ GTGCF L+LD EKCKD +E+P G
Sbjct: 490 LMTAAAAAEVDPLTGVSENIMLGQQIPGGTGCFQLVLDVEKCKDAMEVPGNGGGNFMGGM 549
Query: 1696 -----GPAGMFFGS------AATPSSMIHNPLQTPHNTSLTNA---THQSRD-KAFAPS 1739
P+G F S +ATPS + P TP + QS D F+P
Sbjct: 550 FGGAMSPSGSFTPSMPWADGSATPSGVGWTPY-TPRGGATPGGMFSPAQSEDNPGFSPG 607
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 64/74 (86%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKIN GFGDDLNCIFNDDNA+KLVLRIRIMN+D +DE+DA DKMEDD FLR
Sbjct: 279 MEQISEKINNGFGDDLNCIFNDDNADKLVLRIRIMNNDQKDAEDEDDAPDKMEDDTFLRY 338
Query: 61 IEANMLSDMTLQFI 74
IEAN+LSDMTLQ I
Sbjct: 339 IEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN+D +DE+DA DKMEDD FLR IEAN+LSDMTLQ I
Sbjct: 310 IRIMNNDQKDAEDEDDAPDKMEDDTFLRYIEANILSDMTLQGI 352
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
Length = 1341
Score = 334 bits (856), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 165/171 (96%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQGIEAI KVYMHLPQTD+KK
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDNKK 1230
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT++GEF+AIA+WLLETDGTSLMKVLSERDVDPVRT+SNDICEIF VLGIEAVRKS+
Sbjct: 1231 RIIITDTGEFRAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFTVLGIEAVRKSI 1290
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
EKEMN VLQFYGLYVNYRHLALLCDVMTAKG+LMAITRHGINRQDTGALMR
Sbjct: 1291 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGYLMAITRHGINRQDTGALMR 1341
Score = 131 bits (329), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 68/74 (91%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKI AGFG+DLNCIFNDDNAEKLVLRIRIMNSD+SK +E++ +DKMEDDMFLRC
Sbjct: 1140 MEQISEKITAGFGEDLNCIFNDDNAEKLVLRIRIMNSDESKFGEEDEQIDKMEDDMFLRC 1199
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1200 IEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD+SK +E++ +DKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1171 IRIMNSDESKFGEEDEQIDKMEDDMFLRCIEANMLSDMTLQGI 1213
>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
Length = 1457
Score = 331 bits (848), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 151/203 (74%), Positives = 180/203 (88%), Gaps = 2/203 (0%)
Query: 1477 VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWL 1536
V KMEDD+FLRC EANMLSDMTLQG+E+I KV M+LP+TD KKRI++TE+GEF+AIA+W+
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQGMESIEKVSMYLPKTDEKKRIVVTETGEFEAIAEWI 1310
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
LETDGT LM+VLSERDVDPVRT+SNDI EIF VLG+EA RK++EKEMN +LQFYGL VN+
Sbjct: 1311 LETDGTQLMRVLSERDVDPVRTYSNDIREIFSVLGVEAARKALEKEMNNLLQFYGLNVNH 1370
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RHLALLCDVMTA G LM I+ I+RQDT ALM+C+ +ETV VL++AA HAE DP+RGVS
Sbjct: 1371 RHLALLCDVMTATGQLMPIS--SIDRQDTSALMKCTVKETVSVLLEAAGHAEIDPLRGVS 1428
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAE 1679
N+I+GQLPRMGTGCFDL+LDAE
Sbjct: 1429 VNLILGQLPRMGTGCFDLILDAE 1451
Score = 83.6 bits (205), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M+ I+EK+NA FG+ L IF++D+AEKLVLRIRI+ D +EE V KMEDD+FLRC
Sbjct: 1204 MKQIAEKVNAEFGNSLKIIFSNDSAEKLVLRIRIIMDSDDSSDEEEQ-VAKMEDDIFLRC 1262
Query: 61 IEANMLSDMTLQ 72
EANMLSDMTLQ
Sbjct: 1263 FEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 133 VDKMEDDMFLRCIEANMLSDMTLQ 156
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 217 VDKMEDDMFLRCIEANMLSDMTLQ 240
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 301 VDKMEDDMFLRCIEANMLSDMTLQ 324
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 385 VDKMEDDMFLRCIEANMLSDMTLQ 408
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 469 VDKMEDDMFLRCIEANMLSDMTLQ 492
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 553 VDKMEDDMFLRCIEANMLSDMTLQ 576
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 637 VDKMEDDMFLRCIEANMLSDMTLQ 660
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 721 VDKMEDDMFLRCIEANMLSDMTLQ 744
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 805 VDKMEDDMFLRCIEANMLSDMTLQ 828
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 889 VDKMEDDMFLRCIEANMLSDMTLQ 912
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 973 VDKMEDDMFLRCIEANMLSDMTLQ 996
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 1057 VDKMEDDMFLRCIEANMLSDMTLQ 1080
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 1141 VDKMEDDMFLRCIEANMLSDMTLQ 1164
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 1225 VDKMEDDMFLRCIEANMLSDMTLQ 1248
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 1309 VDKMEDDMFLRCIEANMLSDMTLQ 1332
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 1393 VDKMEDDMFLRCIEANMLSDMTLQ 1416
V KMEDD+FLRC EANMLSDMTLQ
Sbjct: 1251 VAKMEDDIFLRCFEANMLSDMTLQ 1274
>gi|195566225|ref|XP_002106688.1| RNA polymerase II 215kD subunit [Drosophila simulans]
gi|194204073|gb|EDX17649.1| RNA polymerase II 215kD subunit [Drosophila simulans]
Length = 552
Score = 313 bits (802), Expect = 7e-82, Method: Composition-based stats.
Identities = 151/177 (85%), Positives = 156/177 (88%), Gaps = 6/177 (3%)
Query: 1545 MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSVEKEMN VLQFYGLYVNYRHLALLCD
Sbjct: 1 MKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCD 60
Query: 1605 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE DPMRGVSENIIMGQL
Sbjct: 61 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQL 120
Query: 1665 PRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGPAGMFFGSAATPSSMIHNPLQTP 1719
P+MGTGCFDLLLDAEKC+ GIEIP L M+GG A MF G +TPS P TP
Sbjct: 121 PKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGG-AAMFIGGGSTPSM---TPPMTP 173
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 306 bits (784), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 140/171 (81%), Positives = 156/171 (91%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQGIEAI KVYMHLP TD KK
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGIEAIAKVYMHLPTTDDKK 1232
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI ITE GEFKA+A+W+LETDG+SLMKVLSERDVDPVRT++NDI E+F LGIEAVRK++
Sbjct: 1233 RIHITEEGEFKAVAEWILETDGSSLMKVLSERDVDPVRTYTNDIVEVFATLGIEAVRKAI 1292
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
E+EM V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+TGAL R
Sbjct: 1293 EREMVHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALAR 1343
Score = 139 bits (349), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKI AGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEE+ VDKMEDD+FLRC
Sbjct: 1142 MEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEEVVDKMEDDVFLRC 1201
Query: 61 IEANMLSDMTLQFI 74
IE+N+LSDMTLQ I
Sbjct: 1202 IESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSKMQDEE+ VDKMEDD+FLRCIE+N+LSDMTLQ I
Sbjct: 1173 IRIMNSDDSKMQDEEEVVDKMEDDVFLRCIESNLLSDMTLQGI 1215
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 302 bits (773), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 137/171 (80%), Positives = 156/171 (91%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQGIEAI KVYMHLP T+ KK
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI ITE GEFKA+A+W+LETDGT+LMKVLS+RDVDP+RT +NDI E+F +LGIEAVRKS+
Sbjct: 1230 RISITEEGEFKAVAEWILETDGTALMKVLSQRDVDPIRTTTNDIVEVFSILGIEAVRKSI 1289
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
EKEMN V+ F G YVNYRHL+LLCD MTAKGHLMAITRHGINRQ+TGAL R
Sbjct: 1290 EKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGALAR 1340
Score = 138 bits (347), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 77/91 (84%), Gaps = 8/91 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKI AGFGDDLNCIFNDDNAEKLVLRIRIMNSD+SKMQ+EE+ VDKMEDD+FLRC
Sbjct: 1139 MEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDESKMQNEEEIVDKMEDDVFLRC 1198
Query: 61 IEANMLSDMTLQ--------FIRIMNSDDSK 83
IEAN+LSDMTLQ ++ + N++D K
Sbjct: 1199 IEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 167
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 209
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 251
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 293
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 335
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 377
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 419
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 461
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 503
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 545
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 587
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 629
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 671
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 713
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 755
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 797
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 839
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 881
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 923
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 965
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1007
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1049
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1091
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1133
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1175
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1217
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1259
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1301
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1343
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1385
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
Score = 77.8 bits (190), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 8/60 (13%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1427
IRIMNSD+SKMQ+EE+ VDKMEDD+FLRCIEAN+LSDMTLQ ++ + N++D K
Sbjct: 1170 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1229
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 294 bits (753), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/228 (60%), Positives = 174/228 (76%), Gaps = 1/228 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+R+ D K +D +A + D+ LRC+ MLS++TLQGIE+I KVY+H +K
Sbjct: 1272 LRLSEQHDKKSEDINEASVR-NDEAVLRCLGVTMLSNLTLQGIESITKVYVHNAVEPERK 1330
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R + T G A+W+LETDGT+L KVLSE D+D RT +NDICE+F+VLGIEA RK++
Sbjct: 1331 RAVETPDGGLMQPAEWILETDGTALAKVLSEPDIDATRTTTNDICEVFEVLGIEAARKAI 1390
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EMN V+ F G YVNYRHLALLCDVMTAKG+LMAI+RHGINRQ+ GALMRCSFEETVD+
Sbjct: 1391 EREMNHVISFDGSYVNYRHLALLCDVMTAKGYLMAISRHGINRQEMGALMRCSFEETVDI 1450
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 1687
L +AA H E D ++GVSENI++GQL R GTGCFDLL+D E CK G+++
Sbjct: 1451 LTEAAVHTEQDFIKGVSENIMLGQLARGGTGCFDLLIDVENCKQGMQL 1498
Score = 67.4 bits (163), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E I+EKI GFGDDL DDNAEKL+LR+R+ D K +D +A + D+ LRC
Sbjct: 1241 LEMIAEKIRDGFGDDLMVTHTDDNAEKLILRLRLSEQHDKKSEDINEASVR-NDEAVLRC 1299
Query: 61 IEANMLSDMTLQFI 74
+ MLS++TLQ I
Sbjct: 1300 LGVTMLSNLTLQGI 1313
>gi|356605956|gb|AET25009.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 7
KK-2011]
Length = 621
Score = 287 bits (735), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/168 (76%), Positives = 148/168 (88%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 513
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKA+ADW+LETDGT+L++VLSER +DPVRT+SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 514 PEGGFKAVADWILETDGTALLRVLSERQIDPVRTYSNDICEIFEVLGIEAVRKAIEREMD 573
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1632
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCS
Sbjct: 574 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCS 621
Score = 98.6 bits (244), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I++GFG D++ I+ DDNAEKLV R+RI DD + +E+ VDKMEDD+FLRC
Sbjct: 419 MELIADRIHSGFGSDVHTIYTDDNAEKLVFRLRIA-GDDKNAETQEEQVDKMEDDVFLRC 477
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 478 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 454 GDDKNAETQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 508
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 195/289 (67%), Gaps = 35/289 (12%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQGIE+I KVYM LP +D KK
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGIESISKVYMLLPSSDDKK 1273
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R +I GE++A+++W+LETDGTSL+KVLS+ VD RT+SN ICEIF+VLGIEAVRK+V
Sbjct: 1274 RFVINADGEYQAVSEWILETDGTSLLKVLSDPAVDATRTYSNHICEIFEVLGIEAVRKAV 1333
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKE+ V+ F G YVNYRHLALLCD+MTAKGH VD+
Sbjct: 1334 EKEIKHVISFDGSYVNYRHLALLCDIMTAKGH-------------------------VDI 1368
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AAAHAE D + GVSE+I++GQL R+GTG FDLLLD + CK +E+P++ G
Sbjct: 1369 LMEAAAHAEEDLLLGVSESIMLGQLARLGTGSFDLLLDVQACKQAMEVPMSLVQGAGAKN 1428
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNAT--HQSRDKAFA-PSELFLSP 1745
F A M H+ + +P + +T +++ D + A PS +F SP
Sbjct: 1429 SFLSMNA----MTHHSMLSPTTNWMAGSTPVYKAVDWSPALPSGVF-SP 1472
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M++++EKIN FGDDL I+ DDNAE+LV RIRI SK+ EE+AVD+MEDD+FLR
Sbjct: 1185 MQSVAEKINQNFGDDLRVIYTDDNAERLVFRIRIARGRGSKL--EEEAVDRMEDDVFLRI 1242
Query: 61 IEANMLSDMTLQFI 74
IE+N+L+DMTLQ I
Sbjct: 1243 IESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI SK+ EE+AVD+MEDD+FLR IE+N+L+DMTLQ I
Sbjct: 1216 IRIARGRGSKL--EEEAVDRMEDDVFLRIIESNLLTDMTLQGI 1256
>gi|157841468|gb|ABV83200.1| RNA polymerase 2 [Rhabditis brassicae]
Length = 628
Score = 280 bits (716), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 132/170 (77%), Positives = 148/170 (87%), Gaps = 2/170 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH PQTD KK
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGITSICKVYMHKPQTDDKK 518
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R IIT G FK+IADWLLETDGT+L+KVLSE+ +DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 519 RTIITPEGGFKSIADWLLETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKSI 578
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 579 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 628
Score = 98.6 bits (244), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++ I+ GFGDDLN I+ DDNA+KLV R+RI N DD K DEE +DKMEDD+FLRC
Sbjct: 430 MEQIADXIHQGFGDDLNVIYTDDNADKLVFRLRITNQDD-KGADEEQ-IDKMEDDVFLRC 487
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 488 IESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 461 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 501
>gi|157841496|gb|ABV83214.1| RNA polymerase 2 [Rhabditoides inermis]
Length = 630
Score = 280 bits (716), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 129/173 (74%), Positives = 149/173 (86%), Gaps = 2/173 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKK 517
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+I+IT G FKAI WLLETDGT+L+KVLSER+VD +RT SNDICEIF++LGIEAVRKS+
Sbjct: 518 KIVITPDGSFKAIEQWLLETDGTALLKVLSERNVDTIRTTSNDICEIFEILGIEAVRKSI 577
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1632
EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR + GALMRCS
Sbjct: 578 EKEMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRXEVGALMRCS 630
Score = 100 bits (249), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+E+I+ GFGDDLN I+ DDNA+KLV R+RI N D+ K +E+ +DKMEDD+FLRC
Sbjct: 429 MEQIAERIHQGFGDDLNVIYTDDNADKLVFRLRITNQDNDK--GDEEQIDKMEDDVFLRC 486
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 487 IESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D+ K +E+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDNDK--GDEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
>gi|157841466|gb|ABV83199.1| RNA polymerase 2 [Pellioditis typica]
Length = 633
Score = 279 bits (714), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 130/172 (75%), Positives = 148/172 (86%), Gaps = 2/172 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQGI +I KVYMH P TD KK
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGITSISKVYMHKPMTDDKK 521
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IIT G FKAIADWLLETDGT+L+KVLSE+ +DP+RT SNDICEIF+VLGIEAVRKS+
Sbjct: 522 RVIITPEGGFKAIADWLLETDGTALLKVLSEQHIDPIRTTSNDICEIFEVLGIEAVRKSI 581
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN Q+ GALM C
Sbjct: 582 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINXQEVGALMXC 633
Score = 101 bits (252), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+AGFGDDLN I+ DDNA+KLV R+RI N DD K DEE +DKMEDD+FLRC
Sbjct: 433 MEQIADKIHAGFGDDLNVIYTDDNADKLVFRLRITNQDD-KGTDEEQ-IDKMEDDVFLRC 490
Query: 61 IEANMLSDMTLQFI 74
IE+NMLS++TLQ I
Sbjct: 491 IESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N DD K DEE +DKMEDD+FLRCIE+NMLS++TLQ I
Sbjct: 464 LRITNQDD-KGTDEEQ-IDKMEDDVFLRCIESNMLSELTLQGI 504
>gi|157841392|gb|ABV83150.1| RNA polymerase 2 [Brevibucca saprophaga]
Length = 386
Score = 278 bits (712), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/176 (76%), Positives = 147/176 (83%), Gaps = 3/176 (1%)
Query: 1456 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1514
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQGIE I KVYMH P
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1515 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1574
TD KKR IT G FK++A+W+LETDGT+L+KVLSER VDPVRT SNDICEIF VLGIEA
Sbjct: 271 TDDKKRTFITTEGAFKSVAEWILETDGTALLKVLSERHVDPVRTTSNDICEIFDVLGIEA 330
Query: 1575 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
VRKS+E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ GALMR
Sbjct: 331 VRKSIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQXVGALMR 386
Score = 102 bits (255), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 65/91 (71%), Gaps = 10/91 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KIN GFGDDLN I+ DDNA+ LV RIRI SD K EE+ VDKMEDD+FLRC
Sbjct: 187 MEHIADKINKGFGDDLNVIYTDDNADTLVFRIRINASDGDK--GEEEQVDKMEDDVFLRC 244
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 245 IEANMLSDLTLQGIETIAKVYMHKPNTDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 112 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 162
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 163 SDDSK 167
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 154 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 204
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 205 SDDSK 209
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 196 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 246
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 247 SDDSK 251
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 238 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 288
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 289 SDDSK 293
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 280 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 330
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 331 SDDSK 335
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 322 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 372
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 373 SDDSK 377
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 364 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 414
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 415 SDDSK 419
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 406 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 456
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 457 SDDSK 461
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 448 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 498
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 499 SDDSK 503
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 490 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 540
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 541 SDDSK 545
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 532 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 582
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 583 SDDSK 587
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 574 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 624
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 625 SDDSK 629
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 616 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 666
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 667 SDDSK 671
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 658 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 708
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 709 SDDSK 713
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 700 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 750
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 751 SDDSK 755
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 742 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 792
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 793 SDDSK 797
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 784 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 834
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 835 SDDSK 839
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 826 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 876
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 877 SDDSK 881
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 868 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 918
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 919 SDDSK 923
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 910 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 960
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 961 SDDSK 965
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 952 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1002
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1003 SDDSK 1007
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 994 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1044
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1045 SDDSK 1049
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 1036 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1086
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1087 SDDSK 1091
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 1078 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1128
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1129 SDDSK 1133
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 1120 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1170
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1171 SDDSK 1175
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 1162 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1212
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1213 SDDSK 1217
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 1204 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1254
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1255 SDDSK 1259
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 1246 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1296
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1297 SDDSK 1301
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 1288 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1338
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1339 SDDSK 1343
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 1330 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1380
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1381 SDDSK 1385
+DD K
Sbjct: 271 TDDKK 275
Score = 60.1 bits (144), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 11/65 (16%)
Query: 1372 TLQF-IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------N 1422
TL F IRI SD K EE+ VDKMEDD+FLRCIEANMLSD+TLQ I + N
Sbjct: 213 TLVFRIRINASDGDK--GEEEQVDKMEDDVFLRCIEANMLSDLTLQGIETIAKVYMHKPN 270
Query: 1423 SDDSK 1427
+DD K
Sbjct: 271 TDDKK 275
>gi|157841494|gb|ABV83213.1| RNA polymerase 2 [Rhabditoides inermiformis]
Length = 597
Score = 276 bits (707), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 126/170 (74%), Positives = 146/170 (85%), Gaps = 1/170 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKK 484
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G +KAI +WLLETDGT+L+KVL+E+ VDPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 485 RMVITPEGGYKAIPEWLLETDGTALLKVLAEKHVDPVRTSSNDICEIFEVLGIEAVRKAI 544
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAITRHGINRQ+ GALM
Sbjct: 545 EREMNHVISFDGSYVNYRHLALLCDVMTCKGHLMAITRHGINRQEVGALM 594
Score = 96.7 bits (239), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFGDDLN I+ DD A+KLV R+RI N + K EE+ VDKMEDD+FLRC
Sbjct: 395 MEHIADRIHQGFGDDLNVIYTDDXADKLVFRLRITNQAEDK-GGEEEQVDKMEDDVFLRC 453
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 454 IESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N + K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 426 LRITNQAEDK-GGEEEQVDKMEDDVFLRCIESNMLSDLTLQGI 467
>gi|1916670|gb|AAB51213.1| large subunit RNA polymerase II, partial [unidentified nematode]
Length = 633
Score = 276 bits (705), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 124/166 (74%), Positives = 145/166 (87%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 527
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
E G FK+I +W+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 528 EEGGFKSITEWILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMH 587
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 588 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 633
Score = 97.4 bits (241), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I++GFG D++ I+ DDNAEKLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 433 MEMIADRIHSGFGQDVHTIYTDDNAEKLVFRLRIA-GEDKAAEGQEEQVDKMEDDVFLRC 491
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 492 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 468 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 522
>gi|1916659|gb|AAB51210.1| large subunit RNA polymerase II, partial [Cruznema tripartitum]
Length = 633
Score = 275 bits (704), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 128/171 (74%), Positives = 145/171 (84%), Gaps = 1/171 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQGI +I KVYMH P TD KK
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGITSISKVYMHKPTTDDKK 522
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IIT G FKAI +W+LETDGT+L+KVLSE+ VD VRT SNDICEIF++LGIEAVRKS+
Sbjct: 523 RVIITPEGGFKAIPEWILETDGTALLKVLSEQHVDSVRTTSNDICEIFEILGIEAVRKSI 582
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
E+EMN V+ F G YVNYRHLALLCDVMTAKGHL+AITRHGINRQ+ G LMR
Sbjct: 583 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLLAITRHGINRQEVGCLMR 633
Score = 103 bits (257), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFGDDLN I+ DDNA+KLV R+RI N D K DEE VDKMEDDMFLRC
Sbjct: 433 MEQIADRIHQGFGDDLNVIYTDDNADKLVFRLRITNQDGDKGGDEEQ-VDKMEDDMFLRC 491
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 492 IESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 505
>gi|356605932|gb|AET24997.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 14
KK-2011]
Length = 624
Score = 275 bits (704), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 124/166 (74%), Positives = 144/166 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRI+IT
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIVIT 516
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 517 PEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMD 576
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 577 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 622
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI +D +E+ VDKMEDD+FLRC
Sbjct: 422 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRC 480
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 481 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 457 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 511
>gi|1778036|gb|AAB40621.1| RNA polymerase II large subunit, partial [Aduncospiculum halicti]
Length = 631
Score = 275 bits (703), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/171 (73%), Positives = 146/171 (85%), Gaps = 3/171 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGIEAISKVYMHKPTTDDKK 520
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ I+T G FKAI +W+LETDGT+L+KVLSE++VD RT+SNDICEIF++LGIEAVRK++
Sbjct: 521 KTIVTPDGSFKAIPEWILETDGTALLKVLSEQNVDQHRTYSNDICEIFEILGIEAVRKAI 580
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 581 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 631
Score = 107 bits (266), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI++KI+ GFGDDLN I+ DDNA+KLV R+RI N D EE+ VDKMEDDMFLRC
Sbjct: 433 MEAIADKIHHGFGDDLNVIYTDDNADKLVFRLRITNQDKG---GEEEQVDKMEDDMFLRC 489
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD+TLQ I
Sbjct: 490 IEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 464 LRITNQDKG---GEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 503
>gi|356605942|gb|AET25002.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 20
KK-2011]
Length = 505
Score = 275 bits (703), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/166 (74%), Positives = 145/166 (87%)
Query: 1463 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII 1522
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRII
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRII 399
Query: 1523 ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKE 1582
IT G FKA++DW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+E
Sbjct: 400 ITPEGGFKAVSDWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIERE 459
Query: 1583 MNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 1628
M+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GAL
Sbjct: 460 MDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGAL 505
Score = 103 bits (257), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 66/91 (72%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKI GFG+D++ I+ DDNAEKLV R+RI + DD + +E+ VDKMEDD+FLRC
Sbjct: 307 METIAEKIQGGFGNDVHTIYTDDNAEKLVFRLRI-SGDDKSAEGQEEQVDKMEDDVFLRC 365
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 366 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 119 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 161 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 203 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 245 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 287 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 329 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 371 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 413 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 455 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 497 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 539 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 581 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 623 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 665 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 707 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 749 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 791 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 833 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 875 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 917 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 959 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1001 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1043 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1085 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1127 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1169 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1211 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1253 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1295 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1337 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 8/57 (14%)
Query: 1379 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 340 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 396
>gi|1778038|gb|AAB40622.1| RNA polymerase II large subunit, partial [Zeldia punctata]
Length = 629
Score = 274 bits (700), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 122/171 (71%), Positives = 149/171 (87%), Gaps = 2/171 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQGIEAI KVYMH PQTD KK
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+ +T+ G F+ +++W+LETDGT+L++VLSE +VDP+RT+SNDICEIF+VLGIEAVRK++
Sbjct: 519 RVEVTQDGSFRMVSEWMLETDGTALLRVLSEPNVDPIRTYSNDICEIFEVLGIEAVRKAI 578
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 579 EREMNQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 629
Score = 97.4 bits (241), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 79/125 (63%), Gaps = 5/125 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+EKI+ GFG+DL+ I+ DDNA+KLV IR+ NS K + E+ +DKMEDD FL+C
Sbjct: 430 MEAIAEKIHKGFGEDLHVIYTDDNADKLVFHIRLTNSTTDK--ESEEQIDKMEDDTFLKC 487
Query: 61 IEANMLSDMTLQFIRIMNSD--DSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRI 118
IE+NMLSD+TLQ I ++ D++ V+ +D F R + ML +R+
Sbjct: 488 IESNMLSDLTLQGIEAISKVYMHKPQTDDKKRVEVTQDGSF-RMVSEWMLETDGTALLRV 546
Query: 119 MNSDD 123
++ +
Sbjct: 547 LSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 173
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 174 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 207
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 257
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 258 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 291
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 341
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 342 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 375
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 425
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 426 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 459
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 509
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 510 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 543
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 593
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 594 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 627
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 677
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 678 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 711
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 761
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 762 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 795
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 845
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 846 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 879
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 929
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 930 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 963
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 1013
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 1014 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 1047
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 1097
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 1098 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 1131
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 1181
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 1182 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 1215
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 1265
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 1266 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 1299
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 1349
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 1350 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 1383
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSD--DSKMQDEED 1433
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I ++ D++
Sbjct: 461 IRLTNSTTDK--ESEEQIDKMEDDTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKK 518
Query: 1434 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 1467
V+ +D F R + ML +R+++ +
Sbjct: 519 RVEVTQDGSF-RMVSEWMLETDGTALLRVLSEPN 551
>gi|157841440|gb|ABV83182.1| RNA polymerase 2 [Rhabditoides regina]
Length = 426
Score = 270 bits (691), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 123/168 (73%), Positives = 143/168 (85%), Gaps = 1/168 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKK 318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L++VL+E VDP+RT SNDICEIF+VLGIEAVRK +
Sbjct: 319 RMVITPEGGFKAIPEWLLETDGTALLRVLAESAVDPIRTSSNDICEIFEVLGIEAVRKGI 378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1627
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GA
Sbjct: 379 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGA 426
Score = 93.2 bits (230), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME+I+++I+ GFGDDLN I+ A+KLV R+RI N + K + EE VDKMEDD+FLRC
Sbjct: 229 MESIADRIHQGFGDDLNVIYTXXXADKLVFRLRITNQSEDKGETEEQ-VDKMEDDVFLRC 287
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 288 IESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 260 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 301
>gi|157841490|gb|ABV83211.1| RNA polymerase 2 [Pelodera teres]
Length = 629
Score = 270 bits (690), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 125/166 (75%), Positives = 143/166 (86%), Gaps = 1/166 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKK 522
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IITE G FKAI +WLLETDGT+L++VLSE+ VDP+RT SNDICEIF+VLGIEAVRK +
Sbjct: 523 RMIITEEGGFKAIPEWLLETDGTALLRVLSEQSVDPIRTSSNDICEIFEVLGIEAVRKGI 582
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1625
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+
Sbjct: 583 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 628
Score = 101 bits (251), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME+I+++I+ GFGDDLN I+ DDNA+KLV R+RI N D K + EE VDKMEDD+FLRC
Sbjct: 433 MESIADRIHQGFGDDLNVIYTDDNADKLVFRLRITNQDADKGESEEQ-VDKMEDDVFLRC 491
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 492 IESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
>gi|157841472|gb|ABV83202.1| RNA polymerase 2 [Oscheius insectivora]
Length = 246
Score = 269 bits (688), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 125/164 (76%), Positives = 144/164 (87%), Gaps = 2/164 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQGI +I KVYMH PQTD KK
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGISSISKVYMHKPQTDDKK 142
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IIT G+FKAIADW+LETDGT+L++VLSE +DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 143 RVIITPDGDFKAIADWILETDGTALLRVLSEPMIDPVRTTSNDICEIFEVLGIEAVRKSI 202
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1623
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ
Sbjct: 203 EREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 246
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI++GFGDDLN I+ DDNA+KLV RIRI N+D K +E+ +DKMEDDMFLRC
Sbjct: 54 MEQIADKIHSGFGDDLNVIYTDDNADKLVFRIRITNNDGDKADEEQ--IDKMEDDMFLRC 111
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 112 IESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRI N+D K +E+ +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 85 IRITNNDGDKADEEQ--IDKMEDDMFLRCIESNMLSDLTLQGI 125
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
Length = 1569
Score = 268 bits (685), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/355 (44%), Positives = 224/355 (63%), Gaps = 34/355 (9%)
Query: 1411 SDMTLQFIRI-MNSD---DSKMQDEEDAVDKMEDDMF--LRCIEANMLSDMTLQFIRIMN 1464
S+++ +RI +N + D+K+ +E A +++ D L CI + +D + IRI N
Sbjct: 1114 SNLSPWLLRIELNREKMTDTKLSMQEIA-ERIHADFGGDLNCIYNDDNADKLILRIRINN 1172
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+++K D+E +V +DD+FL+ IE+NML++M L+GIE I KV++ + K ++ I
Sbjct: 1173 DEENKAPDQEGSVG--DDDVFLKQIESNMLTEMDLKGIEGIKKVFIR----EDKNKVAID 1226
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
GE+ + +L+T+GT+L+ V+S DVD RT SN+I E +VLGIEAVR ++ +E+
Sbjct: 1227 ARGEYTKANELVLDTEGTNLLAVMSHPDVDHTRTTSNNIIETIEVLGIEAVRNALLRELR 1286
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEET D+L++AA
Sbjct: 1287 NVISFDGAYVNYRHLAILADVMTYRGHLMAITRHGINRVETGCLMRCSFEETADILLEAA 1346
Query: 1645 AHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA-GMFFG 1703
+E DP+ GVSENI++GQLP +GTGCFDL L+ K KD IE P GG A MF+
Sbjct: 1347 TFSELDPLSGVSENILLGQLPPLGTGCFDLFLNESKLKDAIEPP-----AGGEATAMFYE 1401
Query: 1704 SAAT-PSSMIHNPLQTPHNTS----LTNATHQSRDKAFAPSELFLSPDSRY-PYI 1752
AT P S TP+ S L N H + +P +P + Y PY+
Sbjct: 1402 PGATSPGSA------TPYMGSDERYLPNFFHTTPMYRMSPGA---TPAASYSPYV 1447
Score = 84.7 bits (208), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 60/74 (81%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M+ I+E+I+A FG DLNCI+NDDNA+KL+LRIRI N +++K D+E +V +DD+FL+
Sbjct: 1137 MQEIAERIHADFGGDLNCIYNDDNADKLILRIRINNDEENKAPDQEGSVG--DDDVFLKQ 1194
Query: 61 IEANMLSDMTLQFI 74
IE+NML++M L+ I
Sbjct: 1195 IESNMLTEMDLKGI 1208
>gi|356605946|gb|AET25004.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 17
KK-2011]
Length = 623
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 120/162 (74%), Positives = 140/162 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 521
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 522 PEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMH 581
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTG 1626
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ G
Sbjct: 582 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVG 623
Score = 95.1 bits (235), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI +D +E+ VDKMEDD+FLRC
Sbjct: 427 MEMIADRIHNGFGNDVHTIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRC 485
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 486 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 462 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 516
>gi|157841464|gb|ABV83198.1| RNA polymerase 2 [Protorhabditis sp. JB122]
Length = 595
Score = 268 bits (684), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 144/170 (84%), Gaps = 2/170 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQGI +I KVYMH P TD KK
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGITSIAKVYMHKPTTDDKK 485
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+I+ G FKAI +WLLETDGT+L++VLSER +DP RT SNDICEIF+VLGIEAVRK++
Sbjct: 486 RIVISPEGGFKAIPEWLLETDGTALLRVLSERHIDPRRTSSNDICEIFEVLGIEAVRKAI 545
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
++EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 546 QREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 595
Score = 98.2 bits (243), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GFGDD+N I+ DDNAEKLV R+RI + D+ EE+ +DKMEDD+FLRC
Sbjct: 397 MEQIADKIHQGFGDDINVIYTDDNAEKLVFRLRITSHDEKSA--EEEQIDKMEDDVFLRC 454
Query: 61 IEANMLSDMTLQFI 74
+E NMLSD+TLQ I
Sbjct: 455 LEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI + D+ EE+ +DKMEDD+FLRC+E NMLSD+TLQ I
Sbjct: 428 LRITSHDEKSA--EEEQIDKMEDDVFLRCLEGNMLSDLTLQGI 468
>gi|157841417|gb|ABV83167.1| RNA polymerase 2 [Cruznema tripartitum]
Length = 335
Score = 268 bits (684), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 124/163 (76%), Positives = 139/163 (85%), Gaps = 1/163 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQGI +I KVYMH P TD KK
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGITSISKVYMHKPTTDDKK 232
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IIT G FKAI +W+LETDGT+L+KVLSE+ VDPVRT SNDICEIF++LGIEAVRKS+
Sbjct: 233 RVIITPEGGFKAIPEWILETDGTALLKVLSEQHVDPVRTTSNDICEIFEILGIEAVRKSI 292
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 293 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 335
Score = 100 bits (250), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFGDDLN I+ DDNA+KLV R+RI D K DEE VDKMEDDMFLRC
Sbjct: 143 MEQIADRIHQGFGDDLNVIYTDDNADKLVFRLRITXQDGDKGGDEEQ-VDKMEDDMFLRC 201
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 202 IESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI D K DEE VDKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 174 LRITXQDGDKGGDEEQ-VDKMEDDMFLRCIESNMLSDLTLQGI 215
>gi|157841400|gb|ABV83155.1| RNA polymerase 2 [Rhabditis brassicae]
Length = 205
Score = 267 bits (683), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 127/163 (77%), Positives = 142/163 (87%), Gaps = 2/163 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH PQTD KK
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGITSICKVYMHKPQTDDKK 102
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R IIT G FK+IADWLLETDGT+L+KVLSE+ +DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 103 RTIITPEGGFKSIADWLLETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKSI 162
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 163 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 205
Score = 99.4 bits (246), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 61/74 (82%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GFGDDLN I+ DDNA+KLV R+RI N DD K DEE +DKMEDD+FLRC
Sbjct: 14 MEQIADKIHQGFGDDLNVIYTDDNADKLVFRLRITNQDD-KGADEEQ-IDKMEDDVFLRC 71
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 72 IESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N DD K DEE +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 45 LRITNQDD-KGADEEQ-IDKMEDDVFLRCIESNMLSDLTLQGI 85
>gi|356605948|gb|AET25005.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 16
KK-2011]
Length = 613
Score = 267 bits (682), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 120/159 (75%), Positives = 139/159 (87%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 514
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 515 PEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMD 574
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1623
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ
Sbjct: 575 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 613
Score = 98.2 bits (243), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 420 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIA-GEDKGAEGQEEQVDKMEDDVFLRC 478
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 479 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
>gi|50346881|gb|AAT75147.1| RNA polymerase 2 [Caenorhabditis plicata]
Length = 636
Score = 266 bits (681), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 119/165 (72%), Positives = 142/165 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQGI AI KVY++ PQ+D KKR IIT
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGIPAIAKVYLNKPQSDDKKRTIIT 531
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FK+IA+W+LETDGT+L +VLSE +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 532 PEGGFKSIAEWILETDGTALQRVLSEPQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMH 591
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 592 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 636
Score = 94.4 bits (233), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I E+I+AGFG+D+ I+ DDNA+KLV R+RI DD + +E+ VDKMEDD+FLRC
Sbjct: 437 MEMIDERIHAGFGNDVKTIYTDDNADKLVFRLRIA-GDDKMAEGQEEQVDKMEDDVFLRC 495
Query: 61 IEANMLSDMTLQFI 74
IE+NML+D+TLQ I
Sbjct: 496 IESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
Score = 53.9 bits (128), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
DD + +E+ VDKMEDD+FLRCIE+NML+D+TLQ I
Sbjct: 472 GDDKMAEGQEEQVDKMEDDVFLRCIESNMLADLTLQGI 509
>gi|1916663|gb|AAB51211.1| large subunit RNA polymerase II, partial [Mesorhabditis sp.]
Length = 633
Score = 266 bits (679), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 123/171 (71%), Positives = 144/171 (84%), Gaps = 1/171 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQGIE I KVYMH P TD KK
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPTTDDKK 522
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT FKAI +WLLETDGT+L++VLS+ +VDP+RT SNDICEIF+VLGIEAVRK++
Sbjct: 523 RIVITPEAGFKAIPEWLLETDGTALLQVLSQPNVDPIRTTSNDICEIFEVLGIEAVRKAI 582
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 583 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 633
Score = 88.2 bits (217), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAISE+I FG+ LN I+ DDNA+ LV RIRI+ +DD D E+ VD+MEDD FLR
Sbjct: 433 MEAISERIQQSFGETLNVIYTDDNADNLVFRIRIV-ADDQDKGDTEEQVDRMEDDAFLRA 491
Query: 61 IEANMLSDMTLQFI 74
+E NMLSD+TLQ I
Sbjct: 492 LEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 464 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 505
>gi|157841388|gb|ABV83148.1| RNA polymerase 2 [Panagrellus redivivus]
Length = 636
Score = 265 bits (676), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 145/170 (85%), Gaps = 2/170 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQGIE+I KVYMH P TD KK
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGIESISKVYMHKPSTDDKK 526
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+++T G+F+ IA+W+LETDGT+L+KVLSE VD +RT+SNDICE+F+VLGIEAVRK++
Sbjct: 527 RVVMTPEGDFQMIAEWILETDGTALLKVLSEPMVDGIRTYSNDICEVFEVLGIEAVRKAI 586
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALM
Sbjct: 587 EREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALM 636
Score = 94.4 bits (233), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI GFGDDL+ I+ DDNAEKLV +R+ NS K D E+ +DKMEDD FLRC
Sbjct: 438 MEMIADKITKGFGDDLHVIYTDDNAEKLVFHLRLQNSPGDK--DSEEQIDKMEDDAFLRC 495
Query: 61 IEANMLSDMTLQFI 74
+E N+LSD+TLQ I
Sbjct: 496 VEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+R+ NS K D E+ +DKMEDD FLRC+E N+LSD+TLQ I
Sbjct: 469 LRLQNSPGDK--DSEEQIDKMEDDAFLRCVEQNLLSDLTLQGI 509
>gi|157841492|gb|ABV83212.1| RNA polymerase 2 [Rhabditoides regina]
Length = 626
Score = 264 bits (675), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 121/164 (73%), Positives = 140/164 (85%), Gaps = 1/164 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKK 522
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L++VL+E VDP+RT SNDICEIF+VLGIEAVRK +
Sbjct: 523 RMVITPEGGFKAIPEWLLETDGTALLRVLAESAVDPIRTSSNDICEIFEVLGIEAVRKGI 582
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1623
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ
Sbjct: 583 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 626
Score = 100 bits (248), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME+I+++I+ GFGDDLN I+ DDNA+KLV R+RI N + K + EE VDKMEDD+FLRC
Sbjct: 433 MESIADRIHQGFGDDLNVIYTDDNADKLVFRLRITNQSEDKGETEEQ-VDKMEDDVFLRC 491
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 492 IESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N + K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 464 LRITNQSEDKGETEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 505
>gi|157841488|gb|ABV83210.1| RNA polymerase 2 [Pelodera punctata]
Length = 605
Score = 263 bits (673), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 121/162 (74%), Positives = 141/162 (87%), Gaps = 1/162 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKK 503
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L++VL+E+ VDPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 504 RMVITPEGGFKAIPEWLLETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKAI 563
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1621
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 564 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGIN 605
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+E+I+ GFGDDLN I+ DDNA+KLV R+RI N D K + EE +VDKMEDD+FLRC
Sbjct: 414 MEAIAERIHQGFGDDLNVIYTDDNADKLVFRLRITNQDADKGETEE-SVDKMEDDVFLRC 472
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 473 IESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
Score = 57.4 bits (137), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 445 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 486
>gi|50346885|gb|AAT75149.1| RNA polymerase 2 [Caenorhabditis drosophilae]
Length = 633
Score = 263 bits (673), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 117/168 (69%), Positives = 145/168 (86%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQGI +I KVYM+ P TD KKR
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKKR 525
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
+IT+ G FK+I +W+LETDGT+L++VL+E+ +DPVRT SNDICEIF+VLGIEAVRK++E
Sbjct: 526 TVITDEGGFKSITEWILETDGTALLRVLAEQQIDPVRTTSNDICEIFEVLGIEAVRKAIE 585
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 1628
+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GAL
Sbjct: 586 REMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGAL 633
Score = 97.4 bits (241), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 68/91 (74%), Gaps = 10/91 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I++GFG+D++ I+ DDNAEKLV R+RI + D K + +E+ VDKMEDD+FLRC
Sbjct: 436 MEMIADRIHSGFGNDVHTIYTDDNAEKLVFRLRI--AGDDKGEGQEEQVDKMEDDVFLRC 493
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANML+D+TLQ I + N+DD K
Sbjct: 494 IEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 117 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 159 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 201 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 243 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 285 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 327 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 369 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 411 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 453 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 495 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 537 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 579 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 621 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 663 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 705 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 747 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 789 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 831 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 873 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 915 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 957 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 999 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1041 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1083 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1125 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1167 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1209 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1251 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1293 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1335 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1377 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 466 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 524
>gi|157841368|gb|ABV83138.1| RNA polymerase 2 [Oscheius tipulae]
Length = 629
Score = 263 bits (672), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 140/163 (85%), Gaps = 1/163 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQGI +I KVYM+ P TD KK
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMYKPNTDDKK 526
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
++IIT G+FK I+DW+LETDGT+L++VLSE +DP +T SNDICEIF+VLGIEAVRKS+
Sbjct: 527 KVIITPEGDFKHISDWILETDGTALLRVLSEPSIDPAKTTSNDICEIFEVLGIEAVRKSI 586
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 587 EKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 629
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+AGFGDDLN I+ DDNAEKLV RIRI N D K+ +EE +DKMEDDMFLRC
Sbjct: 437 MEQIADKIHAGFGDDLNVIYTDDNAEKLVFRIRITNQGDDKLAEEEQ-IDKMEDDMFLRC 495
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 496 IESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 468 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 509
>gi|356605958|gb|AET25010.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 9
KK-2011]
Length = 607
Score = 262 bits (670), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 136/156 (87%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 511
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRKS+EKEM+
Sbjct: 512 PEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSIEKEMD 571
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1620
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 572 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 607
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG D++ I+ DDNAEKLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 417 MEMIADRIHGGFGQDVHTIYTDDNAEKLVFRLRIA-GEDKGAEGQEEQVDKMEDDVFLRC 475
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 476 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
>gi|157841394|gb|ABV83151.1| RNA polymerase 2 [Rhabditis sp. PS1130]
Length = 619
Score = 262 bits (670), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/162 (74%), Positives = 138/162 (85%), Gaps = 2/162 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH PQTD KK
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGITSIQKVYMHKPQTDDKK 517
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IIT G FK+IADWLLETDGT+L+KVLSE+ +DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 518 RVIITPEGGFKSIADWLLETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKSI 577
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1621
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMA T HGI
Sbjct: 578 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAXTXHGIT 619
Score = 102 bits (253), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 60/74 (81%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GFGDDLN I+ DDNA+KLV R+RI N DD EE+ +DKMEDD+FLRC
Sbjct: 429 MEQIADKIHQGFGDDLNVIYTDDNADKLVFRLRITNQDDKGA--EEEQIDKMEDDVFLRC 486
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 487 IESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 460 LRITNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 500
>gi|157841370|gb|ABV83139.1| RNA polymerase 2 [Oscheius dolichuroides]
Length = 629
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/161 (74%), Positives = 139/161 (86%), Gaps = 2/161 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQGI +I KVYMH P TD KK
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+++T G+FK IADW+LETDGT+L+KVLSE ++DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 529 RVVVTPEGDFKHIADWILETDGTALLKVLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSI 588
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1620
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 589 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 629
Score = 104 bits (260), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 10/91 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI++GFGDDLN I+ DDNA+KLV RIRI N D K EE+ +DKMEDDMFLRC
Sbjct: 440 MEQIADKIHSGFGDDLNVIYTDDNADKLVFRIRITNQGDDKA--EEEQIDKMEDDMFLRC 497
Query: 61 IEANMLSDMTLQ--------FIRIMNSDDSK 83
IE+NMLSD+TLQ ++ N+DD K
Sbjct: 498 IESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 167
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 209
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 251
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 293
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 335
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 377
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 419
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 461
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 503
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 545
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 587
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 629
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 671
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 713
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 755
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 797
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 839
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 881
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 923
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 965
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1007
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1049
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1091
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1133
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1175
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1217
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1259
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1301
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1343
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1385
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1427
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 471 IRITNQGDDKA--EEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 528
>gi|356605944|gb|AET25003.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 19
KK-2011]
Length = 610
Score = 262 bits (669), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 117/158 (74%), Positives = 137/158 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 512
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FK++ADW+LETDGT+L++VLSER +DP+RT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 513 PEGGFKSVADWILETDGTALLRVLSERQIDPIRTTSNDICEIFEVLGIEAVRKAIEREMH 572
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 573 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 610
Score = 94.7 bits (234), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI +D +E+ VDKMEDD+FLRC
Sbjct: 418 MEMIADRIHNGFGNDVHTIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRC 476
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 477 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
>gi|356605934|gb|AET24998.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 15
KK-2011]
Length = 614
Score = 261 bits (668), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 119/158 (75%), Positives = 138/158 (87%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM PQ+D KKRI+IT
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMSQPQSDDKKRIVIT 516
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
+ G F AIADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRKS+E+EM+
Sbjct: 517 KEGGFDAIADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSIEREMD 576
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 577 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 614
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI D ++E+ VDKMEDD+FLRC
Sbjct: 422 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGP-DNQEEQVDKMEDDVFLRC 480
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD+TLQ I
Sbjct: 481 IEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+D ++E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 457 GEDKGPDNQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 494
>gi|157841486|gb|ABV83209.1| RNA polymerase 2 [Pelodera strongyloides dermatitica]
Length = 633
Score = 261 bits (666), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/165 (73%), Positives = 142/165 (86%), Gaps = 1/165 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGIEAITKVYMHKPTTDDKK 527
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L++VL+E+ VDPVRT SNDICEIF+VLGIEAVRK +
Sbjct: 528 RMVITPEGGFKAIPEWLLETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKGI 587
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 1624
E+EM+ V+ F G YVNYRHLALLCDVMT+KGHLMAITR GINRQ+
Sbjct: 588 EREMHQVISFDGSYVNYRHLALLCDVMTSKGHLMAITRPGINRQE 632
Score = 103 bits (258), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+E+I+ GFGDDLN I+ DDNA+KLV R+RI N D K + EE +VDKMEDD+FLRC
Sbjct: 438 MEAIAERIHQGFGDDLNVIYTDDNADKLVFRLRITNQDMDKGESEE-SVDKMEDDVFLRC 496
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 497 IESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 469 LRITNQDMDKGESEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 510
>gi|50346858|gb|AAT75140.1| RNA polymerase 2 [Caenorhabditis remanei]
Length = 611
Score = 260 bits (665), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 118/157 (75%), Positives = 136/157 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 514
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 515 PEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMD 574
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1621
V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGIN
Sbjct: 575 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGIN 611
Score = 96.7 bits (239), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI +D +E+ VDKMEDD+FLRC
Sbjct: 420 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRC 478
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 479 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit, partial [Helobdella stagnalis]
Length = 1337
Score = 260 bits (665), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 121/172 (70%), Positives = 143/172 (83%), Gaps = 1/172 (0%)
Query: 1460 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQGI +I KVYM P TD K
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGITSIAKVYMQQPTTDDK 1225
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KRIII E GEFKA+ DW+LETDGT+L +VLS +VDPV+T SNDI E+F+VLGIEAVRKS
Sbjct: 1226 KRIIIDEKGEFKALQDWILETDGTALRRVLSVENVDPVKTVSNDIVEVFEVLGIEAVRKS 1285
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
+E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+TG L R
Sbjct: 1286 IEREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGVLAR 1337
Score = 112 bits (279), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 63/75 (84%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM-QDEEDAVDKMEDDMFLR 59
ME ISEKI AGFGDDLNCIFNDDNAEKLVLR+R+M++ D K QD E+ +DKM DD FL+
Sbjct: 1135 MEQISEKITAGFGDDLNCIFNDDNAEKLVLRVRLMSNQDGKQDQDTEEQIDKMPDDTFLK 1194
Query: 60 CIEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1195 HIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKM-QDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+R+M++ D K QD E+ +DKM DD FL+ IE+NML+DMTLQ I
Sbjct: 1166 VRLMSNQDGKQDQDTEEQIDKMPDDTFLKHIESNMLTDMTLQGI 1209
>gi|1916666|gb|AAB51212.1| large subunit RNA polymerase II, partial [Teratorhabditis palmarum]
Length = 631
Score = 258 bits (658), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/171 (69%), Positives = 142/171 (83%), Gaps = 3/171 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI + + D E+ ++KMEDDMFLR +E L ++TLQGIE I KVYMH P TD KK
Sbjct: 464 IRIRSENKG---DTEETIEKMEDDMFLRAVEQICLLELTLQGIEQISKVYMHKPTTDDKK 520
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R +IT G+F++IA+WLLETDGTSL+ VLS+ +VDPVRT+SNDICEIF+VLGIEAVRK++
Sbjct: 521 RTVITPEGDFRSIAEWLLETDGTSLLDVLSQPNVDPVRTYSNDICEIFEVLGIEAVRKAI 580
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMR
Sbjct: 581 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 631
Score = 77.0 bits (188), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+ +I GFG DL+ I+ DDNA+ LV RIRI + + D E+ ++KMEDDMFLR
Sbjct: 433 MEAIASRITQGFGYDLHTIYTDDNADSLVFRIRIRSENKG---DTEETIEKMEDDMFLRA 489
Query: 61 IEANMLSDMTLQFI 74
+E L ++TLQ I
Sbjct: 490 VEQICLLELTLQGI 503
>gi|157841484|gb|ABV83208.1| RNA polymerase 2 [Choriorhabditis cristata]
Length = 378
Score = 258 bits (658), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/163 (72%), Positives = 139/163 (85%), Gaps = 2/163 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH P +D KK
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGISSIAKVYMHKPTSDDKK 275
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
++IIT G F+AI +WLLETDGT+L+KVLSE+ +DPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 276 KVIITGDGGFRAIPEWLLETDGTALLKVLSEQYIDPVRTSSNDICEIFEVLGIEAVRKAI 335
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAITRHGINR
Sbjct: 336 EREMNNVISFDGSYVNYRHLALLCDVMTCKGHLMAITRHGINR 378
Score = 99.4 bits (246), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 60/74 (81%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GFGDDLN I+ DDNA+KLV R+RI N D K EE+ +DKMEDD+FLRC
Sbjct: 187 MEHIADKIHQGFGDDLNVIYADDNADKLVFRLRISNQSDDKA--EEEQIDKMEDDVFLRC 244
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 245 IESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 218 LRISNQSDDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 258
>gi|263754|gb|AAB24966.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 902
Score = 257 bits (656), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 136/269 (50%), Positives = 179/269 (66%), Gaps = 22/269 (8%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ S ++K D +D DD FLR IE+NMLS+M L+GI+ I KV+M +TD +K
Sbjct: 432 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFM---RTD-EK 481
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+TE+ F +W+L+TDG SL++V+S DVD RT SNDI EI QVLGIEAVR ++
Sbjct: 482 IPKVTENSGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNAL 541
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++
Sbjct: 542 LKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEI 601
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--------- 1690
LMDAA +E D ++GV+ENII+GQLP +GTG F++ L+ + K+ I L
Sbjct: 602 LMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPD 661
Query: 1691 TGMMGGPAGMFFGSAATPSSMIHNPLQTP 1719
T P+ + + TP HNP P
Sbjct: 662 TPGSQTPSYSYGDGSTTP---FHNPYDAP 687
Score = 70.5 bits (171), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 6/64 (9%)
Query: 12 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 71
FG LNCIF+DDNAEKL+LRIR++ S ++K D +D DD FLR IE+NMLS+M L
Sbjct: 412 FGLSLNCIFSDDNAEKLILRIRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVL 465
Query: 72 QFIR 75
+ I+
Sbjct: 466 RGIK 469
>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 257 bits (656), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 137/269 (50%), Positives = 179/269 (66%), Gaps = 22/269 (8%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ S ++K D +D DD FLR IE+NMLS+M L+GI+ I KV+M +TD K
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFM---RTDDKI 1307
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ TE+G F +W+L+TDG SL++V+S DVD RT SNDI EI QVLGIEAVR ++
Sbjct: 1308 PKV-TENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNAL 1366
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++
Sbjct: 1367 LKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEI 1426
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--------- 1690
LMDAA +E D ++GV+ENII+GQLP +GTG F++ L+ + K+ I L
Sbjct: 1427 LMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPD 1486
Query: 1691 TGMMGGPAGMFFGSAATPSSMIHNPLQTP 1719
T P+ + + TP HNP P
Sbjct: 1487 TPGSQTPSYSYGDGSTTP---FHNPYDAP 1512
Score = 70.9 bits (172), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 12 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 71
FG LNCIF+DDNAEKL+LRIR++ S ++K D +D DD FLR IE+NMLS+M L
Sbjct: 1237 FGLSLNCIFSDDNAEKLILRIRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVL 1290
Query: 72 QFIR-----IMNSDDSKMQDEEDAVDKMEDDMFL 100
+ I+ M +DD + E+ + ++ L
Sbjct: 1291 RGIKGIKKVFMRTDDKIPKVTENGGFGVREEWIL 1324
>gi|356605938|gb|AET25000.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 13
KK-2011]
Length = 623
Score = 256 bits (655), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 118/163 (72%), Positives = 137/163 (84%), Gaps = 1/163 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQGI I KVYM+ P TD KK
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGIPQIAKVYMNQPNTDDKK 520
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT G FKAI +W+LETDGT+L++VLSER +DPVRT SNDICEIF VLGIEAVRK++
Sbjct: 521 RIVITPEGGFKAITEWILETDGTALLRVLSERQIDPVRTSSNDICEIFAVLGIEAVRKAI 580
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 581 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 623
Score = 98.2 bits (243), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+E+I +GFG+D++ I+ DDNAEKLV R+RI D S EE+ V+KMEDD+FLRC
Sbjct: 431 METIAERIQSGFGNDVHTIYTDDNAEKLVFRLRIAGEDKSGEAQEEN-VEKMEDDVFLRC 489
Query: 61 IEANMLSDMTLQFI 74
IEANML+D+TLQ I
Sbjct: 490 IEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI D S EE+ V+KMEDD+FLRCIEANML+D+TLQ I
Sbjct: 462 LRIAGEDKSGEAQEEN-VEKMEDDVFLRCIEANMLADLTLQGI 503
>gi|157841366|gb|ABV83137.1| RNA polymerase 2 [Rhabditis rainai]
Length = 618
Score = 256 bits (654), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 138/161 (85%), Gaps = 1/161 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH P TD KK
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IIT G+F+ I+DW+LETDGT+L++VLSE +D VRT SNDICEIF+VLGIEAVRKS+
Sbjct: 518 RVIITPEGDFQYISDWILETDGTALLRVLSEPSIDAVRTTSNDICEIFEVLGIEAVRKSI 577
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1620
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 578 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 618
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 67/91 (73%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFGDDLN I+ DDNA+KLV R+RI N DD K EE+ VDKMEDD+FLRC
Sbjct: 428 MEKIADRIHHGFGDDLNVIYTDDNADKLVFRLRIANVDD-KSGAEEEQVDKMEDDVFLRC 486
Query: 61 IEANMLSDMTLQ--------FIRIMNSDDSK 83
IE+NMLSD+TLQ ++ N+DD K
Sbjct: 487 IESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 167
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 209
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 251
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 293
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 335
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 377
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 419
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 461
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 503
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 545
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 587
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 629
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 671
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 713
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 755
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 797
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 839
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 881
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 923
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 965
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1007
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1049
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1091
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1133
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1175
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1217
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1259
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1301
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1343
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1385
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1427
+RI N DD K EE+ VDKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 459 LRIANVDD-KSGAEEEQVDKMEDDVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKK 517
>gi|157841478|gb|ABV83205.1| RNA polymerase 2 [Pellioditis sp. JU274]
Length = 526
Score = 256 bits (654), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 117/163 (71%), Positives = 138/163 (84%), Gaps = 1/163 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQGI+ I KVYMH P TD KK
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQQISKVYMHKPSTDDKK 423
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+I I G FK+ A+W+LETDG L++VLSE+++DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 424 KIEIAPDGSFKSKAEWILETDGIGLLRVLSEQNIDPVRTTSNDICEIFEVLGIEAVRKSI 483
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINR
Sbjct: 484 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 526
Score = 102 bits (253), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 63/75 (84%), Gaps = 1/75 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++K+++GFGDDLN I+ DDNA+KLV R+RI N DD K + E+ VDKMEDD+FLRC
Sbjct: 334 MEQIADKVHSGFGDDLNVIYTDDNADKLVFRLRITNQDD-KSSESEEQVDKMEDDVFLRC 392
Query: 61 IEANMLSDMTLQFIR 75
IE+NMLS++TLQ I+
Sbjct: 393 IESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 159
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 201
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 243
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 285
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 327
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 369
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 411
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 453
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 495
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 537
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 579
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 621
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 663
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 705
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 747
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 789
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 831
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 873
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 915
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 957
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 999
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1041
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1083
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1125
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1167
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1209
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1251
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1293
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1335
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1377
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1419
+RI N DD K + E+ VDKMEDD+FLRCIE+NMLS++TLQ I+
Sbjct: 365 LRITNQDD-KSSESEEQVDKMEDDVFLRCIESNMLSELTLQGIQ 407
>gi|38232293|gb|AAR14982.1| RNA polymerase II largest subunit [Limnadia lenticularis]
Length = 137
Score = 255 bits (652), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/133 (88%), Positives = 128/133 (96%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQGIE+IGKVYMHLPQTD KK
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGIESIGKVYMHLPQTDQKK 64
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAIA+WLLETDGTSL++VLSERDVDPVRT+SNDICEIF VLGIEAVRKSV
Sbjct: 65 RIVITETGEFKAIAEWLLETDGTSLIRVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSV 124
Query: 1580 EKEMNTVLQFYGL 1592
EKEMN VLQFYGL
Sbjct: 125 EKEMNMVLQFYGL 137
Score = 84.0 bits (206), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/47 (87%), Positives = 44/47 (93%)
Query: 28 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 74
LVLRIRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 1 LVLRIRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 74 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 116
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSK Q+EE+ VDKMEDDMFLRCIEANMLSD+TLQ I
Sbjct: 5 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDLTLQGI 47
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 255 bits (651), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/284 (47%), Positives = 185/284 (65%), Gaps = 29/284 (10%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF---KAIADWLLE 1538
DD FLR + N L +TLQG+E I KVYM T ++ +G K + +W+LE
Sbjct: 1305 DDTFLRKLIPNYLWPLTLQGLEDIAKVYM----TQKNRKHFHPVTGALVNDKNVKEWVLE 1360
Query: 1539 TDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRH 1598
TDG+SL+ LS+ +VD RT SNDI EI +VLG+EAVR+S+ KEM+ V YG+Y+NYRH
Sbjct: 1361 TDGSSLLLALSQPNVDVTRTVSNDIVEIMRVLGVEAVRQSLFKEMHAVYSLYGIYINYRH 1420
Query: 1599 LALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSEN 1658
LALLCDVMTA+GH+MA+TRHGIN DTG LMRCSFEETV++L+ AA H+E D +RG SEN
Sbjct: 1421 LALLCDVMTARGHIMAVTRHGINGLDTGPLMRCSFEETVEILVTAAQHSETDWLRGPSEN 1480
Query: 1659 IIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM---MGG---PAGMFFGSAA-TPSSM 1711
II+GQL +GTG FDLLL+ + + +E+P G+ M G P G+ SA +P ++
Sbjct: 1481 IILGQLAPVGTGYFDLLLNEKMLEHAVEMPQTFGVNAFMDGMFDPLGISSPSAGLSPMAV 1540
Query: 1712 ----------IHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSP 1745
+++P +P N + + A + S F+P+ LSP
Sbjct: 1541 TQYHTNEGYSVYSP-NSPSNAAFSPAGNAS----FSPAYGALSP 1579
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS-----DDSKMQDEEDAV-DKMED 54
ME ++EKI A FG+DL+ IF+DDNA+KL+L+IR++ +S ++ ED + D
Sbjct: 1246 MERVAEKITADFGNDLHVIFSDDNADKLILQIRMLKKTSEGDGESGDKNPEDELRSGAAD 1305
Query: 55 DMFLRCIEANMLSDMTLQ 72
D FLR + N L +TLQ
Sbjct: 1306 DTFLRKLIPNYLWPLTLQ 1323
>gi|48869087|gb|AAT47141.1| RNA polymerase 2 [Prodontorhabditis wirthi]
Length = 630
Score = 254 bits (649), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 133/161 (82%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI D K E+ VDKMEDD FLRCIEANMLSD++L GI AIGKVYMH P TD KK
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R IT G KAIADWLLETDGT+L+KVLSERD+D +RT SNDICEIF+VLGIEAVRK++
Sbjct: 530 RFXITREGGSKAIADWLLETDGTALLKVLSERDIDQIRTSSNDICEIFEVLGIEAVRKAI 589
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1620
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGI
Sbjct: 590 EREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 630
Score = 102 bits (254), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 8/91 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E I+ KI+AGFGDDLN I+ DDNAEKLVLR+RI D K E+ VDKMEDD FLRC
Sbjct: 439 LEHIANKIHAGFGDDLNVIYTDDNAEKLVLRLRIAGGSDDKGDVGEEQVDKMEDDTFLRC 498
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD++L I + N+DD K
Sbjct: 499 IEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+RI D K E+ VDKMEDD FLRCIEANMLSD++L I + N+DD K
Sbjct: 470 LRIAGGSDDKGDVGEEQVDKMEDDTFLRCIEANMLSDLSLLGIPAIGKVYMHKPNTDDKK 529
>gi|157841364|gb|ABV83136.1| RNA polymerase 2 [Rhabditis sp. SB347]
Length = 621
Score = 253 bits (646), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 134/156 (85%), Gaps = 2/156 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQGI +IGKVYMH P+TD KK
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGITSIGKVYMHKPKTDDKK 525
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IIT G FKAI +WLLETDGT+L+KVLSER VD VRT SNDICEIF+VLGIEAVRKS+
Sbjct: 526 RMIITPEGAFKAIREWLLETDGTALLKVLSERHVDAVRTSSNDICEIFEVLGIEAVRKSI 585
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 586 EKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 621
Score = 103 bits (258), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GFGDDLN I+ DDNAEKLV RIR+ N DD EE+ +DKMEDD+FLRC
Sbjct: 437 MEQIADKIHQGFGDDLNVIYTDDNAEKLVFRIRLTNQDDKGA--EEEQIDKMEDDVFLRC 494
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 495 IESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IR+ N DD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 468 IRLTNQDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 508
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 253 bits (645), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 191/334 (57%), Gaps = 51/334 (15%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIM+ ++ K+Q + EDD FL+ +E NML+ M L+GIE + KVY+ +
Sbjct: 1300 IRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIR----EGPS 1355
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ G FK + +W+L+TDGT+L+ V+ VD RT SNDI EI QVLGIEAVR+++
Sbjct: 1356 THWFDDVG-FKMMNEWMLDTDGTNLLDVMCYPQVDATRTISNDIVEIIQVLGIEAVRRAL 1414
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+ V+ F G YVNYRHLA LCDVMT +GHLMAITRHGINR D+G L+RCSFEETV++
Sbjct: 1415 LNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEI 1474
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI------------ 1687
LMDAA +E DP+ GVSEN+++GQL +GTG DL+LDA+K + IE
Sbjct: 1475 LMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAIEYEASEIQQVMQGL 1534
Query: 1688 -------------PLATGMMGGP------------------AGMF--FGSAATPSSMIHN 1714
P+AT P AG F S A+P M +
Sbjct: 1535 DNEWRSPDQGPGTPMATPFASTPGFSASSPFSPGGGSFSPAAGAFSPMASPASPGFMAAS 1594
Query: 1715 PLQTPHNT-SLTNATHQSRDKAFAPSELFLSPDS 1747
P +P + + T+ + A++P+ SP S
Sbjct: 1595 PAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTS 1628
Score = 73.6 bits (179), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M I+ ++ + +G DL+CIF DDNA++LVLRIRIM+ ++ K+Q + EDD FL+
Sbjct: 1269 MGEIAAQVESEYGQDLSCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKR 1328
Query: 61 IEANMLSDMTLQFI 74
+E NML+ M L+ I
Sbjct: 1329 VEHNMLTQMKLRGI 1342
>gi|316997001|dbj|BAJ52628.1| RNA polymerase II largest subunit [Stephanoeca diplocostata]
Length = 999
Score = 253 bits (645), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 126/218 (57%), Positives = 159/218 (72%), Gaps = 5/218 (2%)
Query: 1474 EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD--SKKRIIITESGEFKA 1531
E A D+ ED L+ IE N+LS+M+L GI+ I +VY+ P+ D +K RI I E G+F
Sbjct: 772 ESASDEAEDHELLQQIEHNLLSEMSLSGIQDISRVYIVTPKEDEKAKHRIFINEDGKFDT 831
Query: 1532 IADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYG 1591
I + LETDG+ LM + ER VD VRT NDICEIF LGIEAVRKS++ EM+ V+ F G
Sbjct: 832 INEVHLETDGSDLMATMRERGVDCVRTTCNDICEIFYCLGIEAVRKSIDTEMSAVISFGG 891
Query: 1592 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 1651
YVN RHL+LLCD+MT++G+LMAITRHGINRQ+TGALMRCSFEETVD+LM+AAAHAE D
Sbjct: 892 SYVNQRHLSLLCDIMTSRGYLMAITRHGINRQNTGALMRCSFEETVDILMEAAAHAENDR 951
Query: 1652 MRGVSENIIMGQLPRMGTGCFDLLLD---AEKCKDGIE 1686
+ GVS N+++G L GTG F LL + A+ C G +
Sbjct: 952 LEGVSGNLMVGNLAPCGTGTFGLLFEPGHAQGCHRGAQ 989
Score = 41.6 bits (96), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 1 MEAISEKINAGFGDDLNCIFN-----DDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD 55
M+ ++EK+N F DL CI + D++ + LV+RIR+ +E A D+ ED
Sbjct: 727 MDVLAEKVNESFKRDLQCIVSDDNDFDEDEDHLVMRIRLRTQG-----KDESASDEAEDH 781
Query: 56 MFLRCIEANMLSDMTLQFIR 75
L+ IE N+LS+M+L I+
Sbjct: 782 ELLQQIEHNLLSEMSLSGIQ 801
>gi|50346879|gb|AAT75146.1| RNA polymerase 2 [Caenorhabditis japonica]
Length = 608
Score = 253 bits (645), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 115/154 (74%), Positives = 133/154 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 514
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 515 PEGGFKAVADWILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMD 574
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
V+ F G YVNYRHLALLCDVMTAKGHLMAITRH
Sbjct: 575 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITRH 608
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 64/91 (70%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG D++ I+ DDNAEKLV R+RI +D +E+ VDKMEDD+FLRC
Sbjct: 420 MEMIADRIHGGFGSDVHTIYTDDNAEKLVFRLRIA-GEDKGADTQEEQVDKMEDDVFLRC 478
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 479 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 252 bits (644), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 191/334 (57%), Gaps = 51/334 (15%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIM+ ++ K+Q + EDD FL+ +E NML+ M L+GIE + KVY+ +
Sbjct: 1300 IRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIR----EGPS 1355
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ G FK + +W+L+TDGT+L+ V+ VD RT SNDI EI QVLGIEAVR+++
Sbjct: 1356 THWFDDVG-FKMMNEWMLDTDGTNLLDVMCYPQVDSTRTISNDIVEIIQVLGIEAVRRAL 1414
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+ V+ F G YVNYRHLA LCDVMT +GHLMAITRHGINR D+G L+RCSFEETV++
Sbjct: 1415 LNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEI 1474
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI------------ 1687
LMDAA +E DP+ GVSEN+++GQL +GTG DL+LDA+K + IE
Sbjct: 1475 LMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAIEYEASEIQQVMQGL 1534
Query: 1688 -------------PLATGMMGGP------------------AGMF--FGSAATPSSMIHN 1714
P+AT P AG F S A+P M +
Sbjct: 1535 DNEWRSPDQGPGTPMATPFASTPGFSASSPFSPGGGSFSPAAGAFSPMASPASPGFMAAS 1594
Query: 1715 PLQTPHNT-SLTNATHQSRDKAFAPSELFLSPDS 1747
P +P + + T+ + A++P+ SP S
Sbjct: 1595 PAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTS 1628
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M I+ ++ A +G DL+CIF DDNA++LVLRIRIM+ ++ K+Q + EDD FL+
Sbjct: 1269 MGEIAAQVEAEYGQDLSCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKR 1328
Query: 61 IEANMLSDMTLQFI 74
+E NML+ M L+ I
Sbjct: 1329 VEHNMLTQMKLRGI 1342
>gi|157841420|gb|ABV83169.1| RNA polymerase 2 [Phasmarhabditis sp. EM434]
Length = 204
Score = 251 bits (641), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/156 (75%), Positives = 133/156 (85%), Gaps = 2/156 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQGI I KVYMH P TD KK
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGIPQISKVYMHKPTTDDKK 108
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IIT G FKAIA+W+LETDGT+L+KVLSER +DP+RT SNDICEIF+VLGIEAVRKS+
Sbjct: 109 RVIITPEGGFKAIAEWILETDGTALLKVLSERHIDPIRTTSNDICEIFEVLGIEAVRKSI 168
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 169 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 204
Score = 103 bits (256), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 60/74 (81%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EK+N GFGDDLN I+ DDNA+KLV R+RI +DD Q EE+ VDKMEDD+FLRC
Sbjct: 20 MEQIAEKVNQGFGDDLNVIYTDDNADKLVFRLRISATDDK--QAEEEQVDKMEDDVFLRC 77
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD+ LQ I
Sbjct: 78 IEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI +DD Q EE+ VDKMEDD+FLRCIEANMLSD+ LQ I
Sbjct: 51 LRISATDDK--QAEEEQVDKMEDDVFLRCIEANMLSDLALQGI 91
>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
Length = 1764
Score = 250 bits (638), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 193/301 (64%), Gaps = 25/301 (8%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RIMN D SK + VD+ +DD+FL+ IE+NML++M L+GI I KV++ K
Sbjct: 1276 VRIMNDDVSKGGE----VDQSDDDVFLKKIESNMLTEMALRGIPDIHKVFIR-----EHK 1326
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R E FKA +W+L+T+G +++ V+ DVD RT SN + E+ +VLGIEAVR+++
Sbjct: 1327 RQRFDEHEGFKAETEWMLDTEGVNMLAVMCNEDVDATRTVSNHLIEVIEVLGIEAVRQAL 1386
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1387 LKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1446
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM------ 1693
L+DAA AEAD +RGV+ENI++GQL +GTG F LLL+ + + IE+ L + M
Sbjct: 1447 LLDAAVFAEADHLRGVTENIMLGQLAPIGTGDFGLLLNDKMLEHAIELQLPSYMETADFG 1506
Query: 1694 MGGPAGMFFGSA-ATPSSMIHNPLQTPHNTSLTNA------THQSRDKAFAPSELFLSPD 1746
+GG G +PS ++ L+ + +T+A + A++PS SP
Sbjct: 1507 LGGVTGTPHHEGMMSPSYLLSPNLRA---SPITDAQFSPYVAYSPASPAYSPSSPGYSPA 1563
Query: 1747 S 1747
S
Sbjct: 1564 S 1564
Score = 82.8 bits (203), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 8/112 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
I+EKIN F DDL CIFNDDNAEKL+LR+RIMN D SK + VD+ +DD+FL+ IE+
Sbjct: 1248 IAEKINLEFVDDLTCIFNDDNAEKLILRVRIMNDDVSKGGE----VDQSDDDVFLKKIES 1303
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 111
NML++M L+ I ++ + + + +E K E + L NML+ M
Sbjct: 1304 NMLTEMALRGIPDIHKVFIREHKRQRFDEHEGFKAETEWMLDTEGVNMLAVM 1355
>gi|157841386|gb|ABV83147.1| RNA polymerase 2 [Poikilolaimus regenfussi]
Length = 620
Score = 249 bits (637), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 112/162 (69%), Positives = 137/162 (84%), Gaps = 1/162 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZGIZ+I KV MH P TD KK
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGIZSIAKVCMHXPTTDDKK 518
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R IJT G FK+I +WLL TDGT+L+KVLSE++V P+RT SNDICEIF+VLGIEAVRK++
Sbjct: 519 RTIJTADGSFKSIPEWLLXTDGTALLKVLSEQNVHPIRTTSNDICEIFEVLGIEAVRKAI 578
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1621
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMA TRHGIN
Sbjct: 579 EREMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAXTRHGIN 620
Score = 102 bits (255), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+++I+AGFG DLN I+ DDNAEKLV R+RI N+D+ K + EE VDKMEBD+FL C
Sbjct: 429 MEAIADRIHAGFGGDLNVIYTDDNAEKLVFRLRIANADNDKGESEEQ-VDKMEBDVFLXC 487
Query: 61 IEANMLSDMTLQFI 74
+E+NMLSD+TLZ I
Sbjct: 488 VESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N+D+ K + EE VDKMEBD+FL C+E+NMLSD+TLZ I
Sbjct: 460 LRIANADNDKGESEEQ-VDKMEBDVFLXCVESNMLSDLTLZGI 501
>gi|157841480|gb|ABV83206.1| RNA polymerase 2 [Pellioditis mediterranea]
Length = 618
Score = 249 bits (637), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 117/156 (75%), Positives = 134/156 (85%), Gaps = 2/156 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQGI +I KVYMH P TD KK
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGITSISKVYMHKPTTDDKK 522
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L+KVLSE+ +DP+RT SNDICEIF+VLGIEAVRK++
Sbjct: 523 RVVITPEGGFKAIPEWLLETDGTALLKVLSEQHIDPIRTSSNDICEIFEVLGIEAVRKAI 582
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 583 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 618
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 61/74 (82%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GFGDDLN I+ DDNA+KLV R+RI N DD K DEE VDKMEDD+FLRC
Sbjct: 434 MEQIADKIHQGFGDDLNVIYTDDNADKLVFRLRITNQDD-KGADEEQ-VDKMEDDVFLRC 491
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD+TLQ I
Sbjct: 492 IEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N DD K DEE VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 465 LRITNQDD-KGADEEQ-VDKMEDDVFLRCIEANMLSDLTLQGI 505
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 249 bits (636), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/318 (46%), Positives = 202/318 (63%), Gaps = 32/318 (10%)
Query: 1444 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1503
L CI ++ +D + IR++ S+D M+ E D +DD FLR IE+NMLS M L+GI+
Sbjct: 1243 LNCIFSDDNADKLILRIRMVESED--MKTEND-----DDDQFLRRIESNMLSGMVLRGIK 1295
Query: 1504 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1563
I KV+M +TD K I+ + G + +W+L+TDG SL++V+S DVD RT SNDI
Sbjct: 1296 GIKKVFM---RTDDKIPKIL-DDGSYGNREEWILDTDGVSLLEVMSHPDVDHSRTTSNDI 1351
Query: 1564 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1623
EI QVLGIEAVR ++ KE+ V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR
Sbjct: 1352 VEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAVLADVMTYRGHLMAITRHGINRV 1411
Query: 1624 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
+TG LMRCSFEETV++LMDAA +E D ++GV+ENII+GQLP +GTG F++ L+ + K+
Sbjct: 1412 ETGPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMVKN 1471
Query: 1684 GIEIPLATGMMGGPAGMFF---GSAATP-------SSMIHNPLQTPHNTSLTNATHQSRD 1733
I L P+ + + + TP S+ HNP P S N T++
Sbjct: 1472 AHSIALPE-----PSAISYPDTPGSQTPSYSYDGSSTPFHNPYDAP--LSPFNETYRG-- 1522
Query: 1734 KAFAPSELFLSPDSRYPY 1751
F+PS + SP + Y
Sbjct: 1523 -DFSPSAMN-SPAYKGGY 1538
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 7/64 (10%)
Query: 12 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 71
FG +LNCIF+DDNA+KL+LRIR++ S+D M+ E D +DD FLR IE+NMLS M L
Sbjct: 1239 FGLNLNCIFSDDNADKLILRIRMVESED--MKTEND-----DDDQFLRRIESNMLSGMVL 1291
Query: 72 QFIR 75
+ I+
Sbjct: 1292 RGIK 1295
>gi|157841500|gb|ABV83216.1| RNA polymerase 2 [Pelodera pseudoteres]
Length = 366
Score = 249 bits (635), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/154 (73%), Positives = 134/154 (87%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKK 272
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IITE G FKAI +W+LETDGT+L++VLSE++VDP+RT SNDICEIF+VLGIEAVRK +
Sbjct: 273 RMIITEEGGFKAIPEWILETDGTALLRVLSEQNVDPIRTSSNDICEIFEVLGIEAVRKGI 332
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 333 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLM 366
Score = 103 bits (257), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 62/74 (83%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME+I+++++ GFGDDLN I+ DDNA+KLV R+RI N D+S + E+ VDKMEDD+FLRC
Sbjct: 182 MESIADRVHQGFGDDLNVIYTDDNADKLVFRLRITNQDNSDKGESEEQVDKMEDDVFLRC 241
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 242 IESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 213 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 255
>gi|157841474|gb|ABV83203.1| RNA polymerase 2 [Oscheius tipulae]
Length = 446
Score = 248 bits (634), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 134/158 (84%), Gaps = 1/158 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQGI +I KVYM+ P TD KK
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMYKPNTDDKK 348
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
++IIT G+FK I+DW+LETDGT+L++VLSE +DP +T SNDICEIF+VLGIEAVRKS+
Sbjct: 349 KVIITPEGDFKHISDWILETDGTALLRVLSEPSIDPAKTTSNDICEIFEVLGIEAVRKSI 408
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1617
EKEMN V+ F G YVNYRHLALLCDVMTAKGHLMA TR
Sbjct: 409 EKEMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAXTR 446
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+AGFGDDLN I+ DDNAEKLV RIRI N D K+ +EE +DKMEDDMFLRC
Sbjct: 259 MEQIADKIHAGFGDDLNVIYTDDNAEKLVFRIRITNQGDDKLAEEEQ-IDKMEDDMFLRC 317
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 318 IESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRI N D K+ +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 290 IRITNQGDDKLAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 331
>gi|157841429|gb|ABV83175.1| RNA polymerase 2 [Rhabditis blumi]
Length = 193
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/156 (73%), Positives = 133/156 (85%), Gaps = 1/156 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH P TD KK
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+IT G F+AI DW+LETDGT+L++VLSE ++DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 98 RIVITPEGTFQAIPDWILETDGTALLRVLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSI 157
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
E+EM V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 158 EREMYNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 193
Score = 104 bits (259), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 67/91 (73%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GFGDDLN I+ DDNA+KLV R+RI N DD K EE+ +DKMEDD+FLRC
Sbjct: 8 MEKIADKIHHGFGDDLNVIYTDDNADKLVFRLRIANPDD-KAGAEEEQIDKMEDDVFLRC 66
Query: 61 IEANMLSDMTLQ--------FIRIMNSDDSK 83
IE+NMLSD+TLQ ++ N+DD K
Sbjct: 67 IESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 167
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 209
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 251
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 293
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 335
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 377
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 419
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 461
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 503
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 545
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 587
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 629
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 671
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 713
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 755
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 797
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 839
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 881
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 923
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 965
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1007
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1049
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1091
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1133
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1175
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1217
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1259
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1301
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1343
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1385
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1427
+RI N DD K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 39 LRIANPDD-KAGAEEEQIDKMEDDVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKK 97
>gi|157841434|gb|ABV83178.1| RNA polymerase 2 [Bunonema reticulatum]
Length = 614
Score = 248 bits (632), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/201 (61%), Positives = 147/201 (73%), Gaps = 17/201 (8%)
Query: 1424 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1472
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1473 EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAI 1532
EE VDKMEDD FLRCIEANMLS++TLQGIE+I KVYMH P TD KKR++IT G FKA+
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGIESITKVYMHKPTTDDKKRMVITPEGGFKAV 525
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
A+WLLETDGT+L+KVLS+RDVDPVRT SNDICEIF VLGIEAVRK++E+EM+ V+ F G
Sbjct: 526 AEWLLETDGTALLKVLSDRDVDPVRTTSNDICEIFAVLGIEAVRKAIEREMHQVISFDGS 585
Query: 1593 YVNYRHLALLCDVMTAKGHLM 1613
YVNYRHLALLCDVMTAKGHL
Sbjct: 586 YVNYRHLALLCDVMTAKGHLW 606
Score = 100 bits (250), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M+A+++ I GFGDDLN ++ DDNAEKLV+RIRI NSD K EE VDKMEDD FLRC
Sbjct: 423 MDAVADCIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGATEEQ-VDKMEDDGFLRC 481
Query: 61 IEANMLSDMTLQFI 74
IEANMLS++TLQ I
Sbjct: 482 IEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 80 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 128
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 129 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 122 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 170
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 171 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 164 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 212
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 213 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 206 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 254
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 255 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 248 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 296
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 297 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 290 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 338
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 339 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 332 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 380
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 381 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 374 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 422
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 423 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 416 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 464
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 465 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 458 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 506
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 507 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 500 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 548
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 549 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 542 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 590
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 591 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 584 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 632
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 633 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 626 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 674
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 675 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 668 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 716
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 717 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 710 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 758
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 759 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 752 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 800
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 801 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 794 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 842
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 843 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 836 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 884
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 885 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 878 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 926
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 927 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 920 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 968
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 969 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 962 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1010
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1011 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 1004 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1052
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1053 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 1046 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1094
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1095 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 1088 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1136
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1137 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 1130 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1178
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1179 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 1172 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1220
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1221 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 1214 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1262
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1263 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 1256 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1304
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1305 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 1298 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1346
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1347 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 1340 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF-----------IRIMNSDDSKMQD 1388
D +M D++ +D + D CI D+ + + IRI NSD K
Sbjct: 412 DRKRMTDKKLTMDAVAD-----CIRRGFGDDLNIVYTDDNAEKLVIRIRIANSDAEKGAT 466
Query: 1389 EEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
EE VDKMEDD FLRCIEANMLS++TLQ I
Sbjct: 467 EEQ-VDKMEDDGFLRCIEANMLSELTLQGI 495
>gi|356605940|gb|AET25001.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 12
KK-2010]
Length = 604
Score = 248 bits (632), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/152 (73%), Positives = 132/152 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 512
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
E G FK+I +W+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 513 EEGGFKSITEWILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMH 572
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1616
V+ F G YVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 573 NVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 604
Score = 97.4 bits (241), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I++GFG D++ I+ DDNAEKLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 418 MEMIADRIHSGFGQDVHTIYTDDNAEKLVFRLRIAG-EDKAAEGQEEQVDKMEDDVFLRC 476
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 477 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 453 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 507
>gi|50346876|gb|AAT75145.1| RNA polymerase 2 [Rhabditella axei]
Length = 621
Score = 247 bits (631), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 115/156 (73%), Positives = 132/156 (84%), Gaps = 2/156 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQG+ I KVYMH P TD KK
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGVTQISKVYMHKPTTDDKK 525
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT G FKAI +WLLETDGT+L+KVLSE+ +DP RT SNDICEIF+VLGIEAVRKS+
Sbjct: 526 RIIITPEGAFKAIREWLLETDGTALLKVLSEQHIDPARTTSNDICEIFEVLGIEAVRKSI 585
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
E+EMN V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 586 EREMNNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 621
Score = 100 bits (250), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GFGDDLN I+ DDNA+KLV R+RI +SDD EE+ +DKMEDD+FLRC
Sbjct: 437 MEQIADKIHQGFGDDLNVIYTDDNADKLVFRLRITSSDDKGA--EEEQIDKMEDDVFLRC 494
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ +
Sbjct: 495 IESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI +SDD EE+ +DKMEDD+FLRCIE+NMLSD+TLQ +
Sbjct: 468 LRITSSDDKGA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGV 508
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 247 bits (631), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 177/262 (67%), Gaps = 12/262 (4%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++M L+GI I KV++ +
Sbjct: 1253 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFI---KQVR 1304
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K R E G FK +W+L+T+G +L+ V+ DVDP RT SN + EI +VLGIEAVR+
Sbjct: 1305 KSRF--DEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRR 1362
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1363 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1422
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAAA+AE D +RGV+ENI++GQL +GTG +L L+ E K+ IE+ L + M G
Sbjct: 1423 DILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLE 1482
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
GM + + H + +P
Sbjct: 1483 FGMTPARSPVSGTPYHEGMMSP 1504
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNA+KL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1225 IAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDES-----AEDDVFLKKI 1279
Query: 62 EANMLSDMTLQFIRIMN 78
E+NML++M L+ I +N
Sbjct: 1280 ESNMLTEMALRGIPDIN 1296
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 247 bits (630), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 177/262 (67%), Gaps = 12/262 (4%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++M L+GI I KV++ +
Sbjct: 1279 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFI---KQVR 1330
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K R E G FK +W+L+T+G +L+ V+ DVDP RT SN + EI +VLGIEAVR+
Sbjct: 1331 KSRF--DEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRR 1388
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1389 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1448
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAAA+AE D +RGV+ENI++GQL +GTG +L L+ E K+ IE+ L + M G
Sbjct: 1449 DILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLE 1508
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
GM + + H + +P
Sbjct: 1509 FGMTPARSPVSGTPYHEGMMSP 1530
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNA+KL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1251 IAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDES-----AEDDVFLKKI 1305
Query: 62 EANMLSDMTLQFIRIMN 78
E+NML++M L+ I +N
Sbjct: 1306 ESNMLTEMALRGIPDIN 1322
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 247 bits (630), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 177/262 (67%), Gaps = 12/262 (4%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++M L+GI I KV++ +
Sbjct: 1259 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFI---KQVR 1310
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K R E G FK +W+L+T+G +L+ V+ DVDP RT SN + EI +VLGIEAVR+
Sbjct: 1311 KSRF--DEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRR 1368
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1369 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1428
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAAA+AE D +RGV+ENI++GQL +GTG +L L+ E K+ IE+ L + M G
Sbjct: 1429 DILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLE 1488
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
GM + + H + +P
Sbjct: 1489 FGMTPARSPVSGTPYHEGMMSP 1510
Score = 80.5 bits (197), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNA+KL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1231 IAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDES-----AEDDVFLKKI 1285
Query: 62 EANMLSDMTLQFIRIMN 78
E+NML++M L+ I +N
Sbjct: 1286 ESNMLTEMALRGIPDIN 1302
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 247 bits (630), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 177/262 (67%), Gaps = 12/262 (4%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++M L+GI I KV++ +
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFI---KQVR 1309
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K R E G FK +W+L+T+G +L+ V+ DVDP RT SN + EI +VLGIEAVR+
Sbjct: 1310 KSRF--DEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRR 1367
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1368 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1427
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAAA+AE D +RGV+ENI++GQL +GTG +L L+ E K+ IE+ L + M G
Sbjct: 1428 DILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLE 1487
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
GM + + H + +P
Sbjct: 1488 FGMTPARSPVSGTPYHEGMMSP 1509
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNA+KL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1230 IAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDES-----AEDDVFLKKI 1284
Query: 62 EANMLSDMTLQFIRIMN 78
E+NML++M L+ I +N
Sbjct: 1285 ESNMLTEMALRGIPDIN 1301
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 247 bits (630), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 177/262 (67%), Gaps = 12/262 (4%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++M L+GI I KV++ +
Sbjct: 1259 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFI---KQVR 1310
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K R E G FK +W+L+T+G +L+ V+ DVDP RT SN + EI +VLGIEAVR+
Sbjct: 1311 KSRF--DEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRR 1368
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1369 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1428
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAAA+AE D +RGV+ENI++GQL +GTG +L L+ E K+ IE+ L + M G
Sbjct: 1429 DILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLE 1488
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
GM + + H + +P
Sbjct: 1489 FGMTPARSPVSGTPYHEGMMSP 1510
Score = 80.5 bits (197), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNA+KL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1231 IAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDES-----AEDDVFLKKI 1285
Query: 62 EANMLSDMTLQFIRIMN 78
E+NML++M L+ I +N
Sbjct: 1286 ESNMLTEMALRGIPDIN 1302
>gi|157841498|gb|ABV83215.1| RNA polymerase 2 [Pristionchus pacificus]
Length = 583
Score = 247 bits (630), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 113/156 (72%), Positives = 133/156 (85%), Gaps = 3/156 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQGIE+I KVYMH P TD KK
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGIESISKVYMHKPTTDDKK 487
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R IIT G FKAIA+W+LETDGT+L++VLSE++VDP RT SNDICEIF++LGIEAVRK++
Sbjct: 488 RTIITPDGSFKAIAEWILETDGTALLRVLSEKNVDPARTTSNDICEIFEILGIEAVRKAI 547
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 548 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAI 583
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+EKI+ GFGDDLN I+ DDNA+KLV R+RI N D D E+ VDKMEDD+FLRC
Sbjct: 400 MEAIAEKIHNGFGDDLNVIYTDDNADKLVFRLRITNQDKG---DSEEQVDKMEDDVFLRC 456
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 457 IESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 431 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 470
>gi|356605954|gb|AET25008.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 8
KK-2011]
Length = 604
Score = 246 bits (628), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 111/153 (72%), Positives = 132/153 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQGI AI KVYM+ P TD KKRI+IT
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKKRIVIT 511
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
+ G FK+I +W+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 512 DEGGFKSITEWILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMH 571
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1617
V+ F G YVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 572 NVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 604
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+AGFG D++ I+ DDNAEKLV R+RI DD + +E+ VDKMEDD+FLRC
Sbjct: 417 MEMIADRIHAGFGQDVHTIYTDDNAEKLVFRLRIAG-DDKAAEGQEEQVDKMEDDVFLRC 475
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
I ANMLSD+TLQ I + N+DD K
Sbjct: 476 IXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
DD + +E+ VDKMEDD+FLRCI ANMLSD+TLQ I + N+DD K
Sbjct: 452 GDDKAAEGQEEQVDKMEDDVFLRCIXANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
brevicollis]
Length = 1743
Score = 246 bits (627), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 195/333 (58%), Gaps = 25/333 (7%)
Query: 1419 RIMNSDDSKMQDEE-DAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAV 1477
RI+ + +K+ AV E D + + + D T+ IR+ +D+ +A
Sbjct: 1142 RILPENVAKLIKRAMGAVQDTERDTVMVHFQQGNIEDHTVMRIRLP-------RDKSEAD 1194
Query: 1478 DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP--QTDSKKRIIITESGEFKAIADW 1535
D + D +LR +E +L +TLQGI I + Y+ + K+RI I E GEFK +
Sbjct: 1195 DSLGPDAYLRLLEDRILHSITLQGIPDITRGYLVTGDSKQPGKQRIFINEEGEFKPQDQF 1254
Query: 1536 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1595
L+ETDG+S+ V ++R VD R+ SNDI EIF GIE RK++E EM V+ F G YVN
Sbjct: 1255 LVETDGSSIQSVFAQRYVDQERSTSNDIVEIFSTFGIEGARKAIEAEMYNVISFGGSYVN 1314
Query: 1596 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGV 1655
RHL+LLCD+MT KG+LMAITRHG+NRQ+TG LM+ SFEETVD+L++AAAH E D ++GV
Sbjct: 1315 ARHLSLLCDIMTTKGYLMAITRHGVNRQNTGVLMKASFEETVDILLEAAAHGETDYLKGV 1374
Query: 1656 SENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG---------GPAGMFFGSAA 1706
SENI++GQ+ GTGCFDLLLD ++ + +P+ G+ G G A + A
Sbjct: 1375 SENIMLGQVIPGGTGCFDLLLDQDRLQH--AVPVEPGLGGLFAKGGDANGAATPWGEGNA 1432
Query: 1707 TPSSMIHNPLQTPHNTSLTN-ATHQSRDKAFAP 1738
TP M TP N S Q+ F+P
Sbjct: 1433 TPFGMGG---MTPQNASSPYFGAGQTPIGGFSP 1462
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 162/227 (71%), Gaps = 5/227 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI++ ++ KMQ ++ EDD FL+ +E NML+ M L+G++++ KVY+ + +
Sbjct: 1269 IRIVSDEEEKMQRTGESTVGQEDDTFLKRVEHNMLTQMKLRGVQSVKKVYIR----EGRP 1324
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ G FK +W+L+TDGT+L+ VL VD RT SNDI EI QVLGIEAVR+++
Sbjct: 1325 THWFDDVG-FKMTTEWVLDTDGTNLLDVLCFPQVDGTRTISNDIVEIIQVLGIEAVRRAL 1383
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+ V+ F G YVNYRHLA L DVMT +GHLMAITRHGINR D+G L+RCSFEETV++
Sbjct: 1384 LNEIRQVISFDGAYVNYRHLACLADVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEI 1443
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE 1686
LMDAA +E DP+ GVSEN+++GQL +GTG DL+LDA+K D IE
Sbjct: 1444 LMDAAMFSEGDPLTGVSENVMLGQLAPLGTGITDLVLDAKKLTDAIE 1490
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M I+ +I + +G DL+CIF DDNA+KLVLRIRI++ ++ KMQ ++ EDD FL+
Sbjct: 1238 MSEIASQIESEYGQDLSCIFTDDNADKLVLRIRIVSDEEEKMQRTGESTVGQEDDTFLKR 1297
Query: 61 IEANMLSDMTLQFIR 75
+E NML+ M L+ ++
Sbjct: 1298 VEHNMLTQMKLRGVQ 1312
>gi|167527458|ref|XP_001748061.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773479|gb|EDQ87118.1| predicted protein [Monosiga brevicollis MX1]
Length = 1307
Score = 245 bits (625), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/265 (47%), Positives = 172/265 (64%), Gaps = 11/265 (4%)
Query: 1433 DAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEAN 1492
AV E D + + + D T+ IR+ +D+ +A D + D +LR +E
Sbjct: 721 GAVQDTERDTVMVHFQQGNIEDHTVMRIRLP-------RDKSEADDSLGPDAYLRLLEDR 773
Query: 1493 MLSDMTLQGIEAIGKVYMHLP--QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
+L +TLQGI I + Y+ + K+RI I E GEFK +L+ETDG+S+ V ++
Sbjct: 774 ILHSITLQGIPDITRGYLVTGDSKQPGKQRIFINEEGEFKPQDQFLVETDGSSIQSVFAQ 833
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
R VD R+ SNDI EIF GIE RK++E EM V+ F G YVN RHL+LLCD+MT KG
Sbjct: 834 RYVDQERSTSNDIVEIFSTFGIEGARKAIEAEMYNVISFGGSYVNARHLSLLCDIMTTKG 893
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+LMAITRHG+NRQ+TG LM+ SFEETVD+L++AAAH E D ++GVSENI++GQ+ GTG
Sbjct: 894 YLMAITRHGVNRQNTGVLMKASFEETVDILLEAAAHGETDYLKGVSENIMLGQVIPGGTG 953
Query: 1671 CFDLLLDAEKCKDGIEIPLATGMMG 1695
CFDLLLD ++ + +P+ G+ G
Sbjct: 954 CFDLLLDQDRLQH--AVPVEPGLGG 976
>gi|18736|emb|CAA36736.1| DNA-directed RNA polymerase [Glycine max]
Length = 977
Score = 245 bits (625), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/262 (49%), Positives = 175/262 (66%), Gaps = 19/262 (7%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN D K +QDE EDD+FL+ IE NML++MTL+GI I KV++ +
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDINKVFI-----KN 498
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K E+ FK+ +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 499 AKVQKFDENEGFKSNGEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 558
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
S+ E+ V+ F G YVNYRHLA+LC+ MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 559 SLLDELRIVISFDGSYVNYRHLAILCETMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 618
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT------ 1691
D+L+DAAA+AE D +RGV+ENII+GQL +GTG L L+ K+ IE+ L +
Sbjct: 619 DILLDAAAYAETDSLRGVTENIILGQLAPIGTGQCALYLNDGMLKNAIELQLPSYTDGLD 678
Query: 1692 -GMMGGPAGMFFGSAATPSSMI 1712
G+M G G+ +PS ++
Sbjct: 679 FGIMSGATPYHEGTMMSPSYLL 700
Score = 84.0 bits (206), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I++KIN F DDL+CIFNDDNAEKL+LRIRIMN D K +QDE EDD+FL+ I
Sbjct: 421 IAQKINLEFDDDLSCIFNDDNAEKLILRIRIMNDDAPKGEVQDE-----SAEDDVFLKKI 475
Query: 62 EANMLSDMTLQFIRIMN 78
E NML++MTL+ I +N
Sbjct: 476 ETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 116 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 162
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 200 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 246
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 284 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 330
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 368 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 414
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 452 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 498
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 536 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 582
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 620 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 666
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 704 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 750
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 788 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 834
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 872 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 918
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 956 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1002
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1040 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1086
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1124 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1170
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1208 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1254
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1292 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1338
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
Score = 40.8 bits (94), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1376 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1422
IRIMN D K +QDE EDD+FL+ IE NML++MTL+ I +N
Sbjct: 449 IRIMNDDAPKGEVQDE-----SAEDDVFLKKIETNMLTEMTLRGIPDIN 492
>gi|157841378|gb|ABV83143.1| RNA polymerase 2 [Mesorhabditis longespiculosa]
Length = 623
Score = 244 bits (622), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/156 (71%), Positives = 133/156 (85%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQGIE I KVYMH P TD KK
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI++T G+FKAI +WLLETDGT+L++VLS+ +VDPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 528 RIVVTPEGDFKAIPEWLLETDGTALLQVLSQANVDPVRTTSNDICEIFEVLGIEAVRKAI 587
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 588 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAI 623
Score = 97.1 bits (240), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 63/91 (69%), Gaps = 8/91 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAISE+I FG+DLN I+ DDNA+ LV RIRI + D+ K+ EE+ VDKMEDD FLR
Sbjct: 437 MEAISERIQQAFGEDLNVIYTDDNADSLVFRIRITSQDNDKVDTEEEQVDKMEDDAFLRA 496
Query: 61 IEANMLSDMTLQ--------FIRIMNSDDSK 83
+E NMLSD+TLQ ++ N+DD K
Sbjct: 497 LEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 167
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 209
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 251
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 293
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 335
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 377
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 419
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 461
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 503
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 545
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 587
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 629
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 671
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 713
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 755
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 797
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 839
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 881
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 923
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 965
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1007
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1049
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1091
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1133
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1175
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1217
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1259
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1301
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1343
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1385
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1427
IRI + D+ K+ EE+ VDKMEDD FLR +E NMLSD+TLQ ++ N+DD K
Sbjct: 468 IRITSQDNDKVDTEEEQVDKMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKK 527
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 243 bits (621), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 192/306 (62%), Gaps = 29/306 (9%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RIMN D SK + VD+ +DD+FL+ IE+NML++M L+GI I KV++ K
Sbjct: 1268 VRIMNDDVSKGGE----VDQSDDDVFLKKIESNMLTEMALRGIPDIHKVFIR-----EHK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R E FK +W+L+T+G +++ V+ DVD RT SN + E+ +VLGIEAVR+++
Sbjct: 1319 RQRFDEHEGFKTETEWMLDTEGVNMLAVMCNEDVDATRTVSNHLIEVIEVLGIEAVRQAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1379 LKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT-------- 1691
L+DAA AEAD +RGV+ENI++GQL +GTG F LLL+ + + IE+ L +
Sbjct: 1439 LLDAAVFAEADHLRGVTENIMLGQLAPIGTGDFGLLLNDKMLEHAIELQLPSYMETADFG 1498
Query: 1692 --GMMGGPA--GMFFGSAATPSSMIHNPLQ----TPHNTSLT--NATHQSRDKAFAPSEL 1741
G+ G P GM S ++ +P+ +P+ +T + A++P+
Sbjct: 1499 LGGVTGTPHHEGMMSPSYLLSPNLRASPITDAQFSPYVGGITFSPGAYSPLSPAYSPAG- 1557
Query: 1742 FLSPDS 1747
SP S
Sbjct: 1558 -YSPAS 1562
Score = 82.8 bits (203), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 8/112 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
I+EKIN F DDL CIFNDDNAEKL+LR+RIMN D SK + VD+ +DD+FL+ IE+
Sbjct: 1240 IAEKINLEFVDDLTCIFNDDNAEKLILRVRIMNDDVSKGGE----VDQSDDDVFLKKIES 1295
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 111
NML++M L+ I ++ + + + +E K E + L NML+ M
Sbjct: 1296 NMLTEMALRGIPDIHKVFIREHKRQRFDEHEGFKTETEWMLDTEGVNMLAVM 1347
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 243 bits (620), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/283 (47%), Positives = 183/283 (64%), Gaps = 18/283 (6%)
Query: 1444 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1503
L CI ++ +D + IR + +DSK +D DD FLR IEA MLS+M L GI
Sbjct: 1243 LNCIFSDDNADKLIIRIRTIEDNDSKTDGNDD------DDTFLRRIEAKMLSEMVLCGIR 1296
Query: 1504 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1563
I KV+M + D + R+ E+G + + +W+L+TDG +L++V+S DVD RT SNDI
Sbjct: 1297 GIKKVFM---RHDDQVRV--NENGAYFSKKEWVLDTDGVNLLEVMSHPDVDHSRTVSNDI 1351
Query: 1564 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1623
EI QVLGIEAVR ++ KE+ V+ F G YVNYRHLA+L DVMT +GHLMAI+RHGINR
Sbjct: 1352 IEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAISRHGINRV 1411
Query: 1624 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
++G LMRCSFEETV++LMDAA +E D ++GV+ENII+GQLP +GTG F++ L+ + K+
Sbjct: 1412 ESGPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMIKN 1471
Query: 1684 G--IEIPLATGMMG-----GPAGMFFGSAATPSSMIHNPLQTP 1719
I +P + MM G +TP +PL P
Sbjct: 1472 AHSIAMPEPSTMMSHYNEPGSQTPSHDGGSTPYHHPFSPLDAP 1514
Score = 60.8 bits (146), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
I++ I FG LNCIF+DDNA+KL++RIR + +DSK +D DD FLR IEA
Sbjct: 1232 ITQCIKRDFGR-LNCIFSDDNADKLIIRIRTIEDNDSKTDGNDD------DDTFLRRIEA 1284
Query: 64 NMLSDMTLQFIR-----IMNSDDSKMQDEEDA 90
MLS+M L IR M DD +E A
Sbjct: 1285 KMLSEMVLCGIRGIKKVFMRHDDQVRVNENGA 1316
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 243 bits (620), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 185/282 (65%), Gaps = 13/282 (4%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+GI I KV++ T
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIK--NTKI 1327
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
+K E+ FK +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1328 QK---FDENEGFKPHEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRR 1384
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
S+ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR +TG +MRCSFEETV
Sbjct: 1385 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNETGPMMRCSFEETV 1444
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAA +AE D +RGV+ENI++GQL +GTG LLL+ E K+ IE+ L + M G
Sbjct: 1445 DILLDAAVYAETDHLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYMEGLD 1504
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNAT-HQSRDKAFAP 1738
GM G + ++ H L +P+ N S D F+P
Sbjct: 1505 FGMTPGRSPISATPYHEGLMSPNYLLSPNLRLSPSNDAQFSP 1546
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 12/103 (11%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DL CIFNDDNAEKL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1247 IAEKINHEFDGDLTCIFNDDNAEKLILRIRIMNDEAPKGDIQDES-----AEDDVFLKKI 1301
Query: 62 EANMLSDMTLQFIRIMNS---DDSKMQ--DEEDAVDKMEDDMF 99
E+NML++MTL+ I +N ++K+Q DE + E+ M
Sbjct: 1302 ESNMLTEMTLRGIPDINKVFIKNTKIQKFDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 116 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 169
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 170 -DEEDAVDKMEDDMF 183
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 200 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 253
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 254 -DEEDAVDKMEDDMF 267
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 284 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 337
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 338 -DEEDAVDKMEDDMF 351
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 368 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 421
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 422 -DEEDAVDKMEDDMF 435
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 452 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 505
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 506 -DEEDAVDKMEDDMF 519
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 536 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 589
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 590 -DEEDAVDKMEDDMF 603
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 620 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 673
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 674 -DEEDAVDKMEDDMF 687
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 704 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 757
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 758 -DEEDAVDKMEDDMF 771
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 788 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 841
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 842 -DEEDAVDKMEDDMF 855
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 872 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 925
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 926 -DEEDAVDKMEDDMF 939
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 956 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 1009
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 1010 -DEEDAVDKMEDDMF 1023
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 1040 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 1093
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 1094 -DEEDAVDKMEDDMF 1107
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 1124 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 1177
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 1178 -DEEDAVDKMEDDMF 1191
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 1208 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 1261
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 1262 -DEEDAVDKMEDDMF 1275
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
Score = 40.8 bits (94), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 1292 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS---DDSKMQ- 1345
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+ I +N ++K+Q
Sbjct: 1275 IRIMNDEAPKGDIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQK 1329
Query: 1346 -DEEDAVDKMEDDMF 1359
DE + E+ M
Sbjct: 1330 FDENEGFKPHEEWML 1344
>gi|50346868|gb|AAT75142.1| RNA polymerase 2 [Caenorhabditis brenneri]
Length = 596
Score = 243 bits (619), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 111/155 (71%), Positives = 131/155 (84%), Gaps = 5/155 (3%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ PQTD KKRIIIT
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPQTDDKKRIIIT 506
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKA+ADW+LETDGT+L++VLSE+ +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 507 PEGGFKAVADWILETDGTALLRVLSEQQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMD 566
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 1619
V+ F G YVNYRHLALLCDVMTAKGHL HG
Sbjct: 567 NVISFDGSYVNYRHLALLCDVMTAKGHL-----HG 596
Score = 97.8 bits (242), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 412 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIA-GEDKGAEGQEEQVDKMEDDVFLRC 470
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD+TLQ I
Sbjct: 471 IEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 447 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 484
>gi|356605952|gb|AET25007.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 10
KK-2011]
Length = 599
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/148 (73%), Positives = 128/148 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 511
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 512 PEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMD 571
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
V+ F G YVNYRHLALLCDVMTAKGHL
Sbjct: 572 NVISFDGSYVNYRHLALLCDVMTAKGHL 599
Score = 96.3 bits (238), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 66/91 (72%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNA+KLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 417 MEMIADRIHGGFGNDVHTIYTDDNADKLVFRLRIA-GEDKGAEGQEEQVDKMEDDVFLRC 475
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 476 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 452 GEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 506
>gi|157841414|gb|ABV83165.1| RNA polymerase 2 [Choriorhabditis dudichi]
Length = 380
Score = 242 bits (617), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/156 (71%), Positives = 132/156 (84%), Gaps = 2/156 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQGI +I KVYMH P +D KK
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGINSIAKVYMHKPTSDDKK 284
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
++IIT G FKAI +WLLETDGT+L+KVLSE+ +DPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 285 KVIITPEGGFKAIPEWLLETDGTALLKVLSEQYIDPVRTSSNDICEIFEVLGIEAVRKAI 344
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
E+EMN V+ F G YVNYRHLALLCDVMT KGHLMAI
Sbjct: 345 EREMNNVISFDGSYVNYRHLALLCDVMTCKGHLMAI 380
Score = 100 bits (250), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GFGDDLN I+ DDNAEKLV R+RI N D K EE+ +DKMEDD+FLRC
Sbjct: 196 MEHIADKIHQGFGDDLNVIYADDNAEKLVFRLRISNQADDKA--EEEQIDKMEDDVFLRC 253
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 254 IESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K EE+ +DKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 227 LRISNQADDKA--EEEQIDKMEDDVFLRCIESNMLSDLTLQGI 267
>gi|356605930|gb|AET24996.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 18
KK-2011]
Length = 598
Score = 242 bits (617), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 129/151 (85%)
Query: 1463 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII 1522
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRII
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRII 507
Query: 1523 ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKE 1582
IT G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+E
Sbjct: 508 ITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIERE 567
Query: 1583 MNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
M+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 568 MHNVISFDGSYVNYRHLALLCDVMTAKGHLM 598
Score = 96.7 bits (239), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI D+ +E+ VDKMEDD+FLRC
Sbjct: 415 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRI-TGDEKGADTQEEQVDKMEDDVFLRC 473
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 474 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 119 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 161 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 203 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 245 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 287 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 329 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 371 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 413 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 455 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 497 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 539 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 581 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 623 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 665 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 707 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 749 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 791 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 833 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 875 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 917 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 959 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1001 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1043 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1085 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1127 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1169 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1211 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1253 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1295 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1337 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 1379 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+ D+ +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 448 ITGDEKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 504
>gi|157841422|gb|ABV83170.1| RNA polymerase 2 [Caenorhabditis sp. JU727]
Length = 620
Score = 241 bits (616), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/151 (73%), Positives = 128/151 (84%)
Query: 1463 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII 1522
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQGI I KVYM P TD KKRII
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPQISKVYMSQPNTDDKKRII 529
Query: 1523 ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKE 1582
IT G FKA+ADW+LETDGT+L++VLSER +DP+RT SNDICEIF+VLGIEAVRKS+EKE
Sbjct: 530 ITPEGGFKAVADWILETDGTALLRVLSERQIDPIRTTSNDICEIFEVLGIEAVRKSIEKE 589
Query: 1583 MNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
M+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 590 MDNVISFDGSYVNYRHLALLCDVMTAKGHLM 620
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG D++ I+ DDNAEKLV R+RI + DD +E+ VDKMEDD+FLRC
Sbjct: 437 MEMIADRIHGGFGTDVHTIYTDDNAEKLVFRLRI-SGDDKGDGGQEEQVDKMEDDVFLRC 495
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD+TLQ I
Sbjct: 496 IEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 119 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 161 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 203 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 245 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 287 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 329 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 371 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 413 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 455 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 497 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 539 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 581 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 623 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 665 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 707 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 749 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 791 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 833 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 875 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 917 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 959 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1001 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1043 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1085 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1127 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1169 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1211 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1253 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1295 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1337 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1379 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 470 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 509
>gi|356605950|gb|AET25006.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 5
KK-2011]
Length = 614
Score = 241 bits (616), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/151 (73%), Positives = 128/151 (84%)
Query: 1463 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII 1522
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQGI I KVYM P TD KKRII
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPQISKVYMSQPNTDDKKRII 523
Query: 1523 ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKE 1582
IT G FKA+ADW+LETDGT+L++VLSER +DP+RT SNDICEIF+VLGIEAVRKS+EKE
Sbjct: 524 ITPEGGFKAVADWILETDGTALLRVLSERQIDPIRTTSNDICEIFEVLGIEAVRKSIEKE 583
Query: 1583 MNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
M+ V+ F G YVNYRHLALLCDVMTAKGHLM
Sbjct: 584 MDNVISFDGSYVNYRHLALLCDVMTAKGHLM 614
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG D++ I+ DDNAEKLV R+RI + DD +E+ VDKMEDD+FLRC
Sbjct: 431 MEMIADRIHGGFGTDVHTIYTDDNAEKLVFRLRI-SGDDKGDGGQEEQVDKMEDDVFLRC 489
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD+TLQ I
Sbjct: 490 IEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 119 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 161 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 203 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 245 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 287 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 329 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 371 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 413 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 455 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 497 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 539 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 581 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 623 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 665 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 707 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 749 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 791 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 833 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 875 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 917 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 959 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1001 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1043 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1085 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1127 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1169 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1211 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1253 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1295 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1337 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 1379 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
++ DD +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 464 ISGDDKGDGGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 503
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 241 bits (615), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/294 (47%), Positives = 188/294 (63%), Gaps = 37/294 (12%)
Query: 1460 IRIMN--SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+RI N + ++QDE EDD+FL+ IE+NML++M L+GI I KV++ + +
Sbjct: 1258 VRITNDEAQKGEIQDEYG-----EDDVFLKKIESNMLTEMALRGIPGINKVFIK--EGNV 1310
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K ++ FK W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1311 NK---FEDNDGFKTEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 1367
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1368 ALLDELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1427
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAA +AE+DP+RGVSENI++GQL +GTG DL L+ + K IE+ L + +
Sbjct: 1428 DILLDAAVYAESDPLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYV---- 1483
Query: 1698 AGMFFG---SAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSR 1748
G+ FG SA +P S TP+ HQ +PS L LSPD R
Sbjct: 1484 EGLDFGMMTSACSPIS------GTPY--------HQG---MMSPSYL-LSPDIR 1519
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 11/122 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN--SDDSKMQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL+CIFNDDNA+KL+LR+RI N + ++QDE EDD+FL+ I
Sbjct: 1230 IAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKGEIQDEYG-----EDDVFLKKI 1284
Query: 62 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 121
E+NML++M L+ I +N K+ +E V+K ED+ + + ML + + +M
Sbjct: 1285 ESNMLTEMALRGIPGIN----KVFIKEGNVNKFEDNDGFKTEKGWMLDTEGVNLLAVMCH 1340
Query: 122 DD 123
+D
Sbjct: 1341 ED 1342
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 241 bits (614), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/270 (47%), Positives = 181/270 (67%), Gaps = 18/270 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+GI I KV++ + D K
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFI---KEDKKN 1297
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R E+ F+ +W+L+T+G +++ V+ DVD RT SN + E+ +VLGIEAVR ++
Sbjct: 1298 RF--DENVAFEPEKEWILDTEGVNMLAVMCHEDVDASRTLSNHLIEVIEVLGIEAVRNAL 1355
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1356 LKELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1415
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
L+DAA +AEAD ++GV+ENI++GQL +GTG F L L+ + IE+ L + G
Sbjct: 1416 LLDAAVYAEADHLKGVTENIMLGQLAPIGTGDFGLHLNENMLQHAIELQLPSF-----EG 1470
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATH 1729
+G + S MI TPHN + + ++
Sbjct: 1471 TDYGMTPSRSPMI----GTPHNEGMMSPSY 1496
Score = 85.1 bits (209), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 8/112 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
I+EKIN F DDL CIFNDDNAEKL+LRIRIMN + K +A ++ EDD+FL+ IE+
Sbjct: 1217 IAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPK----GEATEQSEDDVFLKKIES 1272
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 111
NML++M L+ I ++ +D K + +E+ + E + L NML+ M
Sbjct: 1273 NMLTEMALRGIPDIRKVFIKEDKKNRFDENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 171
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 172 EDAVDKMEDDMFLRCIEANMLSDM 195
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 213
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 214 EDAVDKMEDDMFLRCIEANMLSDM 237
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 255
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 256 EDAVDKMEDDMFLRCIEANMLSDM 279
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 297
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 298 EDAVDKMEDDMFLRCIEANMLSDM 321
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 339
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 340 EDAVDKMEDDMFLRCIEANMLSDM 363
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 381
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 382 EDAVDKMEDDMFLRCIEANMLSDM 405
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 423
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 424 EDAVDKMEDDMFLRCIEANMLSDM 447
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 465
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 466 EDAVDKMEDDMFLRCIEANMLSDM 489
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 507
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 508 EDAVDKMEDDMFLRCIEANMLSDM 531
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 549
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 550 EDAVDKMEDDMFLRCIEANMLSDM 573
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 591
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 592 EDAVDKMEDDMFLRCIEANMLSDM 615
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 633
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 634 EDAVDKMEDDMFLRCIEANMLSDM 657
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 675
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 676 EDAVDKMEDDMFLRCIEANMLSDM 699
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 717
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 718 EDAVDKMEDDMFLRCIEANMLSDM 741
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 759
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 760 EDAVDKMEDDMFLRCIEANMLSDM 783
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 801
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 802 EDAVDKMEDDMFLRCIEANMLSDM 825
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 843
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 844 EDAVDKMEDDMFLRCIEANMLSDM 867
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 885
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 886 EDAVDKMEDDMFLRCIEANMLSDM 909
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 927
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 928 EDAVDKMEDDMFLRCIEANMLSDM 951
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 969
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 970 EDAVDKMEDDMFLRCIEANMLSDM 993
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1011
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1012 EDAVDKMEDDMFLRCIEANMLSDM 1035
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1053
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1054 EDAVDKMEDDMFLRCIEANMLSDM 1077
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1095
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1096 EDAVDKMEDDMFLRCIEANMLSDM 1119
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1137
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1138 EDAVDKMEDDMFLRCIEANMLSDM 1161
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1179
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1180 EDAVDKMEDDMFLRCIEANMLSDM 1203
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1221
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1222 EDAVDKMEDDMFLRCIEANMLSDM 1245
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1263
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1264 EDAVDKMEDDMFLRCIEANMLSDM 1287
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1305
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1306 EDAVDKMEDDMFLRCIEANMLSDM 1329
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1347
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1348 EDAVDKMEDDMFLRCIEANMLSDM 1371
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
Score = 41.6 bits (96), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI----RIMNSDDSKMQDE 1389
IRIMN + K +A ++ EDD+FL+ IE+NML++M L+ I ++ +D K + +
Sbjct: 1245 IRIMNDEAPK----GEATEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFD 1300
Query: 1390 EDAVDKMEDDMFLRCIEANMLSDM 1413
E+ + E + L NML+ M
Sbjct: 1301 ENVAFEPEKEWILDTEGVNMLAVM 1324
>gi|38232239|gb|AAR14955.1| RNA polymerase II largest subunit [Semibalanus balanoides]
Length = 137
Score = 241 bits (614), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/133 (83%), Positives = 125/133 (93%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQGIE+I KVYMHLP T++KK
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGIESISKVYMHLPSTENKK 64
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFK IA+WLLETDGTSLMKVLSERDVDP+RTFSNDICEIF VLGIEAVRK +
Sbjct: 65 RIVITETGEFKHIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFSVLGIEAVRKCI 124
Query: 1580 EKEMNTVLQFYGL 1592
EKE+NTVLQFYGL
Sbjct: 125 EKEINTVLQFYGL 137
Score = 76.6 bits (187), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/47 (80%), Positives = 43/47 (91%)
Query: 28 LVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 74
LVLRIRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 1 LVLRIRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 74 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 116
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSDDSK DE++ +D+MEDDMFLRCIE+NMLSDMTLQ I
Sbjct: 5 IRIMNSDDSKFSDEDEQMDRMEDDMFLRCIESNMLSDMTLQGI 47
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 241 bits (614), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/294 (47%), Positives = 188/294 (63%), Gaps = 37/294 (12%)
Query: 1460 IRIMN--SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+RI N + ++QDE EDD+FL+ IE+NML++M L+GI I KV++ + +
Sbjct: 1205 VRITNDEAQKGEIQDEYG-----EDDVFLKKIESNMLTEMALRGIPGINKVFIK--EGNV 1257
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K ++ FK W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1258 NK---FEDNDGFKTEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 1314
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1315 ALLDELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1374
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAA +AE+DP+RGVSENI++GQL +GTG DL L+ + K IE+ L + +
Sbjct: 1375 DILLDAAVYAESDPLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYV---- 1430
Query: 1698 AGMFFG---SAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSR 1748
G+ FG SA +P S TP+ HQ +PS L LSPD R
Sbjct: 1431 EGLDFGMMTSACSPIS------GTPY--------HQG---MMSPSYL-LSPDIR 1466
Score = 82.0 bits (201), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 11/122 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN--SDDSKMQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL+CIFNDDNA+KL+LR+RI N + ++QDE EDD+FL+ I
Sbjct: 1177 IAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKGEIQDEYG-----EDDVFLKKI 1231
Query: 62 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 121
E+NML++M L+ I +N K+ +E V+K ED+ + + ML + + +M
Sbjct: 1232 ESNMLTEMALRGIPGIN----KVFIKEGNVNKFEDNDGFKTEKGWMLDTEGVNLLAVMCH 1287
Query: 122 DD 123
+D
Sbjct: 1288 ED 1289
>gi|316997019|dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
Length = 1289
Score = 239 bits (611), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 155/210 (73%), Gaps = 6/210 (2%)
Query: 1472 DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP----QTDSKKRIIITESG 1527
EE AV+ +D LR +EA ++ D+ L G++AI KVYM+ P Q D K+R+ +++ G
Sbjct: 782 GEEVAVEVSDDLSTLRALEAFIM-DIPLAGLKAITKVYMNFPDDKVQRD-KQRMTVSDDG 839
Query: 1528 EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVL 1587
+K +WLLETDG++L+ V+ R VD RT +ND+ E F VLGIEA R+ VE E+ VL
Sbjct: 840 SYKFTPEWLLETDGSALLDVMCNRHVDAYRTMTNDVVECFSVLGIEAGRQCVENEIKNVL 899
Query: 1588 QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHA 1647
G YVNYRHL+LLC++MT+KG+LMAITRHG+NRQ GALMRCSFEETVD+LM+A+AHA
Sbjct: 900 DNSGAYVNYRHLSLLCNIMTSKGYLMAITRHGVNRQKVGALMRCSFEETVDILMEASAHA 959
Query: 1648 EADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
E D +RGVSENI++G L GTG FDL L+
Sbjct: 960 ECDHLRGVSENIMLGNLVPAGTGFFDLFLN 989
>gi|157841476|gb|ABV83204.1| RNA polymerase 2 [Oscheius dolichura]
Length = 371
Score = 239 bits (611), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 129/151 (85%), Gaps = 2/151 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQGI +I KVYMH P TD KK
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+++T G+FK IADW+LETDGT+L+KVLSE ++DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 281 RVVVTPEGDFKHIADWILETDGTALLKVLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSI 340
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
E+EM+ V+ F G YVNYRHLALLCDVMTAKG
Sbjct: 341 EREMDNVISFDGSYVNYRHLALLCDVMTAKG 371
Score = 104 bits (260), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 10/91 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI++GFGDDLN I+ DDNA+KLV RIRI N D K EE+ +DKMEDDMFLRC
Sbjct: 192 MEQIADKIHSGFGDDLNVIYTDDNADKLVFRIRITNQGDDK--GEEEQIDKMEDDMFLRC 249
Query: 61 IEANMLSDMTLQ--------FIRIMNSDDSK 83
IE+NMLSD+TLQ ++ N+DD K
Sbjct: 250 IESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 167
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 209
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 251
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 293
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 335
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 377
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 419
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 461
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 503
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 545
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 587
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 629
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 671
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 713
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 755
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 797
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 839
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 881
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 923
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 965
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1007
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1049
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1091
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1133
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1175
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1217
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1259
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1301
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1343
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1385
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1427
IRI N D K EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 223 IRITNQGDDK--GEEEQIDKMEDDMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKK 280
>gi|161897744|gb|ABX80015.1| RNA polymerase 2 largest subunit [Diploscapter sp. JU359]
Length = 374
Score = 239 bits (609), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/158 (69%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQGI +I KVYMH P TD KK
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGISSIAKVYMHKPTTDDKK 276
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+III+ G FKAI +WLLETDGT+L++VLSER +DP RT SNDICEIF+VLGIEAVRK++
Sbjct: 277 KIIISPEGGFKAIPEWLLETDGTALLRVLSERHIDPKRTSSNDICEIFEVLGIEAVRKAI 336
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1617
++EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITR
Sbjct: 337 QREMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAITR 374
Score = 90.5 bits (223), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI+ GF DDLN I+ DDNAEKLV R+RI D+ EE+ +DKMEDD FLR
Sbjct: 188 MEQIADKIHEGFRDDLNVIYTDDNAEKLVFRLRITTQDEK--NTEEEQIDKMEDDTFLRA 245
Query: 61 IEANMLSDMTLQFI 74
IEA+MLSD+TLQ I
Sbjct: 246 IEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI D+ EE+ +DKMEDD FLR IEA+MLSD+TLQ I
Sbjct: 219 LRITTQDEK--NTEEEQIDKMEDDTFLRAIEASMLSDLTLQGI 259
>gi|18732|emb|CAA36733.1| DNA-directed RNA polymerase [Glycine max]
Length = 625
Score = 239 bits (609), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 175/262 (66%), Gaps = 12/262 (4%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+GI I KV++ ++
Sbjct: 84 IRIMNDEAPKGEIQDE-----SAEDDVFLKKIESNMLTEMTLRGIPDINKVFIK----NT 134
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K + G FK +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 135 KVQKFDVNQG-FKPNEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRR 193
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 194 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 253
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAA +AE D +RGV+ENI++GQL +GTG L L+ E K+ IE+ L + M G
Sbjct: 254 DILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLD 313
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
GM + + H L +P
Sbjct: 314 FGMTPARSPISGTPYHEGLMSP 335
Score = 82.8 bits (203), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNAEKL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 56 IAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDE-----SAEDDVFLKKI 110
Query: 62 EANMLSDMTLQFIRIMN 78
E+NML++MTL+ I +N
Sbjct: 111 ESNMLTEMTLRGIPDIN 127
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 238 bits (608), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/262 (49%), Positives = 175/262 (66%), Gaps = 12/262 (4%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+GI I KV++ T
Sbjct: 1257 IRIMNDEAPKGEIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIK--NTKV 1309
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
+K E+ FK +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1310 QK---FDENQGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 1366
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1367 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1426
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAA +AE D +RGV+ENI++GQL +GTG L L+ E K+ IE+ L + M G
Sbjct: 1427 DILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLD 1486
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
GM + + H L +P
Sbjct: 1487 FGMTPARSPISGTPYHEGLMSP 1508
Score = 83.6 bits (205), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 11/122 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNAEKL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1229 IAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDES-----AEDDVFLKKI 1283
Query: 62 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 121
E+NML++MTL+ I D +K+ + V K +++ + E ML + + +M
Sbjct: 1284 ESNMLTEMTLRGI----PDINKVFIKNTKVQKFDENQGFKPNEEWMLDTEGVNLLAVMCH 1339
Query: 122 DD 123
+D
Sbjct: 1340 ED 1341
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 238 bits (608), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/292 (45%), Positives = 184/292 (63%), Gaps = 16/292 (5%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRI N + K +QDE EDD+FL+ IE NML++M L+GI I KV++ +
Sbjct: 1256 IRITNDEAPKGEIQDES-----AEDDVFLKKIEGNMLTEMALRGIPDINKVFI----KEG 1306
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K + G FKA +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1307 KVNTFYQDEG-FKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 1365
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
S+ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1366 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1425
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAA +AE+D +RGV+ENI++GQL +GTG L L+ + + IE+ L + + G
Sbjct: 1426 DILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLD 1485
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTN--ATHQSRDKAFAP--SELFLSP 1745
GM + + H + +P N A+ + D +F+P + SP
Sbjct: 1486 FGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSP 1537
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 11/122 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I++KIN F DDL+CIFNDDNA+KL+LRIRI N + K +QDE EDD+FL+ I
Sbjct: 1228 IADKINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDES-----AEDDVFLKKI 1282
Query: 62 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 121
E NML++M L+ I D +K+ +E V+ D + ML + + +M
Sbjct: 1283 EGNMLTEMALRGI----PDINKVFIKEGKVNTFYQDEGFKAANEWMLDTEGVNLLAVMCH 1338
Query: 122 DD 123
+D
Sbjct: 1339 ED 1340
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 238 bits (607), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/299 (47%), Positives = 199/299 (66%), Gaps = 31/299 (10%)
Query: 1460 IRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRIMN + K + ++E A EDD+FL+ IE+NML++M L+GI I KV++ Q+
Sbjct: 1257 IRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGIPDINKVFIK--QSKVS 1310
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
K E+ FK I +W+L+T+G +L+ V+ +VD RT SN + E+ +VLGIEAVR+S
Sbjct: 1311 K---FDENEGFKTIEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRS 1367
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD
Sbjct: 1368 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVD 1427
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA 1698
+L+DAA +AEAD +RGV+ENI++GQL +GTG L L+ + K+ IE+ L + M
Sbjct: 1428 ILLDAAVYAEADYLRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYM----D 1483
Query: 1699 GMFFG--SAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSP--DSRY-PYI 1752
G+ FG A +P S+ TP++ + + ++ +PS L LSP D+++ PY+
Sbjct: 1484 GLDFGMTPARSPVSV------TPYHDGMMSPSY-----LLSPS-LRLSPTTDAQFSPYV 1530
Score = 83.6 bits (205), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQ-DEEDAVDKMEDDMFLRCIE 62
I+EKIN F DDL CIFNDDNAEKL+LRIRIMN + K + ++E A EDD+FL+ IE
Sbjct: 1229 IAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESA----EDDVFLKKIE 1284
Query: 63 ANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM 119
+NML++M L+ I D +K+ ++ V K +++ + IE ML + + +M
Sbjct: 1285 SNMLTEMALRGI----PDINKVFIKQSKVSKFDENEGFKTIEEWMLDTEGVNLLAVM 1337
>gi|157841380|gb|ABV83144.1| RNA polymerase 2 [Teratorhabditis palmarum]
Length = 633
Score = 238 bits (607), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 132/157 (84%), Gaps = 3/157 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQGIE I KVYMH P TD KK
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGIEQISKVYMHKPTTDDKK 524
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R +IT G+F++IA+WLLETDGTSL+ VLS+ +VDPVRT+SNDICEIF+VLGIEAVRK++
Sbjct: 525 RTVITPEGDFRSIAEWLLETDGTSLLDVLSQPNVDPVRTYSNDICEIFEVLGIEAVRKAI 584
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1616
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAIT
Sbjct: 585 EREMHQVISFDGSYVNYRHLALLCDVMTAKGHLMAIT 621
Score = 88.2 bits (217), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+ +I GFGDDL+ I+ DDNA+ LV RIRI + + D E+ ++KMEDDMFLR
Sbjct: 437 MEAIASRITQGFGDDLHTIYTDDNADSLVFRIRIRSENKG---DTEETIEKMEDDMFLRA 493
Query: 61 IEANMLSDMTLQFI 74
+E NML+++TLQ I
Sbjct: 494 VEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRI + + D E+ ++KMEDDMFLR +E NML+++TLQ I
Sbjct: 468 IRIRSENKG---DTEETIEKMEDDMFLRAVEQNMLAELTLQGI 507
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 238 bits (607), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 160/223 (71%), Gaps = 10/223 (4%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
RI+ D + +D D + +D+FL+ IE NMLS+++L+GIE I +V++ +K+
Sbjct: 1252 RIVGDDPTTKED-----DGVSEDVFLKKIENNMLSNISLRGIEGITRVFI-----VERKK 1301
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
+I E G F+ +W+LETDG +L +VL + VD RT+SN EIF+VLGIEA R ++
Sbjct: 1302 EVIAEGGRFERQQEWVLETDGVNLSEVLPVKHVDGTRTYSNHCQEIFEVLGIEAARNAIL 1361
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1640
KE+ V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEETV++L
Sbjct: 1362 KELRNVIEFDGSYVNYRHLALLCDLMTNRGRLMAITRHGINRADTGALMRCSFEETVEIL 1421
Query: 1641 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
++AAA E D G++EN+++GQ+ MGTG FD+ LD + KD
Sbjct: 1422 LEAAAIGEKDDCHGIAENVLLGQMAPMGTGAFDVTLDIDMLKD 1464
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ KI + F +DL I+++D+AEKL++R RI+ D + +D D + +D+FL+
Sbjct: 1220 MNFVAGKIASLFQNDLFVIYSEDSAEKLIIRARIVGDDPTTKED-----DGVSEDVFLKK 1274
Query: 61 IEANMLSDMTLQFI 74
IE NMLS+++L+ I
Sbjct: 1275 IENNMLSNISLRGI 1288
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 238 bits (607), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 183/286 (63%), Gaps = 21/286 (7%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++MTL+GI I KV++ T
Sbjct: 1257 IRIMNDEAPKGEIQDES-----AEDDVFLKKIESNMLTEMTLRGIPDINKVFIK--NTKV 1309
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
+K E+ FK +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1310 QK---FDENQGFKPNEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRR 1366
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1367 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1426
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAA +AE D +RGV+ENI++GQL +GTG L L+ E K+ IE+ L + M G
Sbjct: 1427 DILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLD 1486
Query: 1698 AGMFFGSAATPSSMIHNPLQTP-----HNTSLTNATHQSRDKAFAP 1738
GM + + H L +P N L+ T D F+P
Sbjct: 1487 FGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTT----DAQFSP 1528
Score = 83.2 bits (204), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 11/122 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNAEKL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1229 IAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDES-----AEDDVFLKKI 1283
Query: 62 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 121
E+NML++MTL+ I D +K+ + V K +++ + E ML + + +M
Sbjct: 1284 ESNMLTEMTLRGI----PDINKVFIKNTKVQKFDENQGFKPNEEWMLDTEGVNLLAVMCH 1339
Query: 122 DD 123
+D
Sbjct: 1340 ED 1341
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 238 bits (606), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/292 (45%), Positives = 184/292 (63%), Gaps = 16/292 (5%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRI N + K +QDE EDD+FL+ IE NML++M L+GI I KV++ +
Sbjct: 1256 IRITNDEAPKGEIQDES-----AEDDVFLKKIEGNMLTEMALRGIPDINKVFI----KEG 1306
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K + G FKA +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1307 KVNTFYQDDG-FKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 1365
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
S+ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1366 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1425
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAA +AE+D +RGV+ENI++GQL +GTG L L+ + + IE+ L + + G
Sbjct: 1426 DILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLD 1485
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTN--ATHQSRDKAFAP--SELFLSP 1745
GM + + H + +P N A+ + D +F+P + SP
Sbjct: 1486 FGMTPARSPITGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSP 1537
Score = 77.0 bits (188), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 12/99 (12%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL+CIFNDDNA+KL+LRIRI N + K +QDE EDD+FL+ I
Sbjct: 1228 IAEKINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDES-----AEDDVFLKKI 1282
Query: 62 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDK-MEDDMF 99
E NML++M L+ I D +K+ +E V+ +DD F
Sbjct: 1283 EGNMLTEMALRGI----PDINKVFIKEGKVNTFYQDDGF 1317
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 237 bits (605), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/234 (52%), Positives = 161/234 (68%), Gaps = 13/234 (5%)
Query: 1480 MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLET 1539
+E+D+FL+ IE +ML ++L+G+ I +VYM K + + G F +W+LET
Sbjct: 1260 IEEDIFLKTIEGHMLESISLRGVPNITRVYMM-----EHKIVHQNDDGVFVRDDEWVLET 1314
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
DG +L + ++ VDP RT+SN E+ QVLGIEA R ++ KE+ V++F G YVNYRHL
Sbjct: 1315 DGINLAESMAVEGVDPSRTYSNSFVEVLQVLGIEATRSALLKELRNVIEFDGSYVNYRHL 1374
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALLCDVMT++GHLMAITRHGINR +TGALMRCSFEETV++LMDAAA E D RGVSENI
Sbjct: 1375 ALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDGCRGVSENI 1434
Query: 1660 IMGQLPRMGTGCFDLLLD-----AEKCKDGIEIPLATGMMGGPAGMFFGSAATP 1708
++GQL MGTG FD+ LD +E G+ + TGM G A + GS ATP
Sbjct: 1435 MLGQLAPMGTGSFDVFLDQDLLLSEVPSAGMPTLVGTGM--GKAILPEGS-ATP 1485
Score = 47.0 bits (110), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 6/98 (6%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ KI F DL I+++DNAEKL++R RI+ DD K +++ + E+D+FL+ IE
Sbjct: 1215 VAGKIAESFERDLFTIWSEDNAEKLIIRCRIIRDDDKKADEDDGLI---EEDIFLKTIEG 1271
Query: 64 NMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 101
+ML ++L+ + N M E V + +D +F+R
Sbjct: 1272 HMLESISLR--GVPNITRVYMM-EHKIVHQNDDGVFVR 1306
>gi|50346887|gb|AAT75150.1| RNA polymerase 2 [Caenorhabditis sp. DF5070]
Length = 606
Score = 237 bits (605), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 133/155 (85%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQGI +I KVYM+ P TD KKR
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKKR 509
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
+IT+ G FK+I +W+LETDGT+L++VL+E+ +DPVRT SNDICEIF+VLGIEAVRK++E
Sbjct: 510 TVITDEGGFKSITEWILETDGTALLRVLAEQQIDPVRTTSNDICEIFEVLGIEAVRKAIE 569
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAI
Sbjct: 570 REMHNVISFDGSYVNYRHLALLCDVMTAKGHLMAI 604
Score = 97.4 bits (241), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 68/91 (74%), Gaps = 10/91 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I++GFG+D++ I+ DDNAEKLV R+RI + D K + +E+ VDKMEDD+FLRC
Sbjct: 420 MEMIADRIHSGFGNDVHTIYTDDNAEKLVFRLRI--AGDDKGEGQEEQVDKMEDDVFLRC 477
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANML+D+TLQ I + N+DD K
Sbjct: 478 IEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 117 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 159 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 201 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 243 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 285 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 327 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 369 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 411 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 453 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 495 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 537 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 579 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 621 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 663 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 705 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 747 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 789 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 831 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 873 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 915 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 957 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 999 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1041 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1083 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1125 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1167 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1209 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1251 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1293 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1335 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 8/59 (13%)
Query: 1377 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
R+ + D K + +E+ VDKMEDD+FLRCIEANML+D+TLQ I + N+DD K
Sbjct: 450 RLRIAGDDKGEGQEEQVDKMEDDVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKK 508
>gi|50346883|gb|AAT75148.1| RNA polymerase 2 [Caenorhabditis sp. SB341]
Length = 622
Score = 237 bits (604), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/150 (72%), Positives = 126/150 (84%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
DD +E+ VDKMEDD FLRCIEANMLSD++LQGI AI K YM+ P TD KKRIIIT
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGIPAILKGYMYKPTTDDKKRIIIT 531
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
G FKAI +W+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 532 PEGGFKAIPEWILETDGTALLRVLSERHIDPVRTSSNDICEIFEVLGIEAVRKAIEREMH 591
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1614
V+ F G YVNYRHLALLCDVMTAKGHLMA
Sbjct: 592 NVISFDGSYVNYRHLALLCDVMTAKGHLMA 621
Score = 95.1 bits (235), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I++KI++GFG+DL+ I+NDDNA+ LV R+RI DD +E+ VDKMEDD FLRC
Sbjct: 437 MEHIADKIHSGFGNDLHVIYNDDNADHLVFRLRIAG-DDKSSDAQEEQVDKMEDDXFLRC 495
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD++LQ I
Sbjct: 496 IEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
DD +E+ VDKMEDD FLRCIEANMLSD++LQ I
Sbjct: 472 GDDKSSDAQEEQVDKMEDDXFLRCIEANMLSDLSLQGI 509
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 235 bits (599), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/291 (46%), Positives = 183/291 (62%), Gaps = 32/291 (10%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++M L+GI I KV++ S
Sbjct: 1257 IRIMNDEAPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFI-----KS 1306
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K ES FK +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1307 GKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR 1366
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
S+ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1426
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAA +AE D +RGV+ENI++GQL +GTG L L+ + + IE+ L + M
Sbjct: 1427 DILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYM---- 1482
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSR 1748
G+ FG TP + +T + D +P+ L LSP+ R
Sbjct: 1483 EGLDFG-------------MTPSRSPITGTPYH--DGMMSPNYL-LSPNLR 1517
Score = 80.9 bits (198), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 56/77 (72%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNAEKL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1229 IAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDES-----AEDDVFLKKI 1283
Query: 62 EANMLSDMTLQFIRIMN 78
E+NML++M L+ I +N
Sbjct: 1284 ESNMLTEMALRGIPDIN 1300
>gi|50346863|gb|AAT75141.1| RNA polymerase 2 [Caenorhabditis angaria]
Length = 601
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/146 (72%), Positives = 126/146 (86%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKRIIIT
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIIT 514
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
E G FK+I +W+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++E+EM+
Sbjct: 515 EEGGFKSITEWILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMH 574
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKG 1610
V+ F G YVNYRHLALLCDVMTAKG
Sbjct: 575 NVISFDGSYVNYRHLALLCDVMTAKG 600
Score = 97.4 bits (241), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I++GFG D++ I+ DDNAEKLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 420 MEMIADRIHSGFGQDVHTIYTDDNAEKLVFRLRIAG-EDKAAEGQEEQVDKMEDDVFLRC 478
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 479 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 121 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 163 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 205 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 247 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 289 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 331 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 373 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 415 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 457 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 499 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 541 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 583 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 625 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 667 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 709 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 751 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 793 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 835 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 877 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 919 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 961 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1003 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1045 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1087 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1129 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1171 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1213 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1255 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1297 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1339 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 1381 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 455 GEDKAAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 509
>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
Length = 1449
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 162/236 (68%), Gaps = 16/236 (6%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+RI N + K +QDE EDD+FL+ IE+NML++M L+GI I KV++ + +
Sbjct: 1227 VRITNDEAPKGEIQDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNK 1281
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
++ FKA +W+L T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1282 -----FEDNVGFKADNEWMLVTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 1336
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1337 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1396
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1693
D+L+DAA +AE+D +RGVSENI++GQL +GTG FDL + K G L TG+
Sbjct: 1397 DILLDAAVYAESDYLRGVSENIMLGQLAPIGTGGFDLSCFERRVKFG----LVTGL 1448
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 11/122 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL+CIFNDDNA+KL+LR+RI N + K +QDE EDD+FL+ I
Sbjct: 1199 IAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDES-----AEDDVFLKKI 1253
Query: 62 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 121
E+NML++M L+ I D +K+ + V+K ED++ + ML + + +M
Sbjct: 1254 ESNMLTEMALRGI----PDINKVFIKYGKVNKFEDNVGFKADNEWMLVTEGVNLLAVMCH 1309
Query: 122 DD 123
+D
Sbjct: 1310 ED 1311
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 234 bits (598), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/232 (54%), Positives = 156/232 (67%), Gaps = 16/232 (6%)
Query: 1484 MFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+FLR IE ML ++L+G+E I +V+M H R I ++GEF +W+LETDG
Sbjct: 1280 VFLREIE-QMLGSISLRGVEGIQRVFMLQH-------NRNYICQNGEFDRKTEWVLETDG 1331
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L KVL VDPVRT SN+ EI VLGIEA R SV KE+ V++F G YVNYRHLAL
Sbjct: 1332 INLKKVLCVDGVDPVRTVSNNCVEIMTVLGIEAARASVLKELRNVIEFDGSYVNYRHLAL 1391
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCD+MT +G LMAITRHGINR DTG LMRCSFEETV++LMDAAA E D GV+EN+++
Sbjct: 1392 LCDLMTNRGSLMAITRHGINRADTGPLMRCSFEETVEILMDAAATGEKDHCTGVAENVLL 1451
Query: 1662 GQLPRMGTGCFDLLLDAEKCKDGI---EIPLATGMMGGPAGMFFGSAATPSS 1710
GQL MGTG FD+ LD E KD + +P+A +MG G F A TP
Sbjct: 1452 GQLAPMGTGAFDVALDLEMLKDVVIDHRLPVAGEIMG---GRFVDGAMTPGG 1500
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 234 bits (597), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 163/238 (68%), Gaps = 12/238 (5%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+RI N + K +QDE EDD+FL+ IE NML++M L+GI I KV++ + +
Sbjct: 1257 VRITNDEAPKGEIQDES-----AEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNK 1311
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
ES FK +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1312 -----FDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRR 1366
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
S+ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1367 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1426
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1695
D+L+DAA +AE+D +RGV+ENI++GQL +GTG L L+ + + IE+ L + + G
Sbjct: 1427 DILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEG 1484
Score = 77.0 bits (188), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL+CIFNDDNA+KL+LR+RI N + K +QDE EDD+FL+ I
Sbjct: 1229 IAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDES-----AEDDVFLKKI 1283
Query: 62 EANMLSDMTLQFIRIMN 78
E NML++M L+ I +N
Sbjct: 1284 EGNMLTEMALRGIPDIN 1300
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 234 bits (596), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/293 (46%), Positives = 185/293 (63%), Gaps = 38/293 (12%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN + K + E + EDD+FL+ IE+NML++M L+GI I KV++ + D K
Sbjct: 1260 IRIMNDEAPKGEMTEQS----EDDVFLKKIESNMLTEMALRGIPDIRKVFI---KEDKKN 1312
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R E+ F +W+L+T+G +++ V+ DVD RT SN + E+ +VLGIEAVR S+
Sbjct: 1313 RF--DENLAFVVEQEWVLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRNSL 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+ F G YVNYRHLA+LCDVMT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1371 LKELRDVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
L+DAA +AEAD ++GV+ENI++GQL +GTG F L L+ + + IE+ L +
Sbjct: 1431 LLDAAVYAEADHLKGVTENIMLGQLAPIGTGDFGLHLNEDMLQHAIELQLPS-------- 1482
Query: 1700 MF----FGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSR 1748
F +G + + MI TPHN D +PS L LSP R
Sbjct: 1483 -FEATDYGMTPSRTPMI----GTPHN-----------DGMMSPSYL-LSPSLR 1518
Score = 81.6 bits (200), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 8/112 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
I+EKIN F DDL CIFNDDNAEKL+LRIRIMN + K + E + EDD+FL+ IE+
Sbjct: 1232 IAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMTEQS----EDDVFLKKIES 1287
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 111
NML++M L+ I ++ +D K + +E+ +E + L NML+ M
Sbjct: 1288 NMLTEMALRGIPDIRKVFIKEDKKNRFDENLAFVVEQEWVLDTEGVNMLAVM 1339
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 234 bits (596), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 118/232 (50%), Positives = 164/232 (70%), Gaps = 8/232 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN + K + +++ EDD+FL+ IE+NML++M L+GI I KV++ + +
Sbjct: 1257 IRIMNDEAPKGELTDESA---EDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNK-- 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
E+ FK +W+L+T+G +L+ V++ DVD RT SN + E+ +VLGIEAVR+S+
Sbjct: 1312 ---FDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSL 1368
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1369 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1428
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
L+DAA +AE D +RGV+ENI++GQL +GTG L L+ E K+ IE+ L +
Sbjct: 1429 LLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPS 1480
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M I+EKIN F DDL CIFNDDNAEKL+LRIRIMN + K + +++ EDD+FL+
Sbjct: 1226 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESA---EDDVFLKK 1282
Query: 61 IEANMLSDMTLQFIRIMN 78
IE+NML++M L+ I +N
Sbjct: 1283 IESNMLTEMALRGIPDIN 1300
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 233 bits (595), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 118/232 (50%), Positives = 164/232 (70%), Gaps = 8/232 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN + K + +++ EDD+FL+ IE+NML++M L+GI I KV++ + +
Sbjct: 1257 IRIMNDEAPKGELTDESA---EDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNK-- 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
E+ FK +W+L+T+G +L+ V++ DVD RT SN + E+ +VLGIEAVR+S+
Sbjct: 1312 ---FDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSL 1368
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1369 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1428
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
L+DAA +AE D +RGV+ENI++GQL +GTG L L+ E K+ IE+ L +
Sbjct: 1429 LLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPS 1480
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M I+EKIN F DDL CIFNDDNAEKL+LRIRIMN + K + +++ EDD+FL+
Sbjct: 1226 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESA---EDDVFLKK 1282
Query: 61 IEANMLSDMTLQFIRIMN 78
IE+NML++M L+ I +N
Sbjct: 1283 IESNMLTEMALRGIPDIN 1300
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 233 bits (595), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 159/238 (66%), Gaps = 21/238 (8%)
Query: 1480 MEDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSKKRIIITESGEFKAIADWLL 1537
+E+D+FL+ IE +ML ++L+G+ I +VYM H K + E G F+ +W+L
Sbjct: 1260 IEEDVFLKTIEGHMLESISLRGVPNITRVYMMEH-------KIVRQIEDGTFERADEWVL 1312
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
ETDG +L + ++ VD RT+SN EI Q+LGIEA R ++ KE+ V++F G YVNYR
Sbjct: 1313 ETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYR 1372
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
HLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEETV++LMDAAA E D +G+SE
Sbjct: 1373 HLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISE 1432
Query: 1658 NIIMGQLPRMGTGCFDLLLDAE---KCKDGIEIP-LATGMMGG---PAGMFFGSAATP 1708
NI++GQL MGTG FD+ LD + G +P LA MG P G A TP
Sbjct: 1433 NIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEG-----AGTP 1485
Score = 46.2 bits (108), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ KI F DL I+++DNA+KL++R RI+ DD K +D+++ + E+D+FL+ IE
Sbjct: 1215 VAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMI---EEDVFLKTIEG 1271
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 116
+ML ++L+ + R+ + ++ ED + D+ L N+ MT++ +
Sbjct: 1272 HMLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGV 1328
>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1566
Score = 233 bits (595), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 177/308 (57%), Gaps = 17/308 (5%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++N + K E DD+FLR IEA MLS + LQGI I KV + K
Sbjct: 1179 IRVLNDEGGK----EAEAQSETDDVFLRKIEATMLSQVALQGIPDIHKVSLR-----ESK 1229
Query: 1520 RIIITESGE--FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
RI+ + + ++W+L+T+G +L +V+ DVD RT SN + EI +VLGIEA R
Sbjct: 1230 RIVPSSDAPDGYTNDSEWVLDTEGVNLSEVMCHPDVDYRRTISNHLVEIIEVLGIEAARN 1289
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ KEM V++F G YVNYRHLA L D MT++GH MAITRHGINRQ+ G L +CSFEETV
Sbjct: 1290 ALLKEMRGVIEFDGSYVNYRHLAALVDSMTSRGHFMAITRHGINRQENGPLAQCSFEETV 1349
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL-ATGMMGG 1696
D+L AAA +E D M GVSENI++GQL +GTG F L+LD K D IE+ A G G
Sbjct: 1350 DILFRAAAFSEKDHMTGVSENIMLGQLAPLGTGSFGLMLDESKLADAIELEFDALGRTPG 1409
Query: 1697 ---PAGMFFGSAATPSSMIHNPLQTP--HNTSLTNATHQSRDKAFAPSELFLSPDSRYPY 1751
P M A+P +P +P S T+ + ++P+ SP S Y
Sbjct: 1410 MMTPGRMTPSRIASPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPGVY 1469
Query: 1752 IRELITLC 1759
+ + C
Sbjct: 1470 AADNLIAC 1477
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 8/98 (8%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
I+E+IN+ F D+L CIFNDDNA KL+LRIR++N + K E DD+FLR IEA
Sbjct: 1151 IAERINSEFEDELTCIFNDDNAPKLILRIRVLNDEGGK----EAEAQSETDDVFLRKIEA 1206
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVDKMEDD 97
MLS + LQ I ++ + ++ DA D +D
Sbjct: 1207 TMLSQVALQGIPDIHKVSLRESKRIVPSSDAPDGYTND 1244
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 233 bits (594), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 168/256 (65%), Gaps = 15/256 (5%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
R M S ++ D+E V E+D+FLR I+ ML ++L+G+E I +V+M +
Sbjct: 1259 RAMQSSEADKDDDEGQV---EEDVFLREID-QMLGGISLRGVEGIQRVFMLQHNVN---- 1310
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
I SGEF+ +W+LETDG +L +VL VDP+RT SN+ EI VLG+EA R S+
Sbjct: 1311 -YINSSGEFERKTEWVLETDGINLKEVLCVDGVDPIRTVSNNCVEILTVLGVEAARASLL 1369
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1640
KE+ V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTG LMRCSFEETV++L
Sbjct: 1370 KELRNVIEFDGSYVNYRHLALLCDLMTNRGSLMAITRHGINRTDTGPLMRCSFEETVEIL 1429
Query: 1641 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI---EIPLATGMMGGP 1697
MDAAA E D GV+EN+++GQL MGTG FD+ LD E KD + +P+A ++GG
Sbjct: 1430 MDAAALGEKDHCTGVAENVLLGQLAPMGTGAFDVALDLEMLKDVVIDHRLPVAGEILGGR 1489
Query: 1698 ---AGMFFGSAATPSS 1710
M G TP +
Sbjct: 1490 YADGAMTPGGGMTPYA 1505
Score = 43.9 bits (102), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DNAEKL +R R M S ++ D+E V E+D+FLR
Sbjct: 1227 MNFVASRIAEVFKSDLFIIWSEDNAEKLTIRCRAMQSSEADKDDDEGQV---EEDVFLRE 1283
Query: 61 IEANMLSDMTLQFI 74
I+ ML ++L+ +
Sbjct: 1284 ID-QMLGGISLRGV 1296
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 232 bits (592), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 163/238 (68%), Gaps = 12/238 (5%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+RI N + K +QDE EDD+FL+ IE NML++M L+GI I KV++ + +
Sbjct: 1258 VRITNDEAPKGEIQDES-----AEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKINK 1312
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
E+ FK +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 1313 -----FDENDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 1367
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
S+ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1368 SLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1427
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1695
D+L+DAA +AE+D +RGV+ENI++GQL +GTG L L+ + + IE+ L + + G
Sbjct: 1428 DILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEG 1485
Score = 77.0 bits (188), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL+CIFNDDNA+KL+LR+RI N + K +QDE EDD+FL+ I
Sbjct: 1230 IAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDES-----AEDDVFLKKI 1284
Query: 62 EANMLSDMTLQFIRIMN 78
E NML++M L+ I +N
Sbjct: 1285 EGNMLTEMALRGIPDIN 1301
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 232 bits (591), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 174/251 (69%), Gaps = 14/251 (5%)
Query: 1444 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1503
L CI ++ +D + +RI+N + S+ + +D+ D++FL+ IE+NML++M+L+GI
Sbjct: 1241 LSCIFSDDNADKLILRLRIINDEASRGEILDDSAG---DEVFLKKIESNMLAEMSLRGIP 1297
Query: 1504 AIGKVYMHLPQTDSKKRIIITE---SGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1560
I KV++ K + + + S FK +W+L+TDG +L+ V+ DVD RT S
Sbjct: 1298 DINKVFI--------KEVKVNKFDVSDGFKEHKEWMLDTDGVNLLAVMCHEDVDATRTTS 1349
Query: 1561 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1620
N + E+ +VLGIEAVR+++ E+ +V+ F G YVNYRHLA+LCD MT +GHLMAITRHGI
Sbjct: 1350 NHLTEVIEVLGIEAVRRALLDELRSVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGI 1409
Query: 1621 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
NR DTG LMRCSFEETVD+L+DAA HAE+D +RGV+ENI++GQL +GTG L L+ +
Sbjct: 1410 NRNDTGPLMRCSFEETVDILLDAAVHAESDYLRGVTENIMLGQLAPIGTGGCSLFLNDQM 1469
Query: 1681 CKDGIEIPLAT 1691
+ IE+ L +
Sbjct: 1470 LQQAIELQLPS 1480
Score = 64.7 bits (156), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
I+ +IN F DL+CIF+DDNA+KL+LR+RI+N + S+ + +D+ D++FL+ IE+
Sbjct: 1229 IANEINREFDGDLSCIFSDDNADKLILRLRIINDEASRGEILDDSAG---DEVFLKKIES 1285
Query: 64 NMLSDMTLQFIRIMN 78
NML++M+L+ I +N
Sbjct: 1286 NMLAEMSLRGIPDIN 1300
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 231 bits (589), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 169/260 (65%), Gaps = 17/260 (6%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
DD FLR +E+ MLS M L GI I KV+M + + +I ++G + +W+L+TDG
Sbjct: 1252 DDTFLRRVESMMLSQMVLCGIPNIKKVFMR----NDDRSMINPDTGAYYTKKEWVLDTDG 1307
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L++V+S DVD RT SNDI EI QVLGIEAVR ++ KE+ V+ F G YVNYRHLA+
Sbjct: 1308 VNLLEVMSHPDVDFSRTVSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAM 1367
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
L DVMT +GHLMAITRHGINR ++G LMRCSFEETV++LM+AA +E D + GV+ENII+
Sbjct: 1368 LADVMTYRGHLMAITRHGINRVESGPLMRCSFEETVEILMEAALFSETDNICGVTENIIL 1427
Query: 1662 GQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMIHNPLQTP-H 1720
GQLP +GTG F++ L+ + K+ I L P M TPS+ QTP +
Sbjct: 1428 GQLPPLGTGSFEVYLNQDMIKNAHSISL-------PEPMAITYPDTPSNTGG---QTPSY 1477
Query: 1721 NTSLTNATHQ--SRDKAFAP 1738
+ T HQ S + F+P
Sbjct: 1478 DGGSTPYHHQFSSFEAPFSP 1497
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 14/117 (11%)
Query: 14 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 73
D LNCIF+DDNA+KL++RIR + +++K E A D +DD FLR +E+ MLS M L
Sbjct: 1218 DKLNCIFSDDNADKLIIRIRTIMDNENK----ESAND--DDDTFLRRVESMMLSQMVLCG 1271
Query: 74 IR-----IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT---LQFIRIMNSD 122
I M +DD M + + + + L N+L M+ + F R +++D
Sbjct: 1272 IPNIKKVFMRNDDRSMINPDTGAYYTKKEWVLDTDGVNLLEVMSHPDVDFSRTVSND 1328
>gi|157841390|gb|ABV83149.1| RNA polymerase 2 [Acrobeloides maximus]
Length = 616
Score = 231 bits (589), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/151 (69%), Positives = 129/151 (85%), Gaps = 2/151 (1%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQGIE+I KVYMH PQTD KK
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGIESISKVYMHKPQTDDKK 525
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+ +T+ G F+ +++W+LETDGT+L+KVLSE VDPVRT+SNDICEIF+VLGIEAVRK++
Sbjct: 526 RVELTQDGSFRMVSEWMLETDGTALLKVLSEPHVDPVRTYSNDICEIFEVLGIEAVRKAI 585
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
E+EMN V+ F G YVNYRHLALLCDVMTAKG
Sbjct: 586 EREMNQVISFDGSYVNYRHLALLCDVMTAKG 616
Score = 97.4 bits (241), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+EKI+ GFGDDL+ I+ DDNA+KLV IR+ NS K + E+ +DKMEDD FL+C
Sbjct: 437 MEAIAEKIHKGFGDDLHVIYTDDNADKLVFHIRLTNSTADK--EGEEQIDKMEDDTFLKC 494
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 495 IESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IR+ NS K + E+ +DKMEDD FL+CIE+NMLSD+TLQ I
Sbjct: 468 IRLTNSTADK--EGEEQIDKMEDDTFLKCIESNMLSDLTLQGI 508
>gi|222639936|gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
Length = 1526
Score = 231 bits (588), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 165/238 (69%), Gaps = 12/238 (5%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+RI N + K +QDE EDD+FL+ IE+NML++M L+GI I KV++ + +
Sbjct: 928 VRITNDEAPKGEIQDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNK 982
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
++ FKA +W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+
Sbjct: 983 -----FEDNVGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR 1037
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1038 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1097
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1695
D+L+DAA +AE+D +RGV+ENI++GQL +GTG L L+ + + IE+ L + + G
Sbjct: 1098 DILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEG 1155
Score = 80.1 bits (196), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 11/122 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL+CIFNDDNA+KL+LR+RI N + K +QDE EDD+FL+ I
Sbjct: 900 IAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDES-----AEDDVFLKKI 954
Query: 62 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 121
E+NML++M L+ I D +K+ + V+K ED++ + ML + + +M
Sbjct: 955 ESNMLTEMALRGI----PDINKVFIKYGKVNKFEDNVGFKADNEWMLDTEGVNLLAVMCH 1010
Query: 122 DD 123
+D
Sbjct: 1011 ED 1012
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 229 bits (583), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 138/184 (75%), Gaps = 2/184 (1%)
Query: 1496 DMTLQGIEAIGKVYMHLPQTDSKKRI--IITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
++ L+G+E I + Y+ P+T +++ E+G F++ + W++ETDG+SL KVLS V
Sbjct: 1302 NLHLKGVEEISRGYISKPETKEPEKLKRYYDENGTFQSKSGWIIETDGSSLAKVLSHPHV 1361
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
DP + +NDI E+FQV GIEA RK+VE E+ V+ G VNYRHL+LLCD+MT KG LM
Sbjct: 1362 DPENSSTNDIVEVFQVFGIEAARKAVENEIINVVTSGGANVNYRHLSLLCDIMTNKGSLM 1421
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
AITRHGINRQ TGALMR SFEETVD+L++AAAHAE D MRGVSENI++G L +GTG FD
Sbjct: 1422 AITRHGINRQSTGALMRASFEETVDILLEAAAHAETDTMRGVSENIMLGNLAPVGTGYFD 1481
Query: 1674 LLLD 1677
L +D
Sbjct: 1482 LFID 1485
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 229 bits (583), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 188/300 (62%), Gaps = 28/300 (9%)
Query: 1470 MQDE-EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1528
MQD+ E+A + E+D+F+R IE NML +TL+G++ I +V+M + +I +GE
Sbjct: 1142 MQDKDEEAFENTEEDIFIRQIEHNMLDSVTLRGVKGIRRVFM-----VEHDKPMIDAAGE 1196
Query: 1529 F--KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTV 1586
++ +W+LETDG +L VLS +D RT+SN E+F+VLGIEA R ++ +E+ V
Sbjct: 1197 LQPRSAKEWVLETDGVNLKSVLSVDGIDFTRTYSNKCPEVFEVLGIEAARAAILRELRNV 1256
Query: 1587 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1646
++F G YVNYRHLALL D+MT +G LMAITRHGINR DTGALMRCSFEETV++LM+AAA
Sbjct: 1257 IEFDGSYVNYRHLALLTDLMTNRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAV 1316
Query: 1647 AEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI---EIPL----ATGMMGG--P 1697
E D GV+EN++ GQ+ MGTG FD+ LD + KD I +P+ A M GG P
Sbjct: 1317 GEKDDCYGVAENVLFGQMAPMGTGSFDVALDVDMLKDVIVDSRLPIQNMMAAQMGGGATP 1376
Query: 1698 AGMFFGSAATP----SSMIHNPLQT---PHNTSLTNATHQSRDKAFAP-SELFLSPDSRY 1749
AG G A TP S M +T + TNA S +F P + + PDSR+
Sbjct: 1377 AG---GLAMTPYDSASPMQAEAWRTEGAAFSPLATNADEASGGFSFIPFGQSPMGPDSRF 1433
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
M I+++I F D+ I +DDNAEKL+LR R + MQD+ E+A + E+D+F+R
Sbjct: 1106 MAYIADRIEQAFYPDMKVIPSDDNAEKLILRCRPI-----VMQDKDEEAFENTEEDIFIR 1160
Query: 60 CIEANMLSDMTLQFIR 75
IE NML +TL+ ++
Sbjct: 1161 QIEHNMLDSVTLRGVK 1176
>gi|157841410|gb|ABV83162.1| RNA polymerase 2 [Pristionchus pacificus]
Length = 318
Score = 228 bits (582), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 125/149 (83%), Gaps = 3/149 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQGIE+I KVYMH P TD KK
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGIESISKVYMHKPTTDDKK 229
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R IIT G FKAIA+W+LETDGT+L++VLSE++VDP RT SNDICEIF++LGIEAVRK++
Sbjct: 230 RTIITPDGSFKAIAEWILETDGTALLRVLSEKNVDPARTXSNDICEIFEILGIEAVRKAI 289
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTA 1608
E+E + V+ F G YVNYRHLALLCDVMTA
Sbjct: 290 ERERHQVISFDGSYVNYRHLALLCDVMTA 318
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+EKI+ GFGDDLN I+ DDNA+KLV R+RI N D D E+ VDKMEDD+FLRC
Sbjct: 142 MEAIAEKIHNGFGDDLNVIYTDDNADKLVFRLRITNQDKG---DSEEQVDKMEDDVFLRC 198
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 199 IESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 3/43 (6%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D D E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 173 LRITNQDKG---DSEEQVDKMEDDVFLRCIESNMLSDLTLQGI 212
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 227 bits (579), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 146/198 (73%), Gaps = 5/198 (2%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSL 1544
FL+ IE +ML D+ L GI+ I +VYM D KK++I T +G + + +W LETDG +L
Sbjct: 1298 FLKRIETHMLDDVELGGIKGIQRVYM----VDQKKQVI-TPAGTWGSEQEWTLETDGLNL 1352
Query: 1545 MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
+VL+ VD RT+SN I E++ VLGIEA R ++ +E+ V++F G YVNYRHL+LLCD
Sbjct: 1353 RQVLTIDGVDARRTYSNSIVEVYNVLGIEAARAALLRELRLVIEFDGSYVNYRHLSLLCD 1412
Query: 1605 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
+MT +G LMAITRHGINR DTGALMRCSFEETV++LM+AA+ AE D GV+EN+++GQL
Sbjct: 1413 LMTNRGRLMAITRHGINRADTGALMRCSFEETVEILMEAASVAEKDYCTGVAENVLLGQL 1472
Query: 1665 PRMGTGCFDLLLDAEKCK 1682
MGTG FD +LD E K
Sbjct: 1473 APMGTGAFDTMLDLEALK 1490
Score = 43.5 bits (101), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M I+ KI+A F DL I+++D AEKLV+R R + S++ D+ D D++ FL+
Sbjct: 1245 MAGIASKISAVFQSDLFVIWSEDTAEKLVIRCRTLQSEEKDDDDDADEQDEV---AFLKR 1301
Query: 61 IEANMLSDMTLQFIR 75
IE +ML D+ L I+
Sbjct: 1302 IETHMLDDVELGGIK 1316
>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
nostochinearum]
Length = 1852
Score = 226 bits (577), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/270 (47%), Positives = 172/270 (63%), Gaps = 15/270 (5%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSL 1544
FLR IE +ML++M L+GI I KV+M K+I ++ +W+L+T+G +L
Sbjct: 1272 FLRRIEGDMLTEMALRGIAQIRKVFMR-----EAKKITFDADHKYMHEKEWVLDTEGCNL 1326
Query: 1545 MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
++V+S +DVD RT SNDI EI QVLGIEAVR++ KE+ V+ F G YVNYRHLA L D
Sbjct: 1327 LEVMSCQDVDHTRTTSNDIVEIIQVLGIEAVRQAALKELRDVISFDGSYVNYRHLATLAD 1386
Query: 1605 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
VMT +GHLM+ITRHGINR TGA+MRCSFEETV++LMDAA +AE D R V+ENI++GQL
Sbjct: 1387 VMTYRGHLMSITRHGINRVPTGAMMRCSFEETVEILMDAAVYAETDHCRSVTENIMLGQL 1446
Query: 1665 PRMGTGCFDLLLDAEKCKDGIEIPL--ATGMMGGPAGMFFGSAATPSSMIHNPLQTPHNT 1722
++GTG FDL L+ + PL +TG + G + + T I +P TP++T
Sbjct: 1447 CQLGTGSFDLFLNDK----AFSTPLNRSTGGVDGQPNLVGEGSPT----IGSPQMTPYDT 1498
Query: 1723 SLTNATHQSRDKAFAPSELFLSPDSRYPYI 1752
+T A QS SP + P++
Sbjct: 1499 HMTPALQQSPGGTPFLDGATFSPYAESPFV 1528
Score = 49.3 bits (116), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M+ I E+I FG DL+ I++DDNA KL L IRI N ++ EE+A ++ FLR
Sbjct: 1218 MKDIDERIAVDFGGDLHVIYSDDNAAKLSLHIRIKNQEEEAKNQEEEASG--DEHEFLRR 1275
Query: 61 IEANMLSDMTLQFI 74
IE +ML++M L+ I
Sbjct: 1276 IEGDMLTEMALRGI 1289
>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
Length = 1667
Score = 226 bits (577), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 169/245 (68%), Gaps = 9/245 (3%)
Query: 1465 SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT 1524
+ + K D ++ V +ED++FLR IEA +LS + L+GI I KV++ ++ +
Sbjct: 1210 TPEGKAADADEGV--IEDEVFLRRIEAQLLSTLALRGIPDIKKVFIR----EANSTQLNE 1263
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
+G F+ ++W+L+T+G +L++V++ DVD RT SN + E+ +LGIEAVR ++ KE+
Sbjct: 1264 ATGTFEKHSEWMLDTEGCNLLEVMAHPDVDFSRTTSNHLVEVITILGIEAVRNALLKELR 1323
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +TG LMRCSFEETVD+LM+AA
Sbjct: 1324 GVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRAETGPLMRCSFEETVDILMEAA 1383
Query: 1645 AHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGS 1704
A +E D M GVSENI++GQ +GTG F L L+ E KD I++ L G AGM +
Sbjct: 1384 AFSERDGMTGVSENIMLGQFCPVGTGEFGLHLNEEMLKDAIDLDLFGNPQGAGAGM---T 1440
Query: 1705 AATPS 1709
+ATP
Sbjct: 1441 SATPG 1445
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 57/84 (67%), Gaps = 11/84 (13%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++E+I+ F DD++ IFNDDN+EKL+LR+R++ + + K D ++ V +ED++FLR IEA
Sbjct: 1178 VAERISEEFQDDIHVIFNDDNSEKLILRLRLI-TPEGKAADADEGV--IEDEVFLRRIEA 1234
Query: 64 NMLSDMTLQ--------FIRIMNS 79
+LS + L+ FIR NS
Sbjct: 1235 QLLSTLALRGIPDIKKVFIREANS 1258
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 226 bits (577), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 172/264 (65%), Gaps = 20/264 (7%)
Query: 1435 VDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANML 1494
D + D+F+ E N S+ + R++ D EED +D +E+D+FLR +E ML
Sbjct: 1082 ADNFKTDLFVIWSEDN--SEKLIIRCRVLGGAD----KEEDGMDTVEEDIFLRQLENTML 1135
Query: 1495 SDMTLQGIEAIGKVYM--HLPQTDSKKRIIITESGEFKAIAD--WLLETDGTSLMKVLSE 1550
+ ++L+G+ I +V++ H R+ ITE G KA ++ W+LETDG +L V+S
Sbjct: 1136 NSISLRGVTGIQRVFLLEH-------DRVSITEEGSIKAHSEKEWVLETDGVNLKAVMSI 1188
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT+SN E+F VLGIEA R ++ KE+ V++F G YVNYRHL+LLCD+MT +G
Sbjct: 1189 GGVDFKRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFDGSYVNYRHLSLLCDLMTHRG 1248
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
LMAITRHGINR DTGALMR SFEETV++LM+AAA E D G++EN+I GQ+ MGTG
Sbjct: 1249 ILMAITRHGINRADTGALMRSSFEETVEILMEAAAVGERDDCHGIAENVIFGQMAPMGTG 1308
Query: 1671 CFDLLLDAEKCKDGI---EIPLAT 1691
FD+ LD + KD I +P+ T
Sbjct: 1309 AFDVALDIDMLKDVIVDHRLPVQT 1332
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN+EKL++R R++ D EED +D +E+D+FLR
Sbjct: 1074 MSYVAGRIADNFKTDLFVIWSEDNSEKLIIRCRVLGGAD----KEEDGMDTVEEDIFLRQ 1129
Query: 61 IEANMLSDMTLQFI 74
+E ML+ ++L+ +
Sbjct: 1130 LENTMLNSISLRGV 1143
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 226 bits (575), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/212 (55%), Positives = 148/212 (69%), Gaps = 10/212 (4%)
Query: 1467 DSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT-E 1525
D K DEE + E+D L+ IEA+ML + L+GI I KVYM K ++ + E
Sbjct: 1247 DPKAMDEEL---EAEEDQMLKRIEAHMLDLIALRGIPGISKVYM------VKHKVSVPDE 1297
Query: 1526 SGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNT 1585
SGE+K W LETDG +L +V++ VD RT+SN EI VLGIEA R S+ KE+
Sbjct: 1298 SGEYKNEELWALETDGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILN 1357
Query: 1586 VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAA 1645
V+ F G YVNYRH+ALL DVMT++G+LMAITRHGINR DTGALMRCSFEETV++L +A A
Sbjct: 1358 VIAFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILFEAGA 1417
Query: 1646 HAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
AE D RGVSEN+++GQL MGTG FD+++D
Sbjct: 1418 AAELDDCRGVSENVMLGQLAPMGTGAFDVMID 1449
Score = 44.3 bits (103), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M +++KI+ F DDL ++++DNA+KL++R R++ D K DEE + E+D L+
Sbjct: 1211 MNQVADKISEVFSDDLFVMWSEDNADKLIIRCRVIR--DPKAMDEE---LEAEEDQMLKR 1265
Query: 61 IEANMLSDMTLQFI 74
IEA+ML + L+ I
Sbjct: 1266 IEAHMLDLIALRGI 1279
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 225 bits (574), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 189/311 (60%), Gaps = 28/311 (9%)
Query: 1435 VDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANML 1494
+ + D+F+ E N SD + R++ D ++D ++ +E+D+FLR +E ML
Sbjct: 1228 AESFKTDLFVIWSEDN--SDKLVIRCRVLGGAD----KDDDGMESVEEDIFLRQLETTML 1281
Query: 1495 SDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVD 1554
+ ++L+G++ I +V++ Q D I I + G +W+LETDG +L V++ VD
Sbjct: 1282 NSISLRGVKGINRVFLQE-QDD----IYINDEGSIATKKEWVLETDGVNLKTVMTISGVD 1336
Query: 1555 PVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMA 1614
RT+SN+ E+F VLG+EA R ++ KE+ V++F G YVNYRHL+LLCD+MT +GHLMA
Sbjct: 1337 FRRTYSNNCTEVFDVLGVEAARAAIMKELRNVIEFDGSYVNYRHLSLLCDLMTQRGHLMA 1396
Query: 1615 ITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
ITRHGINR DTGALMRCSFEETV++LM+AAA E D GV+EN++ GQ+ MGTG FD+
Sbjct: 1397 ITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHGVAENVLFGQMAPMGTGAFDV 1456
Query: 1675 LLDAEKCKDGI---EIP----LATGMMGGPAGMFFGSAATPSSMIHNPLQTPHNTSLTNA 1727
LD + KD I +P LA GG TP + P T ++ + + A
Sbjct: 1457 ALDIDMLKDAIVDHRLPVQNMLAAQADGG---------MTPGQVAMTPYDT-NSPAWSEA 1506
Query: 1728 THQSRDKAFAP 1738
+ AF+P
Sbjct: 1507 NFKGESAAFSP 1517
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN++KLV+R R++ D ++D ++ +E+D+FLR
Sbjct: 1220 MAYVAGRIAESFKTDLFVIWSEDNSDKLVIRCRVLGGAD----KDDDGMESVEEDIFLRQ 1275
Query: 61 IEANMLSDMTLQFIRIMN------SDDSKMQDEEDAVDKME 95
+E ML+ ++L+ ++ +N DD + DE K E
Sbjct: 1276 LETTMLNSISLRGVKGINRVFLQEQDDIYINDEGSIATKKE 1316
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 225 bits (574), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/270 (47%), Positives = 173/270 (64%), Gaps = 27/270 (10%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSK 1518
R++ D E+D + +E+D+FLR +E ML+ ++L+G+ +I +V++ H
Sbjct: 1254 RVLGGAD----KEDDGMGTVEEDIFLRQLENTMLNSVSLRGVPSIERVFLLEH------- 1302
Query: 1519 KRIIITESGEFKAIA---DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1575
+IIIT G A +W+LETDG +L V++ VD RT+SN E+F VLGIEA
Sbjct: 1303 DKIIITPDGGIDARGGEKEWVLETDGVNLKAVMTVDGVDFRRTYSNSCVEVFGVLGIEAA 1362
Query: 1576 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1635
R ++ KE+ V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEE
Sbjct: 1363 RAAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEE 1422
Query: 1636 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI---EIPLATG 1692
TV++LM+AAA E D G++EN++ GQ+ MGTG FD+ LD + KD I IP T
Sbjct: 1423 TVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDIDMLKDVIVDHRIPAHTS 1482
Query: 1693 MMGGP---AGMFFGSAA-TP---SSMIHNP 1715
++ P GM G A TP SS + NP
Sbjct: 1483 LV-APQMDGGMTPGQVAMTPYDSSSPVWNP 1511
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN+EKL++R R++ D E+D + +E+D+FLR
Sbjct: 1222 MAYVAGRIAESFKTDLFVIWSEDNSEKLIVRCRVLGGAD----KEDDGMGTVEEDIFLRQ 1277
Query: 61 IEANMLSDMTLQFI 74
+E ML+ ++L+ +
Sbjct: 1278 LENTMLNSVSLRGV 1291
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 225 bits (574), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 156/227 (68%), Gaps = 11/227 (4%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
R+++S D +D+ + V +E+D+FLR +E ML+ +TL+G+ I +V++ + R
Sbjct: 1257 RVLSSGD---KDDPEEVG-LEEDIFLRQLENTMLNSVTLRGVRGINRVFL-----TASDR 1307
Query: 1521 IIITESGEFKA--IADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+ + G K A+W+LETDGT+L V+ VD RT+SN+ EIF VLG+EA R +
Sbjct: 1308 VTLAPDGSIKTEKGAEWILETDGTNLKGVMCLDGVDSTRTYSNNCVEIFTVLGVEAARAA 1367
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ KE+ V++F G YVNYRHL LLCDVMT +G LM ITRHGINR DTGALMRCSFEETV+
Sbjct: 1368 LMKEIRNVIEFDGSYVNYRHLGLLCDVMTHRGTLMPITRHGINRADTGALMRCSFEETVE 1427
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1685
+LM+AAA E D G++EN++ GQ+ MGTG FD+ LD + KD I
Sbjct: 1428 ILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDIDMLKDAI 1474
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN+E LV+R R+++S D +D+ + V +E+D+FLR
Sbjct: 1225 MHYVASRIAECFKSDLFVIWSEDNSETLVIRCRVLSSGD---KDDPEEVG-LEEDIFLRQ 1280
Query: 61 IEANMLSDMTLQFIRIMN 78
+E ML+ +TL+ +R +N
Sbjct: 1281 LENTMLNSVTLRGVRGIN 1298
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 225 bits (574), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/287 (44%), Positives = 174/287 (60%), Gaps = 28/287 (9%)
Query: 1484 MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIII-TESGEFKAIADWLLETDGT 1542
+FLR +E ++LS+M L G+ I KVYM + D RI+ +G +W+L+TDGT
Sbjct: 1283 LFLRKVEGSLLSEMNLGGVPDIKKVYMR--EAD---RIVPDPRTGGLSVEKEWVLDTDGT 1337
Query: 1543 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1602
+L+ V+S +DVD RT SND+ E+F LGIE VR ++ E+ V+ F G YVNYRHLA+L
Sbjct: 1338 NLLAVMSHKDVDYTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYRHLAIL 1397
Query: 1603 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1662
D+MT +GH+M+ITRHGINR +TGALMRCSFEET D+L++AA + E D M+GV+ENI++G
Sbjct: 1398 ADIMTCRGHIMSITRHGINRVETGALMRCSFEETADILLEAAMYGEVDDMKGVAENIMLG 1457
Query: 1663 QLPRMGTGCFDLLLDAEKCKDGI------EIPLATGMMGGPAGMF-------FGS----A 1705
Q+ +GTG F LLL+ + K+ I P A G+M PA F GS
Sbjct: 1458 QMAPVGTGEFGLLLNEKALKNLITAEEDARTPRA-GLM-SPAHGFDTPRAFDAGSMTPYP 1515
Query: 1706 ATPSSMIHNPLQTPHNTSLTN-ATHQSRDKAFAPSELFLSPDSRYPY 1751
ATP + TP + A D AF+P+ SP PY
Sbjct: 1516 ATPGQATPSYPYTPIGGQFSPFAASPYGDAAFSPTP--TSPAYASPY 1560
>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1646
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 192/327 (58%), Gaps = 51/327 (15%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN + K +D ED++FL+ +E MLS++ L+GI I KV++ ++K+
Sbjct: 1234 IRIMNPEGVKYEDAS-----TEDEVFLKRLETQMLSNLALRGIPDIKKVFIR----EAKQ 1284
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
I +++ F+ +W+L+T+G +L++V++ DVD RT SN + E+ QVLGIEAVR ++
Sbjct: 1285 NAINSKTELFEKTTEWMLDTEGVNLLEVMAHPDVDFTRTTSNHLIEVIQVLGIEAVRNTL 1344
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
+E+ V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +TG LMRCSFEETVD+
Sbjct: 1345 LRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDI 1404
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI---------PLA 1690
LM+A+A +E D M G SENI++GQ +GTG F L L+ E +D +E+ P
Sbjct: 1405 LMEASAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLNDELLQDAVELELFGDGSRTPGH 1464
Query: 1691 TGMM-----GGPAGMFFGS--------------------AATPSS--MIHNPLQTP---H 1720
GMM G P +GS A +P S M +P +P
Sbjct: 1465 GGMMTPGRDGTPG---WGSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMAFSPGMSPGGFG 1521
Query: 1721 NTSLTNATHQSRDKAFAPSELFLSPDS 1747
S T+ + A++P+ SP S
Sbjct: 1522 GYSPTSPAYSPTSPAYSPTSPAYSPTS 1548
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%), Gaps = 5/71 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++E+IN F DL+CIFNDDN+EKLVLRIRIMN + K +D ED++FL+ +E
Sbjct: 1206 VAERINEDFAGDLSCIFNDDNSEKLVLRIRIMNPEGVKYEDAS-----TEDEVFLKRLET 1260
Query: 64 NMLSDMTLQFI 74
MLS++ L+ I
Sbjct: 1261 QMLSNLALRGI 1271
>gi|146423605|ref|XP_001487729.1| hypothetical protein PGUG_01105 [Meyerozyma guilliermondii ATCC 6260]
gi|146388850|gb|EDK37008.1| hypothetical protein PGUG_01105 [Meyerozyma guilliermondii ATCC 6260]
Length = 1018
Score = 225 bits (573), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 144/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI+ I +V+M K + E+GEFK +W+LETD
Sbjct: 523 EEDQILKRIEAHMLESISLRGIQGITRVFMM-----QHKLSLPDETGEFKQGQEWVLETD 577
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SN+ EI VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 578 GVNLADVMAVPGVDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 637
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMTA+GHLMAITRHGINR DTGALMRCSFEETV++L++A A AE D G+SEN++
Sbjct: 638 LLVDVMTARGHLMAITRHGINRADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVV 697
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQL +GTG FD+++D
Sbjct: 698 LGQLAPLGTGAFDVMVD 714
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 5/75 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D K DE+ VD E+D L+
Sbjct: 476 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR--DPKSLDED--VD-AEEDQILKR 530
Query: 61 IEANMLSDMTLQFIR 75
IEA+ML ++L+ I+
Sbjct: 531 IEAHMLESISLRGIQ 545
>gi|152060506|sp|A5DCV3.2|RPB1_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit
Length = 1579
Score = 224 bits (572), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 144/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI+ I +V+M K + E+GEFK +W+LETD
Sbjct: 1089 EEDQILKRIEAHMLESISLRGIQGITRVFMM-----QHKLSLPDETGEFKQGQEWVLETD 1143
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SN+ EI VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 1144 GVNLADVMAVPGVDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 1203
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMTA+GHLMAITRHGINR DTGALMRCSFEETV++L++A A AE D G+SEN++
Sbjct: 1204 LLVDVMTARGHLMAITRHGINRADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVV 1263
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQL +GTG FD+++D
Sbjct: 1264 LGQLAPLGTGAFDVMVD 1280
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 5/75 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D K DE+ VD E+D L+
Sbjct: 1042 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR--DPKSLDED--VD-AEEDQILKR 1096
Query: 61 IEANMLSDMTLQFIR 75
IEA+ML ++L+ I+
Sbjct: 1097 IEAHMLESISLRGIQ 1111
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum NRRL
Y-27907]
Length = 1748
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/197 (55%), Positives = 147/197 (74%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI+ I +V+M + SK E+GEFK +W+LETD
Sbjct: 1265 EEDQILKRIEAHMLESISLRGIKGITRVFM-MQHKVSKP----DETGEFKQGKEWVLETD 1319
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SND EI VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 1320 GVNLADVMAVPGVDSSRTYSNDFIEILSVLGIEATRTALFKEILNVIAFDGSYVNYRHMA 1379
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L++AAA AE D RG+SEN++
Sbjct: 1380 LLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILLEAAASAELDDCRGISENVM 1439
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FD+++D
Sbjct: 1440 LGQMAPLGTGSFDVMVD 1456
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D + ++ DA E+D L+
Sbjct: 1218 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EEDQILKR 1272
Query: 61 IEANMLSDMTLQFIR 75
IEA+ML ++L+ I+
Sbjct: 1273 IEAHMLESISLRGIK 1287
>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
Length = 1739
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 153/219 (69%), Gaps = 10/219 (4%)
Query: 1460 IRIMNSDDSKMQDEE-DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IR D K DEE DA E+D L+ IEA+ML ++L+GI I +V+M + ++
Sbjct: 1239 IRCRVVRDPKSLDEEADA----EEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVNTP 1294
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+GEFK +W+LETDG +L V++ VD RT+SN+ EI VLGIEA R +
Sbjct: 1295 D-----ATGEFKQGKEWVLETDGVNLADVMAVPGVDSSRTYSNNFIEILSVLGIEATRAA 1349
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ KE+ VL F G YVNYRH+ALL DVMT++GHLMAITRHGINR DTGALMRCSFEETV+
Sbjct: 1350 LFKEILNVLSFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVE 1409
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
+L++A A AE D RG+SEN+++GQ+ +GTG FD++LD
Sbjct: 1410 ILLEAGASAELDDCRGISENVMLGQMAPLGTGAFDVMLD 1448
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D + +E DA E+D L+
Sbjct: 1210 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEEADA----EEDQILKR 1264
Query: 61 IEANMLSDMTLQFI 74
IEA+ML ++L+ I
Sbjct: 1265 IEAHMLESISLRGI 1278
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 145/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI I +V+M + S ESGE+K +W+LETD
Sbjct: 1262 EEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSSPD-----ESGEYKQGQEWVLETD 1316
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SN+ EI VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 1317 GVNLADVMAVPGVDATRTYSNNFIEILSVLGIEATRTALFKEILNVIAFDGSYVNYRHMA 1376
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L++AA+ AE D RG+SEN++
Sbjct: 1377 LLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAASSAELDDCRGISENVM 1436
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FD+++D
Sbjct: 1437 LGQMAPLGTGAFDVMVD 1453
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 7/75 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
M ++EKI+ FG+DL I++DD A+KL++R R++ D K DE DA E+D L+
Sbjct: 1215 MSQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR--DPKTLDEDADA----EEDQILK 1268
Query: 60 CIEANMLSDMTLQFI 74
IEA+ML ++L+ I
Sbjct: 1269 RIEAHMLESISLRGI 1283
>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1772
Score = 224 bits (571), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 145/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI I +V+M + S ESGE+K +W+LETD
Sbjct: 1262 EEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSSPD-----ESGEYKQGQEWVLETD 1316
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SN+ EI VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 1317 GVNLADVMAVPGVDSTRTYSNNFIEILSVLGIEATRTALFKEILNVIAFDGSYVNYRHMA 1376
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L++AA+ AE D RG+SEN++
Sbjct: 1377 LLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAASSAELDDCRGISENVM 1436
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FD+++D
Sbjct: 1437 LGQMAPLGTGAFDVMVD 1453
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 7/75 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
M ++EKI+ FG+DL I++DD A+KL++R R++ D K DE DA E+D L+
Sbjct: 1215 MSQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR--DPKTLDEDADA----EEDQILK 1268
Query: 60 CIEANMLSDMTLQFI 74
IEA+ML ++L+ I
Sbjct: 1269 RIEAHMLESISLRGI 1283
>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 1673
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/286 (43%), Positives = 175/286 (61%), Gaps = 24/286 (8%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIM ++ K D +ED++FL+ IE MLS++ L+GI I KV++ ++K
Sbjct: 1254 IRIMKAEGEKYDD-----SSIEDEVFLKRIETQMLSNLALRGIPDIKKVFIR----EAKS 1304
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ + F+ +W+L+T+G +L++V++ DVD RT SN + E+ Q+LGIEAVR ++
Sbjct: 1305 NAVNPRTQLFEKHTEWMLDTEGVNLLEVMAHPDVDFTRTTSNHLIEVIQILGIEAVRNTL 1364
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
+E+ V++F G YVNYRHLA+L +VMT +GHL++ITRHGINR +TGALMRCSFEETVD+
Sbjct: 1365 LRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLVSITRHGINRAETGALMRCSFEETVDI 1424
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AAA +E D M G SENI++GQ +GTG F L LD E D +E+ L
Sbjct: 1425 LMEAAAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLDQEMLLDAVELDL---------- 1474
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSP 1745
F +A TP H TP +S +P +SP
Sbjct: 1475 --FETARTPG---HYGSMTPGREGTPGYGAKSPSFLLSPGGAMMSP 1515
Score = 75.9 bits (185), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++E+IN FG DL+CIFNDDN+EKLVLRIRIM ++ K D +ED++FL+ IE
Sbjct: 1226 VAERINEDFGGDLSCIFNDDNSEKLVLRIRIMKAEGEKYDD-----SSIEDEVFLKRIET 1280
Query: 64 NMLSDMTLQFI 74
MLS++ L+ I
Sbjct: 1281 QMLSNLALRGI 1291
>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1745
Score = 223 bits (569), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 145/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI I +V+M + SK +GEFK +W+LETD
Sbjct: 1251 EEDQILKRIEAHMLESISLRGIPGITRVFM-MQHKVSKP----DATGEFKQGKEWVLETD 1305
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SND EI VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 1306 GVNLADVMAVPGVDSARTYSNDFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 1365
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN++
Sbjct: 1366 LLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAASAELDDCKGISENVM 1425
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FD+++D
Sbjct: 1426 LGQMAPLGTGSFDVMVD 1442
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FGDDL I++DD A+KL++R R++ D + ++ DA E+D L+
Sbjct: 1204 MAQVAEKISQNFGDDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EEDQILKR 1258
Query: 61 IEANMLSDMTLQFI 74
IEA+ML ++L+ I
Sbjct: 1259 IEAHMLESISLRGI 1272
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
gondii ME49]
Length = 1892
Score = 223 bits (568), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 168/261 (64%), Gaps = 19/261 (7%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
D FL+ + L+ +TL+GI I KVYM + + I + G+F+ +W+L+TDG
Sbjct: 1292 GDRFLQKLMVQCLAGITLRGITNISKVYMR----EEARTIYNNQLGKFERTNNWVLDTDG 1347
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L VL VD RT SND+ EIF VLGIEAVR+++ +E+ V+ F G YVNYRHLA+
Sbjct: 1348 CNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHLAI 1407
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCD MT KG+LM+ITRHGINR D G LM+CSFEETV++LM+AA AEAD +RGV+ENI+M
Sbjct: 1408 LCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETVEILMEAAVFAEADHLRGVTENIMM 1467
Query: 1662 GQLPRMGTGCFDLLLDAEKCKDGIEIPLAT----GMMGGPAGMFFGSAATPSSMIHNPLQ 1717
GQL +GTG FD+L+D EK KD A+ G+ G AG F G T S +PL
Sbjct: 1468 GQLCPLGTGYFDVLIDEEKLKD------ASHNLDGLGG--AGEFDGGVGT-SPTSSDPLV 1518
Query: 1718 TPHNTSLTNATHQSRDKAFAP 1738
+ S T + H + F+P
Sbjct: 1519 ITPDGSFTPSPHL--NSVFSP 1537
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 223 bits (568), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 145/196 (73%), Gaps = 9/196 (4%)
Query: 1484 MFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+ L+ IE++ML ++L+G+ I +V+M H K + +E+GEF +W+LETDG
Sbjct: 1267 VLLKRIESHMLESISLRGVPNISRVFMMEH-------KTVYQSENGEFVRGEEWVLETDG 1319
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L +V++ +VDP RT+SN EI QVLGIEA R ++ KE+ V++F G YVNYRHL+L
Sbjct: 1320 INLAEVMAVENVDPRRTYSNSFVEILQVLGIEATRAALLKELRNVIEFDGSYVNYRHLSL 1379
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
L D MT++GHLMAITRHGINR +TG LMRCSFEETV++LM+AAA E D RG+SENI++
Sbjct: 1380 LADTMTSRGHLMAITRHGINRAETGVLMRCSFEETVEILMEAAAAGEMDDCRGISENIML 1439
Query: 1662 GQLPRMGTGCFDLLLD 1677
GQL +GTG FD++LD
Sbjct: 1440 GQLAPLGTGEFDVILD 1455
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
gondii VEG]
Length = 1892
Score = 223 bits (568), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 168/261 (64%), Gaps = 19/261 (7%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
D FL+ + L+ +TL+GI I KVYM + + I + G+F+ +W+L+TDG
Sbjct: 1292 GDRFLQKLMVQCLAGITLRGITNISKVYMR----EEARTIYNNQLGKFERTNNWVLDTDG 1347
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L VL VD RT SND+ EIF VLGIEAVR+++ +E+ V+ F G YVNYRHLA+
Sbjct: 1348 CNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHLAI 1407
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCD MT KG+LM+ITRHGINR D G LM+CSFEETV++LM+AA AEAD +RGV+ENI+M
Sbjct: 1408 LCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETVEILMEAAVFAEADHLRGVTENIMM 1467
Query: 1662 GQLPRMGTGCFDLLLDAEKCKDGIEIPLAT----GMMGGPAGMFFGSAATPSSMIHNPLQ 1717
GQL +GTG FD+L+D EK KD A+ G+ G AG F G T S +PL
Sbjct: 1468 GQLCPLGTGYFDVLIDEEKLKD------ASHNLDGLGG--AGEFDGGVGT-SPTSSDPLV 1518
Query: 1718 TPHNTSLTNATHQSRDKAFAP 1738
+ S T + H + F+P
Sbjct: 1519 ITPDGSFTPSPHL--NSVFSP 1537
>gi|70944683|ref|XP_742247.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521115|emb|CAH84812.1| hypothetical protein PC301248.00.0 [Plasmodium chabaudi chabaudi]
Length = 871
Score = 223 bits (568), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 157/221 (71%), Gaps = 9/221 (4%)
Query: 1463 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII 1522
+N++++ M +ED +D FL+ + LS + L+G+E I KVYM + K
Sbjct: 433 LNNENNTMISKEDT-----EDTFLKKLMEQCLSSLKLRGVENITKVYMR----EESKITY 483
Query: 1523 ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKE 1582
+E+G+F + W+L+TDG +L + VD +T SNDI EIF+VLGIEAVR+++ KE
Sbjct: 484 DSENGKFVRSSHWVLDTDGCNLESIFCAPSVDFKKTISNDIVEIFEVLGIEAVRRALLKE 543
Query: 1583 MNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMD 1642
+ TV+ F YVNYRHL++LCDVMT KG+LM+ITRHGINR D G L++CSFEETV++L++
Sbjct: 544 LRTVISFDSSYVNYRHLSILCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLE 603
Query: 1643 AAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
AAA A+ D +RG++ENI++GQL R+GTG FD+++D +K D
Sbjct: 604 AAAFAQVDNLRGITENIMLGQLCRIGTGVFDIIIDNQKLND 644
>gi|213556958|gb|ACJ53770.1| RNA polymerase II [Plasmodium gallinaceum]
Length = 2200
Score = 223 bits (568), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 166/246 (67%), Gaps = 12/246 (4%)
Query: 1439 EDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT 1498
+DDM+ + NM D TL + + ++ + +ED +D FL+ + LS +
Sbjct: 1627 QDDMYNKSTSKNMDDDATL---KNRSKTNNPLLSKEDT-----EDTFLKKLMEQCLSTLK 1678
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+GIE I KVYM + K TESG+F + W+L+TDG +L + VD +T
Sbjct: 1679 LRGIENITKVYMR----EEAKINYDTESGKFIRSSHWVLDTDGCNLENIFCAPLVDYKKT 1734
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
SNDI EIF+VLGIEAVR+++ KE+ TV+ F YVNYRHL++LCDVMT KG+LM+ITRH
Sbjct: 1735 ISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQKGYLMSITRH 1794
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1678
GINR D G L++CSFEETV++L++AAA A+ D ++G++ENI++GQL ++GTG FD+++D
Sbjct: 1795 GINRVDKGPLIKCSFEETVEILLEAAAFAQVDHLKGITENIMLGQLCKIGTGAFDIIIDN 1854
Query: 1679 EKCKDG 1684
+K D
Sbjct: 1855 QKLNDA 1860
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 156/227 (68%), Gaps = 15/227 (6%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSK 1518
R++ D +ED +D +E+D+FLR +E MLS ++L+G+ I +V++ H
Sbjct: 1254 RVLGGAD----KDEDGMDTVEEDIFLRQLENTMLSSISLRGVPGIERVFLLEH------- 1302
Query: 1519 KRIIITESGEFKAI--ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
+IIIT+ G +A +W+LETDG +L V+ VD RT+SN EIF VLGIEA R
Sbjct: 1303 DKIIITKEGSIEARQEKEWILETDGVNLKAVMCIDGVDFKRTYSNSCVEIFNVLGIEAAR 1362
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
++ KE+ V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEET
Sbjct: 1363 AAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEET 1422
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
V++LM+AAA E D G++EN++ GQ+ MGTG F++ LD + KD
Sbjct: 1423 VEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKD 1469
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN+EKL++R R++ D +ED +D +E+D+FLR
Sbjct: 1222 MPYVAGRIAESFKTDLFVIWSEDNSEKLIIRCRVLGGAD----KDEDGMDTVEEDIFLRQ 1277
Query: 61 IEANMLSDMTLQFI 74
+E MLS ++L+ +
Sbjct: 1278 LENTMLSSISLRGV 1291
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 222 bits (565), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 190/308 (61%), Gaps = 29/308 (9%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ D++M D+E ED++FL+ +E+ ML+++ L+GI I KV++ + +
Sbjct: 1240 IRLL---DNEMGDKEAGPSTTEDEVFLKKLESQMLTNLALRGIPDIKKVFIR--EANVMG 1294
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+TE+ F ++W+L+T+G +L++V++ DVD RT SN + E+ QVLGIEAVR ++
Sbjct: 1295 LDPVTET--FTKKSEWMLDTEGVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRNTL 1352
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +TG LMRCSFEETVD+
Sbjct: 1353 LKELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDI 1412
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI--EIPLATGMMGGP 1697
L++AAA +E D M G+SENI++GQ +GTG F L L+ + K+ + ++ L+ G +G
Sbjct: 1413 LLEAAAFSERDGMNGLSENIMLGQFCPLGTGEFGLHLNEDMLKEAVDLDLGLSEGGLG-- 1470
Query: 1698 AGMFFGSAATPS-------SMIHNPLQ-----------TPHNTSLTNATHQSRDKAFAPS 1739
G+ G TP S + +P +P T + + ++P+
Sbjct: 1471 VGVTPGRGITPGREGAMSPSFLLSPTAHMSPFDDSMRFSPQGTDYGSHAGGGQSPGYSPT 1530
Query: 1740 ELFLSPDS 1747
SP S
Sbjct: 1531 SPAYSPTS 1538
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 54/71 (76%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
I+E+IN F +DL+CIFNDDN+EKL+LRIR++ D++M D+E ED++FL+ +E+
Sbjct: 1212 IAERINQDFQEDLSCIFNDDNSEKLILRIRLL---DNEMGDKEAGPSTTEDEVFLKKLES 1268
Query: 64 NMLSDMTLQFI 74
ML+++ L+ I
Sbjct: 1269 QMLTNLALRGI 1279
>gi|397568287|gb|EJK46059.1| hypothetical protein THAOC_35301 [Thalassiosira oceanica]
Length = 1754
Score = 222 bits (565), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/236 (50%), Positives = 158/236 (66%), Gaps = 13/236 (5%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
EDD+FL+ +E +ML + L+G+E + KV+M +KR+ + F+ I +W+LETD
Sbjct: 1293 EDDVFLKRLEKSMLQTLKLRGVEDVKKVFMR-----EEKRVKWDDERGFQRIDEWVLETD 1347
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G++LM VL VD RT SNDI E+F VLGIE VR ++ E+ V+ F G YVNYRHLA
Sbjct: 1348 GSNLMSVLGIEHVDASRTISNDIVEVFTVLGIEGVRAAILSELRNVISFDGSYVNYRHLA 1407
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
L DVMT GHLMA+ RHGINR ++G L+RCSFEETVD+L DAA +AE + +RGV+ENI+
Sbjct: 1408 CLVDVMTMHGHLMAVDRHGINRVESGPLLRCSFEETVDMLNDAALYAEEEVLRGVTENIM 1467
Query: 1661 MGQLPRMGTGCFDLLLDAEK--------CKDGIEIPLATGMMGGPAGMFFGSAATP 1708
MGQL R+GTG DLLLD +K D +E G++GG GM A+TP
Sbjct: 1468 MGQLARVGTGDIDLLLDEQKVVRDAVEVVVDNLEGDKDLGLVGGGIGMPTPYASTP 1523
Score = 44.7 bits (104), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 12 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE----------EDAVDKMEDDMFLRCI 61
+G DLN + +DDNA+ LV RIRI+N D M ED EDD+FL+ +
Sbjct: 1244 YGSDLNVVVSDDNADDLVARIRIVN--DMPMAHSIDENGNAMMAEDVELGQEDDVFLKRL 1301
Query: 62 EANMLSDMTLQFI 74
E +ML + L+ +
Sbjct: 1302 EKSMLQTLKLRGV 1314
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 221 bits (563), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 136/359 (37%), Positives = 195/359 (54%), Gaps = 69/359 (19%)
Query: 1453 SDMTLQFIRIMNSDDSKMQDEEDAVD-------KMEDD-------MFLRCIEANMLSDMT 1498
+D + +RI D K +D + A D K+E++ FLR +E+NML+++
Sbjct: 1241 ADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEEDIENSTVEFLRRLESNMLNELA 1300
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+G + + KV++ + + KK + + SG + W+L+T+G +L+ VLS VD T
Sbjct: 1301 LKGYKDLKKVFLR--EENDKK--VFSSSG-VATVKQWVLDTEGCNLLAVLSHPYVDHTIT 1355
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
SND+ EI VLGIEA R ++ +EM V++F G YVNYRHLA+LCDVMT +G LMAITRH
Sbjct: 1356 TSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRH 1415
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1678
GINR DTG LMRCSFEETV++L++AA A+ D ++GVS N+++GQL +GTGCF L LD
Sbjct: 1416 GINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGTGCFGLYLDE 1475
Query: 1679 EKCKDGIEI-P-----------------------LATGMMGGPAGMFFGSAATP------ 1708
E K + + P LAT GG A + G A++P
Sbjct: 1476 ELLKQAVAVKPSFVTETKSMYGSLGATTPYHTSGLATPYHGGVATPYHGGASSPWTQGAM 1535
Query: 1709 ---------------SSMIHNPLQTPHNTSLTNATHQ-----SRDKAFAPSELFLSPDS 1747
S +N +P +S T+ HQ S ++P+ SP S
Sbjct: 1536 TPLGRTPSPEYQGGFSPSPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPAYSPSS 1594
Score = 50.1 bits (118), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 14/89 (15%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVD-------KME 53
M +++KI F +D+ C ++DDNA+KL+L +RI D K +D + A D K+E
Sbjct: 1217 MAQVAKKIQEEFQNDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLE 1276
Query: 54 DD-------MFLRCIEANMLSDMTLQFIR 75
++ FLR +E+NML+++ L+ +
Sbjct: 1277 EEDIENSTVEFLRRLESNMLNELALKGYK 1305
>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1738
Score = 221 bits (563), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 167/259 (64%), Gaps = 23/259 (8%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++N DSK +D D +E D+ L+ +EA++L +TL+G++ + + ++ + +
Sbjct: 1252 IRMINQSDSKFED-----DDIEQDIMLKRLEAHILDTLTLRGVKGVDRAFL-----NKET 1301
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
++I T +G A D W L+T GT L VL+ VD RT+SN ++FQV GIE
Sbjct: 1302 KLIETPAGGLLASKDDPRCEEWYLDTSGTELGDVLTIPGVDTTRTYSNHFIQVFQVFGIE 1361
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ +E+ VL F G YVN+RHLALL DVMT++GHLMAITRHGINR DTGALMRCSF
Sbjct: 1362 ATRSALMRELTQVLAFDGSYVNHRHLALLVDVMTSRGHLMAITRHGINRADTGALMRCSF 1421
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1693
EETV++L++AAA E D RG+SEN+++GQL MGTG D+LLD + + I G
Sbjct: 1422 EETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGELDVLLDPKMLETVIS---DNGR 1478
Query: 1694 MGGPAGMFF----GSAATP 1708
MG G+ G AATP
Sbjct: 1479 MGLMPGLAVKGADGGAATP 1497
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ KI + DL IF+D+NAE+ V+RIR++N DSK +D D +E D+ L+
Sbjct: 1221 VEDVATKIKEAYQKDLAVIFSDNNAEEQVIRIRMINQSDSKFED-----DDIEQDIMLKR 1275
Query: 61 IEANMLSDMTLQFIR 75
+EA++L +TL+ ++
Sbjct: 1276 LEAHILDTLTLRGVK 1290
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 221 bits (563), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/224 (50%), Positives = 156/224 (69%), Gaps = 10/224 (4%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
R+++ D +DEED D +E+D+FLR +E ML+ ++L+G+ I +V++ + +
Sbjct: 1287 RVISQGD---KDEEDG-DTVEEDIFLRQLEHTMLNSVSLRGVPGISRVFL-----LAHDK 1337
Query: 1521 IIITESGEF-KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
I++ + G K +W+LETDG +L V+ VD RT+SN EIF VLGIEA R ++
Sbjct: 1338 IVVADDGSIQKGDKEWVLETDGVNLKTVMCIDGVDWKRTYSNSCVEIFGVLGIEAARAAI 1397
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KEM V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEETV++
Sbjct: 1398 MKEMRNVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEETVEI 1457
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
LM+AAA E D G++EN++ GQ+ MGTG FD+ LD + KD
Sbjct: 1458 LMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDMDMLKD 1501
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 16/97 (16%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DNAEKL++R R+++ D +DEED D +E+D+FLR
Sbjct: 1255 MNYVAGRIAESFKTDLFVIWSEDNAEKLIIRCRVISQGD---KDEEDG-DTVEEDIFLRQ 1310
Query: 61 IEANMLSDMTLQFI------------RIMNSDDSKMQ 85
+E ML+ ++L+ + +I+ +DD +Q
Sbjct: 1311 LEHTMLNSVSLRGVPGISRVFLLAHDKIVVADDGSIQ 1347
>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
Length = 1732
Score = 221 bits (563), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 142/202 (70%), Gaps = 4/202 (1%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSL 1544
FLR +E+ +LS M L GI AI KV+M S+ + +G K+ +W+L+TDG +L
Sbjct: 1214 FLRRLESELLSQMNLGGIPAIRKVFMR----QSRFTFVDPGTGTHKSREEWVLDTDGVNL 1269
Query: 1545 MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
+ V+S VD RT SNDI EIF+VLGIEAVR+ + E+ V+ F G YVNYRHLA+L D
Sbjct: 1270 LAVMSHEAVDHTRTTSNDIVEIFEVLGIEAVREVLLNEIRGVISFDGAYVNYRHLAILVD 1329
Query: 1605 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
MT +GHLMAITRHG+NR DTG LM+CSFE T D+L++AA E D +RGV+ENI++GQL
Sbjct: 1330 TMTYRGHLMAITRHGVNRVDTGPLMKCSFEGTTDILLEAAMWGERDGLRGVTENIMLGQL 1389
Query: 1665 PRMGTGCFDLLLDAEKCKDGIE 1686
+GTG F LLL+ + KD IE
Sbjct: 1390 APIGTGSFRLLLNEKMLKDAIE 1411
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica T-34]
Length = 1947
Score = 221 bits (563), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/248 (46%), Positives = 175/248 (70%), Gaps = 15/248 (6%)
Query: 1449 ANMLSDMTLQFIRIMNSDDSKMQ-----------DEEDAVDKMEDDMFLRCIEANMLSDM 1497
A+ +S M Q I +M+S+D+ Q E++A + E+++FL+ + + ML+++
Sbjct: 1388 ASKISAMFGQDIFVMHSEDNAEQLVLRIRVVDNDPEKEA--QGEEEIFLKNLASQMLAEI 1445
Query: 1498 TLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVR 1557
L+GI+ I KVY+ Q D+K R I +G+++ +++W+LETDG++L +VL+ VD +R
Sbjct: 1446 DLKGIKGIKKVYIV--QQDNKTRRIDPVTGDWRTVSEWVLETDGSNLAEVLAVHGVDAIR 1503
Query: 1558 TFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1617
T N+ EIF+V GIEA R S+ KE V++F G YVNYRHLALLCD+MT++G LMAITR
Sbjct: 1504 TSCNNPVEIFRVFGIEAARNSLLKETRAVIEFDGSYVNYRHLALLCDIMTSQGALMAITR 1563
Query: 1618 HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
HGINR + GALMRC+FEETV++L++AA+ + D +GV++N+++GQ+ MGTG FDL LD
Sbjct: 1564 HGINRTNQGALMRCTFEETVELLIEAASMGDIDDCKGVAQNVLLGQMAPMGTGAFDLNLD 1623
Query: 1678 AEKCKDGI 1685
+ KD I
Sbjct: 1624 LDMLKDTI 1631
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 52/72 (72%), Gaps = 7/72 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ KI+A FG D+ + ++DNAE+LVLRIR++++D E++A + E+++FL+ + +
Sbjct: 1387 VASKISAMFGQDIFVMHSEDNAEQLVLRIRVVDND-----PEKEA--QGEEEIFLKNLAS 1439
Query: 64 NMLSDMTLQFIR 75
ML+++ L+ I+
Sbjct: 1440 QMLAEIDLKGIK 1451
>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
CM01]
Length = 1757
Score = 220 bits (561), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 164/251 (65%), Gaps = 25/251 (9%)
Query: 1446 CIEANMLSDMTLQF-----------IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANML 1494
CI+ +D+ + F IR + DD K +ED K+EDD+ L+ +EA++L
Sbjct: 1227 CIKEEYATDLAIIFSDNNADEQVIRIRTIRRDDGK---DEDPDTKIEDDVMLKRLEAHLL 1283
Query: 1495 SDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD------WLLETDGTSLMKVL 1548
MTL+G+ + + ++ R+I E G A+ D W L+T G++L +VL
Sbjct: 1284 DTMTLRGVPGVERAFL-----SKGTRLIEDEDGSELALIDNPKCTQWFLDTSGSALREVL 1338
Query: 1549 SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTA 1608
+ VDP RT+SND+ +I +V G+EAVR ++ KE++ VL F G YVN+RH+ALLCD+MT
Sbjct: 1339 AVPGVDPRRTYSNDLYQITEVFGVEAVRSALIKELSNVLSFDGSYVNHRHIALLCDIMTY 1398
Query: 1609 KGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMG 1668
+G + A+TRHGINR DTGALMRCSFEETV++L++AAA E D RG+SEN+++GQL MG
Sbjct: 1399 RGVISAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMG 1458
Query: 1669 TGCFDLLLDAE 1679
TG FD+ LD +
Sbjct: 1459 TGNFDVYLDPK 1469
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 7/83 (8%)
Query: 12 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 71
+ DL IF+D+NA++ V+RIR + DD K +ED K+EDD+ L+ +EA++L MTL
Sbjct: 1232 YATDLAIIFSDNNADEQVIRIRTIRRDDGK---DEDPDTKIEDDVMLKRLEAHLLDTMTL 1288
Query: 72 QFI----RIMNSDDSKMQDEEDA 90
+ + R S +++ ++ED
Sbjct: 1289 RGVPGVERAFLSKGTRLIEDEDG 1311
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 220 bits (561), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 191/330 (57%), Gaps = 47/330 (14%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNS+ K E + ED++FL+ +EA +L+ + L+GI I KV++ ++
Sbjct: 1242 IRIMNSELEK----EQGASQTEDEVFLKRLEAQLLNSLALRGIPDIKKVFIR----EANT 1293
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ E+ + ++W+L+T+G +L++V++ DVD RT SN + E+ QVLGIEAVR ++
Sbjct: 1294 MGLDPETETYAKKSEWMLDTEGVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRNAL 1353
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V++F G YVNYRHLA+L +VMT +GHLM+ITRHGINR +TG LMRCSFEETVD+
Sbjct: 1354 LKELRGVIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDI 1413
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT------GM 1693
LM+AAA AE D M G+SENI++GQ +GTG F L L+ + K+ +++ L T G
Sbjct: 1414 LMEAAAFAERDRMSGLSENIMLGQFCPLGTGEFGLHLNEDVLKEAVDLDLTTHSADALGA 1473
Query: 1694 MGGPA-GMFFG--SAATPS--------------SMIHNPL----------------QTPH 1720
PA G G +A+PS +M +P T
Sbjct: 1474 GTTPARGTTPGGVGSASPSFLLSPQAHASPFDDTMRFSPYTEGGGGGGGGDGMGFSPTSP 1533
Query: 1721 NTSLTNATHQSRDKAFAPSELFLSPDSRYP 1750
S T+ + A++P+ SP S P
Sbjct: 1534 GYSPTSPAYSPTSPAYSPTSPAYSPTSPAP 1563
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 4/71 (5%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++E+IN F DDL+CIFNDDN+EKL++RIRIMNS+ K E + ED++FL+ +EA
Sbjct: 1214 VAERINEDFQDDLSCIFNDDNSEKLIVRIRIMNSELEK----EQGASQTEDEVFLKRLEA 1269
Query: 64 NMLSDMTLQFI 74
+L+ + L+ I
Sbjct: 1270 QLLNSLALRGI 1280
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 220 bits (560), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/234 (48%), Positives = 156/234 (66%), Gaps = 14/234 (5%)
Query: 1462 IMNSDDSKMQDEEDA--------VDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1513
I +S + +DE+DA ++ +D+FLR +E+ +LS++TL GI I KV+
Sbjct: 1209 ISDSTKPRFEDEQDADRVAAEMEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVF---- 1264
Query: 1514 QTDSKKRIII-TESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1572
T +I+I + +G F +WLLETDG + + V+ DVD RT SNDI E F+VLGI
Sbjct: 1265 -TRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGI 1323
Query: 1573 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1632
EAVR ++ E+ TV+ F G YVNYRHL++L DVMT +GHLMAI+RHGINR + ALM+CS
Sbjct: 1324 EAVRATLLNEIRTVISFDGAYVNYRHLSVLVDVMTFRGHLMAISRHGINRVSSSALMKCS 1383
Query: 1633 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE 1686
FEET D+L+DAA H E D + GVSE+I++GQL +GTG F L L+ D +E
Sbjct: 1384 FEETSDILLDAAMHGETDTLTGVSESIMLGQLAPLGTGSFGLFLNDAALTDAVE 1437
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 18/92 (19%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIR----------IMNSDDSKMQDEEDA-- 48
M I +I+A FG DL+ + ++DNA +LV+R+R I +S + +DE+DA
Sbjct: 1166 MNTIKNRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADR 1225
Query: 49 ------VDKMEDDMFLRCIEANMLSDMTLQFI 74
++ +D+FLR +E+ +LS++TL I
Sbjct: 1226 VAAEMEDEEDAEDLFLRKVESQLLSNLTLSGI 1257
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 219 bits (559), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 146/202 (72%), Gaps = 4/202 (1%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+D FL+ + L+ +TL+GI I KVYM + + + + G+F+ +W+L+TDG
Sbjct: 1292 EDRFLQKLMVQCLAGITLRGITNISKVYMR----EEARTVYNVQLGKFERTNNWVLDTDG 1347
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L VL VD RT SND+ EIF VLGIEAVR+++ +E+ V+ F G YVNYRHLA+
Sbjct: 1348 CNLEDVLPIPMVDHARTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHLAI 1407
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCD MT KG+LM+ITRHGINR D G LM+CSFEETV++LM+AA AEAD ++GV+ENI+M
Sbjct: 1408 LCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETVEILMEAAVFAEADHLKGVTENIMM 1467
Query: 1662 GQLPRMGTGCFDLLLDAEKCKD 1683
GQL +GTG FD+L+D EK KD
Sbjct: 1468 GQLCPLGTGYFDVLIDEEKLKD 1489
Score = 43.1 bits (100), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 1 MEAISEKINAGFGDD-LNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKME-DDMFL 58
M+ I EKI A F ++ L+CI+ DDN++ LVLRIRI + +E++ D E +D FL
Sbjct: 1237 MKEIGEKIYAEFPNEELDCIWTDDNSDDLVLRIRIKHQPGVGEGEEKEEDDVSEAEDRFL 1296
Query: 59 RCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 101
+ + L+ +TL+ I N M++E V ++ F R
Sbjct: 1297 QKLMVQCLAGITLR--GITNISKVYMREEARTVYNVQLGKFER 1337
>gi|83317456|ref|XP_731168.1| RNA polymerase A/beta'/A'' subunit [Plasmodium yoelii yoelii 17XNL]
gi|23491122|gb|EAA22733.1| RNA polymerase A/beta'/A'' subunit, putative [Plasmodium yoelii
yoelii]
Length = 2312
Score = 219 bits (559), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 157/221 (71%), Gaps = 9/221 (4%)
Query: 1463 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII 1522
+N++++ M +ED +D FL+ + LS + L+G+E I KVYM + K
Sbjct: 1738 LNNENNTMISKEDT-----EDTFLKKLMEECLSSLKLRGVENITKVYMR----EESKITY 1788
Query: 1523 ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKE 1582
+E+G+F + W+L+TDG +L + VD +T SNDI EIF+VLGIEAVR+++ KE
Sbjct: 1789 DSENGKFVRSSHWVLDTDGCNLESIFCAPSVDFKKTISNDIVEIFEVLGIEAVRRALLKE 1848
Query: 1583 MNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMD 1642
+ TV+ F YVNYRHL++LCDVMT KG+LM+ITRHGINR D G L++CSFEETV++L++
Sbjct: 1849 LRTVISFDSSYVNYRHLSILCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLE 1908
Query: 1643 AAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
AAA A+ D +RG++ENI++GQL ++GTG FD+++D +K D
Sbjct: 1909 AAAFAQVDNLRGITENIMLGQLCKIGTGVFDIIIDNQKLND 1949
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 219 bits (558), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 158/228 (69%), Gaps = 15/228 (6%)
Query: 1471 QDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSKKRIIITESGE 1528
+DEED + ++E+D+FLR +E ML ++L+G+ I +V++ H +I +T +G
Sbjct: 1257 KDEED-LGQVEEDIFLRQLENTMLGQVSLRGVPGIQRVFLLEH-------DKISVTAAGN 1308
Query: 1529 FKAIAD--WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTV 1586
+A D W+LETDG +L V+ VD RT+SN+ EIF VLGIEA R ++ +E+ V
Sbjct: 1309 IEARGDKEWVLETDGVNLKTVMCIDGVDFKRTYSNNCVEIFDVLGIEAARAAIMRELRNV 1368
Query: 1587 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1646
++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEETV++LM+AAA
Sbjct: 1369 IEFDGSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAV 1428
Query: 1647 AEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI---EIPLAT 1691
E D G++ENI+ GQ+ MGTG FD+ LD + KD I +P+ T
Sbjct: 1429 GEKDDCHGIAENILFGQMAPMGTGAFDVALDIDMLKDVIVDHRLPVQT 1476
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ ++ F DL I+++DN+EKLV+R R++ D +DEED + ++E+D+FLR
Sbjct: 1218 MAYVASRVAENFKTDLFVIWSEDNSEKLVIRCRVLGGMD---KDEED-LGQVEEDIFLRQ 1273
Query: 61 IEANMLSDMTLQFI 74
+E ML ++L+ +
Sbjct: 1274 LENTMLGQVSLRGV 1287
>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM 1558]
Length = 1808
Score = 219 bits (558), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 158/235 (67%), Gaps = 14/235 (5%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D+FL+ IE +L + L GI I +V++ K+ ++++ GE+ +W LETD
Sbjct: 1272 EEDIFLKKIEGTLLDHVELGGITGIQRVFI-----SEGKQTVLSQQGEYDQEREWFLETD 1326
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L +VL+ VD VRT+SN+ E++Q LGIEA R ++ KE+N V++ G YVNYRHLA
Sbjct: 1327 GINLKEVLAVDGVDAVRTYSNNCYEVYQTLGIEAGRNALFKELNGVIEMGGSYVNYRHLA 1386
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LLCD+M +KG LM+ITRHGINR D GAL R SFEETV++L++AAA + D GV+EN++
Sbjct: 1387 LLCDLMCSKGQLMSITRHGINRTDAGALSRASFEETVEILLEAAAVGDVDDCHGVAENVL 1446
Query: 1661 MGQLPRMGTGCFDLLLDAEKCKDGI---EIPL----ATGMMGGPAGMFFGSAATP 1708
+GQ+ MGTG FD+ LD E KD I +P+ A G++ G GM G A TP
Sbjct: 1447 LGQIAPMGTGAFDVSLDLEMLKDVIVDHRLPVQNMMAAGVLSG--GMTPGGAMTP 1499
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 219 bits (558), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 167/226 (73%), Gaps = 9/226 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++++D E++A + E+++FL+ + + ML+++ L+GI+ I KVY+ Q D+K
Sbjct: 1252 IRVVDNDP-----EKEA--QGEEEIFLKNLASQMLAEIDLKGIKGIRKVYIV--QQDNKT 1302
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R + +G+++ +++W+LETDG++L +VL+ VD +RT N+ E+F+V GIEA R S+
Sbjct: 1303 RRVDPITGDWRTVSEWVLETDGSNLAEVLAVEGVDAIRTSCNNPVEVFRVFGIEAARNSL 1362
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
+E V++F G YVNYRHLALLCD+MT++G LMAITRHGINR + GALMRC+FEETV++
Sbjct: 1363 LRETRAVIEFDGSYVNYRHLALLCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVEL 1422
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1685
L++AA+ + D +GV++N+++GQ+ MGTG FDL LD E KD I
Sbjct: 1423 LIEAASMGDVDDCKGVAQNVLLGQMAPMGTGAFDLNLDLEMLKDTI 1468
Score = 47.4 bits (111), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 51/72 (70%), Gaps = 7/72 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ KI+A FG D+ + ++DNAE L+LRIR++++D E++A + E+++FL+ + +
Sbjct: 1224 VASKISAMFGQDIFVMHSEDNAENLILRIRVVDND-----PEKEA--QGEEEIFLKNLAS 1276
Query: 64 NMLSDMTLQFIR 75
ML+++ L+ I+
Sbjct: 1277 QMLAEIDLKGIK 1288
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 167/226 (73%), Gaps = 9/226 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++++D E++A + E+++FL+ + + ML+++ L+GI+ I KVY+ Q D+K
Sbjct: 1253 IRVVDNDP-----EKEA--QGEEEIFLKNLASQMLAEIDLKGIKGIKKVYIV--QQDNKT 1303
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R I +G+++ +++W+LETDG++L +VL+ VD +RT N+ E+F+V GIEA R S+
Sbjct: 1304 RRIDPVTGDWRTVSEWVLETDGSNLTEVLAVEGVDAIRTSCNNPVEVFRVFGIEAARNSL 1363
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE V++F G YVNYRHLALLCD+MT++G LMAITRHGINR + GALMRC+FEETV++
Sbjct: 1364 LKETRAVIEFDGSYVNYRHLALLCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVEL 1423
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1685
L++AA+ + D +GV++N+++GQ+ MGTG FDL LD + KD I
Sbjct: 1424 LIEAASMGDIDDCKGVAQNVLLGQMAPMGTGAFDLNLDLDMLKDTI 1469
Score = 47.4 bits (111), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 51/72 (70%), Gaps = 7/72 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ KI+A FG D+ + ++DNAE L+LRIR++++D E++A + E+++FL+ + +
Sbjct: 1225 VASKISAMFGQDIFVMHSEDNAENLILRIRVVDND-----PEKEA--QGEEEIFLKNLAS 1277
Query: 64 NMLSDMTLQFIR 75
ML+++ L+ I+
Sbjct: 1278 QMLAEIDLKGIK 1289
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 218 bits (556), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 169/252 (67%), Gaps = 13/252 (5%)
Query: 1436 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1495
D + D+F+ E N S+ + R++ S D +D+E +E+D+FLR +E ML+
Sbjct: 1225 DSFKTDLFVIWSEDN--SEKLIIRCRVLGSPD---KDDE-GYGSVEEDIFLRQLENTMLN 1278
Query: 1496 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD--WLLETDGTSLMKVLSERDV 1553
++L+G++ I +V++ T++ K ++I G + D W+LETDG +L V+ V
Sbjct: 1279 SVSLRGVKGINRVFL----TEADK-VMIRPDGTIETGKDKEWVLETDGVNLKTVMCIDGV 1333
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D RT+SN EIF VLGIEA R ++ KE+ +V++F G YVNYRHLALLCD+MT +G LM
Sbjct: 1334 DFTRTYSNSCVEIFNVLGIEAARAAIMKELRSVIEFDGSYVNYRHLALLCDLMTHRGSLM 1393
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
AITRHGINR DTGALMRCSFEETV+VLM+AAA E D G++EN++ GQ+ MGTG F+
Sbjct: 1394 AITRHGINRADTGALMRCSFEETVEVLMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFE 1453
Query: 1674 LLLDAEKCKDGI 1685
+ LD + KD I
Sbjct: 1454 VALDIDMLKDAI 1465
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M+ ++ +I F DL I+++DN+EKL++R R++ S D +D+E +E+D+FLR
Sbjct: 1216 MQYVANRIGDSFKTDLFVIWSEDNSEKLIIRCRVLGSPD---KDDE-GYGSVEEDIFLRQ 1271
Query: 61 IEANMLSDMTLQFIRIMN 78
+E ML+ ++L+ ++ +N
Sbjct: 1272 LENTMLNSVSLRGVKGIN 1289
>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1590
Score = 218 bits (556), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 194/359 (54%), Gaps = 69/359 (19%)
Query: 1453 SDMTLQFIRIMNSDDSKMQDEEDAVD-------KMEDD-------MFLRCIEANMLSDMT 1498
+D + +RI D K +D + A D K+E++ FLR +E+NML+++
Sbjct: 1198 ADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEEDIENSTVEFLRRLESNMLNELA 1257
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+G + + KV++ + + KK + + SG + W+L+T+G +L+ VLS VD T
Sbjct: 1258 LKGYKDLKKVFLR--EENDKK--VFSSSG-VATVKQWVLDTEGCNLLAVLSHPYVDHTIT 1312
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
SND+ EI VLGIEA R ++ +EM V++F G YVNYRHLA+LCDVMT +G LMAITR
Sbjct: 1313 TSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRR 1372
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1678
GINR DTG LMRCSFEETV++L++AA A+ D ++GVS N+++GQL +GTGCF L LD
Sbjct: 1373 GINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGTGCFGLYLDE 1432
Query: 1679 EKCKDGIEI-P-----------------------LATGMMGGPAGMFFGSAATP------ 1708
E K + + P LAT GG A + G A++P
Sbjct: 1433 ELLKQAVAVKPSFVTETKSMYGSLGATTPYHTSGLATPYHGGVATPYHGGASSPWTQGAM 1492
Query: 1709 ---------------SSMIHNPLQTPHNTSLTNATHQ-----SRDKAFAPSELFLSPDS 1747
S +N +P +S T+ HQ S ++P+ SP S
Sbjct: 1493 TPLGRTPSPEYQGGFSPSPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPAYSPSS 1551
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVD-------KME 53
M +++KI F +D+ C ++DDNA+KL+L +RI D K +D + A D K+E
Sbjct: 1174 MAQVAKKIQEEFQNDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLE 1233
Query: 54 DD-------MFLRCIEANMLSDMTLQ 72
++ FLR +E+NML+++ L+
Sbjct: 1234 EEDIENSTVEFLRRLESNMLNELALK 1259
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 218 bits (556), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 169/252 (67%), Gaps = 13/252 (5%)
Query: 1436 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1495
D + D+F+ E N S+ + R++ S D +D+E +E+D+FLR +E ML+
Sbjct: 1225 DSFKTDLFVIWSEDN--SEKLIIRCRVLGSPD---KDDE-GYGSVEEDIFLRQLENTMLN 1278
Query: 1496 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD--WLLETDGTSLMKVLSERDV 1553
++L+G++ I +V++ T++ K ++I G + D W+LETDG +L V+ V
Sbjct: 1279 SVSLRGVKGINRVFL----TEADK-VMIRPDGTIETGKDKEWVLETDGVNLKTVMCIDGV 1333
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D RT+SN EIF VLGIEA R ++ KE+ +V++F G YVNYRHLALLCD+MT +G LM
Sbjct: 1334 DFTRTYSNSCVEIFNVLGIEAARAAIMKELRSVIEFDGSYVNYRHLALLCDLMTHRGSLM 1393
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
AITRHGINR DTGALMRCSFEETV+VLM+AAA E D G++EN++ GQ+ MGTG F+
Sbjct: 1394 AITRHGINRADTGALMRCSFEETVEVLMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFE 1453
Query: 1674 LLLDAEKCKDGI 1685
+ LD + KD I
Sbjct: 1454 VALDIDMLKDAI 1465
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M+ ++ +I F DL I+++DN+EKL++R R++ S D +D+E +E+D+FLR
Sbjct: 1216 MQYVANRIGDSFKTDLFVIWSEDNSEKLIIRCRVLGSPD---KDDE-GYGSVEEDIFLRQ 1271
Query: 61 IEANMLSDMTLQFIRIMN 78
+E ML+ ++L+ ++ +N
Sbjct: 1272 LENTMLNSVSLRGVKGIN 1289
>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
RN66]
gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
[Cryptosporidium muris RN66]
Length = 1927
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 152/229 (66%), Gaps = 16/229 (6%)
Query: 1462 IMNS----DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+MNS DD Q V +E+ FL + LS +TL+GI I KVYM + +
Sbjct: 1307 VMNSEFQIDDGHYQPPTPPV--VEEHKFLEKLMTECLSQITLRGISNIKKVYM---KEEQ 1361
Query: 1518 KKRI-IITESGEFKAIAD--WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1574
R I+++ K + D W+L+TDG +L VL +D RT SNDI E+F VLGIEA
Sbjct: 1362 VTRYDILSQ----KIVRDNQWVLDTDGCNLEAVLCHEAIDSTRTISNDITEVFSVLGIEA 1417
Query: 1575 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1634
VR+++ KE+ TV+ F G YVNYRHLALLCD MT KGHLM+ITRHG+NR D G L +CSFE
Sbjct: 1418 VRRALLKELRTVISFDGSYVNYRHLALLCDNMTQKGHLMSITRHGMNRVDRGPLQKCSFE 1477
Query: 1635 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
ETV++LMDAA E D + GVSEN+++GQL GT CFDLL+D++K +D
Sbjct: 1478 ETVEILMDAAMFGETDYLNGVSENVMVGQLSPYGTACFDLLVDSDKLRD 1526
>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1627
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/225 (51%), Positives = 154/225 (68%), Gaps = 4/225 (1%)
Query: 1457 LQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1516
L ++ M+ D + + ++D EDD+FL+ +E NML + L+G++ + KV+M +
Sbjct: 1264 LPMVQGMDEDGNPIMTDDDVELGQEDDVFLKRLEKNMLHTLKLRGVDDVKKVFM---RGG 1320
Query: 1517 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
+KK + E G F +W+LETDGT+LM VL VD RT SNDI E+F VLGIE VR
Sbjct: 1321 AKKTVWDDEKG-FGITDEWVLETDGTNLMSVLGIDYVDATRTISNDIVEVFMVLGIEGVR 1379
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
++ E+ V+ F G YVNYRHLA L DVMT GHLMA+ RHGINR ++G L+RCSFEET
Sbjct: 1380 AAILSELRNVISFDGSYVNYRHLACLVDVMTMHGHLMAVDRHGINRVESGPLLRCSFEET 1439
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1681
VD+L DAA AE + +RGV+ENI+MGQL R+GTG DLLLD +K
Sbjct: 1440 VDMLNDAACFAEEEVLRGVTENIMMGQLARVGTGDMDLLLDEQKV 1484
Score = 48.5 bits (114), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN---------SDDSKMQDEEDAVDK 51
M I+ +I +G DLN + +DDNA+ LV RIRI+N D + + ++D
Sbjct: 1227 MNEIAAEIANEYGSDLNVLVSDDNADDLVARIRIVNDLPMVQGMDEDGNPIMTDDDVELG 1286
Query: 52 MEDDMFLRCIEANMLSDMTLQFI 74
EDD+FL+ +E NML + L+ +
Sbjct: 1287 QEDDVFLKRLEKNMLHTLKLRGV 1309
>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
Length = 1756
Score = 218 bits (555), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/228 (47%), Positives = 155/228 (67%), Gaps = 12/228 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI K++DEE ++ +EDD+ L+ +E+++L +TL+G+ + + ++
Sbjct: 1253 QVIRIRTVGSDKVKDEEGNMN-IEDDVMLKRLESHILDTLTLRGVRGVERAFL-----TK 1306
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
R++I + G A D W L+T G+SL +VLS VDP RT++ND+ +I +V G
Sbjct: 1307 GTRLVIDDDGSELAKKDDEKCTQWYLDTSGSSLREVLSVNGVDPTRTYTNDLWQIVEVFG 1366
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRC
Sbjct: 1367 IEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGIISAVTRHGINRADTGALMRC 1426
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
SFEETV++L++AAA E D RG+SENI++GQL MGTG FD+ LD +
Sbjct: 1427 SFEETVEILLEAAASGELDDCRGISENIMLGQLAPMGTGSFDVYLDPK 1474
Score = 51.2 bits (121), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I F DL I++D+NA++ V+RIR + SD K++DEE ++ +EDD+ L+ +E+
Sbjct: 1229 VAQRIKEEFKHDLAIIYSDNNADEQVIRIRTVGSD--KVKDEEGNMN-IEDDVMLKRLES 1285
Query: 64 NMLSDMTLQFIR 75
++L +TL+ +R
Sbjct: 1286 HILDTLTLRGVR 1297
>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1759
Score = 218 bits (555), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 157/231 (67%), Gaps = 18/231 (7%)
Query: 1458 QFIRIMN---SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1514
Q IRI SDD +ED+ K+EDD+ L+ +EA++L MTL+G+ I + ++
Sbjct: 1248 QVIRIRTIRQSDD----KDEDSDTKIEDDVMLKRLEAHLLDTMTLRGVPGIERAFL---- 1299
Query: 1515 TDSKKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQ 1568
R++ E G A+ D W L+T G++L +VL+ VDP RT+SND+ +I +
Sbjct: 1300 -TKGTRLVEDEDGSELALKDNPKCTQWYLDTSGSALREVLAVPGVDPTRTYSNDLYQITE 1358
Query: 1569 VLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 1628
V G+EAVR ++ KE+ VL F G YVN+RH+ALLCD+MT +G + A+TRHGINR DTGAL
Sbjct: 1359 VFGVEAVRSALVKELTNVLAFDGSYVNHRHIALLCDIMTYRGVISAVTRHGINRADTGAL 1418
Query: 1629 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
MRCSFEETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1419 MRCSFEETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDVYLDPK 1469
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 7/83 (8%)
Query: 12 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 71
+ +DL IF+D+NA++ V+RIR + D K +ED+ K+EDD+ L+ +EA++L MTL
Sbjct: 1232 YSNDLAIIFSDNNADEQVIRIRTIRQSDDK---DEDSDTKIEDDVMLKRLEAHLLDTMTL 1288
Query: 72 QFI----RIMNSDDSKMQDEEDA 90
+ + R + +++ ++ED
Sbjct: 1289 RGVPGIERAFLTKGTRLVEDEDG 1311
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 218 bits (554), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/197 (53%), Positives = 145/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IE++ML ++L+GI I +V+M + +S IT GEFK +W+LETD
Sbjct: 1262 EEDQILKRIESHMLESISLRGIPGITRVFMMQHKVNSPD---IT--GEFKQSQEWVLETD 1316
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SN+ E+ VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 1317 GVNLADVMAVSGVDSSRTYSNNFIEVLSVLGIEATRTALFKEILNVIAFDGSYVNYRHMA 1376
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L++A + AE D RG+SEN++
Sbjct: 1377 LLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILLEAGSAAELDDCRGISENVM 1436
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FD+++D
Sbjct: 1437 LGQMAPLGTGAFDVMVD 1453
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D + ++ DA E+D L+
Sbjct: 1215 MSQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EEDQILKR 1269
Query: 61 IEANMLSDMTLQFI 74
IE++ML ++L+ I
Sbjct: 1270 IESHMLESISLRGI 1283
>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
equi]
Length = 1733
Score = 218 bits (554), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 156/224 (69%), Gaps = 10/224 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
I+ MN ++ EE AV + E + FL+ +LS++ L+GI I KVYM + ++K
Sbjct: 1257 IKYMN-----VEGEELAVREDEGE-FLQRFMTQLLSNIKLRGIPQISKVYM---REEAKT 1307
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ T +G F+ ++ W+L+TDG +L VL VD VRT SND+ EIF V GIEA R+++
Sbjct: 1308 KYNET-NGRFERVSQWVLDTDGCNLEDVLPIPSVDYVRTISNDVSEIFHVFGIEAARRAL 1366
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
+E+ V+ F G YVNYRHL+LLCDVMT KGH+M+ITRHG+NR D G L++CSFEET++
Sbjct: 1367 LRELRAVISFDGSYVNYRHLSLLCDVMTQKGHIMSITRHGLNRTDRGPLVKCSFEETLET 1426
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
L+DA+ E D ++G++EN+IMGQL GTGCFD+++D K +D
Sbjct: 1427 LLDASIFGEVDQLKGITENVIMGQLCPYGTGCFDIMIDEAKLRD 1470
Score = 41.2 bits (95), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 9/77 (11%)
Query: 1 MEAISEKINAGFGDD-LNCIFNDDNAEKLVLRIRI--MNSDDSKMQDEEDAVDKMEDDMF 57
M+ I ++I F +D ++CI+ DDN+E+LVLRIRI MN ++ EE AV + E + F
Sbjct: 1223 MKEIGDQIYKEFSNDEIDCIYTDDNSEELVLRIRIKYMN-----VEGEELAVREDEGE-F 1276
Query: 58 LRCIEANMLSDMTLQFI 74
L+ +LS++ L+ I
Sbjct: 1277 LQRFMTQLLSNIKLRGI 1293
>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
Length = 1750
Score = 218 bits (554), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/205 (54%), Positives = 149/205 (72%), Gaps = 6/205 (2%)
Query: 1473 EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAI 1532
EED VD ED M R IE +ML ++L+GIE I +V+M + K + +G++K
Sbjct: 1254 EED-VDAEEDQMLKR-IEGHMLDSISLRGIEGIDRVFM----MEHKMSVPDEVTGDYKTK 1307
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+W+LETDG +L +V++ VDP RT+SN E+ VLGIEA R ++ +E+ V+ F G
Sbjct: 1308 MEWVLETDGINLAEVMAVDGVDPYRTYSNSFVEVLSVLGIEATRSALYREILNVIAFDGS 1367
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
YVNYRH+ALL DVMT++G+LMAITRHGINR DTGALMRCSFEETV++L++AAA AE D
Sbjct: 1368 YVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILLEAAAVAELDDC 1427
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLD 1677
RGVSENI++GQL +GTG F ++LD
Sbjct: 1428 RGVSENIMLGQLAPLGTGNFGVMLD 1452
Score = 48.5 bits (114), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 51/74 (68%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M +++KI++ +G+DL ++++DNA+KL++R R++ D ++++ DA E+D L+
Sbjct: 1213 MSQVAQKISSSYGEDLFVMWSEDNADKLIIRCRVVR-DPKTLEEDVDA----EEDQMLKR 1267
Query: 61 IEANMLSDMTLQFI 74
IE +ML ++L+ I
Sbjct: 1268 IEGHMLDSISLRGI 1281
>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
206040]
Length = 1756
Score = 218 bits (554), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + + D K D E K+EDD+ L+ +EA++L +TL+G+ + K ++
Sbjct: 1252 IRTIRAGDEKNDDGEK---KIEDDVMLKRLEAHLLDTLTLRGVPGVEKAFL-----TKGT 1303
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R++ G A+ D W L+T G++L +VL+ VDP+RT++ND+ ++ +V GIE
Sbjct: 1304 RLVEAADGSELALKDDPRCTQWYLDTSGSALREVLAVPGVDPIRTYTNDLWQVVEVFGIE 1363
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
R ++ KE+ VL F G YVN+RH+ALLCDVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1364 GARAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRCSF 1423
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+ LD +
Sbjct: 1424 EETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGHFDVFLDPK 1469
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + +DL IF+D+NA++ V+RIR + + D K D E K+EDD+ L+ +EA
Sbjct: 1224 VAQRIKEEYPNDLAVIFSDNNADEQVIRIRTIRAGDEKNDDGE---KKIEDDVMLKRLEA 1280
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1281 HLLDTLTLRGV 1291
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
hirsutum FP-91666 SS1]
Length = 1703
Score = 217 bits (553), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 155/227 (68%), Gaps = 15/227 (6%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSK 1518
R++ D +DEE D +E+D+FLR +E ML+ ++L+G++ I +V+M H
Sbjct: 1255 RVLGGADK--EDEE--TDSIEEDIFLRQLENTMLNSVSLRGVKGIERVFMLEH------- 1303
Query: 1519 KRIIITESGEF--KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
+++ E G + + +W+LETDG +L V+ VD RT+SN EIF VLGIEA R
Sbjct: 1304 DKVVTDEKGNITGQGVKEWVLETDGVNLKAVMCMDGVDFTRTYSNSCVEIFNVLGIEAAR 1363
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
++ KE+ V++F G YVNYRHLALLCD+MT +GHLMAITRHGINR DTGALMR SFEET
Sbjct: 1364 AAIMKELRGVIEFDGSYVNYRHLALLCDLMTQRGHLMAITRHGINRADTGALMRSSFEET 1423
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
V++LM+AAA E D G++EN++ GQ+ MGTG F++ LD + KD
Sbjct: 1424 VEILMEAAAVGERDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKD 1470
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M+ ++ +I F DL I+++DN+EKLV+R R++ D +DEE D +E+D+FLR
Sbjct: 1223 MQFVANRIAESFKTDLFVIWSEDNSEKLVIRCRVLGGADK--EDEE--TDSIEEDIFLRQ 1278
Query: 61 IEANMLSDMTLQFIR 75
+E ML+ ++L+ ++
Sbjct: 1279 LENTMLNSVSLRGVK 1293
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 217 bits (553), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 160/250 (64%), Gaps = 23/250 (9%)
Query: 1436 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1495
D ED M +RC R+++ ++ ED ++ +E+D+FLR +E ML+
Sbjct: 1248 DASEDTMIIRC--------------RVVSGEE----KTEDGLEDIEEDVFLRQLENTMLN 1289
Query: 1496 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDP 1555
+ L+G++ I +V++ K + I + G +W+LET+GT+L V+ VD
Sbjct: 1290 SIVLRGVKGIDRVFL-----SEKDKTHINDDGTVGQEKEWVLETNGTNLKAVMCVDGVDY 1344
Query: 1556 VRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
RT SN+ E+F LGIEA R+SV KE+ + ++F G YVNYRH+ALLCD+MT +G LMAI
Sbjct: 1345 TRTSSNNCVEVFNTLGIEAGRQSVLKELKSCIEFDGSYVNYRHIALLCDLMTQRGTLMAI 1404
Query: 1616 TRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
TRHGINR DTGALMRCSFEETV++LM+AAA E D GV+EN++ GQ+ MGTG FD+
Sbjct: 1405 TRHGINRSDTGALMRCSFEETVEILMEAAAVGEKDDCHGVAENVMFGQMAPMGTGAFDVA 1464
Query: 1676 LDAEKCKDGI 1685
LD KD I
Sbjct: 1465 LDINMLKDAI 1474
>gi|219127092|ref|XP_002183777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405014|gb|EEC44959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1706
Score = 217 bits (552), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 110/200 (55%), Positives = 142/200 (71%), Gaps = 4/200 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
EDD+FL+ +E +MLS + L+G++ + KV+M KR + + F +W+LETD
Sbjct: 1225 EDDIFLKRLEKSMLSSLKLRGVDHVKKVFMR----GGAKRTVWDDVKGFGVRDEWVLETD 1280
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
GT+LM VL VD R+ SNDI E+F LGIE VR ++ E+ V+ F G YVNYRHLA
Sbjct: 1281 GTNLMAVLGVDYVDGTRSVSNDIVEVFVALGIEGVRGALLSELRNVISFDGSYVNYRHLA 1340
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
L DVMT +GHLMAI RHGINR DTG L+R SFEETVD+LMDAA +AE + ++GV+ENI+
Sbjct: 1341 CLVDVMTMQGHLMAIDRHGINRVDTGPLLRASFEETVDMLMDAAVYAEEEILKGVTENIM 1400
Query: 1661 MGQLPRMGTGCFDLLLDAEK 1680
MGQL R+GTG DLLLD +K
Sbjct: 1401 MGQLARVGTGDVDLLLDEDK 1420
Score = 50.4 bits (119), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 10/83 (12%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN---------SDDSKMQDEEDAVDK 51
ME I+++I +G DLN DDNA+++V+RIRI+N + + D++ V +
Sbjct: 1165 MEEIAKEIGEEYGADLNVEVTDDNADEMVVRIRIVNDTPFNSGQTDEGGNLMDDQPEVGQ 1224
Query: 52 MEDDMFLRCIEANMLSDMTLQFI 74
EDD+FL+ +E +MLS + L+ +
Sbjct: 1225 -EDDIFLKRLEKSMLSSLKLRGV 1246
>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1754
Score = 216 bits (551), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/259 (44%), Positives = 167/259 (64%), Gaps = 13/259 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI +ED KMEDD+ L+ +E ++L ++L+G++ I + ++ +
Sbjct: 1250 QVIRIRPMHAGNDDKDEDGEKKMEDDVMLKRLETHLLDTLSLRGVKGIERAFL-----NK 1304
Query: 1518 KKRIIITESGEFKAI------ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
+ ++I TE G A ++W L+T GT+L +VLS VD RT++N + ++ +V G
Sbjct: 1305 ETKLIETEDGALLAAKADERCSEWYLDTSGTALRQVLSVDGVDSTRTYTNHLWQVVEVFG 1364
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALLCDVMT +G + A+TRHGINR DTGALMRC
Sbjct: 1365 IEAARSALVRELTQVLAFDGSYVNHRHLALLCDVMTYRGTISAVTRHGINRADTGALMRC 1424
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L++AAA E D RG+SEN+++GQ+ MGTG F++LLD + + I
Sbjct: 1425 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEVLLDPKMLETVISDNSRM 1484
Query: 1692 GMMGG-PA-GMFFGSAATP 1708
G+M G P G G AATP
Sbjct: 1485 GLMPGMPVKGGEAGGAATP 1503
Score = 50.1 bits (118), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 60/96 (62%), Gaps = 8/96 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS-DDSKMQDEEDAVDKMEDDMFLR 59
+E ++ +I + +DL IF+D+NAE+ V+RIR M++ +D K +ED KMEDD+ L+
Sbjct: 1223 VEDVARRIKEEYPNDLAVIFSDNNAEEQVIRIRPMHAGNDDK---DEDGEKKMEDDVMLK 1279
Query: 60 CIEANMLSDMTLQFI----RIMNSDDSKMQDEEDAV 91
+E ++L ++L+ + R + ++K+ + ED
Sbjct: 1280 RLETHLLDTLSLRGVKGIERAFLNKETKLIETEDGA 1315
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 216 bits (551), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 135/198 (68%), Gaps = 5/198 (2%)
Query: 1483 DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGT 1542
D L+ +EA ML ++L+GI I +V+M + I E+G+F +W+LETDG
Sbjct: 1259 DGLLKALEAQMLESISLRGISGISRVFMM-----KYDKTYIDETGDFAKKEEWVLETDGV 1313
Query: 1543 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1602
+L VL+ VD RT+SN EI VLGIEA R ++ KE+ V+ F G YVNYRHLALL
Sbjct: 1314 NLADVLAVEGVDTTRTYSNSFVEILFVLGIEAARSALYKEILNVIAFDGSYVNYRHLALL 1373
Query: 1603 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1662
D+MT +GHL+AI+RHG NR DTGALMRCSFEETV++L DA A AE D GVS+N+I+G
Sbjct: 1374 VDLMTYRGHLVAISRHGFNRNDTGALMRCSFEETVEILFDAGASAELDTCEGVSQNVILG 1433
Query: 1663 QLPRMGTGCFDLLLDAEK 1680
QL GTG F++ LD EK
Sbjct: 1434 QLAPFGTGSFEVYLDEEK 1451
Score = 44.3 bits (103), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I FGDDL I+++DNAEKLV+R RI+ + + ++EE+ D + L+
Sbjct: 1210 MSQVAGQIMDNFGDDLFVIWSEDNAEKLVIRCRIVREEKALDEEEEETEDGL-----LKA 1264
Query: 61 IEANMLSDMTLQFI 74
+EA ML ++L+ I
Sbjct: 1265 LEAQMLESISLRGI 1278
>gi|124505021|ref|XP_001351252.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum 3D7]
gi|3758846|emb|CAB11131.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum 3D7]
Length = 2457
Score = 216 bits (550), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+D FL+ + LS + L+GIE I KVYM + K +++G+F + W+L+TDG
Sbjct: 1863 EDTFLKKLMEQCLSTLKLRGIENITKVYMR----EESKITYDSDNGKFVRSSHWVLDTDG 1918
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L + VD +T SNDI EIF+VLGIEAVR+++ KE+ TV+ F YVNYRHL++
Sbjct: 1919 CNLENIFCAPQVDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1978
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCDVMT KG+LM+ITRHGINR D G L++CSFEETV++L++AAA A+ D +RG++ENI++
Sbjct: 1979 LCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIML 2038
Query: 1662 GQLPRMGTGCFDLLLDAEKCKD 1683
GQL ++GTG FD+++D +K D
Sbjct: 2039 GQLCKIGTGSFDIIIDNQKLND 2060
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 216 bits (550), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 167/226 (73%), Gaps = 9/226 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++++D E++A + E+++FL+ + + ML+++ L+GI+ I KVY+ Q D+K
Sbjct: 1252 IRVVDNDP-----EKEA--QGEEEIFLKNLASQMLAEIDLKGIKGIKKVYIV--QQDNKT 1302
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R I +G+++ +++W+LETDG++L +VL+ VD +R+ N+ E+F+V GIEA R S+
Sbjct: 1303 RRIDPVTGDWRTVSEWVLETDGSNLAEVLAVEGVDAIRSSCNNPVEVFRVFGIEAARNSL 1362
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
+E V++F G YVNYRHLALLCD+MT++G LMAITRHGINR + GALMRC+FEETV++
Sbjct: 1363 LRETRAVIEFDGSYVNYRHLALLCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVEL 1422
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1685
L++AA+ + D +GV++N+++GQ+ MGTG FDL LD + KD I
Sbjct: 1423 LIEAASMGDIDDCKGVAQNVLLGQMAPMGTGAFDLNLDLDMLKDTI 1468
Score = 47.4 bits (111), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 51/72 (70%), Gaps = 7/72 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ KI+A FG D+ + ++DNAE L+LRIR++++D E++A + E+++FL+ + +
Sbjct: 1224 VASKISAMFGQDIFVMHSEDNAENLILRIRVVDND-----PEKEA--QGEEEIFLKNLAS 1276
Query: 64 NMLSDMTLQFIR 75
ML+++ L+ I+
Sbjct: 1277 QMLAEIDLKGIK 1288
>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
Length = 1757
Score = 216 bits (550), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1252 IRTIRQNDEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1303
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R++ + G A+ D W L+T G++L +VL+ VDP RT++ND+ ++ +V GIE
Sbjct: 1304 RLVESVDGSELALKDDIRCTQWYLDTSGSALREVLAVPGVDPTRTYTNDLWQVIEVFGIE 1363
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
R ++ KE+ VL F G YVN+RH+ALLCDVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1364 GTRAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRCSF 1423
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+ LD +
Sbjct: 1424 EETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGHFDVFLDPK 1469
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 65/106 (61%), Gaps = 10/106 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + +DL IF+D+NA++ V+RIR + +D K +ED K+EDD+ L+ +EA
Sbjct: 1224 VAQRIKEEYPNDLAVIFSDNNADEQVIRIRTIRQNDEK---DEDGEKKIEDDVMLKRLEA 1280
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVD-KMEDDMFLRCIE 104
++L +TL+ + R + +++ + D + ++DD +RC +
Sbjct: 1281 HLLDTLTLRGVPGVERAFLTKGTRLVESVDGSELALKDD--IRCTQ 1324
>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
Length = 1764
Score = 216 bits (550), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + SD Q +E+ K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRSDS---QKDEEGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+I+ E G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLIVDEDGSEMAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + SD Q +E+ K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAVIFSDNNADEQVIRIRTIRSDS---QKDEEGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 216 bits (550), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 166/251 (66%), Gaps = 22/251 (8%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
R++ S D +DE+ +D E+D+F R +E ML+ ++L+G+E I +V++ + +
Sbjct: 1251 RVVGSLD---KDEDSRMD--EEDVFYRQLENTMLNSVSLRGVEGISRVFLM-----KQDK 1300
Query: 1521 IIITESGEFKAIAD--WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
I+ G+ + + D W+LET G +L +++ VD +T SN E+F+VLG+EA R S
Sbjct: 1301 IVTRPDGKIENLKDSEWVLETTGVNLKTIMTVEGVDYSKTHSNSCTEVFKVLGVEAARAS 1360
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ KE+ +V++F G YVNYRHLALLCD+MT +G +MAITRHGINR DTGALMRCSFEETV+
Sbjct: 1361 LLKELRSVIEFDGSYVNYRHLALLCDLMTCRGSIMAITRHGINRADTGALMRCSFEETVE 1420
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI---EIPLA----- 1690
+LMDAAA E D G++EN++ GQ+ MGTG FD++LD E KD + +P+
Sbjct: 1421 ILMDAAAIGEKDDCHGIAENVLFGQMAPMGTGAFDVMLDMEMLKDVVVDSRVPMPDFGRL 1480
Query: 1691 --TGMMGGPAG 1699
GM G AG
Sbjct: 1481 IEGGMTPGGAG 1491
Score = 47.4 bits (111), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 69/128 (53%), Gaps = 23/128 (17%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I++DDN++KLV+R R++ S D +DE+ +D E+D+F R
Sbjct: 1219 MSYVASRIAENFMTDLFVIWSDDNSDKLVIRCRVVGSLD---KDEDSRMD--EEDVFYRQ 1273
Query: 61 IEANMLSDMTLQFI------------RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANML 108
+E ML+ ++L+ + +I+ D K+++ +D+ + L N+
Sbjct: 1274 LENTMLNSVSLRGVEGISRVFLMKQDKIVTRPDGKIENLKDS------EWVLETTGVNLK 1327
Query: 109 SDMTLQFI 116
+ MT++ +
Sbjct: 1328 TIMTVEGV 1335
>gi|133328|sp|P14248.1|RPB1_PLAFD RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|9943|emb|CAA34560.1| unnamed protein product [Plasmodium falciparum]
Length = 2452
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+D FL+ + LS + L+GIE I KVYM + K +++G+F + W+L+TDG
Sbjct: 1865 EDTFLKKLMEQCLSTLKLRGIENITKVYMR----EESKITYDSDNGKFVRSSHWVLDTDG 1920
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L + VD +T SNDI EIF+VLGIEAVR+++ KE+ TV+ F YVNYRHL++
Sbjct: 1921 CNLENIFCAPQVDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1980
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCDVMT KG+LM+ITRHGINR D G L++CSFEETV++L++AAA A+ D +RG++ENI++
Sbjct: 1981 LCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIML 2040
Query: 1662 GQLPRMGTGCFDLLLDAEKCKD 1683
GQL ++GTG FD+++D +K D
Sbjct: 2041 GQLCKIGTGSFDIIIDNQKLND 2062
>gi|240274624|gb|EER38140.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H143]
Length = 668
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI DSK ++D D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 179 QVIRIRQIQDSK---QDDDDDDTEYDVTLKKLESHLLDTLTLRGVAGIERAFI-----NE 230
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R+ + E G AD W+LET G++L +VL+ VD RT+SN EI +V G
Sbjct: 231 KSRVRVLEDGSLHQSADDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFIEILEVFG 290
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 291 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 350
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 351 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 396
>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
CQMa 102]
Length = 1746
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 153/228 (67%), Gaps = 12/228 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI S+ +DE D K+EDD+ L+ +EA++L +TL+G+ I + ++
Sbjct: 1246 QVIRIRTVRQSEEKDE-DGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFL-----TK 1299
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
R+ + E G AI D W L+T G++L VL+ VD RT++ND+ +I +V G
Sbjct: 1300 GTRLTVGEDGSELAIKDDPRCTQWYLDTSGSALRDVLAVDGVDASRTYTNDLWQIVEVFG 1359
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRC
Sbjct: 1360 IEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRC 1419
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
SFEETV++L++AAA E D RG+SEN+++GQL MGTG FD+LLD +
Sbjct: 1420 SFEETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDVLLDPK 1467
Score = 50.4 bits (119), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + +DL IF+D+NA++ V+RIR + + K +ED K+EDD+ L+ +EA
Sbjct: 1222 VAQRIKEEYPNDLAVIFSDNNADEQVIRIRTVRQSEEK---DEDGEKKIEDDVMLKRLEA 1278
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVD-KMEDDMFLRCIE 104
++L +TL+ + R + +++ ED + ++DD RC +
Sbjct: 1279 HLLDTLTLRGVPGIERAFLTKGTRLTVGEDGSELAIKDDP--RCTQ 1322
>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
Length = 1755
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 153/230 (66%), Gaps = 17/230 (7%)
Query: 1458 QFIRIMNSDDSKMQDE--EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1515
Q IRI + QDE ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1248 QVIRIR----TIRQDEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL----- 1298
Query: 1516 DSKKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
R++ G A+ D W L+T G++L +VL+ VDP RT++ND+ +I +V
Sbjct: 1299 TKGTRLVEAADGSELALKDDPRCTQWYLDTSGSALREVLAVPGVDPTRTYTNDLWQIIEV 1358
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
GIE R ++ KE+ VL F G YVN+RH+ALLCDVMT +G + A+TRHGINR DTGALM
Sbjct: 1359 FGIEGTRAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALM 1418
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
RCSFEETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+ LD +
Sbjct: 1419 RCSFEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGNFDVYLDPK 1468
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + +DL IF+D+NA++ V+RIR + D+ +ED K+EDD+ L+ +EA
Sbjct: 1224 VAQRIKEEYPNDLAVIFSDNNADEQVIRIRTIRQDE----KDEDGEKKIEDDVMLKRLEA 1279
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1280 HLLDTLTLRGV 1290
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 153/227 (67%), Gaps = 11/227 (4%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
R++ S D E+D +E+D+FLR +E ML+ ++L+G++ I +V++ +
Sbjct: 1248 RVLGSAD----KEDDGNGTIEEDIFLRQLENTMLNSVSLRGVKGINRVFLM-----ENDK 1298
Query: 1521 IIITESGEFKAI--ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
I I + G K +W+LETDG +L V+ VD RT+SN EIF VLGIEA R +
Sbjct: 1299 ITIAKDGSIKNGQEKEWVLETDGVNLKTVMCIDGVDFKRTYSNSCVEIFNVLGIEAARAA 1358
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ KE+ V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEETV+
Sbjct: 1359 IMKELRGVIEFDGSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVE 1418
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1685
+LM+AAA E D GV+EN++ GQ+ MGTG F++ LD + KD I
Sbjct: 1419 ILMEAAAVGEKDDCHGVAENVMFGQMAPMGTGAFEVALDIDMLKDAI 1465
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN+EKLV+R R++ S D E+D +E+D+FLR
Sbjct: 1216 MHYVASRIAESFKTDLFVIWSEDNSEKLVIRCRVLGSAD----KEDDGNGTIEEDIFLRQ 1271
Query: 61 IEANMLSDMTLQFIRIMN 78
+E ML+ ++L+ ++ +N
Sbjct: 1272 LENTMLNSVSLRGVKGIN 1289
>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
Length = 1801
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 151/224 (67%), Gaps = 8/224 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI S D A + D+FL+ + + L ++TL+G+ I KVYM +
Sbjct: 1305 LRIRLKTGSAQADAPTAAE----DVFLQKLMSQYLCNVTLRGVAGITKVYMREEAVTAYN 1360
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
G+F+ +W+L+TDG +L +VL V +T SNDI EIF VLGIEA R+++
Sbjct: 1361 E----AKGQFERRNNWVLDTDGCNLEQVLPIPQVRYSKTISNDITEIFNVLGIEAARRAL 1416
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
+E+ V+ F G YVNYRHLALLCDVMT KGHLM+ITRHGINR D G L++CSFEET+++
Sbjct: 1417 LRELRAVISFDGSYVNYRHLALLCDVMTHKGHLMSITRHGINRVDRGPLIKCSFEETLEI 1476
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
L+DAA A +D + GV+EN++MGQL +GTGCFD+L+DA++ KD
Sbjct: 1477 LLDAATFAVSDGLCGVTENVMMGQLCPLGTGCFDVLIDADRLKD 1520
>gi|225561523|gb|EEH09803.1| RNA polymerase II largest subunit [Ajellomyces capsulatus G186AR]
Length = 1234
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI DSK ++D D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 745 QVIRIRQIQDSK---QDDDDDDTEYDVTLKKLESHLLDTLTLRGVAGIERAFI-----NE 796
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R+ + E G AD W+LET G++L +VL+ VD RT+SN EI +V G
Sbjct: 797 KSRVRVLEDGSLHQSADDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFIEILEVFG 856
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 857 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 916
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 917 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 962
>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
20631-21]
Length = 1728
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 161/248 (64%), Gaps = 12/248 (4%)
Query: 1468 SKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESG 1527
++M+ + + D E D+ L+ +E ++L +TL+G+ I + ++ + + +++ TE G
Sbjct: 1258 TRMEGKYEDGDNSEQDVSLKKLENHVLDSLTLRGVPGIDRAFL-----NKETKLVETEDG 1312
Query: 1528 EFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEK 1581
A D W L+T GT+L VLS VD RT+SN +I +V GIEAVR ++ +
Sbjct: 1313 ALIASKDDPKCQEWYLDTSGTALAAVLSVPGVDTTRTYSNHFVQILEVFGIEAVRSALMR 1372
Query: 1582 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1641
E+ VL F G YVN+RHLALL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+
Sbjct: 1373 ELTQVLAFDGSYVNHRHLALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILL 1432
Query: 1642 DAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGG-PAGM 1700
+AAA E D RGVSEN+I+GQL +GTG +L+LD + + + G+M G P
Sbjct: 1433 EAAAVGELDDCRGVSENVILGQLAPLGTGEMELMLDPKMLETVVSDNGRMGLMSGLPVKG 1492
Query: 1701 FFGSAATP 1708
+ AATP
Sbjct: 1493 GYEGAATP 1500
Score = 45.8 bits (107), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ +I + DLN IF+D+NAE+LV+R R++ + K +D D E D+ L+ +E
Sbjct: 1226 VAVRIKEEYPKDLNVIFSDNNAEELVIRCRMITRMEGKYEDG----DNSEQDVSLKKLEN 1281
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAV 91
++L +TL+ + R + ++K+ + ED
Sbjct: 1282 HVLDSLTLRGVPGIDRAFLNKETKLVETEDGA 1313
>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1755
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 152/228 (66%), Gaps = 12/228 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI S +DE D K+EDD+ L+ +EA++L +TL+G+ I + ++
Sbjct: 1246 QVIRIRTVRQSDEKDE-DGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFL-----TK 1299
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
R+ + E G AI D W L+T G++L VL+ VD RT++ND+ +I +V G
Sbjct: 1300 GTRLTVGEDGSELAIKDDPRCTQWYLDTSGSALRDVLAVDGVDASRTYTNDLWQIVEVFG 1359
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRC
Sbjct: 1360 IEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRC 1419
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
SFEETV++L++AAA E D RG+SEN+++GQL MGTG FD+LLD +
Sbjct: 1420 SFEETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDVLLDPK 1467
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + +DL IF+D+NA++ V+RIR + D K +ED K+EDD+ L+ +EA
Sbjct: 1222 VAQRIKEEYPNDLAVIFSDNNADEQVIRIRTVRQSDEK---DEDGEKKIEDDVMLKRLEA 1278
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVD-KMEDDMFLRCIE 104
++L +TL+ + R + +++ ED + ++DD RC +
Sbjct: 1279 HLLDTLTLRGVPGIERAFLTKGTRLTVGEDGSELAIKDDP--RCTQ 1322
>gi|12642618|gb|AAK00313.1|AF315823_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Stylonychia
mytilus]
Length = 1678
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 169/296 (57%), Gaps = 38/296 (12%)
Query: 1477 VDKMEDD-------MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF 1529
V+ +EDD M+L+ + + +D+ L+G+ I KV T I E+GE
Sbjct: 1156 VNDIEDDEEDRTVCMYLKGFQDELFNDLALKGLHEISKVTF----TKYNDEIFDVETGEC 1211
Query: 1530 KAIAD-WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQ 1588
K + WL+ETDG +L KVL ++ +T SNDI EI +VLGIEAVR S+ E+ VL
Sbjct: 1212 KQDKECWLIETDGVALQKVLGLEGINYKKTVSNDIIEILRVLGIEAVRMSLINELRFVLS 1271
Query: 1589 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1648
YG+YVNYRHL+ LCDVMT +G L AITRHGINR D+ L +CSFEETV++L++AA AE
Sbjct: 1272 SYGIYVNYRHLSTLCDVMTQRGILTAITRHGINRVDSSPLRKCSFEETVEILLEAAVFAE 1331
Query: 1649 ADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI------------PLATGMMGG 1696
DP++G++ENIIMGQL GTGCF++ +D + ++ +I P+ M G
Sbjct: 1332 TDPLKGITENIIMGQLAPFGTGCFEITIDPQVLQENAQIKPEEEDYIGGFTPIQDEMSNG 1391
Query: 1697 PAGMFFGSAATPSSMIHNPL--QTPHNTSLTNATH----QSRDKAFAPSELFLSPD 1746
+G I+ PL TPHN +TH +F+PS SP
Sbjct: 1392 NGLEMYG--------INTPLVMNTPHNDYGGASTHSMWTPGNQGSFSPSPGVYSPG 1439
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 187/344 (54%), Gaps = 51/344 (14%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
RI+ D +DE+ ME+D FLR +E ML+ ++L+G++ I +V+M +
Sbjct: 1255 RILGGAD---KDEDGLAGVMEEDEFLRSLENTMLNTVSLRGVKGIERVFMM-----QHNK 1306
Query: 1521 IIITESGEFKAI----ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
++ + G A +W+LETDG +L V+ VD RT+SN+ EIF VLGIEA R
Sbjct: 1307 VVTRQDGTISARDENEKEWVLETDGINLKTVMCIDGVDFKRTYSNNCVEIFDVLGIEAAR 1366
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
++ +EM V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEET
Sbjct: 1367 AAIMREMRNVIEFDGSYVNYRHLALLCDLMTQRGTLMAITRHGINRADTGALMRCSFEET 1426
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI---EIPL---- 1689
V++LM+AAA E D G++EN++ GQ+ MGTG FD+ LD + KD I +P+
Sbjct: 1427 VEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDIDMLKDVIVDHRLPVQNML 1486
Query: 1690 ---ATGMMGGPA-----------------GMFFGSAATPSSMIHNPLQTPHNTSL----- 1724
A G M P G F G +A S + N + P N S
Sbjct: 1487 AAQADGAM-TPGQVAMTPYDSSSPMWSQDGSFKGESAAFSPLAVNGGEDPANFSYLGFGQ 1545
Query: 1725 ----TNATHQSRDKAFAPSELFLSPDSRYPYIRELITLCSHSSF 1764
+ ++PS SP S PYI + + S F
Sbjct: 1546 SPMGAGGMSPAAGAGYSPSSPGYSPTS--PYIPQSPFAGATSPF 1587
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN+EKLV+R RI+ D +DE+ ME+D FLR
Sbjct: 1223 MSYVAGRIAESFKQDLFVIWSEDNSEKLVIRCRILGGAD---KDEDGLAGVMEEDEFLRS 1279
Query: 61 IEANMLSDMTLQFIR 75
+E ML+ ++L+ ++
Sbjct: 1280 LENTMLNTVSLRGVK 1294
>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium dendrobatidis
JAM81]
Length = 1797
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/200 (53%), Positives = 143/200 (71%), Gaps = 6/200 (3%)
Query: 1479 KMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA-IADWLL 1537
++E+D FLR IE N+L+D+TL GI+ I +V++ K + ESG + ++ L
Sbjct: 1271 RLEEDAFLRRIEHNILNDITLCGIKNISRVFI-----SESKYTSVDESGVIRPDNPEYFL 1325
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
ETDGT+L++VL+ VD VRT+SN CEI VLGIEA R ++ KE V++F G YVNYR
Sbjct: 1326 ETDGTNLIQVLAHHGVDAVRTYSNFACEIMDVLGIEATRAAILKETRKVIEFDGSYVNYR 1385
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
HLALLCD+MT +G +MAI+RHGINR D GAL R SFEETVD+L++AA E D +GVSE
Sbjct: 1386 HLALLCDIMTQRGSIMAISRHGINRTDAGALARASFEETVDLLLEAAGLGELDDCKGVSE 1445
Query: 1658 NIIMGQLPRMGTGCFDLLLD 1677
N+++GQL +GTG F +LLD
Sbjct: 1446 NVMLGQLAPLGTGEFGVLLD 1465
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M+AI ++ FG DL C +DDNA++L++ RI+N D M ++ ++E+D FLR
Sbjct: 1225 MDAICAELMQPFGGDLKCWHSDDNAQELIILARIVNDDKGDMDMDD----RLEEDAFLRR 1280
Query: 61 IEANMLSDMTLQFIR 75
IE N+L+D+TL I+
Sbjct: 1281 IEHNILNDITLCGIK 1295
>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
Length = 1747
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI DSK ++D D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1258 QVIRIRQVQDSK---QDDDDDDTEYDVTLKKLESHLLDTLTLRGVAGIERAFI-----NE 1309
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R+ + E G AD W+LET G++L +VL+ VD RT+SN EI +V G
Sbjct: 1310 KSRVRVLEDGSLHQSADDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFIEILEVFG 1369
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1370 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1429
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1430 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 1475
>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
Length = 1760
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + ++D K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRTEDEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R++I + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVIDDDGSEIAKKDSDKCTQWYLDTSGSALRDVLAVEGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDVYLDPK 1472
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + +DL IF+D+NA++ V+RIR + ++D K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPNDLAVIFSDNNADEQVIRIRTIRTEDEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
subunit, long PHYSPTS repeat at
gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
[Cryptosporidium parvum Iowa II]
Length = 1902
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 142/206 (68%), Gaps = 8/206 (3%)
Query: 1480 MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD--WLL 1537
+E+ FL + LS +TL+GI I KVYM ++++ +S K + D W+L
Sbjct: 1326 VEEHKFLEKLMTECLSQITLRGINNIKKVYM------KEEQVSRYDSVSQKMVRDNQWVL 1379
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
+TDG +L VL +D RT SNDI E+F VLGIEAVR+++ +E+ TV+ F G YVNYR
Sbjct: 1380 DTDGCNLEAVLCHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYR 1439
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
HLALLCD MT KGHLM+ITRHGINR D G L +CSFEETV+VLMDAA E D + GVSE
Sbjct: 1440 HLALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFGETDYLNGVSE 1499
Query: 1658 NIIMGQLPRMGTGCFDLLLDAEKCKD 1683
N+++GQL GT CFD+L+D +K +D
Sbjct: 1500 NVMLGQLAPYGTACFDVLIDPDKLRD 1525
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 214 bits (546), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/231 (49%), Positives = 156/231 (67%), Gaps = 11/231 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR D K DE+ + E+D L+ IE+NML +TL+G+ I +V M + D K
Sbjct: 1197 IRCRVVRDPKSMDEDS---EAEEDQMLKRIESNMLEAITLRGVPDITRVVMM--KYDRK- 1250
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ E+G++ + +W+LETDG +L +V+ VD R ++N +I VLGIEA R S+
Sbjct: 1251 --LPDETGKYAKVPEWVLETDGVNLAEVMCVPGVDASRIYTNSFIDILTVLGIEAGRASL 1308
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+ G YVNYRH+ALL DVMT++GHLMA+TRHGINR DTGALMRCSFEETV++
Sbjct: 1309 YKEVYNVIASDGSYVNYRHMALLVDVMTSRGHLMAVTRHGINRNDTGALMRCSFEETVEI 1368
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA 1690
L++A A AE D RGVSEN+I+GQL +GTG FD+++D KD IP++
Sbjct: 1369 LLEAGAAAELDDCRGVSENVILGQLAPVGTGAFDVMVDDSALKD---IPVS 1416
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI FGDDL I+++DNAEKL++R R++ D K DE+ + E+D L+
Sbjct: 1168 MAEVGEKIKETFGDDLFIIWSEDNAEKLIIRCRVVR--DPKSMDED---SEAEEDQMLKR 1222
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMED 96
IE+NML +TL+ + +M D K+ DE K+ +
Sbjct: 1223 IESNMLEAITLRGVPDITRVVMMKYDRKLPDETGKYAKVPE 1263
>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1645
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 143/199 (71%), Gaps = 4/199 (2%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSL 1544
FL ++LS++ L+G++ I KVYM +T ++ +G F ++ W+L+TDG +L
Sbjct: 1213 FLNKFMTDVLSNIKLRGVKGITKVYMRE-ETFTRYN---GATGSFDRVSQWVLDTDGCNL 1268
Query: 1545 MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
VL V+ +TFSND+ EIF V GIEA R+++ +E+ V+ F G YVNYRHL+LLCD
Sbjct: 1269 ENVLPIPCVEYTKTFSNDVSEIFNVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCD 1328
Query: 1605 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
+MT KG+LM+ITRHG+NR D G L++CSFEET++ L+ AAA +E DP+RGV+EN+++GQL
Sbjct: 1329 IMTQKGYLMSITRHGLNRADRGPLVKCSFEETLETLLSAAAFSEVDPLRGVTENVVVGQL 1388
Query: 1665 PRMGTGCFDLLLDAEKCKD 1683
GTGCFD+++D K +D
Sbjct: 1389 SPYGTGCFDIMIDELKLRD 1407
>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1747
Score = 214 bits (545), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI DSK ++D D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1258 QVIRIRQIQDSK---QDDDDDDTEYDVTLKKLESHLLDTLTLRGVAGIERAFI-----NE 1309
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R+ + E G AD W+LET G++L +VL+ VD RT+SN EI +V G
Sbjct: 1310 KSRVRVLEDGSLHQSADDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFIEILEVFG 1369
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1370 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1429
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1430 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 1475
>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis
TU502]
gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Cryptosporidium hominis]
Length = 1895
Score = 214 bits (545), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 142/206 (68%), Gaps = 8/206 (3%)
Query: 1480 MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD--WLL 1537
+E+ FL + LS +TL+GI I KVYM ++++ +S K + D W+L
Sbjct: 1319 VEEHKFLEKLMTECLSQITLRGINNIKKVYM------KEEQVSRYDSISQKMVRDNQWVL 1372
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
+TDG +L VL +D RT SNDI E+F VLGIEAVR+++ +E+ TV+ F G YVNYR
Sbjct: 1373 DTDGCNLEAVLCHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYR 1432
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
HLALLCD MT KGHLM+ITRHGINR D G L +CSFEETV+VLMDAA E D + GVSE
Sbjct: 1433 HLALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFGETDYLNGVSE 1492
Query: 1658 NIIMGQLPRMGTGCFDLLLDAEKCKD 1683
N+++GQL GT CFD+L+D +K +D
Sbjct: 1493 NVMLGQLAPYGTACFDVLIDPDKLRD 1518
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 214 bits (544), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 182/324 (56%), Gaps = 40/324 (12%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI + KM EE D +DMFL+ IE +L + L GI I +V++ K
Sbjct: 1243 IRIRVVAEEKMDGEELLGD---EDMFLKRIELTLLDGVELGGIPGITRVFI-----SEGK 1294
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ ++++ GE+ +W LETDG +L +V++ VD R +SN+ E++Q+LGIEA R ++
Sbjct: 1295 QTVLSQKGEYDQQQEWFLETDGINLQQVMAVDGVDFTRAYSNNCYEVWQILGIEAGRNAL 1354
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE++ V+ G YVNYRH+ALLCD+M KGHLM+ITRHGINR D GAL RCSFEETV++
Sbjct: 1355 YKELHGVIASGGSYVNYRHMALLCDLMCNKGHLMSITRHGINRTDAGALSRCSFEETVEI 1414
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI---EIPLATGMM-G 1695
L++AAA + D +GV+EN+++GQ+ MGTG FD+ LD KD I +P+ +
Sbjct: 1415 LLEAAAVGDVDDCQGVAENVLLGQMAPMGTGAFDVSLDLGMLKDVIVDHRLPVQIALAQK 1474
Query: 1696 GPAGMFFGSAATP----------------SSMIHNPLQTPHN-------TSLTNATHQSR 1732
G GM G A TP +S +P+QT +N + Q
Sbjct: 1475 GAGGMTPGGAMTPYDNMSPMWNGGGMGGVASASFSPMQTSNNDEGGYGAMPYGMSPMQGG 1534
Query: 1733 DKAFAPSELFLSPDSRY-----PY 1751
+AP SP S + PY
Sbjct: 1535 QSPYAPGGAGFSPTSPFATATSPY 1558
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 214 bits (544), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 182/324 (56%), Gaps = 40/324 (12%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI + KM EE D +DMFL+ IE +L + L GI I +V++ K
Sbjct: 1243 IRIRVVAEEKMDGEELLGD---EDMFLKRIELTLLDGVELGGIPGITRVFI-----SEGK 1294
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ ++++ GE+ +W LETDG +L +V++ VD R +SN+ E++Q+LGIEA R ++
Sbjct: 1295 QTVLSQKGEYDQQQEWFLETDGINLQQVMAVDGVDFTRAYSNNCYEVWQILGIEAGRNAL 1354
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE++ V+ G YVNYRH+ALLCD+M KGHLM+ITRHGINR D GAL RCSFEETV++
Sbjct: 1355 YKELHGVIASGGSYVNYRHMALLCDLMCNKGHLMSITRHGINRTDAGALSRCSFEETVEI 1414
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI---EIPLATGMM-G 1695
L++AAA + D +GV+EN+++GQ+ MGTG FD+ LD KD I +P+ +
Sbjct: 1415 LLEAAAVGDVDDCQGVAENVLLGQMAPMGTGAFDVSLDLGMLKDVIVDHRLPVQIALAQK 1474
Query: 1696 GPAGMFFGSAATP----------------SSMIHNPLQTPHN-------TSLTNATHQSR 1732
G GM G A TP +S +P+QT +N + Q
Sbjct: 1475 GAGGMTPGGAMTPYDNMSPMWNGGGMGGVASASFSPMQTSNNDEGGYGAMPYGMSPMQGG 1534
Query: 1733 DKAFAPSELFLSPDSRY-----PY 1751
+AP SP S + PY
Sbjct: 1535 QSPYAPGGAGFSPTSPFATATSPY 1558
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 214 bits (544), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 167/259 (64%), Gaps = 13/259 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI +ED K+EDD+ L+ +E ++L ++L+G++ I + ++ +
Sbjct: 1250 QIIRIRPMHAGNDNKDEDGEKKIEDDVMLKRLETHLLDTLSLRGVKGIERAFL-----NK 1304
Query: 1518 KKRIIITESGEFKAI------ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
+ ++I TE G A ++W L+T GT+L +VL+ VD RT++N + ++ +V G
Sbjct: 1305 ETKLIETEDGALLAAKADERCSEWYLDTSGTALRQVLAVDGVDSNRTYTNHLWQVVEVFG 1364
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALLCDVMT +G + A+TRHGINR DTGALMRC
Sbjct: 1365 IEAARAALVRELTQVLAFDGSYVNHRHLALLCDVMTYRGTISAVTRHGINRADTGALMRC 1424
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+LLD + + I
Sbjct: 1425 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVISDNSRM 1484
Query: 1692 GMMGG-PA-GMFFGSAATP 1708
G+M G P G G AATP
Sbjct: 1485 GLMPGMPVKGGEAGGAATP 1503
Score = 49.3 bits (116), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 61/96 (63%), Gaps = 8/96 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS-DDSKMQDEEDAVDKMEDDMFLR 59
+E ++ +I + +DL IF+D+NAE+ ++RIR M++ +D+K +ED K+EDD+ L+
Sbjct: 1223 VEDVARRIKEEYPNDLAVIFSDNNAEEQIIRIRPMHAGNDNK---DEDGEKKIEDDVMLK 1279
Query: 60 CIEANMLSDMTLQFI----RIMNSDDSKMQDEEDAV 91
+E ++L ++L+ + R + ++K+ + ED
Sbjct: 1280 RLETHLLDTLSLRGVKGIERAFLNKETKLIETEDGA 1315
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 213 bits (543), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 144/202 (71%), Gaps = 4/202 (1%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSL 1544
FLR +E+ +L+ M L GI+ I KV+M +K++ I E G++K +W+L+TDG +L
Sbjct: 1219 FLRTLESELLNKMPLGGIKDIHKVFMR----QAKRQYIDKEYGKYKTDEEWVLDTDGVNL 1274
Query: 1545 MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
V+ VD RT SNDI EIF+ LGIEAVR+++ +E+ V+ F G YVNYRHL++L D
Sbjct: 1275 KAVMCHEAVDHTRTMSNDIVEIFETLGIEAVREALLQEIRGVISFDGAYVNYRHLSILVD 1334
Query: 1605 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
VMT +GHLMAITRHGINR DTG LM+CSFEET D+L++AA D ++GVSENI++GQL
Sbjct: 1335 VMTYRGHLMAITRHGINRVDTGPLMKCSFEETTDILLEAATFGMRDNLQGVSENIVLGQL 1394
Query: 1665 PRMGTGCFDLLLDAEKCKDGIE 1686
+GTG F ++L+ + + IE
Sbjct: 1395 APVGTGSFKMMLNEKMLQQAIE 1416
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 213 bits (542), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + SD K +E+ K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRSDSDK---DEEGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L +VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVVDDDGSEIAKKDDDKCTQWYLDTSGSALREVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 50.8 bits (120), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + SD K +E+ K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAVIFSDNNADEQVIRIRTIRSDSDK---DEEGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
Length = 1754
Score = 213 bits (542), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRTDNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRTDNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 213 bits (542), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRTDNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDEKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRTDNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 213 bits (542), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRTDNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDEKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRTDNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
inebrians]
Length = 1761
Score = 213 bits (542), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ I + ++
Sbjct: 1255 IRTIRADNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ ++ +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQVVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRADNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 213 bits (542), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRTDNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRTDNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
Length = 1761
Score = 213 bits (541), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ I + ++
Sbjct: 1255 IRTIRADNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ ++ +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQVVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRADNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
Length = 1752
Score = 213 bits (541), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRTDNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRTDNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
Length = 1737
Score = 213 bits (541), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRTDNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRTDNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 213 bits (541), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 153/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRTDNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRTDNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 213 bits (541), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/257 (47%), Positives = 168/257 (65%), Gaps = 26/257 (10%)
Query: 1474 EDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIA 1533
+DA+D E+D LR +EA++L+ + L+GIE I +V+M KK + + + G+++ +
Sbjct: 1261 QDALD--EEDTILRKLEAHILNQIPLRGIEGINRVFM-----VEKKNVALNDQGDYEQFS 1313
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W+LETDG +L V++ +VD RT+SN+I EI + LGIEA R ++ KE+ V++F G Y
Sbjct: 1314 EWVLETDGINLKNVMTVDNVDAGRTYSNNIVEITETLGIEAGRAALLKELRNVIEFDGSY 1373
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
VNYRHL++LCDVMT G LMAITRHGINR +T AL R SFEETV++LM+AAA AE D +
Sbjct: 1374 VNYRHLSMLCDVMTKHGILMAITRHGINRAETSALARSSFEETVEILMEAAACAELDQCQ 1433
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLD-----AEKCKDGIEIPLATGMMGGPAGMFFGSAATP 1708
GV+ENIIMGQ+ +GTG F ++LD A K GI A +GS ATP
Sbjct: 1434 GVAENIIMGQVAPLGTGNFKVMLDEKSLNAMAMKAGIR-----------ARDKYGS-ATP 1481
Query: 1709 SSMIH--NPLQTPHNTS 1723
+ NP +TP S
Sbjct: 1482 GAFTPYVNPEKTPFYPS 1498
>gi|221055475|ref|XP_002258876.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808946|emb|CAQ39649.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi strain
H]
Length = 2353
Score = 213 bits (541), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+D FL+ + LS + L+GIE I KVYM + K + +G+F + W+L+TDG
Sbjct: 1739 EDTFLKKLMEQCLSTLKLRGIENITKVYMR----EESKITYDSNNGKFVRSSHWVLDTDG 1794
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L + VD +T SNDI EIF+VLGIEAVR+++ KE+ TV+ F YVNYRHL++
Sbjct: 1795 CNLEHIFCAPHVDYKKTISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1854
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCDVMT +G+LM+ITRHGINR D G L++CSFEETV++L++AAA A+ D ++G++ENI++
Sbjct: 1855 LCDVMTQRGYLMSITRHGINRVDRGPLVKCSFEETVEILLEAAAFAQVDNLKGITENIML 1914
Query: 1662 GQLPRMGTGCFDLLLDAEKCKD 1683
GQL ++GTG FD+++D +K D
Sbjct: 1915 GQLCKIGTGVFDIIIDNQKLSD 1936
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 213 bits (541), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 179/322 (55%), Gaps = 57/322 (17%)
Query: 1472 DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF-- 1529
D ED + +E+D+ L+ EA++L +TL+G++ I + ++ + K R+ + +G
Sbjct: 1278 DREDK-EGLEEDLMLKRFEAHVLDALTLRGVQGISRAFI-----NEKTRVKVDNNGGLVM 1331
Query: 1530 ----KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNT 1585
+++L+T GT+L VL+ VDP R +SN+ E+ +V GIEA R ++ KE+
Sbjct: 1332 NRSEPGCIEYVLDTSGTNLAAVLTIDGVDPTRAYSNNFVEVLEVFGIEATRGALLKELTQ 1391
Query: 1586 VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAA 1645
VL F G YVN RHL LLCDVMT++GHLMAITRHGINR DTGALMRCSFEETV++L++AAA
Sbjct: 1392 VLAFDGSYVNQRHLTLLCDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILLEAAA 1451
Query: 1646 HAEADPMRGVSENIIMGQLPRMGTGCFDLLLD------------------AEKCKDGIEI 1687
E D RG+SEN+++GQL MGTG FD+ LD A K +G +
Sbjct: 1452 AGELDDCRGISENVMLGQLAPMGTGEFDVYLDEGMLSQLITDNTRTGAPFANKADNGFD- 1510
Query: 1688 PLATGMM-------GGPAGMFFGSAATP------SSMIHN---------PLQTPHNTSLT 1725
+G M G P M+ G AA+P S M+ + P+ P +
Sbjct: 1511 ---SGQMTPYDLGSGSPDPMYLG-AASPGFNVSFSPMVQSGSDYEPPSYPMPEPFGGTTP 1566
Query: 1726 NATHQSRDKAFAPSELFLSPDS 1747
+ ++P+ SP S
Sbjct: 1567 RSPFGMASPGYSPASPNYSPTS 1588
>gi|380495547|emb|CCF32312.1| DNA-directed RNA polymerase II subunit RPB1 [Colletotrichum
higginsianum]
Length = 1192
Score = 212 bits (540), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 170/257 (66%), Gaps = 16/257 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR M++ + K +ED K+EDD+ L+ +E ++L ++L+G++ I + ++ + +
Sbjct: 693 IRPMHAGNDK---DEDGEKKIEDDVMLKRLETHLLDTLSLRGVKGIERAFL-----NKET 744
Query: 1520 RIIITESGEFKAI------ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
++I T+ G A ++W L+T GT+L +VL+ VD RT++N + +I +V GIE
Sbjct: 745 KLIETDDGALLAAKADERCSEWYLDTSGTALRQVLAVDGVDSNRTYTNHLWQIVEVFGIE 804
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ +E+ VL F G YVN+RHLALLCDVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 805 AARAALVRELTQVLAFDGSYVNHRHLALLCDVMTYRGTISAVTRHGINRADTGALMRCSF 864
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1693
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+LLD + + I G+
Sbjct: 865 EETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVISDNSRMGL 924
Query: 1694 MGG-PA-GMFFGSAATP 1708
M G P G G AATP
Sbjct: 925 MPGMPVKGGEAGGAATP 941
Score = 50.8 bits (120), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ +I + +DL IF+D+NAE+ ++RIR M++ + K +ED K+EDD+ L+
Sbjct: 662 VEDVARRIKEEYPNDLAVIFSDNNAEEQIIRIRPMHAGNDK---DEDGEKKIEDDVMLKR 718
Query: 61 IEANMLSDMTLQFIR 75
+E ++L ++L+ ++
Sbjct: 719 LETHLLDTLSLRGVK 733
>gi|389583419|dbj|GAB66154.1| DNA-directed RNA polymerase II largest subunit [Plasmodium cynomolgi
strain B]
Length = 2270
Score = 212 bits (540), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+D FL+ + LS + L+GIE I KVYM + K + +G+F + W+L+TDG
Sbjct: 1777 EDTFLKKLMEQCLSTLKLRGIENITKVYMR----EESKITYDSNNGKFVRSSHWVLDTDG 1832
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L + VD +T SNDI EIF+VLGIEAVR+++ KE+ TV+ F YVNYRHL++
Sbjct: 1833 CNLEHIFCASHVDYKKTISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1892
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCDVMT +G+LM+ITRHGINR D G L++CSFEETV++L++AAA A+ D ++G++ENI++
Sbjct: 1893 LCDVMTQRGYLMSITRHGINRVDRGPLVKCSFEETVEILLEAAAFAQVDNLKGITENIML 1952
Query: 1662 GQLPRMGTGCFDLLLDAEKCKD 1683
GQL ++GTG FD+++D +K D
Sbjct: 1953 GQLCKIGTGVFDIIIDNQKLSD 1974
>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis ER-3]
gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1746
Score = 212 bits (539), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI DSK ++D D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1258 QVIRIRQIQDSK---QDDDDDDTEYDVTLKKLESHLLDTLTLRGVAGIERAFI-----NE 1309
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R+ + E G A+ W+LET G++L +VL+ VD RT+SN EI +V G
Sbjct: 1310 KSRVRVLEDGSLYQSAEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFIEILEVFG 1369
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1370 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1429
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1430 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 1475
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 212 bits (539), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 144/205 (70%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+GIE I +V M + D K + E+GE++ + +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGIEGIERVVMM--KYDRK---VPNETGEYQKVPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ VDP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGVDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSSTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 47.0 bits (110), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DNAEKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKDTFKNDLFVIWSEDNAEKLIIRCRVVRP------KALDAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMED 96
IE ML ++TL+ I +M D K+ +E K+ +
Sbjct: 1263 IENTMLENITLRGIEGIERVVMMKYDRKVPNETGEYQKVPE 1303
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 157/227 (69%), Gaps = 15/227 (6%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSK 1518
R++ D +DE+D + ++E+D+FLR +E ML+ + L+G+ I + ++ H
Sbjct: 1251 RVLGGAD---KDEDD-LGQVEEDIFLRQLENTMLNSVELRGVPGIQRAFLLEH------- 1299
Query: 1519 KRIIITESGEFKAIAD--WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
+I I+ +G +A ++ W+LETDG +L V+ VD RT+SN+ E+F VLGIEA R
Sbjct: 1300 DKINISPTGSIEARSEKEWVLETDGVNLKTVMCIDGVDFKRTYSNNCVEVFDVLGIEAAR 1359
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
++ KE+ V++F G YVNYRHLALLCD+MT +G LMAITRHGINR DTGALMRCSFEET
Sbjct: 1360 AAIMKELRNVIEFDGSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEET 1419
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
V++LM+AAA E D G++ENI+ GQ+ MGTG F++ LD + KD
Sbjct: 1420 VEILMEAAAVGEKDDCHGIAENILFGQMAPMGTGAFEVALDIDMLKD 1466
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN+EKLV+R R++ D +DE+D + ++E+D+FLR
Sbjct: 1219 MTYVANRIAQSFKTDLFVIWSEDNSEKLVVRCRVLGGAD---KDEDD-LGQVEEDIFLRQ 1274
Query: 61 IEANMLSDMTLQFI 74
+E ML+ + L+ +
Sbjct: 1275 LENTMLNSVELRGV 1288
>gi|156096993|ref|XP_001614530.1| DNA-directed RNA polymerase II largest subunit [Plasmodium vivax
Sal-1]
gi|148803404|gb|EDL44803.1| DNA-directed RNA polymerase II largest subunit, putative [Plasmodium
vivax]
Length = 2379
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+D FL+ + LS + L+GIE I KVYM + K + +G+F + W+L+TDG
Sbjct: 1771 EDTFLKKLMEQCLSTLKLRGIENITKVYMR----EESKITYDSTNGKFVRSSHWVLDTDG 1826
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L + VD +T SNDI EIF+VLGIEAVR+++ KE+ TV+ F YVNYRHL++
Sbjct: 1827 CNLEHIFCASHVDYKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1886
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCDVMT +G+LM+ITRHGINR D G L++CSFEETV++L++AAA A+ D ++G++ENI++
Sbjct: 1887 LCDVMTQRGYLMSITRHGINRVDRGPLVKCSFEETVEILLEAAAFAQVDNLKGITENIML 1946
Query: 1662 GQLPRMGTGCFDLLLDAEKCKD 1683
GQL ++GTG FD+++D +K D
Sbjct: 1947 GQLCKIGTGVFDIIIDNQKLSD 1968
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 211 bits (538), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 156/234 (66%), Gaps = 15/234 (6%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+DMFL+ IE +L + L GI I +V++ K+++++++GE+ +W LETDG
Sbjct: 1269 EDMFLKRIEGTLLDQVELGGITGITRVFI-----SEGKQVVVSQNGEYDQEKEWFLETDG 1323
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L V++ V+ RT+SN+ E+++ LGIEA R ++ KE+N V++ G YVNYRHLAL
Sbjct: 1324 INLKAVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRHLAL 1383
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCD+M +KG LM+ITRHGINR D GAL R +FEETV++L++AAA + D +GV+EN+++
Sbjct: 1384 LCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGDVDDCKGVAENVLL 1443
Query: 1662 GQLPRMGTGCFDLLLDAEKCKDGI---EIPL----ATGMMGGPAGMFFGSAATP 1708
GQ+ MGTG FD+ LD KD I +P+ A G+ G GM G A TP
Sbjct: 1444 GQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMAAGIAG---GMTPGGAMTP 1494
Score = 42.0 bits (97), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 13 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 72
G D+ I ++DNA KLV+RIR++ ++ +DEE D +DMFL+ IE +L + L
Sbjct: 1235 GKDVFVIHSEDNAPKLVIRIRVV----AEKEDEELLGD---EDMFLKRIEGTLLDQVELG 1287
Query: 73 FI----RIMNSDDSKMQDEEDAVDKMEDDMFL 100
I R+ S+ ++ ++ E + FL
Sbjct: 1288 GITGITRVFISEGKQVVVSQNGEYDQEKEWFL 1319
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 211 bits (537), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 132/196 (67%), Gaps = 5/196 (2%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSL 1544
L+ +EA ML +TL+G+ I +V+M + I E G+F +W+LETDG +L
Sbjct: 1184 LLKALEAQMLESITLRGVSGISRVFMM-----KYDKTYIAEDGDFAKKQEWVLETDGINL 1238
Query: 1545 MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
V++ +D RT+SN EI V GIEA R ++ KE+ V+ F G YVNYRHLALL D
Sbjct: 1239 ADVITVEGIDTTRTYSNSFVEILFVFGIEAARSALYKEILNVIAFDGSYVNYRHLALLVD 1298
Query: 1605 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
+MT KGHL+AI+RHG NR DTGALMRCSFEETV++L DA A AE D GVS+NII+GQ+
Sbjct: 1299 LMTYKGHLIAISRHGFNRNDTGALMRCSFEETVEILFDAGASAELDTCDGVSQNIILGQM 1358
Query: 1665 PRMGTGCFDLLLDAEK 1680
GTG FD+ LD EK
Sbjct: 1359 APFGTGSFDVYLDDEK 1374
Score = 44.7 bits (104), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 11/101 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M+ ++ KI FGDDL I+++DNA+KLV+R RI+ + + ++EED D + L+
Sbjct: 1133 MQQVAAKIMENFGDDLFVIWSEDNADKLVIRCRIVREEKALDEEEEDTEDGL-----LKA 1187
Query: 61 IEANMLSDMTLQFI----RI--MNSDDSKMQDEEDAVDKME 95
+EA ML +TL+ + R+ M D + + ++ D K E
Sbjct: 1188 LEAQMLESITLRGVSGISRVFMMKYDKTYIAEDGDFAKKQE 1228
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 211 bits (537), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 187/316 (59%), Gaps = 37/316 (11%)
Query: 1436 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1495
+K D+F+ E N S+ + RI+++ + KM +A+ DD+FLR +E +L+
Sbjct: 1234 EKFTSDLFIIWSEDN--SEKLIIRCRIVHTPE-KM----EAMSDFSDDLFLRQLEVTLLN 1286
Query: 1496 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF--KAIAD----WLLETDGTSLMKVLS 1549
+ L+G+ + +V++ K ++I G KA+ D W+LETDG +L KVL+
Sbjct: 1287 TVDLRGVPGVDRVFL-----VKKDKVITRPDGTLQNKALTDAEREWVLETDGVNLKKVLA 1341
Query: 1550 ERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1609
VD RT SN EIF VLGIEA R S+ +E+ V++F G YVNYRHLA+L D+MT K
Sbjct: 1342 VDGVDFRRTTSNSCTEIFSVLGIEAARASLLRELRGVIEFDGSYVNYRHLAILVDLMTNK 1401
Query: 1610 GHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGT 1669
G+L AITRHGINR DTGALMRCSFEETV++LMDAA+ E D RG++EN++ GQ+ MGT
Sbjct: 1402 GNLTAITRHGINRADTGALMRCSFEETVEILMDAASLGEKDDCRGIAENVMFGQIAPMGT 1461
Query: 1670 GCFDLLLDAEKCKD-----GIEIPLATGMMGGPAGMFFGSAATPSSMIHNPLQTPH--NT 1722
G FD+ LD E KD + IP MM G AATP ++ TP+ N+
Sbjct: 1462 GSFDVALDMEMLKDVMVESTVPIPH---MM----GSVMDGAATPGGVM-----TPYDNNS 1509
Query: 1723 SLTNATHQSRDKAFAP 1738
+ AF+P
Sbjct: 1510 PMPYELKVDHQAAFSP 1525
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ KI F DL I+++DN+EKL++R RI+++ + KM +A+ DD+FLR
Sbjct: 1225 MAYVASKIGEKFTSDLFIIWSEDNSEKLIIRCRIVHTPE-KM----EAMSDFSDDLFLRQ 1279
Query: 61 IEANMLSDMTLQFI 74
+E +L+ + L+ +
Sbjct: 1280 LEVTLLNTVDLRGV 1293
>gi|157841445|gb|ABV83185.1| RNA polymerase 2 [Poikilolaimus oxycercus]
Length = 612
Score = 211 bits (536), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/150 (66%), Positives = 120/150 (80%), Gaps = 1/150 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQGIE I KVYMH TD KK
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGIETIAKVYMHEATTDDKK 522
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIIT G F+ I +W+LETDGT+L++VL E +VD +RT SNDICEIF+VLGIEA RK++
Sbjct: 523 KIIITADGSFETIPEWILETDGTALLRVLGEPNVDRIRTTSNDICEIFEVLGIEAARKAI 582
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1609
E+EM V+ F G YVNYRHLALLCDVMTAK
Sbjct: 583 EREMKHVISFDGSYVNYRHLALLCDVMTAK 612
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+E+I+ GFG DL+ I++DDNAEKLV R+RI N D K + +E VDKMEDD FLRC
Sbjct: 433 MEAIAERIHCGFGGDLHTIYSDDNAEKLVFRLRIANVDTDKEEPDEQ-VDKMEDDAFLRC 491
Query: 61 IEANMLSDMTLQFI 74
+E+NMLSD+TLQ I
Sbjct: 492 VESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K + +E VDKMEDD FLRC+E+NMLSD+TLQ I
Sbjct: 464 LRIANVDTDKEEPDEQ-VDKMEDDAFLRCVESNMLSDLTLQGI 505
>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
AWRI1499]
Length = 1699
Score = 211 bits (536), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 156/245 (63%), Gaps = 7/245 (2%)
Query: 1436 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1495
D DD+F+ E N ++ ++ RIM D D DA + +D L+ +E+ ML
Sbjct: 1210 DSFGDDLFVIWSEDNA-ENLVIR-CRIMREDKPXDADAADADAEDTEDGLLKALESQMLE 1267
Query: 1496 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDP 1555
+TL GI I +V+M + I SG+F +W+LETDG +L V++ VDP
Sbjct: 1268 SITLGGIXGISRVFMM-----KYDKTYIDSSGDFAKKKEWVLETDGINLSDVIAVDGVDP 1322
Query: 1556 VRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
RT+SN EI VLGIEA R+++ KE+ V+ F G YVNYRHLALL D+MT KGHL+AI
Sbjct: 1323 TRTYSNSFVEILSVLGIEAARRALYKEILNVIAFDGSYVNYRHLALLVDLMTYKGHLIAI 1382
Query: 1616 TRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
+RHG NR +TGALMRC+FEETV++L +A A AE D GVS+N+I+GQ+ +GTG F L
Sbjct: 1383 SRHGFNRNETGALMRCTFEETVEILFEAGASAELDTCDGVSQNVILGQMAPVGTGSFQLY 1442
Query: 1676 LDAEK 1680
LD +K
Sbjct: 1443 LDQDK 1447
Score = 48.9 bits (115), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I FGDDL I+++DNAE LV+R RIM D D DA + +D L+
Sbjct: 1201 MSQVAGRITDSFGDDLFVIWSEDNAENLVIRCRIMREDKPXDADAADADAEDTEDGLLKA 1260
Query: 61 IEANMLSDMTLQFI 74
+E+ ML +TL I
Sbjct: 1261 LESQMLESITLGGI 1274
>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
Length = 1607
Score = 211 bits (536), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 156/225 (69%), Gaps = 11/225 (4%)
Query: 1460 IRIM-NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
IRI+ N D ++Q EED +FL+ + ML+D+ L+G+ I KV++ + D
Sbjct: 1045 IRIVDNDPDKEVQGEED--------VFLKSLAQQMLTDIALKGVPGISKVFIV--KQDKI 1094
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
R E+GE+ ++ +++LETDGT+L VL+ VD RT SN+ E+F+V GIEA R S
Sbjct: 1095 TRRFDPETGEWDSLKEYVLETDGTNLKDVLAVDGVDVSRTLSNNCVEVFRVFGIEAARGS 1154
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ KE+ V++F G YVNYRHLALL D+MT++G LMAITRHGINR + GALMRC+FEETV+
Sbjct: 1155 LLKEIRNVIEFDGSYVNYRHLALLVDIMTSQGTLMAITRHGINRTNQGALMRCTFEETVE 1214
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
+LM+AA+ + D +GV +N+++GQ+ MGTG FDL LD + KD
Sbjct: 1215 ILMEAASMGDMDDCKGVGQNVLLGQMAPMGTGSFDLNLDVDMLKD 1259
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 9/75 (12%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIM-NSDDSKMQDEEDAVDKMEDDMFLR 59
M ++ KI A FG D+ + ++DNAE+LVLRIRI+ N D ++Q EE D+FL+
Sbjct: 1014 MAEVASKIGAMFGRDIFVMHSEDNAEELVLRIRIVDNDPDKEVQGEE--------DVFLK 1065
Query: 60 CIEANMLSDMTLQFI 74
+ ML+D+ L+ +
Sbjct: 1066 SLAQQMLTDIALKGV 1080
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 210 bits (535), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 144/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI I +V+M + E+GEFK +W+LETD
Sbjct: 1257 EEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSHPD-----ETGEFKQGKEWVLETD 1311
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SND E+ VLGIEA R S+ KE+ V+ F G YVNYRH+A
Sbjct: 1312 GVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN++
Sbjct: 1372 LLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVM 1431
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FDL++D
Sbjct: 1432 LGQMAPLGTGSFDLMVD 1448
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D + ++ DA E+D L+
Sbjct: 1210 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EEDQILKR 1264
Query: 61 IEANMLSDMTLQFI 74
IEA+ML ++L+ I
Sbjct: 1265 IEAHMLESISLRGI 1278
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 210 bits (535), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/199 (55%), Positives = 145/199 (72%), Gaps = 9/199 (4%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSKKRIIITESGEFKAIADWLLE 1538
E+D L+ IEA+ML ++L+GI I +V+M H K E+GEFK +W+LE
Sbjct: 1257 EEDQILKRIEAHMLESISLRGIPGITRVFMMQH-------KVSHPDETGEFKQGKEWVLE 1309
Query: 1539 TDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRH 1598
TDG +L V++ VD RT+SND E+ VLGIEA R S+ KE+ V+ F G YVNYRH
Sbjct: 1310 TDGVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRH 1369
Query: 1599 LALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSEN 1658
+ALL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN
Sbjct: 1370 MALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISEN 1429
Query: 1659 IIMGQLPRMGTGCFDLLLD 1677
+++GQ+ +GTG FDL++D
Sbjct: 1430 VMLGQMAPLGTGSFDLMVD 1448
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D + ++ DA E+D L+
Sbjct: 1210 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EEDQILKR 1264
Query: 61 IEANMLSDMTLQFI 74
IEA+ML ++L+ I
Sbjct: 1265 IEAHMLESISLRGI 1278
>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 1770
Score = 210 bits (535), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 188/346 (54%), Gaps = 52/346 (15%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
R++N+ Q ++D +E+D+FLR +E ML+ ++L+G++ I + +M DSK
Sbjct: 1255 RVINN-----QSDKDESGNIEEDVFLRKLENTMLNSISLRGVDGISRAFM---VQDSK-- 1304
Query: 1521 IIITESGEFKAIAD-WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
++T G+++ D W+LET+G +L KVL VD RT +N + E F+VLGIEA R +
Sbjct: 1305 TVLTPEGDYRTDKDDWMLETEGINLKKVLCVEGVDATRTTTNSLLEGFEVLGIEAARAVL 1364
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+ VL+F G YVN+RHLALLCD+MT +G LM+ITRHGINR D GALMRCSFEETV++
Sbjct: 1365 LTELREVLEFDGSYVNFRHLALLCDIMTYRGTLMSITRHGINRTDAGALMRCSFEETVEI 1424
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD---------------AEKCKDG 1684
L +AAA E D RG+++NI+ GQ+ +GTG FD+ LD AE DG
Sbjct: 1425 LFEAAAMGEKDDCRGIAQNIMFGQVAPLGTGAFDVYLDMDMLKDVPIDEAITAAEFTMDG 1484
Query: 1685 IEIPLATGMMG---GPA--GMFFGSAATPSSMIHNPL-------------QTPHNTSLTN 1726
P A M P G F AA S ++ Q+P L
Sbjct: 1485 GMTPAAGSMTPYDRSPVYEGGFRAEAAAFSPLVMAGADETSQFSYRATLGQSPLGAGLGG 1544
Query: 1727 AT--HQSRDKAFAPSELFLSPDSRY------PYIRELITLCSHSSF 1764
A+ + A++P+ F+ Y P+I + + S F
Sbjct: 1545 ASPGYAPTSPAYSPTSPFVPTSPGYTSGATSPFITSPLGAGATSPF 1590
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ KI+ F D+ I+++DNAEKL++R R++N+ Q ++D +E+D+FLR
Sbjct: 1223 MSYVASKISEAFQSDIFVIWSEDNAEKLIIRCRVINN-----QSDKDESGNIEEDVFLRK 1277
Query: 61 IEANMLSDMTLQFI 74
+E ML+ ++L+ +
Sbjct: 1278 LENTMLNSISLRGV 1291
>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb18]
Length = 1746
Score = 210 bits (534), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 151/226 (66%), Gaps = 14/226 (6%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI D+K ++D D E D+ L+ +E ++L +TL+G+ I + ++ +
Sbjct: 1258 QVIRIRQIQDTK---QDDDDDDTEYDVTLKKLEGHLLDTLTLRGVAGIERAFI-----NE 1309
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R+ + E G ++ W+LET G++L +VL+ VD RT+SN EI +V G
Sbjct: 1310 KSRVRVLEDGSLHQSSEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFVEILEVFG 1369
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1370 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1429
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1430 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 1475
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 210 bits (534), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 172/266 (64%), Gaps = 23/266 (8%)
Query: 1424 DDSKMQDEE---DAVDKMEDDMFLRCIEANMLSDM--TLQFIRIMNSDDSKMQDEEDAVD 1478
D +K+Q ++ D +DK D F I M SD ++ +R+ D + DE+DA
Sbjct: 1209 DPNKLQSKDITMDFIDKKVQDTFGDFISV-MASDTNASINVLRLRFRD---INDEDDADG 1264
Query: 1479 KMEDD---MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIII---TESGEFKAI 1532
+ E + MFL+ IE +L++ TL+GI I KVY +KK I ++G FK
Sbjct: 1265 ESEQETAVMFLKQIETQLLNEFTLKGIPEISKVY-------AKKYQEIEYDIKTGVFKQT 1317
Query: 1533 AD-WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYG 1591
+D ++LETDG +L K+LS +VD +T SNDI EI VLGIEAVR S+ E+ VL FYG
Sbjct: 1318 SDNFMLETDGVALQKILSVNNVDYKKTVSNDILEILNVLGIEAVRMSLINELRAVLNFYG 1377
Query: 1592 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 1651
+YVNYRHL+ LCDVM +G L AITRHGINR D+G L + SFEETV++L++AA + E D
Sbjct: 1378 IYVNYRHLSTLCDVMCQRGKLTAITRHGINRMDSGPLRKASFEETVEILLEAAVYNETDH 1437
Query: 1652 MRGVSENIIMGQLPRMGTGCFDLLLD 1677
++GV+E I++GQL +GTG FD++LD
Sbjct: 1438 LKGVTEAIMLGQLAPLGTGSFDVVLD 1463
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 210 bits (534), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 146/206 (70%), Gaps = 5/206 (2%)
Query: 1480 MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLET 1539
+E+D+FLR +E ML+ ++L+G++ I +V++ Q D ++ + G K+ +W+LET
Sbjct: 1272 IEEDIFLRQLENTMLNSVSLRGVKDIERVFLL--QHD---KVYFNDEGSIKSKKEWVLET 1326
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
DG +L V+ VD RT+SN E+F VLGIEA R ++ KE+ V++F YVNYRHL
Sbjct: 1327 DGVNLKTVMCIDGVDFRRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFESSYVNYRHL 1386
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALLCD+MT +G LMAITRHGINR DTGALMRCSFEETV++LM+AAA E D G++EN+
Sbjct: 1387 ALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHGIAENV 1446
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGI 1685
+ GQ+ MGTG F++ LD + KD I
Sbjct: 1447 MFGQMAPMGTGAFEVALDIDMLKDAI 1472
Score = 43.9 bits (102), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN+EKL++R R++ D + D ++ E+D+FLR
Sbjct: 1224 MSYVAGRIAESFKTDLFVIWSEDNSEKLIIRCRVLGGGDKEDDDGLGSI---EEDIFLRQ 1280
Query: 61 IEANMLSDMTLQFIR 75
+E ML+ ++L+ ++
Sbjct: 1281 LENTMLNSVSLRGVK 1295
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 210 bits (534), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 144/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI I +V+M + E+GEFK +W+LETD
Sbjct: 1257 EEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSHPD-----ETGEFKQGKEWVLETD 1311
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SND E+ VLGIEA R S+ KE+ V+ F G YVNYRH+A
Sbjct: 1312 GVNLADVMAVPGVDSARTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN++
Sbjct: 1372 LLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVM 1431
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FDL++D
Sbjct: 1432 LGQMAPLGTGSFDLMID 1448
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D + ++ DA E+D L+
Sbjct: 1210 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR-DPKSLDEDADA----EEDQILKR 1264
Query: 61 IEANMLSDMTLQFI 74
IEA+ML ++L+ I
Sbjct: 1265 IEAHMLESISLRGI 1278
>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb03]
Length = 2106
Score = 210 bits (534), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 151/226 (66%), Gaps = 14/226 (6%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI D+K ++D D E D+ L+ +E ++L +TL+G+ I + ++ +
Sbjct: 1258 QVIRIRQIQDTK---QDDDDDDTEYDVTLKKLEGHLLDTLTLRGVAGIERAFI-----NE 1309
Query: 1518 KKRIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R+ + E G ++ W+LET G++L +VL+ VD RT+SN EI +V G
Sbjct: 1310 KSRVRVLEDGSLHQSSEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFVEILEVFG 1369
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1370 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1429
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1430 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 1475
>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
Length = 1761
Score = 210 bits (534), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D+ K +ED K+EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRTDNEK---DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R++ + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVEDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +D+ K +ED K+EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAIIFSDNNADEQVIRIRTIRTDNEK---DEDGEKKIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 210 bits (534), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 146/206 (70%), Gaps = 5/206 (2%)
Query: 1480 MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLET 1539
+E+D+FLR +E ML+ ++L+G++ I +V++ Q D ++ + G K+ +W+LET
Sbjct: 1269 IEEDIFLRQLENTMLNSVSLRGVKDIERVFLL--QHD---KVYFNDEGSIKSKKEWVLET 1323
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
DG +L V+ VD RT+SN E+F VLGIEA R ++ KE+ V++F YVNYRHL
Sbjct: 1324 DGVNLKTVMCIDGVDFRRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFESSYVNYRHL 1383
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALLCD+MT +G LMAITRHGINR DTGALMRCSFEETV++LM+AAA E D G++EN+
Sbjct: 1384 ALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHGIAENV 1443
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGI 1685
+ GQ+ MGTG F++ LD + KD I
Sbjct: 1444 MFGQMAPMGTGAFEVALDIDMLKDAI 1469
Score = 43.9 bits (102), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++ +I F DL I+++DN+EKL++R R++ D + D ++ E+D+FLR
Sbjct: 1221 MSYVAGRIAESFKTDLFVIWSEDNSEKLIIRCRVLGGGDKEDDDGLGSI---EEDIFLRQ 1277
Query: 61 IEANMLSDMTLQFIR 75
+E ML+ ++L+ ++
Sbjct: 1278 LENTMLNSVSLRGVK 1292
>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1750
Score = 209 bits (532), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 152/226 (67%), Gaps = 15/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR +++ D +ED +MEDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1251 IRTVSAGD----KDEDGEGRMEDDVMLKRLEAHLLDTLTLRGVNGVERAFL-----TKGT 1301
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R++ + G AI D W L+T G++L VL+ VD RT++ND+ ++ +V GIE
Sbjct: 1302 RLVESPDGALLAIKDDPRCTQWYLDTSGSALRDVLAVDGVDASRTYTNDLWQVVEVFGIE 1361
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1362 AARSALVKELTNVLAFDGSYVNHRHIALLTDVMTYRGSISAVTRHGINRADTGALMRCSF 1421
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+LLD +
Sbjct: 1422 EETVEILLEAAASGELDDCRGISENVMLGQMAPMGTGNFDVLLDPK 1467
Score = 50.8 bits (120), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR +++ D +ED +MEDD+ L+ +EA
Sbjct: 1223 VAQRIKEEYPTDLAVIFSDNNADEQVIRIRTVSAGD----KDEDGEGRMEDDVMLKRLEA 1278
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEED-AVDKMEDDMFLRCIE 104
++L +TL+ + R + +++ + D A+ ++DD RC +
Sbjct: 1279 HLLDTLTLRGVNGVERAFLTKGTRLVESPDGALLAIKDDP--RCTQ 1322
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 209 bits (532), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/197 (55%), Positives = 146/197 (74%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI I +V+M + SK E+GEFK +W+LETD
Sbjct: 1257 EEDQILKRIEAHMLESISLRGIPGITRVFM-MQHKVSKP----DETGEFKQGKEWVLETD 1311
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SND EI VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 1312 GVNLADVMAVPGVDSTRTYSNDFIEILSVLGIEATRSALYKEILNVIAFDGSYVNYRHMA 1371
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN++
Sbjct: 1372 LLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVM 1431
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FD+++D
Sbjct: 1432 LGQMAPLGTGAFDVMVD 1448
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 7/75 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
M ++EKI+ FG+DL I++DD A+KL++R R++ D K DE DA E+D L+
Sbjct: 1210 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR--DPKTLDEDADA----EEDQILK 1263
Query: 60 CIEANMLSDMTLQFI 74
IEA+ML ++L+ I
Sbjct: 1264 RIEAHMLESISLRGI 1278
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 209 bits (532), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR + +D K +E+ ++EDD+ L+ +EA++L +TL+G+ + + ++
Sbjct: 1255 IRTIRADSEK---DEEGERRIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGT 1306
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ + G A D W L+T G++L VL+ VDP RT++ND+ +I +V GIE
Sbjct: 1307 RLVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIE 1366
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ KE+ VL F G YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1367 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSF 1426
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1427 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 49.3 bits (116), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + +DL IF+D+NA++ V+RIR + +D K +E+ ++EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPNDLAVIFSDNNADEQVIRIRTIRADSEK---DEEGERRIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|157841384|gb|ABV83146.1| RNA polymerase 2 [rhabditoid sp. PDL15]
Length = 587
Score = 209 bits (531), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 118/136 (86%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGIEAIAKVYMHKPTTDDKK 511
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ I+T+ G FK+IA+WLLETDGT+L+KVLSE++VDPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 512 KTIVTQDGSFKSIAEWLLETDGTALLKVLSEQNVDPVRTTSNDICEIFEVLGIEAVRKAI 571
Query: 1580 EKEMNTVLQFYGLYVN 1595
E+EMN V+ F G YVN
Sbjct: 572 EREMNQVISFDGSYVN 587
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+++I++GFG DLN I+ DDNAEKLV R+RI N+D+ K + ++ VDKMEDD+FLRC
Sbjct: 421 MEAIADRIHSGFGGDLNVIYTDDNAEKLVFRLRIANADNDKGEGADEQVDKMEDDVFLRC 480
Query: 61 IEANMLSDMTLQFI 74
+E+NMLSD+TLQ I
Sbjct: 481 VESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N+D+ K + ++ VDKMEDD+FLRC+E+NMLSD+TLQ I
Sbjct: 452 LRIANADNDKGEGADEQVDKMEDDVFLRCVESNMLSDLTLQGI 494
>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1746
Score = 209 bits (531), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 165/258 (63%), Gaps = 21/258 (8%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ DSK D++ D M L+ +EA++L +TL+G+ I + +++ K
Sbjct: 1256 IRMIKQSDSKYDDDDIEEDIM-----LKRLEAHILDTLTLRGVLGIDRAFLN-------K 1303
Query: 1520 RIIITESGEFKAIA--------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
+ + E + + +A +W L+T GTSL +VL+ VDP RT+SN ++F V G
Sbjct: 1304 DVKLFEKPDGRLVASREDKDCEEWYLDTSGTSLKEVLTVPGVDPRRTYSNHFIQVFVVFG 1363
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL D+MT++GHLMAITRHGINR DTGALMRC
Sbjct: 1364 IEAARSALMRELTMVLAFDGSYVNHRHLALLTDIMTSRGHLMAITRHGINRADTGALMRC 1423
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L++AAA E D RG+SEN+++GQL MGTG D+LLD + + I
Sbjct: 1424 SFEETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGEMDVLLDPKMLETVISDNSRM 1483
Query: 1692 GMMGG-PAGMFFGSAATP 1708
G+M G P G AATP
Sbjct: 1484 GLMAGIPVKGGEGGAATP 1501
Score = 42.7 bits (99), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ KI + DL IF+D+NAE+ V+RIR++ DSK D++ D M L+ +EA
Sbjct: 1228 VAIKIKENYPKDLAVIFSDNNAEQQVIRIRMIKQSDSKYDDDDIEEDIM-----LKRLEA 1282
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1283 HILDTLTLRGV 1293
>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
Length = 1782
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 136/197 (69%), Gaps = 5/197 (2%)
Query: 1484 MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD-WLLETDGT 1542
MFL+ + + +++ L+G+ IGKV T + E+GE K D WL+ETDG
Sbjct: 1260 MFLKDFQDRLFNELALKGLHEIGKVTF----TKYNDEVFDPETGEAKQDKDCWLIETDGV 1315
Query: 1543 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1602
+L KVL + ++ RT SNDI EI +VLGIEAVR S+ E+ VL YG+YVNYRHL+ L
Sbjct: 1316 ALQKVLGQEGINYRRTVSNDIIEILKVLGIEAVRMSLINELRFVLSSYGIYVNYRHLSTL 1375
Query: 1603 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1662
CDVMT +G L AITRHGINR D+G L +CSFEETV++L++AA AE D ++G++ENIIMG
Sbjct: 1376 CDVMTQRGILTAITRHGINRVDSGPLRKCSFEETVEILLEAAVFAETDHLKGITENIIMG 1435
Query: 1663 QLPRMGTGCFDLLLDAE 1679
QL GTG F++ +D E
Sbjct: 1436 QLAPYGTGSFEITIDPE 1452
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML +TL+G+E I +V M + D K + + +GE+ + +
Sbjct: 1250 DAEAEAEEDHMLKRIENTMLESITLRGVEDITRVVMM--KYDRK---VPSPTGEYHKVPE 1304
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V+ VDP R ++N +I VLGIEA R ++ KE+ V+ G YV
Sbjct: 1305 WVLETDGVNLAEVMCVPGVDPARIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYV 1364
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L +A A AE D RG
Sbjct: 1365 NYRHMALLVDVMTSQGFLMSVTRHGFNRSDTGALMRCSFEETVEILFEAGAAAELDDCRG 1424
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+++GQ+ +GTG FD+++D E
Sbjct: 1425 VSENVLLGQVAPIGTGAFDVMIDEE 1449
Score = 47.8 bits (112), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNAEKL++R R++ D K D E + E+D L+
Sbjct: 1209 MGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVR--DPKTLDAE---AEAEEDHMLKR 1263
Query: 61 IEANMLSDMTLQFI 74
IE ML +TL+ +
Sbjct: 1264 IENTMLESITLRGV 1277
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 143/203 (70%), Gaps = 5/203 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML +TL+G++ I +V M + D K + +E+GE+ I +
Sbjct: 1250 DAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMM--KYDRK---VPSETGEYHKIPE 1304
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V+S VDP R ++N +I VLGIEA R ++ KE+ V+ G YV
Sbjct: 1305 WVLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYV 1364
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L +A A AE D G
Sbjct: 1365 NYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCSG 1424
Query: 1655 VSENIIMGQLPRMGTGCFDLLLD 1677
VSEN+I+GQ+ +GTG FD+++D
Sbjct: 1425 VSENVILGQMAPIGTGSFDVMID 1447
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNAEKL++R R++ D K D E + E+D L+
Sbjct: 1209 MGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVR--DPKTLDAE---AEAEEDHMLKK 1263
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMED 96
IE ML +TL+ ++ +M D K+ E K+ +
Sbjct: 1264 IENTMLESITLRGVQDITRVVMMKYDRKVPSETGEYHKIPE 1304
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 143/203 (70%), Gaps = 5/203 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML +TL+G++ I +V M + D K + +E+GE+ I +
Sbjct: 1250 DAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMM--KYDRK---VPSETGEYHKIPE 1304
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V+S VDP R ++N +I VLGIEA R ++ KE+ V+ G YV
Sbjct: 1305 WVLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYV 1364
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L +A A AE D G
Sbjct: 1365 NYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCSG 1424
Query: 1655 VSENIIMGQLPRMGTGCFDLLLD 1677
VSEN+I+GQ+ +GTG FD+++D
Sbjct: 1425 VSENVILGQMAPIGTGSFDVMID 1447
Score = 49.7 bits (117), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNAEKL++R R++ D K D E + E+D L+
Sbjct: 1209 MGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVR--DPKTLDAE---AEAEEDHMLKK 1263
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMED 96
IE ML +TL+ ++ +M D K+ E K+ +
Sbjct: 1264 IENTMLESITLRGVQDITRVVMMKYDRKVPSETGEYHKIPE 1304
>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
Length = 1697
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 149/222 (67%), Gaps = 8/222 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI ++ + DEED D E D FL+ + +ML TL+G+ + + +++ +
Sbjct: 1242 IRIRPYKEA-LSDEEDESDGGEMDYFLKIFQQHMLDGCTLRGVPGVERAFIN---EKTHA 1297
Query: 1520 RII----ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1575
RI+ + +S E +W+LET G+SL VL+ VD RT+SN EI +V GIEA
Sbjct: 1298 RIMSDGSLRKSAEDPLCKEWILETSGSSLAAVLAIDGVDASRTYSNQFIEILEVFGIEAT 1357
Query: 1576 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1635
R ++ +E+ VL F G YVN+RHLALL D+MT++G LMA+TRHGINR DTGALMRCSFEE
Sbjct: 1358 RTALLRELTQVLAFDGSYVNHRHLALLIDIMTSRGFLMAVTRHGINRADTGALMRCSFEE 1417
Query: 1636 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
TV++L++AAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1418 TVEILLEAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 1459
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + + +D+ +F+DDN+++ V+RIR + DEED D E D FL+ +
Sbjct: 1216 VADRIKSVYKNDITVMFSDDNSDQPVIRIRPYK---EALSDEEDESDGGEMDYFLKIFQQ 1272
Query: 64 NMLSDMTLQFI 74
+ML TL+ +
Sbjct: 1273 HMLDGCTLRGV 1283
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 145/222 (65%), Gaps = 14/222 (6%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W+L+T+G +L+ V+ DVD RT SN + E+ +VLGIEAVR+S+ E+ V+ F G Y
Sbjct: 1134 EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSY 1193
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
VNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA +AE D +R
Sbjct: 1194 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLR 1253
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFG--------SA 1705
GV+ENI++GQL +GTG L L+ + + IE+ L + M G+ FG +
Sbjct: 1254 GVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYM----EGLDFGMTPSRSPITG 1309
Query: 1706 ATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDS 1747
+PSS ++P T S T+ + ++P+ SP S
Sbjct: 1310 YSPSSPGYSP--TSPGYSPTSPGYSPTSPGYSPTSPTYSPSS 1349
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 144/207 (69%), Gaps = 11/207 (5%)
Query: 1479 KMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD---- 1534
++EDD+ L+ +EA++L +TL+G+ + + ++ R++I + G A D
Sbjct: 1271 RIEDDVMLKRLEAHLLDTLTLRGVPGVERAFL-----TKGTRLVIDDDGAEIAKKDDDKC 1325
Query: 1535 --WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
W L+T G++L +VL+ VDP RT++ND+ +I +V GIEA R ++ KE+ VL F G
Sbjct: 1326 TQWYLDTSGSALREVLAVDGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGS 1385
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
YVN+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSFEETV++L++AAA E D
Sbjct: 1386 YVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDC 1445
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAE 1679
RG+SEN+++GQL MGTG FD+ LD +
Sbjct: 1446 RGISENVMLGQLAPMGTGNFDVFLDPK 1472
Score = 41.6 bits (96), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++++I + DL IF+D+NA++ V+RIR + +DD K +D E ++EDD+ L+ +EA
Sbjct: 1227 VAQRIKEEYPSDLAVIFSDNNADEQVIRIRTIRTDDDKDEDGE---KRIEDDVMLKRLEA 1283
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1284 HLLDTLTLRGV 1294
>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1748
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 140/203 (68%), Gaps = 11/203 (5%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD------ 1534
E D+ L+ +E ++L +TL+G+ I + ++ + K R+ + E G ++
Sbjct: 1283 EYDVTLKKLEGHLLDTLTLRGVAGIERAFI-----NEKSRVRVLEDGSLHQSSEDPLCKE 1337
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LET G++L +VL+ VD RT+SN EI +V GIEA R ++ +E+ VL F G YV
Sbjct: 1338 WVLETSGSALGEVLTIPGVDTTRTYSNQFVEILEVFGIEATRTALLRELTQVLAFDGSYV 1397
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
N+RHLALL DVMT++G LMA+TRHGINR DTGALMRCSFEETV++L+DAAA AE D RG
Sbjct: 1398 NHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCSFEETVEILLDAAAFAELDDCRG 1457
Query: 1655 VSENIIMGQLPRMGTGCFDLLLD 1677
VSEN+I+GQ+ GTG FD+ LD
Sbjct: 1458 VSENLILGQMAPAGTGEFDVYLD 1480
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 207 bits (526), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 145/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI I +V+M + SK E+GEFK +W+LETD
Sbjct: 1257 EEDQILKRIEAHMLESISLRGIPGITRVFM-MQHKVSKP----DETGEFKQGKEWVLETD 1311
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD R +SND EI VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 1312 GVNLADVMAVPGVDSARIYSNDFIEILSVLGIEATRSALYKEILNVIAFDGSYVNYRHMA 1371
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++GHLMAITRHGINR DTGALMRCSFEETV++L+DAAA AE D +G+SEN++
Sbjct: 1372 LLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVM 1431
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FD+++D
Sbjct: 1432 LGQMAPLGTGAFDVMVD 1448
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 7/75 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDE-EDAVDKMEDDMFLR 59
M ++EKI+ FG+DL I++DD A+KL++R R++ D K DE DA E+D L+
Sbjct: 1210 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR--DPKTLDEDADA----EEDQILK 1263
Query: 60 CIEANMLSDMTLQFI 74
IEA+ML ++L+ I
Sbjct: 1264 RIEAHMLESISLRGI 1278
>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
[Botryotinia fuckeliana]
Length = 1742
Score = 206 bits (525), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 164/258 (63%), Gaps = 21/258 (8%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ DSK D++ D M L+ +EA++L +TL+G+ I + +++ K
Sbjct: 1256 IRMIKQSDSKYDDDDIEEDIM-----LKRLEAHILDTLTLRGVLGIDRAFLN-------K 1303
Query: 1520 RIIITESGEFKAIA--------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
+ + E + + +A +W L+T GTSL VL VDP RT+SN ++F+V G
Sbjct: 1304 DVKLFEKPDGRLVASREDKDCEEWYLDTSGTSLKDVLIVPGVDPRRTYSNHFIQVFEVFG 1363
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL D+MT++GHLMAITRHGINR DTGALMRC
Sbjct: 1364 IEAARSALMRELTMVLAFDGSYVNHRHLALLTDIMTSRGHLMAITRHGINRADTGALMRC 1423
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L++AAA E D RG+SEN+++GQL MGTG D+LLD + + I
Sbjct: 1424 SFEETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGEMDVLLDPKMLETVISDNSRM 1483
Query: 1692 GMMGG-PAGMFFGSAATP 1708
G+M G P G AATP
Sbjct: 1484 GLMAGIPVKGSEGGAATP 1501
Score = 42.4 bits (98), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ KI + DL IF+D+NAE+ V+RIR++ DSK D++ D M L+ +EA
Sbjct: 1228 VAIKIKENYPKDLAVIFSDNNAEQQVIRIRMIKQSDSKYDDDDIEEDIM-----LKRLEA 1282
Query: 64 NMLSDMTLQFI 74
++L +TL+ +
Sbjct: 1283 HILDTLTLRGV 1293
>gi|336276273|ref|XP_003352890.1| hypothetical protein SMAC_05005 [Sordaria macrospora k-hell]
gi|380093009|emb|CCC09246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1761
Score = 206 bits (525), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 150/226 (66%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ +DD K +ED +EDD+ L+ +E ++L TL+G+E I + ++ +
Sbjct: 1259 IRVIKADDDK---DEDGNKIIEDDVMLKRLEKHLLDGCTLRGVEGIERAFL-----NKGV 1310
Query: 1520 RIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
++I + G K +W L+T GTSL +VL+ VD RT +ND+ ++ V GIE
Sbjct: 1311 KLIEAKDGSMKHSKVDDDCQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVFGIE 1370
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
R ++ E+ VL F G YVN+RHLALLCDVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1371 GARAALMHELTAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMRCSF 1430
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+LLD +
Sbjct: 1431 EETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGAFDVLLDPK 1476
Score = 48.5 bits (114), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ +I + D+ +F+D+NAE++V+RIR++ +DD K +ED +EDD+ L+
Sbjct: 1228 VEDVAHRIKEVYKKDVAVVFSDNNAEEMVIRIRVIKADDDK---DEDGNKIIEDDVMLKR 1284
Query: 61 IEANMLSDMTLQFI 74
+E ++L TL+ +
Sbjct: 1285 LEKHLLDGCTLRGV 1298
>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1746
Score = 206 bits (524), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 136/198 (68%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF------KAIADWLLET 1539
L+ +EA++L +TL+G+ + + ++ + K R+ E G +W+LET
Sbjct: 1284 LKKLEAHLLDTLTLRGVAGVERAFI-----NEKSRVRTLEDGSLYKNSEDPQCKEWVLET 1338
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G++L VL+ VD RT+SN EI +V GIEA R ++ +E+ VL F G YVN+RHL
Sbjct: 1339 SGSALGDVLAIPGVDATRTYSNQFVEILEVFGIEATRTALLRELTQVLAFDGSYVNHRHL 1398
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALLCDVMT++G LMA+TRHGINR DTGALMRCSFEETV++L+DAAA AE D RGVSEN+
Sbjct: 1399 ALLCDVMTSRGFLMAVTRHGINRADTGALMRCSFEETVEILLDAAAFAELDDCRGVSENL 1458
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1459 ILGQMAPAGTGEFDVYLD 1476
>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1750
Score = 206 bits (524), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 136/198 (68%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF------KAIADWLLET 1539
L+ +EA++L +TL+G+ + + ++ + K R+ E G +W+LET
Sbjct: 1284 LKKLEAHLLDTLTLRGVAGVERAFI-----NEKSRVRTLEDGSLYKNSEDPQCKEWVLET 1338
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G++L VL+ VD RT+SN EI +V GIEA R ++ +E+ VL F G YVN+RHL
Sbjct: 1339 SGSALGDVLAIPGVDATRTYSNQFVEILEVFGIEATRTALLRELTQVLAFDGSYVNHRHL 1398
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALLCDVMT++G LMA+TRHGINR DTGALMRCSFEETV++L+DAAA AE D RGVSEN+
Sbjct: 1399 ALLCDVMTSRGFLMAVTRHGINRADTGALMRCSFEETVEILLDAAAFAELDDCRGVSENL 1458
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1459 ILGQMAPAGTGEFDVYLD 1476
>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides immitis
RS]
Length = 1750
Score = 206 bits (524), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 136/198 (68%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF------KAIADWLLET 1539
L+ +EA++L +TL+G+ + + ++ + K R+ E G +W+LET
Sbjct: 1284 LKKLEAHLLDTLTLRGVAGVERAFI-----NEKSRVRTLEDGSLYKNSEDPQCKEWVLET 1338
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G++L VL+ VD RT+SN EI +V GIEA R ++ +E+ VL F G YVN+RHL
Sbjct: 1339 SGSALGDVLAIPGVDATRTYSNQFVEILEVFGIEATRTALLRELTQVLAFDGSYVNHRHL 1398
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALLCDVMT++G LMA+TRHGINR DTGALMRCSFEETV++L+DAAA AE D RGVSEN+
Sbjct: 1399 ALLCDVMTSRGFLMAVTRHGINRADTGALMRCSFEETVEILLDAAAFAELDDCRGVSENL 1458
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1459 ILGQMAPAGTGEFDVYLD 1476
>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
Length = 1747
Score = 206 bits (524), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 152/226 (67%), Gaps = 14/226 (6%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI D K +++ D E D+ L+ +E+++L +TL+G+ + + ++ +
Sbjct: 1210 QVIRIRQIQDPK---QDEDDDDTEYDVTLKKLESHLLDTLTLRGVAGVERAFI-----NE 1261
Query: 1518 KKRIIITESGE-FKAIAD-----WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R+ E G +K+ D W+LET G++L VL+ VD RT+SN EI +V G
Sbjct: 1262 KSRVRQVEDGSLYKSAEDPQCKEWVLETSGSALGDVLALPGVDSTRTYSNQFIEILEVFG 1321
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALLCDVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1322 IEATRTALLRELTQVLAFDGSYVNHRHLALLCDVMTSRGFLMAVTRHGINRADTGALMRC 1381
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1382 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 1427
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 206 bits (524), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 143/202 (70%), Gaps = 5/202 (2%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+DMFL+ IE +L + L GI I +V++ K+++I+++GE+ +W LETDG
Sbjct: 1269 EDMFLKRIEGTLLDQVELGGITGITRVFI-----SEGKQVVISQNGEYDQQKEWFLETDG 1323
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L +V++ V+ RT+SN+ E+++ LGIEA R ++ KE+N V++ G YVNYRHLAL
Sbjct: 1324 INLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRHLAL 1383
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCD+M +KG LM+ITRHGINR D GAL R +FEETV++L++AAA + D +GV+EN+++
Sbjct: 1384 LCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGDIDDCKGVAENVLL 1443
Query: 1662 GQLPRMGTGCFDLLLDAEKCKD 1683
GQ+ MGTG FD+ LD KD
Sbjct: 1444 GQMAPMGTGAFDVSLDMNMLKD 1465
Score = 40.8 bits (94), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 13 GDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQ 72
G D+ I ++DNA KLV+RIR++ ++ +DEE D +DMFL+ IE +L + L
Sbjct: 1235 GKDVFVIHSEDNAPKLVIRIRVV----AEKEDEELLGD---EDMFLKRIEGTLLDQVELG 1287
Query: 73 FI----RIMNSDDSKMQDEEDAVDKMEDDMFL 100
I R+ S+ ++ ++ + + FL
Sbjct: 1288 GITGITRVFISEGKQVVISQNGEYDQQKEWFL 1319
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 143/202 (70%), Gaps = 5/202 (2%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+DMFL+ IE +L + L GI I +V++ K+++++++GE+ +W LETDG
Sbjct: 1269 EDMFLKRIEGTLLDQVELGGITGITRVFI-----SEGKQVVVSQNGEYDQEKEWFLETDG 1323
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L +V++ V+ RT+SN+ E+++ LGIEA R ++ KE+N V++ G YVNYRHLAL
Sbjct: 1324 INLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRHLAL 1383
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCD+M +KG LM+ITRHGINR D GAL R +FEETV++L++AAA + D +GV+EN+++
Sbjct: 1384 LCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGDVDDCKGVAENVLL 1443
Query: 1662 GQLPRMGTGCFDLLLDAEKCKD 1683
GQ+ MGTG FD+ LD KD
Sbjct: 1444 GQMAPMGTGAFDVSLDMNMLKD 1465
Score = 43.5 bits (101), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
++AI+E + G D+ I ++DNA KLV+RIR++ ++ +DEE D +DMFL+
Sbjct: 1227 VDAIAETV----GKDVFVIHSEDNAPKLVIRIRVV----AEKEDEELLGD---EDMFLKR 1275
Query: 61 IEANMLSDMTLQFI----RIMNSDDSKMQDEEDAVDKMEDDMFL 100
IE +L + L I R+ S+ ++ ++ E + FL
Sbjct: 1276 IEGTLLDQVELGGITGITRVFISEGKQVVVSQNGEYDQEKEWFL 1319
>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
VdLs.17]
Length = 1755
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 162/267 (60%), Gaps = 32/267 (11%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI K D+E K+EDD+ L+ E ++L +TL+G+ I + ++ +
Sbjct: 1249 QVIRIRTIKPDKGGDDES---KVEDDVMLKQFETHLLDTLTLRGVLGIERAFL-----NK 1300
Query: 1518 KKRIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
+ ++I T+ G A +W L+T GTSL VL VD RT++N + +I +V G
Sbjct: 1301 ETKLIETDDGALLAAKADDRCQEWYLDTSGTSLSSVLMVEGVDATRTYTNHLWQINEVFG 1360
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRC
Sbjct: 1361 IEAARGALVRELTQVLAFDGSYVNHRHLALLVDVMTYRGGISAVTRHGINRADTGALMRC 1420
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE----- 1686
SFEETV++L++AAA E D RG+SEN+++GQ+ MGTG F++LLD + + I
Sbjct: 1421 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEVLLDPKMLETVISDNSRM 1480
Query: 1687 -----IPLATGMMGGPAGMFFGSAATP 1708
+P+ G MGG AATP
Sbjct: 1481 GLVPGMPVKGGEMGG--------AATP 1499
Score = 47.0 bits (110), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ +I A + +D N +F+D+NA++ V+RIR + D K D+E K+EDD+ L+
Sbjct: 1222 VEDVASRIKADYPNDCNLVFSDNNADEQVIRIRTIKPD--KGGDDE---SKVEDDVMLKQ 1276
Query: 61 IEANMLSDMTLQFI 74
E ++L +TL+ +
Sbjct: 1277 FETHLLDTLTLRGV 1290
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae DBVPG#7215]
Length = 1743
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 142/203 (69%), Gaps = 5/203 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML +TL+G++ I +V M + D K + E+GE+ + +
Sbjct: 1250 DAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMM--KYDRK---VPNETGEYHKVPE 1304
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ VDP R ++N +I VLGIEA R ++ +E+ V+ G YV
Sbjct: 1305 WVLETDGVNLSEVMTVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYV 1364
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L +A A AE D G
Sbjct: 1365 NYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGASAELDDCNG 1424
Query: 1655 VSENIIMGQLPRMGTGCFDLLLD 1677
VSEN+I+GQ+ +GTG FD+++D
Sbjct: 1425 VSENVILGQMAPIGTGAFDVMID 1447
Score = 47.8 bits (112), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNAE L++R R++ D K D E + E+D L+
Sbjct: 1209 MGQVGEKIKETFKNDLFVIWSEDNAENLIIRCRVVR--DPKTLDAE---AEAEEDHMLKK 1263
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMED 96
IE ML +TL+ ++ +M D K+ +E K+ +
Sbjct: 1264 IENTMLESITLRGVQDITRVVMMKYDRKVPNETGEYHKVPE 1304
>gi|156835819|ref|XP_001642173.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM 70294]
gi|156112609|gb|EDO14315.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM 70294]
Length = 1311
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 145/205 (70%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML +TL+G+E I +V M + D K + +E+G ++ + +
Sbjct: 931 DAETEAEEDHMLKKIENTMLESITLRGVEDIERVVMM--KYDRK---MPSENGAYEKVPE 985
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L++V++ VDP R ++N +I +VLGIEA R ++ +E+ V+ G YV
Sbjct: 986 WVLETDGVNLLEVMTVTGVDPTRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYV 1045
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1046 NYRHMALLVDVMTTQGSLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1105
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1106 VSENVILGQMAPVGTGAFDVMIDEE 1130
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNA+KL++R R++ DA + E+D L+
Sbjct: 891 MGQVGEKIKETFKNDLFVIWSEDNADKLIIRCRVVRPKSL------DAETEAEEDHMLKK 944
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 115
IE ML +TL+ + +M D KM E A +K+ + L N+L MT+
Sbjct: 945 IENTMLESITLRGVEDIERVVMMKYDRKMPSENGAYEKV-PEWVLETDGVNLLEVMTVTG 1003
Query: 116 I 116
+
Sbjct: 1004 V 1004
>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium albo-atrum
VaMs.102]
gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium albo-atrum
VaMs.102]
Length = 1756
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 162/267 (60%), Gaps = 32/267 (11%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q IRI K D+E K+EDD+ L+ E ++L +TL+G+ I + ++ +
Sbjct: 1249 QVIRIRTIKPDKGGDDES---KVEDDVMLKQFETHLLDTLTLRGVLGIERAFL-----NK 1300
Query: 1518 KKRIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
+ ++I T+ G A +W L+T GTSL VL VD RT++N + +I +V G
Sbjct: 1301 ETKLIETDDGALLAAKADDRCQEWYLDTSGTSLSSVLMVEGVDATRTYTNHLWQINEVFG 1360
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRC
Sbjct: 1361 IEAARGALVRELTQVLAFDGSYVNHRHLALLVDVMTYRGGISAVTRHGINRADTGALMRC 1420
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE----- 1686
SFEETV++L++AAA E D RG+SEN+++GQ+ MGTG F++LLD + + I
Sbjct: 1421 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEVLLDPKMLETVISDNSRM 1480
Query: 1687 -----IPLATGMMGGPAGMFFGSAATP 1708
+P+ G MGG AATP
Sbjct: 1481 GLVPGMPVKGGEMGG--------AATP 1499
Score = 47.0 bits (110), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ +I A + +D N +F+D+NA++ V+RIR + D K D+E K+EDD+ L+
Sbjct: 1222 VEDVASRIKADYPNDCNLVFSDNNADEQVIRIRTIKPD--KGGDDE---SKVEDDVMLKQ 1276
Query: 61 IEANMLSDMTLQFI 74
E ++L +TL+ +
Sbjct: 1277 FETHLLDTLTLRGV 1290
>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1761
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 149/226 (65%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ +DD K +ED +EDD+ L+ +E ++L TL+G+E I + ++ +
Sbjct: 1259 IRVIKADDDK---DEDGNKIIEDDVMLKRLEKHLLDGCTLRGVEGIERAFL-----NKGV 1310
Query: 1520 RIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
++I + G K +W L+T GTSL +VL+ VD RT +ND+ ++ V GIE
Sbjct: 1311 KLIEAKDGSMKHSKVDDECQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVFGIE 1370
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
R ++ E+ VL F G YVN+RHLALLCDVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1371 GARAALMHELTAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMRCSF 1430
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+ LD +
Sbjct: 1431 EETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGAFDVFLDPK 1476
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ +I + D+ +F+D+NAE++V+RIR++ +DD K +ED +EDD+ L+
Sbjct: 1228 VEDVAHRIKEVYKKDVAVVFSDNNAEEMVIRIRVIKADDDK---DEDGNKIIEDDVMLKR 1284
Query: 61 IEANMLSDMTLQFI 74
+E ++L TL+ +
Sbjct: 1285 LEKHLLDGCTLRGV 1298
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
118893]
Length = 1748
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 159/257 (61%), Gaps = 15/257 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q +RI D K +++ D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1257 QVVRIRQIQDPK---QDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIDRAFI-----NE 1308
Query: 1518 KKRIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R + E G A +W+LET G++L VL+ +D RT+SN EI +V G
Sbjct: 1309 KSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFG 1368
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1369 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1428
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD +
Sbjct: 1429 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVVSSNAGL 1488
Query: 1692 GMMG-GPAGMFFGSAAT 1707
G MG P GM AAT
Sbjct: 1489 GAMGEEPKGMLSDGAAT 1505
>gi|85111774|ref|XP_964097.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
gi|28925863|gb|EAA34861.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
Length = 1752
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 149/226 (65%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ +DD K +ED +EDD+ L+ +E ++L TL+G+E I + ++ +
Sbjct: 1259 IRVIKADDDK---DEDGNKIIEDDVMLKRLEKHLLDGCTLRGVEGIERAFL-----NKGV 1310
Query: 1520 RIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
++I + G K +W L+T GTSL +VL+ VD RT +ND+ ++ V GIE
Sbjct: 1311 KLIEAKDGSMKHSKVDDECQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVFGIE 1370
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
R ++ E+ VL F G YVN+RHLALLCDVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1371 GARAALMHELTAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMRCSF 1430
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+ LD +
Sbjct: 1431 EETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGAFDVFLDPK 1476
Score = 48.5 bits (114), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ +I + D+ +F+D+NAE++V+RIR++ +DD K +ED +EDD+ L+
Sbjct: 1228 VEDVAHRIKEVYKKDVAVVFSDNNAEEMVIRIRVIKADDDK---DEDGNKIIEDDVMLKR 1284
Query: 61 IEANMLSDMTLQFI 74
+E ++L TL+ +
Sbjct: 1285 LEKHLLDGCTLRGV 1298
>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
Length = 1635
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 159/257 (61%), Gaps = 15/257 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q +RI D K +++ D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1148 QVVRIRQIQDPK---QDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIDRAFI-----NE 1199
Query: 1518 KKRIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R + E G A +W+LET G++L VL+ +D RT+SN EI +V G
Sbjct: 1200 KSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFG 1259
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1260 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1319
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD +
Sbjct: 1320 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVVSNNAGL 1379
Query: 1692 GMMG-GPAGMFFGSAAT 1707
G MG P GM AAT
Sbjct: 1380 GAMGEEPKGMLSDGAAT 1396
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 204 bits (519), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 145/205 (70%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML +TL+G+E I +V M + D K + +E+GE++ + +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLESITLRGVEDIERVVMM--KYDRK---MPSETGEYQKVPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +LM+V++ VD R ++N +I +VLGIEA R ++ +E+ V+ G YV
Sbjct: 1304 WVLETDGVNLMEVMTVPGVDGSRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 48.1 bits (113), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL+ I+++DNA+KL++R R++ DA + E+D L+
Sbjct: 1209 MVQVGEKIKETFRNDLSVIWSEDNADKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 115
IE ML +TL+ + +M D KM E K+ + L N++ MT+
Sbjct: 1263 IENTMLESITLRGVEDIERVVMMKYDRKMPSETGEYQKV-PEWVLETDGVNLMEVMTVPG 1321
Query: 116 I 116
+
Sbjct: 1322 V 1322
>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton equinum
CBS 127.97]
Length = 1712
Score = 204 bits (519), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 159/257 (61%), Gaps = 15/257 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q +RI D K +++ D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1225 QVVRIRQIQDPK---QDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIDRAFI-----NE 1276
Query: 1518 KKRIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R + E G A +W+LET G++L VL+ +D RT+SN EI +V G
Sbjct: 1277 KSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFG 1336
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1337 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1396
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD +
Sbjct: 1397 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVVSNNAGL 1456
Query: 1692 GMMG-GPAGMFFGSAAT 1707
G MG P GM AAT
Sbjct: 1457 GAMGEEPKGMLSDGAAT 1473
>gi|294876122|ref|XP_002767562.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239869222|gb|EER00280.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1667
Score = 204 bits (519), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 144/206 (69%), Gaps = 4/206 (1%)
Query: 1478 DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLL 1537
D ED L+ +E ++LSD+TL+GI + K YM + D++ + ++ G F +W+L
Sbjct: 1308 DGEEDFRLLKKVEGSLLSDLTLKGIPGVTKCYM---RQDNRVQYS-SDVGTFARSREWVL 1363
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
+TDG +L +VL+ VD RTFSNDI EI VLGIEA RK++ E+ V+ F G YVNYR
Sbjct: 1364 DTDGCNLEQVLTMEAVDSTRTFSNDIVEILNVLGIEACRKALLNELRQVISFDGSYVNYR 1423
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
H+++LCD M KGHLM+ITRHGINR + G LMR SFEE V++LMDAA +AE D MRGVSE
Sbjct: 1424 HMSVLCDTMCQKGHLMSITRHGINRVERGPLMRSSFEEMVEMLMDAACYAETDHMRGVSE 1483
Query: 1658 NIIMGQLPRMGTGCFDLLLDAEKCKD 1683
NI++GQL +GT +LL+D +K D
Sbjct: 1484 NIMLGQLAPIGTAECELLIDTDKLVD 1509
Score = 45.1 bits (105), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM-------------QDEEDAVD 50
+ +KI +G D+ CI +DDN+E L++RIR++ + + + D
Sbjct: 1249 VGQKIVEDYGGDVQCIVSDDNSENLIVRIRLLRDTEVVLSLSLLLYNDRVFNRPRRTDYD 1308
Query: 51 KMEDDMFLRCIEANMLSDMTLQFI 74
ED L+ +E ++LSD+TL+ I
Sbjct: 1309 GEEDFRLLKKVEGSLLSDLTLKGI 1332
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 204 bits (519), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1094 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1148
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1149 WVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1208
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1209 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1268
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1269 VSENVILGQMAPIGTGAFDVMIDEE 1293
Score = 42.7 bits (99), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1054 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1107
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1108 IENTMLENITLRGV 1121
>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
10762]
Length = 1789
Score = 204 bits (519), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 162/262 (61%), Gaps = 21/262 (8%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+R++ KM ++ED VD+ +DM LR +E++ML + L+G++ + + ++
Sbjct: 1265 VRLLQRGAGKMDEDED-VDESPEDM-LRRLESHMLDSVALRGVKNVKRCFV-------SS 1315
Query: 1520 RIIITESGEFKAIA--------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
++ E + + +WLL+TDG +L + LS VDP RT N EIF+ G
Sbjct: 1316 ETVMREKPDGSLVKSKSDDLCKEWLLDTDGFNLKETLSVTGVDPTRTTCNHFGEIFRCFG 1375
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E++ VL G YVNYRH+A+LCDVM A+G LMA+TRHGINR DTGALMRC
Sbjct: 1376 IEATRAALMRELSAVLTGDGSYVNYRHMAILCDVMCARGTLMAVTRHGINRADTGALMRC 1435
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI--PL 1689
SFEETV++L +AA+ E D RGVSENII+GQL GTG FD+LLD E K + P+
Sbjct: 1436 SFEETVEILFEAASSGELDDCRGVSENIILGQLAPSGTGEFDILLDQEMLKTVVSAQRPI 1495
Query: 1690 ATGMMGGPAGMFFGSAATPSSM 1711
MG + M AATP M
Sbjct: 1496 GAAAMGAASPM--DGAATPYDM 1515
Score = 50.4 bits (119), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
+ I FG D +F+DDNA++ V+R+R++ KM ++ED VD+ +DM LR +E+
Sbjct: 1237 VGHAIKEHFGQDTAVVFSDDNADEQVVRVRLLQRGAGKMDEDED-VDESPEDM-LRRLES 1294
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDA--VDKMEDDM 98
+ML + L+ + R S ++ M+++ D V DD+
Sbjct: 1295 HMLDSVALRGVKNVKRCFVSSETVMREKPDGSLVKSKSDDL 1335
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 204 bits (519), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 159/257 (61%), Gaps = 15/257 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q +RI D K +++ D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1257 QVVRIRQIQDPK---QDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIDRAFI-----NE 1308
Query: 1518 KKRIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R + E G A +W+LET G++L VL+ +D RT+SN EI +V G
Sbjct: 1309 KSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFG 1368
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1369 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1428
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD +
Sbjct: 1429 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVVSNNAGL 1488
Query: 1692 GMMG-GPAGMFFGSAAT 1707
G MG P GM AAT
Sbjct: 1489 GAMGEEPKGMLSDGAAT 1505
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 204 bits (519), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 159/257 (61%), Gaps = 15/257 (5%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q +RI D K +++ D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1257 QVVRIRQIQDPK---QDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIDRAFI-----NE 1308
Query: 1518 KKRIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R + E G A +W+LET G++L VL+ +D RT+SN EI +V G
Sbjct: 1309 KSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFG 1368
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1369 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1428
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD +
Sbjct: 1429 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVVSNNAGL 1488
Query: 1692 GMMG-GPAGMFFGSAAT 1707
G MG P GM AAT
Sbjct: 1489 GAMGEEPKGMLSDGAAT 1505
>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
Length = 1685
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 171/318 (53%), Gaps = 57/318 (17%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + +++GEF+ + +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSKTGEFQKVPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ VD R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLAEVMTIPGVDTTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTCQGGLTSVTRHGFNRANTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEK---------------CKDGIEIPLAT-------- 1691
VSEN+++GQ+ +GTG F +++D E ++G P AT
Sbjct: 1424 VSENVLLGQMAPIGTGAFGVMIDEESLVKYMPEQKITELEDGQEGGATPYATDSGLANTD 1483
Query: 1692 -------------------GMMGG---PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATH 1729
M GG G +G A +P TP++ +
Sbjct: 1484 VDIKDELMFSPLVDSGASDAMAGGFTAYGGADYGGATSPFGAYGT---TPNSPGFGGVS- 1539
Query: 1730 QSRDKAFAPSELFLSPDS 1747
F+P+ SP S
Sbjct: 1540 ---SPGFSPTSPTYSPTS 1554
Score = 45.8 bits (107), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F DL I+++DNAEKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKETFKKDLFVIWSEDNAEKLIIRCRVVRPKGL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
Length = 1726
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 50/310 (16%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K I SG ++ + +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---IPGTSGAYEKVPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L++V++ VD R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLLEVMTVPGVDASRIYTNSFIDITEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTNGSLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEK---------------CKDGIEIPLAT-------- 1691
VSEN+I+GQ+ +GTG FD+++D E + G E P ++
Sbjct: 1424 VSENVILGQMAPIGTGSFDVMIDEESLVKYMPEQKVSELADGQAGGETPYSSDAGLVNTE 1483
Query: 1692 -------------------GMMGG---PAGMFFGSAATPSSMIHNPLQTPHNTSLTNATH 1729
M GG G +GSA +P + +P S+++
Sbjct: 1484 IDVKDELMFSPLVDSGSTDAMAGGFTAYGGGDYGSATSPFTAYGETPASPGFGSVSSPGF 1543
Query: 1730 QSRDKAFAPS 1739
+ A++P+
Sbjct: 1544 SATSPAYSPT 1553
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNAEKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGEKIRETFRNDLFVIWSEDNAEKLIIRCRVVRP------KALDAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 115
IE ML ++TL+ + +M D K+ A +K+ + L N+L MT+
Sbjct: 1263 IENTMLENITLRGVENIERVVMMKYDRKIPGTSGAYEKV-PEWVLETDGVNLLEVMTVPG 1321
Query: 116 I 116
+
Sbjct: 1322 V 1322
>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
Length = 1738
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 179/335 (53%), Gaps = 49/335 (14%)
Query: 1444 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDD-------MFLRCIEANMLSD 1496
L CI A+ +D + +RI + D DA + D FLR IE NMLSD
Sbjct: 1176 LHCIYADDNADKLVLRVRIRSGGARAGGD--DAAPALGDAEVDDDEWTFLRRIEGNMLSD 1233
Query: 1497 MTLQGIEAIGKVYMHLPQTDSKKRIIITE----SGEFKAIADWLLETDGTSLMKVLSERD 1552
+ L+G+ + KVY+ K+ +T +G +W+LETDGT+L +L +RD
Sbjct: 1234 LRLRGVPRVTKVYI--------KKTKMTRWDPDTGALGGDEEWVLETDGTNLAAILGDRD 1285
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VD RT SNDI EI V+GIE R+++ + + V+ F G YVNYRHLA+LCD M +G L
Sbjct: 1286 VDHTRTCSNDIVEICDVMGIEGTRQALLQMLREVISFDGAYVNYRHLAVLCDTMCFRGSL 1345
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
MAI+RHGINR D+G L+ SFEETV++L +A +A +D + GV+ NI++GQL +G+G
Sbjct: 1346 MAISRHGINRGDSGPLLSASFEETVEILFKSAVYARSDDVDGVTPNIMLGQLAHVGSGVC 1405
Query: 1673 DLLLDAEKCKDGIEIPLA------------------TGMMGGPAGMFFGSAATPSSMIHN 1714
DLLLD + + +E+ G G P+ AA+PS M
Sbjct: 1406 DLLLDTPQLQHAVELEAPDAPAGAAADPATRGAFADAGGFGAPSPAHTPYAASPSGMYGA 1465
Query: 1715 PLQTPHNTSLTNATHQSRDKAFAPS----ELFLSP 1745
+ + AT D +F+PS + LSP
Sbjct: 1466 ------SPARGGATPGWGDASFSPSIGGVQSVLSP 1494
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 12 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD-------MFLRCIEAN 64
+G DL+CI+ DDNA+KLVLR+RI + D DA + D FLR IE N
Sbjct: 1172 YGADLHCIYADDNADKLVLRVRIRSGGARAGGD--DAAPALGDAEVDDDEWTFLRRIEGN 1229
Query: 65 MLSDMTLQFI 74
MLSD+ L+ +
Sbjct: 1230 MLSDLRLRGV 1239
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGANLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 43.9 bits (102), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 115
IE ML ++TL+ + +M D K+ K E + L AN+ MT+
Sbjct: 1263 IENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVK-EPEWVLETDGANLSEVMTVPG 1321
Query: 116 I 116
I
Sbjct: 1322 I 1322
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/199 (50%), Positives = 142/199 (71%), Gaps = 5/199 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IE ML ++TL+G+E I +V M + D K + +E+GE++ I +W+LETD
Sbjct: 1255 EEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSETGEYQKIPEWVLETD 1309
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L +V++ VD R ++N +I +VLGIEA R ++ KE+ V+ G YVNYRH+A
Sbjct: 1310 GVNLSEVMTVPGVDASRIYTNSFIDIMEVLGIEAGRAALYKEVFNVIASDGSYVNYRHMA 1369
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RGVSEN+I
Sbjct: 1370 LLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVI 1429
Query: 1661 MGQLPRMGTGCFDLLLDAE 1679
+GQ+ +GTG FD+++D E
Sbjct: 1430 LGQMAPIGTGAFDVMIDEE 1448
Score = 46.2 bits (108), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNAE+L++R R++ ++ E E+D L+
Sbjct: 1209 MGQVGEKIKETFKNDLFVIWSEDNAEQLIIRCRVVRPKSMDLETE------AEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMED 96
IE ML ++TL+ + +M D K+ E K+ +
Sbjct: 1263 IENTMLENITLRGVENIERVVMMKYDRKVPSETGEYQKIPE 1303
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 204 bits (518), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 99/197 (50%), Positives = 141/197 (71%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IE +ML +TL+G+E I +V M + D K + +E+GE+ + +W+LETD
Sbjct: 1256 EEDHMLKKIENSMLEKITLRGVEDITRVVMM--KYDRK---VPSETGEYHKVPEWVLETD 1310
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L +V++ VD R ++N +I VLGIEA R ++ +E+ V+ G YVNYRH+A
Sbjct: 1311 GVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHMA 1370
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L +A A AE D RGVSEN+I
Sbjct: 1371 LLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVI 1430
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQ+ +GTG FD+++D
Sbjct: 1431 LGQMAPIGTGAFDVMID 1447
Score = 46.6 bits (109), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNAEKL++R R++ D K D + V+ ED M L+
Sbjct: 1209 MGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVIR--DPKTLDAD--VEAEEDHM-LKK 1263
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMED 96
IE +ML +TL+ + +M D K+ E K+ +
Sbjct: 1264 IENSMLEKITLRGVEDITRVVMMKYDRKVPSETGEYHKVPE 1304
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
Length = 1732
Score = 204 bits (518), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 42.7 bits (99), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 42.7 bits (99), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 42.7 bits (99), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit; AltName: Full=RNA polymerase II subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With Substrate
Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 42.7 bits (99), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 42.7 bits (99), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 42.7 bits (99), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS 8797]
Length = 1721
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + ESGE++ + +
Sbjct: 1248 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPNESGEYQKVPE 1302
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LE+DG +L +V+ VD R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1303 WVLESDGVNLAEVMQVPGVDATRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1362
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1363 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGAAAELDDCRG 1422
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+++GQ+ +GTG FD+++D E
Sbjct: 1423 VSENVLLGQMAPIGTGAFDVMIDEE 1447
Score = 47.8 bits (112), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DNAEKL++R R++ DA + E+D L+
Sbjct: 1208 MGQVGERIKETFKNDLFVIWSEDNAEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1261
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMED 96
IE ML ++TL+ + +M D K+ +E K+ +
Sbjct: 1262 IENTMLENITLRGVENIERVVMMKYDRKVPNESGEYQKVPE 1302
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 42.7 bits (99), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
lozoyensis 74030]
Length = 1727
Score = 203 bits (517), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 179/369 (48%), Gaps = 91/369 (24%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ + D K D++ D M L+ +EA++L +TL+G+ + + ++ + +
Sbjct: 1252 IRMIKAGDGKYDDDDIEEDIM-----LKRLEAHILDTLTLRGVPGVDRAFL-----NKET 1301
Query: 1520 RIIITESGEFKA------IADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
++I T G A +W L+T GTSL +VL+ VD RT++N ++ +V GIE
Sbjct: 1302 KLITTPDGGLLASKSDDRCTEWYLDTSGTSLAQVLTVPGVDTTRTYTNHFIQVLEVFGIE 1361
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ +E+ VL F G YVN+RHLALL DVMT++G LMAITRHGINR DTGALMRCSF
Sbjct: 1362 AARSALMRELTQVLAFDGSYVNHRHLALLVDVMTSRGLLMAITRHGINRADTGALMRCSF 1421
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA--------------- 1678
EETV++L++AAA E D RG+SEN+++GQL MGTG ++LLD
Sbjct: 1422 EETVEILLEAAAIGELDDCRGISENVMLGQLAPMGTGELEVLLDPVMLDTVISDNGRMNL 1481
Query: 1679 -----EKCKDGIEIPLATG--------------MMGG----------------------- 1696
K DG P G GG
Sbjct: 1482 VPGLQAKGADGAATPYDNGSPMNEAGYMGSSPDYTGGGFSPVQSANPDENRGFATEYGGY 1541
Query: 1697 -----------PAGMF-------FGSAATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAP 1738
P G + FG+ +P +P +P + +T+ AF P
Sbjct: 1542 GSGIGTPNPRSPGGGWSPVSPNTFGTPTSPGYSPVSPGYSPTSPGMTSPGFSPSSPAFTP 1601
Query: 1739 SELFLSPDS 1747
+ SP S
Sbjct: 1602 TSPAYSPTS 1610
Score = 44.3 bits (103), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ KI + DL IF+D+NAEK V+RIR++ + D K D++ D M L+
Sbjct: 1221 VEDVAIKIKENYPKDLAVIFSDNNAEKQVIRIRMIKAGDGKYDDDDIEEDIM-----LKR 1275
Query: 61 IEANMLSDMTLQFI 74
+EA++L +TL+ +
Sbjct: 1276 LEAHILDTLTLRGV 1289
>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
bovis]
Length = 1746
Score = 203 bits (517), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/200 (50%), Positives = 142/200 (71%), Gaps = 6/200 (3%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITES-GEFKAIADWLLETDGTS 1543
FL+ + +L ++ L+G+ I KVYM + R E+ G F+ ++ W+L+TDG +
Sbjct: 1276 FLQRFMSQVLVNVKLRGVSKITKVYMR-----EEARTKYNETNGRFERVSQWVLDTDGCN 1330
Query: 1544 LMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLC 1603
L VLS VD ++ SNDI EIF VLGIEA R ++ +E+ V+ F G YVNYRHL+LLC
Sbjct: 1331 LEDVLSIPCVDAQKSISNDISEIFHVLGIEAARMALLRELRAVISFDGSYVNYRHLSLLC 1390
Query: 1604 DVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQ 1663
DVMT KGH+M+ITRHG+NR D G L++CSFEET++ L+DAA AE D ++GV+EN+++GQ
Sbjct: 1391 DVMTQKGHIMSITRHGLNRADRGPLVKCSFEETLEALVDAAVFAELDLLKGVTENVMLGQ 1450
Query: 1664 LPRMGTGCFDLLLDAEKCKD 1683
L MGTG FD+++D EK +D
Sbjct: 1451 LCPMGTGSFDIMIDDEKLRD 1470
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 203 bits (516), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 149/226 (65%), Gaps = 14/226 (6%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q +RI D K +++ D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1257 QVVRIRQIQDPK---QDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIERAFI-----NE 1308
Query: 1518 KKRIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R + E G A +W+LET G++L VL+ +D RT+SN EI +V G
Sbjct: 1309 KSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFG 1368
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT++G LMA+TRHGINR DTGALMRC
Sbjct: 1369 IEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRC 1428
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1429 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLD 1474
>gi|367018612|ref|XP_003658591.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
gi|347005858|gb|AEO53346.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
Length = 1754
Score = 203 bits (516), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 150/226 (66%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ DD K +ED +EDD+ L+ +E ++L + TL+G+ I + ++ +
Sbjct: 1257 IRVIRQDDDK---DEDGNKIIEDDVMLKRLEKHLLDNCTLRGVPGIERAFL-----NKGV 1308
Query: 1520 RIIITESG------EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
++ + G E +W L+T GTSL +VL+ VD RT++ND+ +I V GIE
Sbjct: 1309 KLAVLPDGSQVANKETPECMEWYLDTQGTSLREVLTIEGVDTRRTYTNDLYQIVDVFGIE 1368
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ +E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1369 AARAALMQELTQVLAFGGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSF 1428
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+LLD +
Sbjct: 1429 EETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPK 1474
Score = 48.1 bits (113), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ +I + D+ IF+D+NAE++V+RIR++ DD K +ED +EDD+ L+
Sbjct: 1226 VEDVAARIKEEYKKDVAVIFSDNNAEEMVIRIRVIRQDDDK---DEDGNKIIEDDVMLKR 1282
Query: 61 IEANMLSDMTLQFI 74
+E ++L + TL+ +
Sbjct: 1283 LEKHLLDNCTLRGV 1296
>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
Length = 1737
Score = 202 bits (515), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 169/316 (53%), Gaps = 63/316 (19%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF------KAIADWLLET 1539
L+ +E ++L +TL+G+ I + ++ ++K ++ + E G +W L+T
Sbjct: 1264 LKRLENHLLDTLTLRGVPGIERAFL-----NTKTKVRMKEDGALVMDKKDPLCTEWFLDT 1318
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G++L +VL+ VD RT+SN E+F+V GIEA R ++ +E+ VL F G YVN+RHL
Sbjct: 1319 SGSALGQVLAIPGVDTTRTYSNSFIEVFEVFGIEATRSALMRELTAVLAFDGSYVNHRHL 1378
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT++GH+MAITRHGINR DTGALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1379 ALLVDVMTSRGHIMAITRHGINRADTGALMRCSFEETVEILLEAAACGELDDCRGVSENV 1438
Query: 1660 IMGQLPRMGTGCFDLLLD------------------AEKCKDGIEIPLATGMM------- 1694
++GQL +GTG ++LLD DG P +G
Sbjct: 1439 MLGQLAPLGTGELEILLDQNMLDTLITDNSVGGIGMKGGLADGAATPYDSGSPMQDPGYI 1498
Query: 1695 ---------------GG--PAGM-----FFG----SAATPSSMIHNPLQTPHNTSLTNAT 1728
GG P G FG S +P ++P ++P NTS T+
Sbjct: 1499 GTPDYGASFSPIVNSGGATPPGFTGYHPGFGQGGMSPYSPGGGAYSP-RSPFNTSPTSPG 1557
Query: 1729 HQSRDKAFAPSELFLS 1744
++P+ +S
Sbjct: 1558 FSPTSPGYSPTSPGMS 1573
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 135/198 (68%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA------IADWLLET 1539
L+ +E ++L +TL+G++ + + ++ + K ++ + E G A +W+LET
Sbjct: 1280 LKKLEQHLLDTLTLRGVQGVERAFI-----NEKSKVRVLEDGSLFASKTDPLCKEWVLET 1334
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G+SL +VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1335 SGSSLGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1394
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1395 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1454
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FDL LD
Sbjct: 1455 ILGQMAPAGTGEFDLYLD 1472
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 202 bits (513), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 135/198 (68%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA------IADWLLET 1539
L+ +E ++L +TL+G++ + + ++ + K ++ + E G A +W+LET
Sbjct: 1280 LKKLEQHLLDTLTLRGVQGVERAFI-----NEKSKVRVLEDGSLFASKTDPLCKEWVLET 1334
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G+SL +VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1335 SGSSLGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1394
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1395 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1454
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FDL LD
Sbjct: 1455 ILGQMAPAGTGEFDLYLD 1472
>gi|320586791|gb|EFW99454.1| DNA-directed RNA polymerase 2 largest subunit [Grosmannia clavigera
kw1407]
Length = 1745
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 151/227 (66%), Gaps = 18/227 (7%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+R + DD K DE+ A +EDD+ L+ +E ++L +TL+G+ I + ++ +K
Sbjct: 1261 VRTVRQDDEK--DEDGA---LEDDVMLKRLETHLLDTLTLRGVPGIERAFL------NKD 1309
Query: 1520 RIIITESGEF-------KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1572
++I + A W L+T+G++L VL+ VDP RT++ND+ ++ V GI
Sbjct: 1310 TVLIKTKDDALLAAKDDPACTAWYLDTEGSALRAVLAVDGVDPKRTYTNDLHQVVDVFGI 1369
Query: 1573 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1632
EA R ++ +E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRCS
Sbjct: 1370 EAARSTLLRELTAVLSFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCS 1429
Query: 1633 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
FEETV++L++AAA E D RG+SEN+++GQL MGTG F++LLD +
Sbjct: 1430 FEETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGHFEVLLDPK 1476
Score = 48.9 bits (115), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 10/102 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ +I + DL IF+D+NA+ V+R+R + DD K DE+ A +EDD+ L+
Sbjct: 1230 IEDVANRIKEEYPTDLGVIFSDNNADSQVIRVRTVRQDDEK--DEDGA---LEDDVMLKR 1284
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMEDD 97
+E ++L +TL+ + +N D ++ ++DA+ +DD
Sbjct: 1285 LETHLLDTLTLRGVPGIERAFLNKDTVLIKTKDDALLAAKDD 1326
>gi|396481989|ref|XP_003841371.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
gi|312217945|emb|CBX97892.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
Length = 1875
Score = 201 bits (512), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 153/236 (64%), Gaps = 22/236 (9%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAI---------ADW 1535
++R +E ++L D+ L+G+ I + ++ + D+ R + TE G AI +W
Sbjct: 1409 WMRKLEKHLLDDVALRGVRGIERAFI---REDA--RTVETEDG---AILHSKSDDRCKEW 1460
Query: 1536 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1595
+L+T GT+L KVL VD +T+SN E+ VLGIEA R + KE+ VL F G YVN
Sbjct: 1461 ILDTTGTALAKVLPIEGVDATKTYSNSFIEVLAVLGIEAARAGLLKELGMVLSFDGSYVN 1520
Query: 1596 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGV 1655
+RH+ALL D+MT +G LMAITRHGINR DTGALMRCSFEETV++L++AA H E D RG+
Sbjct: 1521 HRHMALLVDIMTQRGVLMAITRHGINRNDTGALMRCSFEETVEILLEAAGHGELDDCRGI 1580
Query: 1656 SENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPA--GMFF-GSAATP 1708
SENI++GQL MGTG FD+++D +E + MMGG A G + G AATP
Sbjct: 1581 SENIMLGQLAPMGTGEFDIVMDNAMLLTMVED--NSKMMGGTAAGGNYLDGGAATP 1634
>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
strain Muguga]
gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
parva]
Length = 1681
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 136/201 (67%), Gaps = 8/201 (3%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITES--GEFKAIADWLLETDGT 1542
FL ++L + L+G++ I KVYM ++ + S G F ++ W+L+TDG
Sbjct: 1272 FLNKFMTDVLCGIKLRGVKGITKVYMR------EENCVRYNSAVGSFDRVSQWVLDTDGC 1325
Query: 1543 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1602
+L VL VD +TFSND+ EIF V GIEA R+++ +E+ V+ F G YVNYRHL+LL
Sbjct: 1326 NLESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHLSLL 1385
Query: 1603 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1662
CD+MT KG+LM+ITRHGINR D G L++CSFEET++ L+ AA E D ++GV+EN+I+G
Sbjct: 1386 CDIMTQKGYLMSITRHGINRADRGPLIKCSFEETLETLLTAAVFGEVDHLKGVTENVIVG 1445
Query: 1663 QLPRMGTGCFDLLLDAEKCKD 1683
QL GTG FD+++D K +D
Sbjct: 1446 QLSPYGTGAFDIMIDEVKLRD 1466
>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
strain Ankara]
gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
annulata]
Length = 1678
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 137/199 (68%), Gaps = 4/199 (2%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSL 1544
FL ++L + L+G++ I KVYM + ++ R T G F ++ W+L+TDG +L
Sbjct: 1272 FLNKFMTDVLCGIKLRGVKGITKVYM---REENCVRYNST-VGSFDRVSQWVLDTDGCNL 1327
Query: 1545 MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
VL VD +TFSND+ EIF V GIEA R+++ +E+ V+ F G YVNYRHL+LLCD
Sbjct: 1328 ESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCD 1387
Query: 1605 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
+MT KG+LM+ITRHGINR D G L++CSFEET++ L+ AA E D ++GV+EN+I+GQL
Sbjct: 1388 IMTQKGYLMSITRHGINRADRGPLIKCSFEETLETLLTAAVFGEVDHLKGVTENVIVGQL 1447
Query: 1665 PRMGTGCFDLLLDAEKCKD 1683
GTG FD+++D K +D
Sbjct: 1448 SPYGTGAFDIMIDEVKLRD 1466
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 201 bits (511), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 135/198 (68%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA------IADWLLET 1539
L+ +E ++L +TL+G++ + + ++ + K ++ + E G A +W+LET
Sbjct: 1283 LKKLEQHLLDTLTLRGVQGVERAFI-----NEKSKVRVLEDGSLFASKTDPLCKEWVLET 1337
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G+SL +VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1338 SGSSLGEVLAVPGVDASRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1397
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1398 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1457
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FDL LD
Sbjct: 1458 ILGQMAPAGTGEFDLYLD 1475
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 137/198 (69%), Gaps = 6/198 (3%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIII-TESGEFKAIADWLLET 1539
+DD+FL+ IE +L DM L+GI I KV++ QT +R++ E+G F++ +W+L+T
Sbjct: 1304 QDDVFLKRIELALLEDMQLKGIPGIRKVFLR--QT---QRVLFDPEAGSFRSAPEWVLDT 1358
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+GT+L+ VLS DVD RT SN+I E+ QVLGIEA R+++ EM VL F G V YRHL
Sbjct: 1359 EGTALLAVLSHPDVDARRTISNEITEVLQVLGIEAARQALYNEMYAVLSFDGSSVGYRHL 1418
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL +VMT +G L+ ++R GINR +TG LMRC+FEETV++L AA D GVS+ +
Sbjct: 1419 ALLVEVMTCRGMLIPVSRFGINRLETGPLMRCTFEETVEILATAATFGVRDACEGVSQAV 1478
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ ++GTG F L LD
Sbjct: 1479 ILGQRAKVGTGAFSLTLD 1496
Score = 46.2 bits (108), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKME--DDMFLRCI 61
++ ++ A FG DL+ +++DDNAE+LV+ IR+ + K + + E DD
Sbjct: 1222 VARRLRAEFGGDLSVVYSDDNAEQLVMHIRMAGDEYEKGALGVPILGESERLDDTL---- 1277
Query: 62 EANML--SDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 116
N+L DMT + + + DS +E +DD+FL+ IE +L DM L+ I
Sbjct: 1278 --NLLGPGDMTAGGNQSLEALDSGTVEE-------QDDVFLKRIELALLEDMQLKGI 1325
>gi|342878262|gb|EGU79617.1| hypothetical protein FOXB_09900 [Fusarium oxysporum Fo5176]
Length = 1751
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 139/205 (67%), Gaps = 15/205 (7%)
Query: 1483 DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITES--GEFKAIAD------ 1534
D+ L+ +EA++L +TL+G+ I + ++ K +TE G AI D
Sbjct: 1272 DVMLKRLEAHLLDTLTLRGVPGIERAFL-------TKGTRLTEGPDGALLAIKDDPRCTQ 1324
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W L+T GT+L VL+ VD RT++ND+ +I +V GIEA R ++ KE+ VL F G YV
Sbjct: 1325 WYLDTSGTALRDVLAVDGVDATRTYTNDLYQIVEVFGIEAARAALAKELTNVLAFDGSYV 1384
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
N+RH+ALL DVMT +G + A+TRHGINR DTGALMRCSFEETV++L++AAA E D RG
Sbjct: 1385 NHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRG 1444
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
+SEN+++GQ+ MGTG FD+LLD +
Sbjct: 1445 ISENVMLGQMAPMGTGNFDVLLDPK 1469
>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
Length = 1737
Score = 201 bits (510), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 138/198 (69%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF------KAIADWLLET 1539
L+ +E ++L +TL+G+ I + ++ ++K ++ + E G +W L+T
Sbjct: 1264 LKRLENHLLDTLTLRGVPGIERAFL-----NTKTKLRMKEDGALVMDKKDPLCTEWFLDT 1318
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G++L +VL+ VD RT+SN E+F+V GIEA R ++ +E+ VL F G YVN+RHL
Sbjct: 1319 SGSALGQVLAIPGVDTTRTYSNSFIEVFEVFGIEATRSALMRELTAVLAFDGSYVNHRHL 1378
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT++GH+MAITRHGINR DTGALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1379 ALLVDVMTSRGHIMAITRHGINRADTGALMRCSFEETVEILLEAAACGELDDCRGVSENV 1438
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
++GQL +GTG ++LLD
Sbjct: 1439 MLGQLAPLGTGELEILLD 1456
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 200 bits (509), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 97/205 (47%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE++ + +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSATGEYEKVPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +D R ++N +I +VLGIEA R ++ +E+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGIDATRIYTNSFIDIMEVLGIEAGRAALYREVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRASTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+++GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVLLGQMAPIGTGAFDVMIDEE 1448
Score = 46.2 bits (108), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DNAEKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKETFKNDLFVIWSEDNAEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
ATCC 1015]
Length = 1743
Score = 200 bits (508), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 134/198 (67%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA------IADWLLET 1539
L+ +E ++L +TL+G+ + + ++ + K ++ + E G A +W+LET
Sbjct: 1279 LKKLEQHLLDTLTLRGVPGVERAFI-----NEKSKVRVLEDGSLFASKTDPLCKEWVLET 1333
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G+SL +VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1334 SGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1393
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1394 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1453
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1454 ILGQMAPAGTGEFDIYLD 1471
>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus kawachii
IFO 4308]
Length = 1747
Score = 200 bits (508), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 134/198 (67%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA------IADWLLET 1539
L+ +E ++L +TL+G+ + + ++ + K ++ + E G A +W+LET
Sbjct: 1279 LKKLEQHLLDTLTLRGVPGVERAFI-----NEKSKVRVLEDGSLFASKTDPLCKEWVLET 1333
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G+SL +VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1334 SGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1393
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1394 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1453
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1454 ILGQMAPAGTGEFDIYLD 1471
>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
513.88]
gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
Length = 1747
Score = 200 bits (508), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 134/198 (67%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA------IADWLLET 1539
L+ +E ++L +TL+G+ + + ++ + K ++ + E G A +W+LET
Sbjct: 1279 LKKLEQHLLDTLTLRGVPGVERAFI-----NEKSKVRVLEDGSLFASKTDPLCKEWVLET 1333
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G+SL +VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1334 SGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1393
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1394 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1453
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1454 ILGQMAPAGTGEFDIYLD 1471
>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1756
Score = 199 bits (507), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 149/226 (65%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ +D K +ED +EDD+ L+ +E ++L ++TL+G+ I + ++ +
Sbjct: 1258 IRVVRQEDDK---DEDGHKIIEDDVMLKRLEKHLLDNLTLRGVPGIERAFL-----NKGT 1309
Query: 1520 RIIITESGE------FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
++ + G A +W L+T GT+L +VL VD RT +ND+ +I V GIE
Sbjct: 1310 KLAVLPDGSQIANKDHPACQEWYLDTQGTALREVLQIEGVDTRRTSTNDLYQIVDVFGIE 1369
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ +E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1370 AARAALLQELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSF 1429
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+LLD +
Sbjct: 1430 EETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPK 1475
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ KI + D+ IF+D+NAE++V+RIR++ +D K +ED +EDD+ L+
Sbjct: 1227 VEDVAHKIKEEYKKDVAIIFSDNNAEEMVIRIRVVRQEDDK---DEDGHKIIEDDVMLKR 1283
Query: 61 IEANMLSDMTLQFI 74
+E ++L ++TL+ +
Sbjct: 1284 LEKHLLDNLTLRGV 1297
>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
phaseolina MS6]
Length = 1756
Score = 199 bits (507), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 160/257 (62%), Gaps = 18/257 (7%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ D SK ++ E+ +K+ L +E +L D+TL+G+ + + +++ +K
Sbjct: 1254 IRLIKHDSSKEEEGEENDEKL-----LGMLEERLLDDLTLRGVPGVERAFIN----SGQK 1304
Query: 1520 RIIITESGEFKAIAD----WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1575
++ + + A +D W L+T GT+L +VL+ VD RT+SN+ EI QV GIEA
Sbjct: 1305 QVTRDDGTLYMAKSDECTEWFLDTTGTALARVLTVEGVDASRTYSNNFFEIIQVFGIEAT 1364
Query: 1576 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1635
R ++ KE VL F G YVN+RHLALL DVMTA+G +MA+TRHGINR DTGALMRCSFEE
Sbjct: 1365 RTALLKEFTQVLAFDGSYVNHRHLALLVDVMTARGMIMAVTRHGINRADTGALMRCSFEE 1424
Query: 1636 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE----KCKDGIEIPLAT 1691
TV++L+DAAA E D RGVSENI++GQL GTG D+++D E D L
Sbjct: 1425 TVEILLDAAACGELDDCRGVSENIMLGQLAPAGTGEMDIMVDRELLNTLASDNARYGLMP 1484
Query: 1692 GMMGGPAGMFFGSAATP 1708
G+ P G AATP
Sbjct: 1485 GVAAAP-GYIADGAATP 1500
Score = 42.0 bits (97), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ +I + +L IF+D+NAE+LV+RIR++ D SK ++ E+ +K+ L +E
Sbjct: 1226 VATRIKEEYHKNLAVIFSDNNAEELVIRIRLIKHDSSKEEEGEENDEKL-----LGMLEE 1280
Query: 64 NMLSDMTLQFI 74
+L D+TL+ +
Sbjct: 1281 RLLDDLTLRGV 1291
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 199 bits (507), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + ++SGE++ + +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSQSGEYQKVPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ VD R ++N +I +VLGIEA R ++ +E+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGVDATRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L +ITRHG NR TGALMR SFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGALTSITRHGFNRASTGALMRSSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+++GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVLLGQMAPIGTGAFDVMIDEE 1448
Score = 45.8 bits (107), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DNAEKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKETFRNDLFVIWSEDNAEKLIIRCRVVRPKSM------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 199 bits (505), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 132/198 (66%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA------IADWLLET 1539
L+ +E ++L +TL+G+ + + ++ + K ++ + E G +W+LET
Sbjct: 1275 LKKLEQHLLDTLTLRGVPGVDRAFI-----NEKSKVRVVEDGTLHTSKSDPLCKEWVLET 1329
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G+SL VL+ VD RT+SN EIF+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1330 SGSSLAAVLAIPGVDASRTYSNQFIEIFEVFGIEAARTAVLRELTLVLAFDGSYVNHRHL 1389
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1390 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1449
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1450 ILGQMAPAGTGEFDVYLD 1467
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 199 bits (505), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 135/198 (68%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE-FKAIAD-----WLLET 1539
L+ +E ++L +TL+G+ + + ++ + K ++ + E G F + D W+LET
Sbjct: 1280 LKKLEQHLLDTLTLRGVNGVERAFI-----NEKSKVRVLEDGSLFTSKVDPLCKEWVLET 1334
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G++L +VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1335 SGSALGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1394
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1395 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1454
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1455 ILGQMAPAGTGEFDIYLD 1472
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 199 bits (505), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 135/198 (68%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE-FKAIAD-----WLLET 1539
L+ +E ++L +TL+G+ + + ++ + K ++ + E G F + D W+LET
Sbjct: 1280 LKKLEQHLLDTLTLRGVNGVERAFI-----NEKSKVRVLEDGSLFTSKVDPLCKEWVLET 1334
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G++L +VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1335 SGSALGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1394
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1395 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1454
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1455 ILGQMAPAGTGEFDIYLD 1472
>gi|440467914|gb|ELQ37108.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae Y34]
gi|440478660|gb|ELQ59479.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae P131]
Length = 1745
Score = 199 bits (505), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 143/215 (66%), Gaps = 12/215 (5%)
Query: 1472 DEEDAVDK-MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFK 1530
DEED + +E D L+ +E +ML +TL+GI+ I + ++ + R+++ G
Sbjct: 1249 DEEDKDGRNIESDQILKRLEEHMLDGLTLRGIKGIERAFL-----NKDTRLVVKPDGSLL 1303
Query: 1531 AIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
D W L+T GTSL +VL VD VRT +ND+ +I +LGIEA R ++ E+
Sbjct: 1304 NSKDAPECEEWYLDTQGTSLRQVLCVDGVDSVRTLTNDLYQIVDLLGIEAARTALLGELT 1363
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRCSFEETV++L++AA
Sbjct: 1364 QVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAA 1423
Query: 1645 AHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
A E D RG+SEN+++GQL MGTG F++LLD +
Sbjct: 1424 AIGELDDCRGISENVMLGQLAPMGTGAFEVLLDPK 1458
>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
Length = 1756
Score = 199 bits (505), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 149/226 (65%), Gaps = 14/226 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ DD K +ED +EDD+ L+ +E ++L + TL+G+ I + ++ +
Sbjct: 1256 IRVIRQDDDK---DEDGNKIIEDDVMLKRLEKHLLDNCTLRGVPGIERAFL-----NKGT 1307
Query: 1520 RIIITESGEFKAIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
R+++ G A D W L+T GT+L VL+ VD RT +ND+ +I V GIE
Sbjct: 1308 RLVVMPDGSQVANKDTPECMEWYLDTQGTTLRDVLTIDGVDTKRTSTNDLYQIVDVFGIE 1367
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R ++ +E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRCSF
Sbjct: 1368 AARSALMQELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSF 1427
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
EETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+LLD +
Sbjct: 1428 EETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPK 1473
Score = 48.1 bits (113), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++++I + D+ IF+D+NAE++++RIR++ DD K +ED +EDD+ L+
Sbjct: 1225 VEDVAQRIKEEYKKDVAVIFSDNNAEEMIIRIRVIRQDDDK---DEDGNKIIEDDVMLKR 1281
Query: 61 IEANMLSDMTLQFI 74
+E ++L + TL+ +
Sbjct: 1282 LEKHLLDNCTLRGV 1295
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 199 bits (505), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 135/198 (68%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE-FKAIAD-----WLLET 1539
L+ +E ++L +TL+G+ + + ++ + K ++ + E G F + D W+LET
Sbjct: 1281 LKKLEQHLLDTLTLRGVPGVERAFI-----NEKSKVRVLEDGSLFVSKTDPLCKEWVLET 1335
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G+SL +VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1336 SGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1395
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1396 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1455
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG FD+ LD
Sbjct: 1456 ILGQMAPAGTGEFDIYLD 1473
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 199 bits (505), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 138/216 (63%), Gaps = 11/216 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA------IADWLLET 1539
L+ +E ++L +TL+G+ + + ++ + K ++ + E G +W+LET
Sbjct: 1275 LKKLEQHLLDTLTLRGVPGVDRAFI-----NEKSKVRVIEDGTLHTSKSDPLCKEWVLET 1329
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G+SL VL+ VD RT+SN EIF+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1330 SGSSLAAVLTIPGVDASRTYSNQFIEIFEVFGIEAARTAVLRELTLVLAFDGSYVNHRHL 1389
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1390 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1449
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG 1695
I+GQ+ GTG FD+ LD + + G+MG
Sbjct: 1450 ILGQMAPAGTGEFDVYLDQNLLNTVVSSNASYGLMG 1485
>gi|389631979|ref|XP_003713642.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
gi|351645975|gb|EHA53835.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
Length = 1757
Score = 199 bits (505), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 143/215 (66%), Gaps = 12/215 (5%)
Query: 1472 DEEDAVDK-MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFK 1530
DEED + +E D L+ +E +ML +TL+GI+ I + ++ + R+++ G
Sbjct: 1261 DEEDKDGRNIESDQILKRLEEHMLDGLTLRGIKGIERAFL-----NKDTRLVVKPDGSLL 1315
Query: 1531 AIAD------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
D W L+T GTSL +VL VD VRT +ND+ +I +LGIEA R ++ E+
Sbjct: 1316 NSKDAPECEEWYLDTQGTSLRQVLCVDGVDSVRTLTNDLYQIVDLLGIEAARTALLGELT 1375
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRCSFEETV++L++AA
Sbjct: 1376 QVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAA 1435
Query: 1645 AHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
A E D RG+SEN+++GQL MGTG F++LLD +
Sbjct: 1436 AIGELDDCRGISENVMLGQLAPMGTGAFEVLLDPK 1470
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 140/217 (64%), Gaps = 11/217 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE-FKAIAD-----WLLET 1539
L+ +E ++L +TL+G+ + + ++ + K + + E G F++ D W+LET
Sbjct: 1281 LKKLEQHLLDTLTLRGVAGVERAFI-----NEKDNVRVMEDGSLFQSKTDPLCKEWVLET 1335
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G++L VL+ VD RT+SN E+F+V GIEA R +V +E+ VL F G YVN+RHL
Sbjct: 1336 SGSALADVLTIPGVDTSRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHL 1395
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+
Sbjct: 1396 ALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENL 1455
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGG 1696
I+GQL GTG FD+ LD + G+MGG
Sbjct: 1456 ILGQLAPAGTGEFDVYLDQNMLNTVVSSNTGIGLMGG 1492
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 134/201 (66%), Gaps = 17/201 (8%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD---------WL 1536
L+ +E ++L + L+G+ + + ++ + KK+I + E G A+ D W+
Sbjct: 1280 LKKLEQHLLDTLNLRGVPGVERAFI-----NEKKKIRVQEDG---ALTDEQSDPLCREWI 1331
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
LET G+SL +VL+ VD RT+SN E+F+V GIEA R +V +E VL F G YVN+
Sbjct: 1332 LETSGSSLAEVLAIPGVDATRTYSNQFIEVFEVFGIEAARAAVLREFTVVLSFDGSYVNH 1391
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RHLALL DVMT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVS
Sbjct: 1392 RHLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVS 1451
Query: 1657 ENIIMGQLPRMGTGCFDLLLD 1677
EN+I+GQ+ GTG FD+ LD
Sbjct: 1452 ENLILGQMAPAGTGEFDIYLD 1472
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 198 bits (503), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 139/199 (69%), Gaps = 5/199 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ + +W+LETD
Sbjct: 1232 EEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSATGEYHKVPEWVLETD 1286
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L +V++ VD R ++N +I +VLGIEA R ++ KE+ V+ G YVNYRH+A
Sbjct: 1287 GVNLSEVMTVPGVDSKRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMA 1346
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMT +G L ++TRHG NR TGALMRCSFEETV++L +A A AE D RGVSEN+I
Sbjct: 1347 LLVDVMTTQGGLTSVTRHGFNRSATGALMRCSFEETVEILFEAGACAEMDDCRGVSENVI 1406
Query: 1661 MGQLPRMGTGCFDLLLDAE 1679
+GQ+ +GTG FD+++D E
Sbjct: 1407 LGQMAPIGTGSFDVMIDEE 1425
Score = 46.6 bits (109), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNAEKL++R R++ ++ E E+D L+
Sbjct: 1186 MGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVRPKSMDIETE------AEEDHMLKK 1239
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1240 IENTMLENITLRGV 1253
>gi|422727796|gb|AFX61755.2| RNA polymerase I largest subunit, partial [Ascosphaera torchioi]
Length = 1651
Score = 198 bits (503), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 138/198 (69%), Gaps = 11/198 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF-KAIAD-----WLLET 1539
L+ +EA++L +TL+G+ + + ++ + K + + E G K+ AD W+LET
Sbjct: 1194 LKRLEAHLLDTLTLRGVSGVERAFI-----NEKTIVRVLEDGSLRKSSADPFCKEWVLET 1248
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
G++L +VL+ VD RT+SN E+ +V GIEA R ++ +E+ VL F G YVN+RHL
Sbjct: 1249 SGSALAEVLAIPGVDATRTYSNQFSEVLEVFGIEAARAALLRELTQVLAFDGSYVNHRHL 1308
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT+ G +MA+TRHGINR DTGALMRCSFEETV++L+DAAA AE D RGVSEN+
Sbjct: 1309 ALLIDVMTSGGAVMAVTRHGINRTDTGALMRCSFEETVEILLDAAAFAELDDCRGVSENL 1368
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
I+GQ+ GTG F++ LD
Sbjct: 1369 ILGQMAPAGTGEFEVHLD 1386
>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
Length = 1627
Score = 197 bits (502), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 143/210 (68%), Gaps = 9/210 (4%)
Query: 1472 DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII----ITESG 1527
DEE D E D L+ +A+ML TL+G+ + + +++ + RI+ +++S
Sbjct: 1249 DEEG--DGNEMDHTLKIFQAHMLDHCTLRGVSGVERAFIN---EKTHARIMPDGSLSKSA 1303
Query: 1528 EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVL 1587
E +W+LET G++L VL+ VD RT+SN EI +V GIEA R ++ +E+ VL
Sbjct: 1304 EDDQCKEWILETSGSALADVLTIDGVDATRTYSNQFIEILEVFGIEATRTALLRELTQVL 1363
Query: 1588 QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHA 1647
F G YVN+RHLALL D+MT++G LMA+TRHGINR DTGALMRCSFEETV++L++AAA A
Sbjct: 1364 AFDGSYVNHRHLALLIDIMTSRGFLMAVTRHGINRSDTGALMRCSFEETVEILLEAAAFA 1423
Query: 1648 EADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
E D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1424 ELDDCRGVSENLILGQMAPAGTGEFDVYLD 1453
>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
64254]
Length = 1616
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 143/210 (68%), Gaps = 9/210 (4%)
Query: 1472 DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII----ITESG 1527
DEE D E D L+ +A+ML TL+G+ + + +++ + RI+ +++S
Sbjct: 1249 DEEG--DGNEMDHTLKIFQAHMLDHCTLRGVSGVERAFIN---EKTHARIMPDGSLSKSA 1303
Query: 1528 EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVL 1587
E +W+LET G++L VL+ VD RT+SN EI +V GIEA R ++ +E+ VL
Sbjct: 1304 EDDQCKEWILETSGSALADVLTIDGVDATRTYSNQFIEILEVFGIEATRTALLRELTQVL 1363
Query: 1588 QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHA 1647
F G YVN+RHLALL D+MT++G LMA+TRHGINR DTGALMRCSFEETV++L++AAA A
Sbjct: 1364 AFDGSYVNHRHLALLIDIMTSRGFLMAVTRHGINRSDTGALMRCSFEETVEILLEAAAFA 1423
Query: 1648 EADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
E D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1424 ELDDCRGVSENLILGQMAPAGTGEFDVYLD 1453
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 180/298 (60%), Gaps = 16/298 (5%)
Query: 1398 DDMFLR------CIEANMLSDMTLQFI--RIMNSDDSKMQDEEDAVDK-MEDDMFLRCIE 1448
D F+R I+ N S +L+F+ R M S+ M + + + ++D + C
Sbjct: 1157 DQFFIREMLEEKTIDPNTFSPWSLRFVLDREMMSEHLNMSQIANIIKQEFQND--ISCFY 1214
Query: 1449 ANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKV 1508
++ S+ + IRI NS+ SK + E+D D FL+ +E+NMLS ++L+G + KV
Sbjct: 1215 SDDNSEELILIIRIRNSEKSKSETEDDEEDSSMIVEFLKRLESNMLSQLSLKGHNNLKKV 1274
Query: 1509 YMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQ 1568
+ + D + + E K W LET+G L+ V+S VD T SND+ E+ +
Sbjct: 1275 FY---RKDENIKFFSNKGVEKKT--RWSLETEGCDLLSVMSHPQVDFRNTLSNDVIEVEK 1329
Query: 1569 VLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 1628
VLGIEA R + KE+ V++F G YVNYRHLA+LCDVMT G + A+TRHG+ R D G L
Sbjct: 1330 VLGIEACRNLLMKELRKVIEFDGSYVNYRHLAILCDVMTQGGVITAVTRHGLARSDNGPL 1389
Query: 1629 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIE 1686
MRCSFE+TV+VL++AA ++ D ++GVS N+++G+L +GTG FDL+LD + K+ I+
Sbjct: 1390 MRCSFEQTVEVLVEAAQFSDVDTLKGVSANVMVGKLAPIGTGTFDLVLDEQLLKETIQ 1447
Score = 54.3 bits (129), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M I+ I F +D++C ++DDN+E+L+L IRI NS+ SK + E+D D FL+
Sbjct: 1195 MSQIANIIKQEFQNDISCFYSDDNSEELILIIRIRNSEKSKSETEDDEEDSSMIVEFLKR 1254
Query: 61 IEANMLSDMTLQ 72
+E+NMLS ++L+
Sbjct: 1255 LESNMLSQLSLK 1266
>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
Length = 1683
Score = 197 bits (501), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 143/210 (68%), Gaps = 9/210 (4%)
Query: 1472 DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII----ITESG 1527
DEE D E D L+ +A+ML TL+G+ + + +++ + RI+ +++S
Sbjct: 1249 DEEG--DGNEMDHTLKIFQAHMLDHCTLRGVSGVERAFIN---EKTHARIMPDGSLSKSA 1303
Query: 1528 EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVL 1587
E +W+LET G++L VL+ VD RT+SN EI +V GIEA R ++ +E+ VL
Sbjct: 1304 EDDNCKEWILETSGSALADVLAIDGVDATRTYSNQFIEILEVFGIEATRTALLRELTQVL 1363
Query: 1588 QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHA 1647
F G YVN+RHLALL D+MT++G LMA+TRHGINR DTGALMRCSFEETV++L++AAA A
Sbjct: 1364 AFDGSYVNHRHLALLVDIMTSRGFLMAVTRHGINRSDTGALMRCSFEETVEILLEAAAFA 1423
Query: 1648 EADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
E D RGVSEN+I+GQ+ GTG FD+ LD
Sbjct: 1424 ELDDCRGVSENLILGQMAPAGTGEFDVYLD 1453
>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
Length = 1748
Score = 197 bits (501), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 151/230 (65%), Gaps = 21/230 (9%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH-------L 1512
IR++ +D K + D +EDD+ L+ +E ++L TL+G+E I + +++ L
Sbjct: 1255 IRVIRQNDDK---DADGNTIIEDDVMLKRLEKHLLDSCTLRGVEGIERAFLNKTARLLEL 1311
Query: 1513 P---QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
P QT +K + A +W L+T GT+L +VL+ VD RT++ND+ ++ V
Sbjct: 1312 PDGSQTANKDK--------EPACEEWYLDTQGTALREVLTVEGVDTTRTYTNDLYQVVDV 1363
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
GIEA R ++ E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALM
Sbjct: 1364 FGIEAARSALMAELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALM 1423
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
RCSFEETV++L++AAA E D RG+SEN+++GQ+ MGTG F++LLD +
Sbjct: 1424 RCSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEVLLDPK 1473
Score = 42.7 bits (99), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++ I + D+ IF+D+NAE++V+RIR++ +D K + D +EDD+ L+
Sbjct: 1224 VEDVAAAIKQEYKKDVAVIFSDNNAEEMVVRIRVIRQNDDK---DADGNTIIEDDVMLKR 1280
Query: 61 IEANMLSDMTLQFI 74
+E ++L TL+ +
Sbjct: 1281 LEKHLLDSCTLRGV 1294
>gi|408388091|gb|EKJ67784.1| hypothetical protein FPSE_12056 [Fusarium pseudograminearum CS3096]
Length = 1758
Score = 197 bits (500), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 136/200 (68%), Gaps = 11/200 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD------WLLET 1539
L+ +EA++L +TL+G+ I + ++ ++ E G AI D W L+T
Sbjct: 1277 LKRLEAHLLDTLTLRGVPGIERAFL-----TKGTKLTEDEDGALLAIKDDPRCTQWYLDT 1331
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
GT+L VL+ VD RT++ND+ +I +V GIEA R ++ KE+ VL F G YVN+RH+
Sbjct: 1332 SGTALRDVLAVDGVDATRTYTNDLYQIVEVFGIEAARSALAKELTNVLAFDGSYVNHRHI 1391
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G + A+TRHGINR DTGALMRCSFEETV++L++AAA E D RG+SEN+
Sbjct: 1392 ALLVDVMTYRGVISAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRGISENV 1451
Query: 1660 IMGQLPRMGTGCFDLLLDAE 1679
++GQ+ MGTG FD+LLD +
Sbjct: 1452 MLGQMAPMGTGNFDVLLDPK 1471
>gi|222639937|gb|EEE68069.1| hypothetical protein OsJ_26085 [Oryza sativa Japonica Group]
Length = 208
Score = 196 bits (499), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 129/172 (75%), Gaps = 5/172 (2%)
Query: 1493 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
+L++M L+GI I KV++ + + + ++ FKA +W+L+T+G +L+ V+ D
Sbjct: 6 ILTEMALRGIPDINKVFIKYGKVNKFE-----DNVGFKADNEWMLDTEGVNLLAVMCHED 60
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VD RT SN + E+ +VLGIEAVR+++ E+ V+ F G YVNYRHLA+LCD MT +GHL
Sbjct: 61 VDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 120
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
MAITRHGINR DTG LMRCSFEETVD+L+DAA +AE+D +RGV+ENI++G+L
Sbjct: 121 MAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGRL 172
>gi|367052355|ref|XP_003656556.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
gi|347003821|gb|AEO70220.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
Length = 1751
Score = 196 bits (499), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 149/228 (65%), Gaps = 18/228 (7%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ DD K +ED +EDD+ L+ +E ++L TL+G+ I + +++ K
Sbjct: 1252 IRVIRQDDDK---DEDGNKIIEDDVMLKRLEKHLLDHCTLRGVVGIERAFLN-------K 1301
Query: 1520 RIIITESGEFKAIAD--------WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
+ E + +A+ W L+T GT+L +VL+ VD RT +ND+ +I V G
Sbjct: 1302 GTKLVERADGSQVANKDAPECMEWYLDTQGTALREVLTIEGVDTKRTSTNDLYQIVDVFG 1361
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R ++ +E+ VL F G YVN+RHLALL DVMT +G + A+TRHGINR DTGALMRC
Sbjct: 1362 IEAARAALLQELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRC 1421
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
SFEETV++L++AAA E D RG+SEN+++GQ+ MGTG FD+LLD +
Sbjct: 1422 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPK 1469
Score = 48.1 bits (113), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
+E ++++I + D+ IF+D+NAE++V+RIR++ DD K +ED +EDD+ L+
Sbjct: 1221 VEDVAQRIKEEYRKDVAVIFSDNNAEEMVIRIRVIRQDDDK---DEDGNKIIEDDVMLKR 1277
Query: 61 IEANMLSDMTLQFI 74
+E ++L TL+ +
Sbjct: 1278 LEKHLLDHCTLRGV 1291
>gi|299116996|emb|CBN73767.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1904
Score = 196 bits (499), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 113/249 (45%), Positives = 155/249 (62%), Gaps = 7/249 (2%)
Query: 1441 DMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDD--MFLRCIEANMLSDMT 1498
D L I ++ S+ + IR+++ K++ E +A D E D L+ +E N+L +
Sbjct: 1285 DGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDMAEADDVAMLKHLEKNLL-RLQ 1343
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L GI I KVYM ++ K +G + +W+LETDGT+LM L +DP RT
Sbjct: 1344 LSGIAGISKVYM----SEVTKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRT 1399
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
SND+ E VLGIE R S+ KE V++ G YVNYRHL+ L DVMT +GHLMAITRH
Sbjct: 1400 VSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRH 1459
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1678
GINR D G ++R SFEETV++LM+AA AEAD ++GV++NI++GQ +GTG DLLLD
Sbjct: 1460 GINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQFANLGTGTMDLLLDE 1519
Query: 1679 EKCKDGIEI 1687
K +E+
Sbjct: 1520 SKLSQAMEL 1528
Score = 42.7 bits (99), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDD--MFLRCI 61
I++++ A F L+ I +D N+EKLVLRIR+++ K++ E +A D E D L+ +
Sbjct: 1276 IAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDMAEADDVAMLKHL 1335
Query: 62 EANML 66
E N+L
Sbjct: 1336 EKNLL 1340
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 196 bits (499), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 137/196 (69%), Gaps = 4/196 (2%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+D+ LR +E+ +++ + L GI I +VY+ ++ K + T +G + + +LETDG
Sbjct: 1206 EDVILRDVESQLMASLALGGITNIRRVYI----SEQKVAVQNTATGAIEQAQEHILETDG 1261
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L +V++ +VD RT+SN EI+ VLGIEA R ++ KE+ V++F G YVNYRHLAL
Sbjct: 1262 INLREVMAVEEVDFTRTYSNAPLEIYAVLGIEAGRAALLKEIRKVIEFDGSYVNYRHLAL 1321
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
L DVM KG LM+ITRHGINR + GAL R SFEETV++LMDAA E D RGVSENII+
Sbjct: 1322 LVDVMCQKGGLMSITRHGINRTENGALARSSFEETVEILMDAAGSGETDICRGVSENIIL 1381
Query: 1662 GQLPRMGTGCFDLLLD 1677
GQL +GTG FD+LLD
Sbjct: 1382 GQLAPLGTGEFDVLLD 1397
>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1744
Score = 196 bits (498), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 142/216 (65%), Gaps = 9/216 (4%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD-----WLLETD 1540
L+ +E ++L +TL+G+ + + +++ + D+ + ++ + F + AD W+LET
Sbjct: 1281 LKKLEQHLLDTLTLRGVSGVERAFIN--EKDNAR--LMDDGSLFLSKADPLCKEWVLETS 1336
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
GT+L VL+ VD RT+SN E+F+V GIEA R ++ +E+ VL F G YVN+RHLA
Sbjct: 1337 GTALADVLTIPGVDTTRTYSNQFIEVFEVFGIEAARSALLRELTQVLAFDGSYVNHRHLA 1396
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL D+MT +G+L +TRHGINR D GALMRCSFEETV++L++AAA E D RGVSEN+I
Sbjct: 1397 LLVDIMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENLI 1456
Query: 1661 MGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGG 1696
+GQL GTG FD+ LD + G+MGG
Sbjct: 1457 LGQLAPAGTGEFDVYLDQSLLNTVVSSNTGIGLMGG 1492
>gi|78190645|gb|ABB29644.1| DNA-directed RNA polymerase II largest subunit [Suberites fuscus]
Length = 292
Score = 196 bits (498), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/137 (67%), Positives = 110/137 (80%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQGIE I KVYMH P DSKK
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGIEQIAKVYMHYPTQDSKK 215
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI I E GE+KA +W+LETDG +LM+VLSE VDPVRT SN I EIF VLGIEAVRK+V
Sbjct: 216 RISINEDGEYKAYQEWILETDGVNLMRVLSEPLVDPVRTSSNHIVEIFSVLGIEAVRKAV 275
Query: 1580 EKEMNTVLQFYGLYVNY 1596
EKE++ V+ F G YVNY
Sbjct: 276 EKELHHVISFDGSYVNY 292
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 65/74 (87%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKI++ FG+DLNCIFNDDNAEKLVLRIR+M+++D K DEE+ +DKMEDD FLRC
Sbjct: 125 MEQIAEKISSHFGEDLNCIFNDDNAEKLVLRIRLMSNEDKKYDDEEEQLDKMEDDNFLRC 184
Query: 61 IEANMLSDMTLQFI 74
+EAN+LSDM LQ I
Sbjct: 185 LEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IR+M+++D K DEE+ +DKMEDD FLRC+EAN+LSDM LQ I
Sbjct: 156 IRLMSNEDKKYDDEEEQLDKMEDDNFLRCLEANLLSDMALQGI 198
>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum NZE10]
Length = 1773
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 172/330 (52%), Gaps = 69/330 (20%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK-KRIIITESGEFK------AIADWLLE 1538
L+ +EA+ML + L+G+ + + ++ SK R+ G K +WLL+
Sbjct: 1276 LKRLEAHMLDTVVLRGVSGVRRAFV------SKDARLYEAPDGALKFSTQEEKCQEWLLD 1329
Query: 1539 TDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRH 1598
TDG +L +L+ VDP RT N I +V GIEAVR S+ +EM VL G YVN+RH
Sbjct: 1330 TDGVNLKDILAVEGVDPTRTTCNHFQSIMKVFGIEAVRASLMREMKDVLTNDGSYVNHRH 1389
Query: 1599 LALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSEN 1658
+A+LCDVM A+G LMA+TRHGINR DTGALMRCSFEETV++L DAA+ E D RGVSEN
Sbjct: 1390 MAILCDVMCARGELMAVTRHGINRSDTGALMRCSFEETVEILFDAASSGELDDCRGVSEN 1449
Query: 1659 IIMGQLPRMGTGCFDLLLDAEKCK--------------DGIEIPLATGMM-----GGP-- 1697
II+GQL GTG FD+LLD E K G P+ G M G P
Sbjct: 1450 IILGQLAPSGTGEFDMLLDTEMLKTVMPSQRPVQQMAMGGAASPMVEGAMTPYDVGSPMS 1509
Query: 1698 ----AGMFFGSAATPSSMIHNPLQ-----------------TPHNTSLTNATHQSRDKAF 1736
AG +G++ +P I NP Q +P++ ++ +
Sbjct: 1510 ESGFAGPDYGASFSP---IINPGQDEGGGLTAYGGGFSGGMSPYSGGMS--------PGY 1558
Query: 1737 APSELF--LSPDSR-YPYIRELITLCSHSS 1763
AP+ F +SP S Y Y S+S
Sbjct: 1559 APTSPFSGMSPTSPAYGYSPTSPGYGSYSP 1588
>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gibberella zeae PH-1]
Length = 1758
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 137/202 (67%), Gaps = 15/202 (7%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITES--GEFKAIAD------WLL 1537
L+ +EA++L +TL+G+ I + ++ K ++E G AI D W L
Sbjct: 1277 LKRLEAHLLDTLTLRGVPGIERAFL-------TKGTKLSEDDDGALLAIKDDPRCTQWYL 1329
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
+T GT+L VL+ VD RT++ND+ +I +V GIEA R ++ KE+ VL F G YVN+R
Sbjct: 1330 DTSGTALRDVLAVDGVDATRTYTNDLYQIVEVFGIEAARSALAKELTNVLAFDGSYVNHR 1389
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
H+ALL DVMT +G + A+TRHGINR DTGALMRCSFEETV++L++AAA E D RG+SE
Sbjct: 1390 HIALLVDVMTYRGVISAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRGISE 1449
Query: 1658 NIIMGQLPRMGTGCFDLLLDAE 1679
N+++GQ+ MGTG FD+LLD +
Sbjct: 1450 NVMLGQMAPMGTGNFDVLLDPK 1471
>gi|189197231|ref|XP_001934953.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980901|gb|EDU47527.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1742
Score = 194 bits (494), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 151/234 (64%), Gaps = 18/234 (7%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR--IIITESGEFKAIADWLLETDGT 1542
++R +E ++L D+TL+G+ + + ++ +KKR + S +W+L+T GT
Sbjct: 1273 WMRKLEQHLLDDVTLRGVPGVERAFIRE-HCVTKKRDDGSLLHSKSSPECKEWVLDTTGT 1331
Query: 1543 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1602
+L +VLS VD T+SN EI VLGIEA R + KE+ VL F G YVN+RH+ALL
Sbjct: 1332 ALAEVLSIPGVDATTTYSNSFIEILAVLGIEAARAGLLKELGMVLSFDGSYVNHRHMALL 1391
Query: 1603 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1662
D+M +G LMAITRHGINR DTGALMRCSFEETV++L++AA E D RGVSENI++G
Sbjct: 1392 VDIMCQRGVLMAITRHGINRNDTGALMRCSFEETVEILLEAAGFGELDDCRGVSENIMLG 1451
Query: 1663 QLPRMGTGCFDLLLDAEKCKDGIEIPLA---TGMMGGPAGMFFGS-----AATP 1708
QL MGTG FD+++D +G+ + + + MMGG AG G+ AATP
Sbjct: 1452 QLAPMGTGEFDVVMD-----NGMLLTMVEDNSKMMGGAAGA--GTYLSDGAATP 1498
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 194 bits (493), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 154/247 (62%), Gaps = 10/247 (4%)
Query: 1453 SDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHL 1512
++ T+ +R++N D +DEE D+ +D L+ + +ML ++ L+G+ + +V++
Sbjct: 1249 AEQTVVRVRMLNRGD---KDEEG--DESSEDDTLKQLAEHMLDNVILRGVNGVRRVFVSK 1303
Query: 1513 P-QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
Q K +T+ GE +W L+TDG +L KVL+ VD RT N +V G
Sbjct: 1304 ANQIIEKPNGAMTQGGEESV--EWYLDTDGVNLQKVLAVDGVDSARTTCNHFQSTMKVFG 1361
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEAVR S+ EM VL G YVN+RH+A+LCDVM A+G LMA+TRHGINR DTGALMRC
Sbjct: 1362 IEAVRASLMAEMKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRSDTGALMRC 1421
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE--KCKDGIEIPL 1689
SFEETV++L DAA+ E D RGVSENII+GQL GTG FD+LLD+ + P+
Sbjct: 1422 SFEETVEILFDAASSGELDDCRGVSENIILGQLAPSGTGEFDMLLDSNMLSTVTATQRPM 1481
Query: 1690 ATGMMGG 1696
G GG
Sbjct: 1482 QVGAAGG 1488
Score = 41.2 bits (95), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
+++KI + D+ IF+DDNAE+ V+R+R++N D +DEE D+ +D L+ +
Sbjct: 1228 VAQKIKEVYTSDIAVIFSDDNAEQTVVRVRMLNRGD---KDEEG--DESSEDDTLKQLAE 1282
Query: 64 NMLSDMTLQFI 74
+ML ++ L+ +
Sbjct: 1283 HMLDNVILRGV 1293
>gi|378729993|gb|EHY56452.1| DNA-directed RNA polymerase II subunit A [Exophiala dermatitidis
NIH/UT8656]
Length = 1762
Score = 194 bits (493), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 133/191 (69%), Gaps = 11/191 (5%)
Query: 1493 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITE-SGEFKAIAD-----WLLETDGTSLMK 1546
ML +T G+ + + ++ D K R II + + F + +D ++LET G++ K
Sbjct: 1278 MLDHLTFHGVPGVSRAFI-----DQKSRAIIDDDNSVFMSKSDPRCNEYVLETSGSAFAK 1332
Query: 1547 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1606
VL+ VD RT++N EIF+VLGIEA R ++ +E+ VL F G YVN RHL +LCDVM
Sbjct: 1333 VLAIEGVDTTRTYTNRFTEIFEVLGIEATRAAILRELTQVLSFDGSYVNARHLGILCDVM 1392
Query: 1607 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1666
TA+G++MA+TRHGIN+ DTGALMRCSFE+TV++L++AAA E D RGVSEN+I+GQ+
Sbjct: 1393 TARGYVMAVTRHGINKSDTGALMRCSFEQTVEILLEAAAAGELDDCRGVSENLILGQVAP 1452
Query: 1667 MGTGCFDLLLD 1677
+GTG ++LLD
Sbjct: 1453 VGTGAMEILLD 1463
>gi|356605936|gb|AET24999.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 6
KK-2011]
Length = 577
Score = 193 bits (491), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/132 (67%), Positives = 109/132 (82%)
Query: 1463 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRII 1522
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KKR I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAIAKVYMNQPLTDDKKRTI 505
Query: 1523 ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKE 1582
IT G FK+I +WLLETDGT+L++VLSER +DPVRT SNDICEI +VLGIEAVRK++E+E
Sbjct: 506 ITPEGGFKSITEWLLETDGTALLRVLSERQIDPVRTTSNDICEILEVLGIEAVRKAIERE 565
Query: 1583 MNTVLQFYGLYV 1594
M+ V+ F G YV
Sbjct: 566 MDKVISFDGSYV 577
Score = 98.6 bits (244), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I++GFG D++ I+ DDNAEKLV R+RI + DD + +E+ VDKMEDD+FLRC
Sbjct: 413 MEMIADRIHSGFGTDVHTIYTDDNAEKLVFRLRI-SGDDKSAEGQEEQVDKMEDDVFLRC 471
Query: 61 IEANMLSDMTLQFI 74
IEANMLSD+TLQ I
Sbjct: 472 IEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 119 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 161 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 203 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 245 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 287 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 329 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 371 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 413 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 455 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 497 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 539 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 581 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 623 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 665 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 707 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 749 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 791 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 833 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 875 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 917 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 959 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1001 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1043 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1085 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1127 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1169 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1211 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1253 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1295 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1337 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 1379 MNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
++ DD + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I
Sbjct: 446 ISGDDKSAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 485
>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
IPO323]
gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
Length = 1773
Score = 192 bits (489), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 152/261 (58%), Gaps = 37/261 (14%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF------KAIADWLLET 1539
L+ +E +ML + L+G+ + + ++ ++ R+I E G +A +WLL+T
Sbjct: 1275 LKRLEGHMLDTVVLRGVSGVKRAFV-----SNEARMITIEDGSLVKSNSVEACKEWLLDT 1329
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
DG +L VL+ VD RT N I +V GIE VR S+ KE VL G YVN+RH+
Sbjct: 1330 DGVNLKDVLAVEGVDSTRTTCNHFQTIMKVFGIEGVRASLIKEFKDVLTNDGSYVNHRHM 1389
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
A+LCDVM A+G LMA+TRHGINR DTGALMRCSFEETV++L DAA+ E D RGVSENI
Sbjct: 1390 AILCDVMCARGELMAVTRHGINRADTGALMRCSFEETVEILFDAASSGELDDCRGVSENI 1449
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCK----------DGIEIPLAT--GMM-----------GG 1696
I+GQL GTG FD+LLD E K GI + + G M GG
Sbjct: 1450 ILGQLAPSGTGEFDMLLDTEMLKSVAPTQRAMHSGIGVGAGSPEGAMTPYDIGSPLADGG 1509
Query: 1697 PAGMFFGSAATPSSMIHNPLQ 1717
AG +G++ +P I NP Q
Sbjct: 1510 YAGPDYGASFSP---IINPGQ 1527
>gi|330931381|ref|XP_003303389.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
gi|311320680|gb|EFQ88526.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
Length = 1738
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/195 (50%), Positives = 133/195 (68%), Gaps = 3/195 (1%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR--IIITESGEFKAIADWLLETDGT 1542
++R +E ++L D+TL+G+ + + ++ +KKR + S +W+L+T GT
Sbjct: 1273 WMRKLEHHLLDDVTLRGVPGVERAFIRE-HCVTKKRDDGSLLHSKSSPECKEWVLDTTGT 1331
Query: 1543 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1602
+L +VLS VD T+SN EI VLGIEA R + KE+ VL F G YVN+RH+ALL
Sbjct: 1332 ALAEVLSIPGVDASTTYSNSFIEILAVLGIEAARAGLLKELGMVLSFDGSYVNHRHMALL 1391
Query: 1603 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1662
D+M +G LMAITRHGINR DTGALMRCSFEETV++L++AA E D RGVSENI++G
Sbjct: 1392 VDIMCQRGVLMAITRHGINRNDTGALMRCSFEETVEILLEAAGFGELDDCRGVSENIMLG 1451
Query: 1663 QLPRMGTGCFDLLLD 1677
QL MGTG FD+++D
Sbjct: 1452 QLAPMGTGEFDVVMD 1466
>gi|18734|emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max]
Length = 494
Score = 192 bits (488), Expect = 2e-45, Method: Composition-based stats.
Identities = 93/175 (53%), Positives = 121/175 (69%)
Query: 1545 MKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
+ V+ DVD RT SN + E+ +VLGIEAVR+++ E+ V+ F G YVNYRHLA+LCD
Sbjct: 1 LAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCD 60
Query: 1605 VMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQL 1664
MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA +AE D +RGV+ENI++GQL
Sbjct: 61 TMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQL 120
Query: 1665 PRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAATPSSMIHNPLQTP 1719
+GTG L L+ E K+ IE+ L + M G GM + + H L +P
Sbjct: 121 APIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTPYHEGLMSP 175
>gi|451994492|gb|EMD86962.1| hypothetical protein COCHEDRAFT_1217961 [Cochliobolus heterostrophus
C5]
Length = 1737
Score = 192 bits (487), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/195 (49%), Positives = 135/195 (69%), Gaps = 3/195 (1%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSKKRIIITESGEFKAIADWLLETDGT 1542
++R +E ++L D+TL+G+ + + ++ H + + R ++ S +W+L+T GT
Sbjct: 1274 WMRKLEKHLLDDVTLRGVRGVERAFIREHTVTVEKEDRSLM-HSKNNDLCKEWVLDTTGT 1332
Query: 1543 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1602
SL +VL+ VD +T+SN EI VLGIEA R + KE+ VL F G YVN+RH+ALL
Sbjct: 1333 SLAEVLAIEGVDATKTYSNSFIEILGVLGIEAARAGLLKELGMVLSFDGSYVNHRHMALL 1392
Query: 1603 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1662
D+M +G LMAITRHGINR DTGALMRCSFEETV++L++AA E D RGVSENI++G
Sbjct: 1393 VDIMCQRGLLMAITRHGINRNDTGALMRCSFEETVEILLEAAGFGELDDCRGVSENIMLG 1452
Query: 1663 QLPRMGTGCFDLLLD 1677
QL MGTG FD+++D
Sbjct: 1453 QLAPMGTGEFDVVMD 1467
>gi|451846374|gb|EMD59684.1| hypothetical protein COCSADRAFT_164565 [Cochliobolus sativus ND90Pr]
Length = 1737
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/195 (49%), Positives = 135/195 (69%), Gaps = 3/195 (1%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSKKRIIITESGEFKAIADWLLETDGT 1542
++R +E ++L D+TL+G+ + + ++ H + + R ++ S +W+L+T GT
Sbjct: 1274 WMRKLEKHLLDDVTLRGVRGVERAFIREHTVTVEKEDRSLM-HSKNNDLCKEWVLDTTGT 1332
Query: 1543 SLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALL 1602
SL +VL+ VD +T+SN EI VLGIEA R + KE+ VL F G YVN+RH+ALL
Sbjct: 1333 SLAEVLAIEGVDATKTYSNSFIEILGVLGIEAARAGLLKELGMVLSFDGSYVNHRHMALL 1392
Query: 1603 CDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMG 1662
D+M +G LMAITRHGINR DTGALMRCSFEETV++L++AA E D RGVSENI++G
Sbjct: 1393 VDIMCQRGLLMAITRHGINRNDTGALMRCSFEETVEILLEAAGFGELDDCRGVSENIMLG 1452
Query: 1663 QLPRMGTGCFDLLLD 1677
QL MGTG FD+++D
Sbjct: 1453 QLAPMGTGEFDVVMD 1467
>gi|157841443|gb|ABV83184.1| RNA polymerase 2 [Pelodera punctata]
Length = 363
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 108/125 (86%), Gaps = 1/125 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKK 297
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L++VL+E+ VDPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 298 RMVITPEGGFKAIPEWLLETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKAI 357
Query: 1580 EKEMN 1584
E+EM+
Sbjct: 358 EREMH 362
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI+E+I+ GFGDDLN I+ DDNA+KLV R+RI N D K + EE +VDKMEDD+FLRC
Sbjct: 208 MEAIAERIHQGFGDDLNVIYTDDNADKLVFRLRITNQDADKGETEE-SVDKMEDDVFLRC 266
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 267 IESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
Score = 57.4 bits (137), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K + EE +VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 239 LRITNQDADKGETEE-SVDKMEDDVFLRCIESNMLSDLTLQGI 280
>gi|29243146|emb|CAD80260.1| RNA polymerase II large subunit [Brugia malayi]
Length = 282
Score = 191 bits (484), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 109/128 (85%), Gaps = 1/128 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKK 214
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L KVLSE++VDP+RT SNDICEIF+VLGIEAVRK++
Sbjct: 215 RVVITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPIRTTSNDICEIFEVLGIEAVRKAI 274
Query: 1580 EKEMNTVL 1587
E+EMN V+
Sbjct: 275 EREMNHVI 282
Score = 100 bits (249), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAI++KI+ GFGDDLN I+ DDNAEKLV R+RI N + K +E++ V++MEDD+FLRC
Sbjct: 125 MEAIADKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQEGDK-GNEDEQVERMEDDVFLRC 183
Query: 61 IEANMLSDMTLQFI 74
IE NMLSD+TLQ I
Sbjct: 184 IETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N + K +E++ V++MEDD+FLRCIE NMLSD+TLQ I
Sbjct: 156 LRITNQEGDK-GNEDEQVERMEDDVFLRCIETNMLSDLTLQGI 197
>gi|402086759|gb|EJT81657.1| hypothetical protein GGTG_01635 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1765
Score = 190 bits (483), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 137/200 (68%), Gaps = 11/200 (5%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD------WLLET 1539
L+ +E++ML +TL+G+ I + +++ D+K + + G D W L+T
Sbjct: 1281 LKRLESHMLDTLTLRGVPGIERAFLN---KDTK--LFVKPDGSLLNSKDAPECEEWYLDT 1335
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
GTSL VL+ VD VR+ +ND+ +I ++LGIEA R ++ E+ VL F G YVN+RHL
Sbjct: 1336 QGTSLRPVLAVDGVDRVRSGTNDLHQIVEMLGIEAARTALLGELTQVLAFDGSYVNHRHL 1395
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL DVMT +G + A+TRHGINR DTGALMRCSFEETV++L++AA+ E D RG+SEN+
Sbjct: 1396 ALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAASIGELDDCRGISENV 1455
Query: 1660 IMGQLPRMGTGCFDLLLDAE 1679
++GQL MGTG FD+LLD +
Sbjct: 1456 MLGQLAPMGTGAFDVLLDPK 1475
>gi|157841437|gb|ABV83180.1| RNA polymerase 2 [Pelodera teres]
Length = 131
Score = 190 bits (483), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/123 (73%), Positives = 105/123 (85%), Gaps = 1/123 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKK 68
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+IITE G FKAI +WLLETDGT+L++VLSE+ VDP+RT SNDICEIF+VLGIEAVRK +
Sbjct: 69 RMIITEEGGFKAIPEWLLETDGTALLRVLSEQSVDPIRTSSNDICEIFEVLGIEAVRKGI 128
Query: 1580 EKE 1582
E+E
Sbjct: 129 ERE 131
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 23 DNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 74
DNA+KLV R+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 1 DNADKLVFRLRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 74 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 116
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D K + EE VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 10 LRITNQDADKGESEEQ-VDKMEDDVFLRCIESNMLSDLTLQGI 51
>gi|157841382|gb|ABV83145.1| RNA polymerase 2 [Distolabrellus veechi]
Length = 583
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/134 (68%), Positives = 109/134 (81%), Gaps = 1/134 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQGIE I KVYM P TD+KK
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGIEQIAKVYMDKPTTDNKK 509
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R++IT G FKAI +WLLETDGT+L+ VL+E +VDPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 510 RMVITPEGGFKAIPEWLLETDGTALLTVLAEPNVDPVRTSSNDICEIFEVLGIEAVRKAI 569
Query: 1580 EKEMNTVLQFYGLY 1593
E+EM+ V+ F G Y
Sbjct: 570 EREMDQVISFDGSY 583
Score = 100 bits (250), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+E+I+AGFG+ LN I+ DDNA KLV RIRI + D K D E+ VDKMEDDMFLRC
Sbjct: 420 MEQIAERIHAGFGEXLNVIYTDDNAXKLVFRIRITSQDTDK-GDSEEQVDKMEDDMFLRC 478
Query: 61 IEANMLSDMTLQFI 74
IE NMLSD+TLQ I
Sbjct: 479 IEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRI + D K D E+ VDKMEDDMFLRCIE NMLSD+TLQ I
Sbjct: 451 IRITSQDTDK-GDSEEQVDKMEDDMFLRCIEQNMLSDLTLQGI 492
>gi|169616762|ref|XP_001801796.1| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
gi|160703256|gb|EAT81264.2| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
Length = 1720
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 138/197 (70%), Gaps = 5/197 (2%)
Query: 1485 FLRCIEANMLSDMTLQGIEAIGKVYM---HLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
++R +E ++L + L+G++ + + ++ ++ + + +++++S +W+L+T G
Sbjct: 1280 WMRKLETHLLDGVVLRGLKGVERAFIREDNVVVMNEDRSLVLSKSDP--RCKEWVLDTTG 1337
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
TSL +VL+ VD +T+SN EI VLGIEA R + E+ VL F G YVN+RH+AL
Sbjct: 1338 TSLAEVLAVEGVDGTKTYSNSFIEILGVLGIEAARAGLLHELGMVLSFDGSYVNHRHMAL 1397
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
L D+MT +G LMAITRHGINR DTGALMRCSFEETV++L++AA E D RGVSENI++
Sbjct: 1398 LVDIMTQRGMLMAITRHGINRNDTGALMRCSFEETVEILLEAAGFGELDDCRGVSENIML 1457
Query: 1662 GQLPRMGTGCFDLLLDA 1678
GQL MGTG FD+++D+
Sbjct: 1458 GQLAPMGTGEFDVVMDS 1474
>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
Length = 1879
Score = 189 bits (479), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 175/336 (52%), Gaps = 60/336 (17%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR+M ++++ ++++ D ED M L+ A M D+ L G+ I KV++ +
Sbjct: 1269 IRVMKTEEA---SKDESADPTEDTM-LKLSAAIM--DVRLHGVPNIRKVFIRA----ENQ 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
I E G F+ +W+L+T+G +L +VL+ VDP RT SN I E+ +VLGIEA R ++
Sbjct: 1319 HIYDRERGSFRKYEEWILDTEGINLEQVLAFEGVDPRRTMSNSIIEVLEVLGIEAARAAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+ F G YVNYRHLA L D+MT KG LMAITRHGINR G + +CSFEETVD+
Sbjct: 1379 LKEVRNVISFDGSYVNYRHLACLVDIMTCKGCLMAITRHGINRNGNGPMTQCSFEETVDI 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD-----------AEKCKDGIEI- 1687
L AA E D + GVS+NI+MG + +GTG FDLLLD A C
Sbjct: 1439 LYRAAMFGERDRLTGVSDNIMMGNMCPLGTGAFDLLLDESALESAFDVQASVCASATPGR 1498
Query: 1688 ---------------------PLATGMMGGPA------GMF---FGSAA------TPSSM 1711
P+ + +GG A G F GS A +P+S
Sbjct: 1499 YTPGRSPHRTPGPMSPSHMLSPMHSPFIGGGAFSPIVGGAFSPVHGSGAPMSPGYSPTSP 1558
Query: 1712 IHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDS 1747
++P + S T+ + A++P+ SP S
Sbjct: 1559 GYSPTSPAY--SPTSPAYSPTSPAYSPTSPAYSPTS 1592
Score = 40.8 bits (94), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Query: 14 DDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMF 57
D +N + NDDNAEKL++RIR+M ++++ ++++ D ED M
Sbjct: 1251 DFINVLVNDDNAEKLIMRIRVMKTEEA---SKDESADPTEDTML 1291
>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
populorum SO2202]
Length = 1780
Score = 187 bits (474), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/228 (46%), Positives = 146/228 (64%), Gaps = 14/228 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH-----LPQ 1514
+R+ N D EE+ + EDD L+ + +ML ++ L+G++ + +V++ + +
Sbjct: 1256 VRMTNQAD----KEEELGESSEDDT-LKQLSEHMLDNVVLRGVQGVRRVFVSKDLSMIEE 1310
Query: 1515 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1574
D K + +S KA +W L+TDG +L VL+ VD RT N +V GIEA
Sbjct: 1311 ADGK----LVKSKNDKACEEWYLDTDGINLKDVLAVEGVDSTRTTCNHFQSTMRVFGIEA 1366
Query: 1575 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1634
VR S+ +E+ VL G YVN+RH+A+LCDVM A+G LMA+TRHGINR DTGALMRCSFE
Sbjct: 1367 VRASLMRELKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRADTGALMRCSFE 1426
Query: 1635 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1682
ETV++L +AA+ E D RGVSENII+GQL GTG FD+LLD E K
Sbjct: 1427 ETVEILFEAASSGELDDCRGVSENIILGQLAPSGTGEFDVLLDNEMLK 1474
Score = 42.4 bits (98), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++EKI + D+ IF+DDN++++V+R+R+ N D EE+ + EDD L+ +
Sbjct: 1228 VAEKIRETYPKDVAVIFSDDNSDEMVVRVRMTNQAD----KEEELGESSEDDT-LKQLSE 1282
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDA 90
+ML ++ L+ + R+ S D M +E D
Sbjct: 1283 HMLDNVVLRGVQGVRRVFVSKDLSMIEEADG 1313
>gi|296422783|ref|XP_002840938.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637165|emb|CAZ85129.1| unnamed protein product [Tuber melanosporum]
Length = 1025
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 145/257 (56%), Gaps = 63/257 (24%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
R+ N+D +K DEE +E+D L+ +E ++L ++TL G+
Sbjct: 571 RMKNADQAKSLDEES---DLEEDTMLKRLENHILDELTLNGV------------------ 609
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
LE +G VD RT+SN EI QV GIEA R ++
Sbjct: 610 ----------------LEVEG-----------VDTTRTYSNTFEEILQVFGIEATRGALL 642
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1640
+E+ VL F G YVN RHLALLCDVMT++GHLMAITRHGINR DTGALMRCSFEETV++L
Sbjct: 643 RELRQVLAFDGSYVNERHLALLCDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEIL 702
Query: 1641 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD----AEKCKD-----GIEIPLAT 1691
++AAA E D RG+SEN+++GQL +GTG FD+ LD AE D G EIP
Sbjct: 703 LEAAASGELDDCRGISENVMLGQLAPLGTGEFDVFLDEKMLAEVIVDNSRVTGGEIP--- 759
Query: 1692 GMMGGPAGMFFGSAATP 1708
GM G+ AATP
Sbjct: 760 GMG---KGVLADGAATP 773
>gi|426270567|gb|AFY22635.1| ama-1, partial [Oscheius sp. DW-2012]
Length = 150
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/124 (69%), Positives = 104/124 (83%), Gaps = 1/124 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQGI +I KVYM+ P TD KK
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMYKPNTDDKK 86
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
++IIT G+FK I+DW+LETDGT+L++VL E +DP +T SNDICEIF+VLGIEAVRKS+
Sbjct: 87 KVIITPEGDFKHISDWILETDGTALLRVLFEPSIDPAKTTSNDICEIFEVLGIEAVRKSI 146
Query: 1580 EKEM 1583
EKEM
Sbjct: 147 EKEM 150
Score = 104 bits (259), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 5 SEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEAN 64
++KI+AGFGDDLN I+ DDNAEKLV RIRI N D KM +EE +DKMEDDMFLRCIE+N
Sbjct: 1 ADKIHAGFGDDLNVIYTDDNAEKLVFRIRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESN 59
Query: 65 MLSDMTLQFI 74
MLSD+TLQ I
Sbjct: 60 MLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
Score = 60.5 bits (145), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRI N D KM +EE +DKMEDDMFLRCIE+NMLSD+TLQ I
Sbjct: 28 IRITNQGDDKMAEEEQ-IDKMEDDMFLRCIESNMLSDLTLQGI 69
>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
Length = 1789
Score = 183 bits (464), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 165/289 (57%), Gaps = 18/289 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ ++++ ++++ D ED M L+ A M D+ L G+ I KV++ +
Sbjct: 1260 IRVVKTEEA---SKDESADPTEDTM-LKLSGAIM--DVRLHGVPNIRKVFIRA----ENQ 1309
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ E G F+ +W+L+T+G +L +VL+ VD RT SN I E+ +VLGIEA R ++
Sbjct: 1310 HVYDKEKGAFRKYEEWILDTEGINLEQVLAFEGVDSRRTMSNSIIEVLEVLGIEAARAAL 1369
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+QF G YVNYRHLA L D+MT KG LMAITRHGINR G + +CSFEETVD+
Sbjct: 1370 FKEVRNVIQFDGSYVNYRHLACLVDIMTCKGCLMAITRHGINRNGNGPMTQCSFEETVDI 1429
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
L AA E D + GVS+NI+MG + +GTG FDLLLD + ++ + G
Sbjct: 1430 LYRAAMFGERDKLMGVSDNIMMGNMCPLGTGSFDLLLDESALESAFDVQIGNLAFGEDYT 1489
Query: 1700 MFFG-------SAATPSSMIHNPLQTP-HNTSLTNATHQSRDKAFAPSE 1740
M G A TP M + L +P H+ + + AF+P+
Sbjct: 1490 MTPGRMTPSRSPARTPGPMSPSHLLSPMHSPFVGSGFSPMHPGAFSPAH 1538
>gi|295873184|gb|ADG48674.1| CG1554 [Drosophila yakuba]
gi|295873186|gb|ADG48675.1| CG1554 [Drosophila yakuba]
gi|295873188|gb|ADG48676.1| CG1554 [Drosophila yakuba]
gi|295873190|gb|ADG48677.1| CG1554 [Drosophila yakuba]
gi|295873192|gb|ADG48678.1| CG1554 [Drosophila yakuba]
gi|295873194|gb|ADG48679.1| CG1554 [Drosophila yakuba]
gi|295873196|gb|ADG48680.1| CG1554 [Drosophila yakuba]
gi|295873198|gb|ADG48681.1| CG1554 [Drosophila yakuba]
gi|295873200|gb|ADG48682.1| CG1554 [Drosophila yakuba]
gi|295873202|gb|ADG48683.1| CG1554 [Drosophila yakuba]
gi|295873204|gb|ADG48684.1| CG1554 [Drosophila yakuba]
gi|295873206|gb|ADG48685.1| CG1554 [Drosophila yakuba]
gi|295873208|gb|ADG48686.1| CG1554 [Drosophila yakuba]
gi|295873210|gb|ADG48687.1| CG1554 [Drosophila yakuba]
gi|295873212|gb|ADG48688.1| CG1554 [Drosophila yakuba]
gi|295873214|gb|ADG48689.1| CG1554 [Drosophila santomea]
gi|295873216|gb|ADG48690.1| CG1554 [Drosophila santomea]
gi|295873218|gb|ADG48691.1| CG1554 [Drosophila santomea]
gi|295873220|gb|ADG48692.1| CG1554 [Drosophila santomea]
gi|295873222|gb|ADG48693.1| CG1554 [Drosophila santomea]
gi|295873224|gb|ADG48694.1| CG1554 [Drosophila santomea]
gi|295873226|gb|ADG48695.1| CG1554 [Drosophila santomea]
gi|295873228|gb|ADG48696.1| CG1554 [Drosophila santomea]
gi|295873230|gb|ADG48697.1| CG1554 [Drosophila santomea]
gi|295873232|gb|ADG48698.1| CG1554 [Drosophila santomea]
gi|295873234|gb|ADG48699.1| CG1554 [Drosophila santomea]
gi|295873236|gb|ADG48700.1| CG1554 [Drosophila santomea]
gi|295873238|gb|ADG48701.1| CG1554 [Drosophila santomea]
gi|295873240|gb|ADG48702.1| CG1554 [Drosophila santomea]
gi|295873242|gb|ADG48703.1| CG1554 [Drosophila santomea]
Length = 348
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/95 (87%), Positives = 93/95 (97%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 313
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVD 1554
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVD
Sbjct: 314 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVD 348
Score = 129 bits (325), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 223 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 282
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 283 IEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 254 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 296
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 177 bits (450), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 149/251 (59%), Gaps = 19/251 (7%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + +RI + E +W+L+TDG +L ++L D+ + + ND+ E+++V
Sbjct: 1220 IHLKGITNIRRIYLLRERE-----EWILQTDGKNLKQLLLVEDILANKVYCNDLLEVYEV 1274
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEAVR+ + +E+ V++ G YVN+RHL LLCDVMT KG L ITRHG NR TGAL
Sbjct: 1275 LGIEAVRECILRELRNVIEAEGSYVNFRHLYLLCDVMTLKG-LRGITRHGANRAATGALK 1333
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP- 1688
RCSFEETV++L++A+ AE + RGV+ENI++GQL +GTG +LD + + I +
Sbjct: 1334 RCSFEETVEILLEASCFAERNYCRGVTENIMLGQLAPIGTGNTICILDKKALRSVIPVAK 1393
Query: 1689 -------LATGMMGGPAG-MFFGSAATPSSMI----HNPLQTPHNTSLTNATHQSRDKAF 1736
+AT ++ P + +GS++ P S I + TP S T+ + A+
Sbjct: 1394 SFDFLGEVATPVIRSPVSDVRYGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAY 1453
Query: 1737 APSELFLSPDS 1747
+P+ SP S
Sbjct: 1454 SPTSPAYSPTS 1464
>gi|294887791|ref|XP_002772233.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239876277|gb|EER04049.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 280
Score = 177 bits (450), Expect = 4e-41, Method: Composition-based stats.
Identities = 91/161 (56%), Positives = 117/161 (72%)
Query: 1524 TESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEM 1583
++ G F +W+L+TDG +L +VL+ VD RTFSNDI EI VLGIEA RK++ E+
Sbjct: 11 SDVGTFARSREWVLDTDGCNLEQVLTMEAVDSTRTFSNDIVEILNVLGIEACRKALLNEL 70
Query: 1584 NTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDA 1643
V+ F G YVNYRH+++LCD M KGHLM+ITRHGINR + G LMR SFEE V++LMDA
Sbjct: 71 RQVISFDGSYVNYRHMSVLCDTMCQKGHLMSITRHGINRVERGPLMRSSFEEMVEMLMDA 130
Query: 1644 AAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 1684
A +AE D MRGVSENI++GQL +GT +LL+D +K D
Sbjct: 131 ACYAETDHMRGVSENIMLGQLAPIGTAECELLIDTDKLVDA 171
>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
Length = 1402
Score = 176 bits (447), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 126/199 (63%), Gaps = 14/199 (7%)
Query: 1467 DSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSKKRIIIT 1524
D K+++E D E+D L+ +EA+ML ++L+GI I +V+M H T
Sbjct: 1205 DPKLEEEGD----HEEDQILKRVEAHMLESISLRGIPGITRVFMMQHKMSTPD------- 1253
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
ESGEF +W+LETDG +L +V++ VD RT+SN+ EI VLGIEA R ++ KE+
Sbjct: 1254 ESGEFSQKQEWVLETDGVNLAEVIAVPGVDSSRTYSNNFIEILSVLGIEATRSALYKEIL 1313
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV-DVLMDA 1643
V+ F G YVNYRH+ALL DVMT++GHLMA TRHGINR +TGALMRCSF D
Sbjct: 1314 NVIAFDGSYVNYRHMALLVDVMTSRGHLMARTRHGINRAETGALMRCSFRRNGRDSFGCW 1373
Query: 1644 AAHAEADPMRGVSENIIMG 1662
+ D RG+SEN+I G
Sbjct: 1374 CSCPSWDDCRGISENVIFG 1392
Score = 54.7 bits (130), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D K+++E D E+D L+
Sbjct: 1169 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVIR--DPKLEEEGD----HEEDQILKR 1222
Query: 61 IEANMLSDMTLQFI 74
+EA+ML ++L+ I
Sbjct: 1223 VEAHMLESISLRGI 1236
>gi|378756428|gb|EHY66452.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida sp. 1 ERTm2]
Length = 1609
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 120/167 (71%), Gaps = 1/167 (0%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR+ I+E G + +++L+T+GT LM VL +DP RT SND E+ QV GIEA R S
Sbjct: 1282 KRVFISEIGA-EDKKEYVLQTEGTGLMDVLGHPLIDPTRTVSNDPLEMSQVFGIEAARTS 1340
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ E+ V++ G YVN+RHLA+L D+MT +GH+ ITRHG NR ++GALMRCSFEETV+
Sbjct: 1341 ILNEIRMVIESDGSYVNFRHLAILADIMTQRGHICGITRHGTNRGESGALMRCSFEETVE 1400
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI 1685
+L++AAA+AE D +GV E++++G + +GTG DLL+D + + G+
Sbjct: 1401 ILLEAAANAEIDRCKGVVESVMLGNVAAIGTGITDLLIDKKSIEMGV 1447
>gi|428180807|gb|EKX49673.1| Rpb1, RNA polymerase II largest subunit [Guillardia theta CCMP2712]
Length = 1473
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 134/199 (67%), Gaps = 8/199 (4%)
Query: 1493 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF----KAIADWLLETDGTSLMKVL 1548
ML +TL+GI I +V + Q ++ + ++ KA+ +L +G +L++VL
Sbjct: 1247 MLDTITLRGIPDIPRVLIE--QDKLYHKLFSPDDPKYEKYNKAVPSYLY-AEGNNLLRVL 1303
Query: 1549 SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTA 1608
S +VD VRT SNDI EI QVLGIEAVR ++ KE+ V++ YVNYRH+A L DVMT
Sbjct: 1304 SFAEVDQVRTVSNDITEILQVLGIEAVRCALLKEIREVMRASS-YVNYRHIACLVDVMTH 1362
Query: 1609 KGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMG 1668
+G LM+ITRHGINR +TG LMRC+FEETV++L++AAA + D GV+EN+I+G L +G
Sbjct: 1363 RGILMSITRHGINRLETGPLMRCTFEETVEILLEAAAFSMPDRCLGVAENVILGNLCPLG 1422
Query: 1669 TGCFDLLLDAEKCKDGIEI 1687
TG F+L L+ E C + + +
Sbjct: 1423 TGSFELFLNTESCLEAVPV 1441
>gi|429962270|gb|ELA41814.1| hypothetical protein VICG_01166 [Vittaforma corneae ATCC 50505]
Length = 1569
Score = 173 bits (438), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 117/169 (69%), Gaps = 12/169 (7%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
++W L+TDG + VLS ++D R +NDI I+ VLG+EA R+S+ E++ V++ G
Sbjct: 1231 SEWCLQTDGIDFLSVLSAPNIDGTRVMANDIYVIYSVLGVEAARQSILNELSLVIEDNGS 1290
Query: 1593 -YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 1651
YVN+RH++LL DVMT KG+L ITRHG++RQ L R SFEETVDVL+DAAA++E D
Sbjct: 1291 SYVNHRHMSLLADVMTVKGYLTGITRHGVSRQSASVLKRASFEETVDVLLDAAANSELDA 1350
Query: 1652 MRGVSENIIMGQLPRMGTGCFDLLLDAEK-----------CKDGIEIPL 1689
++GVSENI++GQLP +GTG D++LD +K K+G+ PL
Sbjct: 1351 VKGVSENIMLGQLPPVGTGNVDIVLDIKKIEHIIPRYVSPSKEGMSAPL 1399
>gi|4096110|gb|AAC99803.1| RNA polymerase II largest subunit [Kluyveromyces lactis]
Length = 414
Score = 171 bits (433), Expect = 4e-39, Method: Composition-based stats.
Identities = 80/143 (55%), Positives = 107/143 (74%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
LETDG +L +V++ VD R ++N +I VLGIEA R ++ +E+ V+ G YVNY
Sbjct: 1 LETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNY 60
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ALL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L +A A AE D RGVS
Sbjct: 61 RHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCRGVS 120
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAE 1679
EN+I+GQ+ +GTG FD+++D E
Sbjct: 121 ENVILGQIAPIGTGAFDVMIDDE 143
>gi|300706227|ref|XP_002995402.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
gi|239604482|gb|EEQ81731.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
Length = 1612
Score = 170 bits (430), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 118/172 (68%), Gaps = 5/172 (2%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
K++ ITE E K +W L+TDG L +++S D+ SNDI EI +VLGIEA R++
Sbjct: 1231 KKVYITEDKEQK---NWFLQTDGVCLREIMSHPDICGHLVTSNDINEIVEVLGIEAARET 1287
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E+ V+ G YVN+RH++LL DVMT KG+L ITRHG+N+ GAL R SFEETVD
Sbjct: 1288 ILQELTLVIDGNGSYVNHRHISLLADVMTMKGYLTGITRHGVNKVGFGALKRASFEETVD 1347
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA 1690
+L+DAA AE + +G++ENI+MGQL +GTG D+LLD K + IPL+
Sbjct: 1348 ILLDAAYAAENNVTKGITENIMMGQLAPLGTGIGDILLDVSKLE--FAIPLS 1397
>gi|13183799|gb|AAK15346.1|AF338253_1 RNA polymerase II largest subunit [Leptomonas seymouri]
Length = 1657
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 182/341 (53%), Gaps = 38/341 (11%)
Query: 1363 IEANMLSDMTLQFIRIMNS---DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1419
IE L+++T R +N+ +D + + E AV M +D L + + +
Sbjct: 1133 IEYCTLANITTTVPRPLNTVVVEDVNILEWEQAV--MNEDEGLDAAQPSPFIARLILNTE 1190
Query: 1420 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDK 1479
+ N+ M+D + A+ +M DD +L ++AN+ +++ + +R+ + D+V +
Sbjct: 1191 LFNNKQLNMKDVKSAIQQM-DDSYL--MQANLKNNIRHRVVRL----RPRKCAGADSVPE 1243
Query: 1480 MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT---DSKKRIIITESGEFKAIADWL 1536
+ + A +L + L GI I K + T D I ES W+
Sbjct: 1244 LTKAV------AQLLQSVHLLGIPGIKKTLLKEGTTFNVDPATGGITKES-------SWM 1290
Query: 1537 LETDGTSLMK----VLSERDVDPV---RTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQF 1589
++T+GT+L + V+++ V+ V +T SN I EI VLGIEA R + E+
Sbjct: 1291 VDTEGTALQRIFVGVVNQHGVNIVDFAKTSSNKIPEIVTVLGIEAARPKLLFELCQAYLA 1350
Query: 1590 YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAE 1648
YGL +NYRH +L D M +G+LMA++R GINR +T G LMRCSFEETV VLM AAA E
Sbjct: 1351 YGLNINYRHYTILVDTMCQRGYLMAVSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGE 1410
Query: 1649 ADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL 1689
DP+RGVS N++MG R+GTG FDL+LD C + +PL
Sbjct: 1411 KDPVRGVSANLVMGNQARIGTGLFDLMLDMGNCSN--VVPL 1449
>gi|85682951|gb|ABC73451.1| CG1554 [Drosophila miranda]
Length = 335
Score = 168 bits (425), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/88 (86%), Positives = 86/88 (97%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 307
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKV 1547
RI+ITE+GEFKAI +WLLETDGTS+MKV
Sbjct: 308 RIVITETGEFKAIGEWLLETDGTSMMKV 335
Score = 129 bits (325), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 217 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 276
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 277 IEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
Score = 73.9 bits (180), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 248 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 290
>gi|154342676|ref|XP_001567286.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064615|emb|CAM42715.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1662
Score = 167 bits (422), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 172/330 (52%), Gaps = 34/330 (10%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ +++D ++ANM +D RI+ K D+V + +
Sbjct: 1207 MKDVKSAIRQVDDTY---TVQANMENDGQ----RIVRLRPRKCTGA-DSVPALTKAV--- 1255
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
A +L + L+GI I K + + + E+G K + W+++T+GT+L ++
Sbjct: 1256 ---AQLLQSVHLRGIPGIKKTLL----KEGNTFRVDPETGGMKNESSWMVDTEGTALQRI 1308
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ +D V+T SN I E+ VLGIEA R+ + E+ YGL +NYRH
Sbjct: 1309 FVGVVNNEGKNIIDFVKTSSNKIPEVVSVLGIEAARRKLLFELREAYLAYGLNINYRHYT 1368
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D M +G+LMA++R GINR +T G LMRCSFEETV VLM AAA E DP+RGVS N+
Sbjct: 1369 ILVDTMCQRGYLMAVSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSANL 1428
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMFFG-SAATPSSMIHNPLQT 1718
++G R+GTG FDL+LD K + +PL + ++ ++ P S LQ
Sbjct: 1429 VLGNQARIGTGLFDLMLDMSKLQH--VVPLDKATEARTSNVYHTDTSVAPGSST---LQG 1483
Query: 1719 PHNTSLTNATHQSRDKAFAPSELFLSPDSR 1748
P+ + H++ A S ++ P R
Sbjct: 1484 PYGELPPSTVHENSSLAAGTSSVY--PPHR 1511
>gi|401426590|ref|XP_003877779.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494025|emb|CBZ29319.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1662
Score = 167 bits (422), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 153/272 (56%), Gaps = 26/272 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + AV ++ DD ++ ++ANM +D RI+ K D+V + +
Sbjct: 1207 MKDVKSAVRQV-DDTYM--VQANMENDGQ----RIVRLRPRKCTGA-DSVPALTKAV--- 1255
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
A +L + L+GI I K + + + E+G K + W+++T+GT+L ++
Sbjct: 1256 ---AQLLQSVHLRGIPGIKKTLL----KEGNTFRVDPETGGIKNESSWMVDTEGTALQRI 1308
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ +D +T SN I E+ VLGIEA R+ + E+ YGL +NYRH
Sbjct: 1309 FVGVVNSEGKNIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYT 1368
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D M +G+LMA++R GINR +T G LMRCSFEETV VLM AAA E DP+RGVS N+
Sbjct: 1369 ILVDTMCQRGYLMAVSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSANL 1428
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
++G R+GTG FDL+LD K + + + AT
Sbjct: 1429 VLGNQARIGTGLFDLMLDMSKLQHVVPLDKAT 1460
>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae]
gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae SJ-2008]
Length = 1515
Score = 166 bits (421), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 124/196 (63%), Gaps = 16/196 (8%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N L + L+G +++ KVY+ D K+ +W L+TDGT L +VL
Sbjct: 1240 NSLLKLQLRGYKSVKKVYI---SEDKDKK-------------EWYLQTDGTCLPQVLGNP 1283
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
V+ T SND+ EI + LGIEA R+S+ +E+ V+ G YVNYRH++LL DVMT +G+
Sbjct: 1284 AVNSRLTISNDLIEIAETLGIEAARESILRELAMVIDGNGSYVNYRHMSLLADVMTMRGY 1343
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
L ITRHG+N+ GAL R SFEETV++L+DAA +E + RG++ENI+MGQL MGTG
Sbjct: 1344 LCGITRHGVNKAGAGALKRSSFEETVEILLDAALVSEKNLCRGITENIMMGQLAPMGTGN 1403
Query: 1672 FDLLLDAEKCKDGIEI 1687
+++LD +K I +
Sbjct: 1404 VEIMLDVKKLDKAIPL 1419
>gi|387594692|gb|EIJ89716.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm3]
Length = 1612
Score = 165 bits (418), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 149/257 (57%), Gaps = 47/257 (18%)
Query: 1519 KRIIITESG-----EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
KR+ I+E G EF +L+T+GT L+ VLS +DP RT SND E+ +V G+E
Sbjct: 1282 KRVFISEIGTEDKKEF------VLQTEGTGLLDVLSHPLIDPTRTVSNDPLEMCRVFGVE 1335
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R S+ E+ V++ G YVN+RHLA+L D+MT +G + ITRHG NR ++GALMRCSF
Sbjct: 1336 AARTSILNEIRLVIESDGSYVNFRHLAILADIMTQRGIICGITRHGTNRGESGALMRCSF 1395
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1693
EETV++L++AAA AE D +GV E++++G++ +GTG D+L+D K IE+ G+
Sbjct: 1396 EETVEILLEAAATAEIDRCKGVVESVMLGKIASIGTGITDVLID----KKSIEL----GV 1447
Query: 1694 M----------------GGPAGMFFGSAATPSSMIHN---PLQTPHNTSLTNATHQSRDK 1734
M G P + +PSS IH+ + +P + S+ + Q+ +
Sbjct: 1448 MAMEKYSFEDEEDISDEGTPVDLL-----SPSSTIHSDHTVMSSPSDRSIHGWSPQNTEI 1502
Query: 1735 AFAPSELFLSPDSRYPY 1751
+ S SP+ Y Y
Sbjct: 1503 GYTAS----SPNISYGY 1515
>gi|387596460|gb|EIJ94081.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm1]
Length = 1612
Score = 165 bits (418), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 149/257 (57%), Gaps = 47/257 (18%)
Query: 1519 KRIIITESG-----EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
KR+ I+E G EF +L+T+GT L+ VLS +DP RT SND E+ +V G+E
Sbjct: 1282 KRVFISEIGTEDKKEF------VLQTEGTGLLDVLSHPLIDPTRTVSNDPLEMCRVFGVE 1335
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R S+ E+ V++ G YVN+RHLA+L D+MT +G + ITRHG NR ++GALMRCSF
Sbjct: 1336 AARTSILNEIRLVIESDGSYVNFRHLAILADIMTQRGIICGITRHGTNRGESGALMRCSF 1395
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1693
EETV++L++AAA AE D +GV E++++G++ +GTG D+L+D K IE+ G+
Sbjct: 1396 EETVEILLEAAATAEIDRCKGVVESVMLGKIASIGTGITDVLID----KKSIEL----GV 1447
Query: 1694 M----------------GGPAGMFFGSAATPSSMIHN---PLQTPHNTSLTNATHQSRDK 1734
M G P + +PSS IH+ + +P + S+ + Q+ +
Sbjct: 1448 MAMEKYSFEDEEDISDEGTPVDLL-----SPSSTIHSDHTVMSSPSDRSIHGWSPQNTEI 1502
Query: 1735 AFAPSELFLSPDSRYPY 1751
+ S SP+ Y Y
Sbjct: 1503 GYTAS----SPNISYGY 1515
>gi|157873478|ref|XP_001685248.1| RNA polymerase ii largest subunit [Leishmania major strain Friedlin]
gi|68128319|emb|CAJ08467.1| RNA polymerase ii largest subunit [Leishmania major strain Friedlin]
Length = 1662
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 153/272 (56%), Gaps = 26/272 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++ DD ++ ++ANM +D RI+ K D+V + +
Sbjct: 1207 MKDVKSAIRQV-DDTYM--VQANMENDGQ----RIVRLRPRKCTGA-DSVPALTKAV--- 1255
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
A +L + L+GI I K + + + E+G K + W+++T+GT+L ++
Sbjct: 1256 ---AQLLQSVHLRGIPGIKKTLL----KEGNTFRVDPEAGGIKNESSWMVDTEGTALQRI 1308
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ +D +T SN I E+ VLGIEA R+ + E+ YGL +NYRH
Sbjct: 1309 FVGVVNSEGKNIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYT 1368
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D M +G+LMA++R GINR +T G LMRCSFEETV VLM AAA E DP+RGVS ++
Sbjct: 1369 ILVDTMCQRGYLMAVSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASL 1428
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
++G R+GTG FDLLLD K + + + AT
Sbjct: 1429 VLGNQARIGTGLFDLLLDMSKLQHVVPLDKAT 1460
>gi|146095454|ref|XP_001467585.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
gi|134071950|emb|CAM70645.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
Length = 1662
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 153/272 (56%), Gaps = 26/272 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++ DD ++ ++ANM +D RI+ K D+V + +
Sbjct: 1207 MKDVKSAIRQV-DDTYM--VQANMENDGQ----RIVRLRPRKCTGA-DSVPALTKAV--- 1255
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
A +L + L+GI I K + + + E+G K + W+++T+GT+L ++
Sbjct: 1256 ---AQLLQSVHLRGIPGIKKTLL----KEGNTFRVDPETGGIKNESSWMVDTEGTALQRI 1308
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ +D +T SN I E+ VLGIEA R+ + E+ YGL +NYRH
Sbjct: 1309 FVGVVNNEGKNIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYT 1368
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D M +G+LMA++R GINR +T G LMRCSFEETV VLM AAA E DP+RGVS ++
Sbjct: 1369 ILVDTMCQRGYLMAVSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASL 1428
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
++G R+GTG FDLLLD K + + + AT
Sbjct: 1429 VLGNQARIGTGLFDLLLDMSKLQHVVPLDKAT 1460
>gi|398020383|ref|XP_003863355.1| RNA polymerase ii largest subunit [Leishmania donovani]
gi|322501587|emb|CBZ36666.1| RNA polymerase ii largest subunit [Leishmania donovani]
Length = 1662
Score = 165 bits (417), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 153/272 (56%), Gaps = 26/272 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++ DD ++ ++ANM +D RI+ K D+V + +
Sbjct: 1207 MKDVKSAIRQV-DDTYM--VQANMENDGQ----RIVRLRPRKCTGA-DSVPALTKAV--- 1255
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
A +L + L+GI I K + + + E+G K + W+++T+GT+L ++
Sbjct: 1256 ---AQLLQSVHLRGIPGIKKTLL----KEGNTFRVDPETGGIKNESSWMVDTEGTALQRI 1308
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ +D +T SN I E+ VLGIEA R+ + E+ YGL +NYRH
Sbjct: 1309 FVGVVNNEGKNIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYT 1368
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D M +G+LMA++R GINR +T G LMRCSFEETV VLM AAA E DP+RGVS ++
Sbjct: 1369 ILVDTMCQRGYLMAVSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASL 1428
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
++G R+GTG FDLLLD K + + + AT
Sbjct: 1429 VLGNQARIGTGLFDLLLDMSKLQHVVPLDKAT 1460
>gi|5263288|gb|AAC47792.2| RNA polymerase II large subunit [Leishmania major]
Length = 1663
Score = 164 bits (415), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 151/272 (55%), Gaps = 26/272 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++ DD ++ ++ANM +D Q I + D A+ K
Sbjct: 1208 MKDVKSAIRQV-DDTYM--VQANMENDG--QRIVRLRPRKCTGADSXPALTKAV------ 1256
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
A +L + L+GI I K + + + E+G K + W+++T+GT+L ++
Sbjct: 1257 ---AQLLQSVHLRGIPGIKKTLL----KEGNTFRVDPEAGGIKNESSWMVDTEGTALQRI 1309
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ +D +T SN I E+ VLGIEA R+ + E+ YGL +NYRH
Sbjct: 1310 FVGVVNSEGKNIIDFSKTSSNKIPEVVTVLGIEAARRKMLSELREAYLAYGLNINYRHYT 1369
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D M +G+LMA++R GINR +T G LMRCSFEETV VLM AAA E DP+RGVS ++
Sbjct: 1370 ILVDTMCQRGYLMAVSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASL 1429
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
++G R+GTG FDLLLD K + + + AT
Sbjct: 1430 VLGNQARIGTGLFDLLLDMSKLQHVVPLDKAT 1461
>gi|160331837|ref|XP_001712625.1| rpb1 [Hemiselmis andersenii]
gi|159766074|gb|ABW98300.1| rpb1 [Hemiselmis andersenii]
Length = 1464
Score = 164 bits (414), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 123/190 (64%), Gaps = 6/190 (3%)
Query: 1493 MLSDMTLQ--GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
LS++ L+ G I K ++ S + I + SG K +++L+T+G L +L+
Sbjct: 1278 FLSNINLKSYGTSKIKKAFIR----KSSQIIFESISGSIKNNEEYVLDTEGVDLRYILNY 1333
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
+D R SNDI EI+++LGIEAVRK + +E+ ++ F G YVN RHL+LL DVMT KG
Sbjct: 1334 SGIDYTRCSSNDILEIYKILGIEAVRKILIQELRNLISFDGSYVNSRHLSLLVDVMTHKG 1393
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
LM+ITRHGINR D G + +CSFEET++VL AAA D ++GVS +I++GQ+ +GTG
Sbjct: 1394 KLMSITRHGINRTDIGPIAKCSFEETIEVLYQAAAFGVCDNLKGVSGSILVGQVSSLGTG 1453
Query: 1671 CFDLLLDAEK 1680
DL L +K
Sbjct: 1454 KIDLFLCEKK 1463
>gi|407852687|gb|EKG06051.1| RNA polymerase IIA largest subunit, putative, partial [Trypanosoma
cruzi]
Length = 1588
Score = 164 bits (414), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 165/302 (54%), Gaps = 39/302 (12%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ +++D IE M +D + IR+ K D D++ +++ +
Sbjct: 1071 MKDVKQAILRVDDGY---VIETGMANDTKERTIRM----RPKKNDGVDSIPRLKHAI--- 1120
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT---ESGEFKAIADWLLETDGTSL 1544
+L+ + L+GI + K + K R T +G+ K WL++TDGT+L
Sbjct: 1121 ---PELLARVHLRGIPGVRKALL-------KDRTTFTVDPATGKMKGEKTWLIDTDGTAL 1170
Query: 1545 ----MKVLSERD---VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
+ ++ E+ ++ RT SN + E+ +LGIEA R + E+ YGL +NYR
Sbjct: 1171 RRAFIGIVDEKGNNIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYR 1230
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQD-TGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
H +L D + +G+LMA++R GINR + +G LMRCSFEETV VLM AAA E DP+RGVS
Sbjct: 1231 HYTVLVDTICQRGYLMAVSRVGINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVS 1290
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGI--EIPLATGMMGGPAGMFFGSAAT---PSSM 1711
N+++G R+GTG FDL+L+ + + E +A G ++ G A+T PSSM
Sbjct: 1291 ANLVLGNQARIGTGLFDLVLNMAALQQAVPQEDAVAPGKE---VNVYHGLASTQNLPSSM 1347
Query: 1712 IH 1713
+
Sbjct: 1348 PY 1349
>gi|169806355|ref|XP_001827922.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
gi|161778990|gb|EDQ31017.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
Length = 1541
Score = 163 bits (412), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 119/188 (63%), Gaps = 18/188 (9%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L ++ +QG+E I K Y+ + D+ W L+TDG + +LS +V
Sbjct: 1186 LLNIHIQGLEGIKKAYLIHNKDDT-----------------WTLQTDGINYQTILSFPNV 1228
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D T SND+ EI++ LG+EA+R+++ E+ V++ G YVN RHL+LL DVMT G+
Sbjct: 1229 DGSHTTSNDLFEIYETLGVEALRETIMTELTMVIENNGSYVNSRHLSLLSDVMTVCGYPS 1288
Query: 1614 AITRHGINRQ-DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
ITRHG+NR+ AL R SFEETVD+L++AAA AE +P G++ENI+MGQL +GTG
Sbjct: 1289 GITRHGVNREIKASALKRASFEETVDILLEAAATAEENPAHGITENIMMGQLAPLGTGNI 1348
Query: 1673 DLLLDAEK 1680
L+LD +K
Sbjct: 1349 QLILDIKK 1356
>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
Length = 1557
Score = 163 bits (412), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 121/196 (61%), Gaps = 16/196 (8%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N L + L G + + KVY+ D +R +W L+TDG L +VL
Sbjct: 1240 NTLLKLQLGGYKNVKKVYI---SEDKDRR-------------EWYLQTDGICLPQVLGNP 1283
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
V+ T SND+ EI + LGIEA R+S+ +E+ V+ G YVNYRH++LL DVMT +G+
Sbjct: 1284 AVNSRLTVSNDLIEIAETLGIEAARESILRELAIVIDGNGSYVNYRHMSLLADVMTMRGY 1343
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
L ITRHG+N+ GAL R SFEETV++L+DAA +E + RG++ENI+MGQL MGTG
Sbjct: 1344 LCGITRHGVNKAGAGALKRSSFEETVEILLDAALVSEKNLCRGITENIMMGQLAPMGTGN 1403
Query: 1672 FDLLLDAEKCKDGIEI 1687
+++LD +K I +
Sbjct: 1404 VEIMLDVKKLDKAIPL 1419
>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
hellem]
Length = 1478
Score = 163 bits (412), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 121/196 (61%), Gaps = 16/196 (8%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N L + L G + + KVY+ D +R +W L+TDG L +VL
Sbjct: 1240 NTLLKLQLGGYKNVKKVYI---SEDKDRR-------------EWYLQTDGICLPQVLGNP 1283
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
V+ T SND+ EI + LGIEA R+S+ +E+ V+ G YVNYRH++LL DVMT +G+
Sbjct: 1284 AVNSRLTVSNDLIEIAETLGIEAARESILRELAIVIDGNGSYVNYRHMSLLADVMTMRGY 1343
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
L ITRHG+N+ GAL R SFEETV++L+DAA +E + RG++ENI+MGQL MGTG
Sbjct: 1344 LCGITRHGVNKAGAGALKRSSFEETVEILLDAALVSEKNLCRGITENIMMGQLAPMGTGN 1403
Query: 1672 FDLLLDAEKCKDGIEI 1687
+++LD +K I +
Sbjct: 1404 VEIMLDVKKLDKAIPL 1419
>gi|13310932|gb|AAF36438.2|AF126254_1 RNA polymerase II largest subunit [Leishmania donovani]
Length = 1665
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 152/272 (55%), Gaps = 26/272 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++ DD ++ ++ANM +D RI+ K D+V + +
Sbjct: 1208 MKDVKSAIRQV-DDTYM--VQANMENDGQ----RIVRLRPRKCTGA-DSVPALTKAV--- 1256
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
A +L + +GI I K + + + E+G K + W+++T+GT+L ++
Sbjct: 1257 ---AQLLQSVHHRGIPGIKKTLL----KEGNTFRVDPETGGIKNESSWMVDTEGTALQRI 1309
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ +D +T SN I E+ VLGIEA R+ + E+ YGL +NYRH
Sbjct: 1310 FVGVVNNEGKNIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYT 1369
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D M +G+LMA++R GINR +T G LMRCSFEETV VLM AAA E DP+RGVS ++
Sbjct: 1370 ILVDTMCQRGYLMAVSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASL 1429
Query: 1660 IMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
++G R+GTG FDLLLD K + + + AT
Sbjct: 1430 VLGNQARIGTGLFDLLLDMSKLQHVVPLDKAT 1461
>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 1543
Score = 162 bits (410), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 121/196 (61%), Gaps = 16/196 (8%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N L L G + I KVY+ ++ K R +W L+TDG L ++L
Sbjct: 1240 NSLLKFQLGGYKNIKKVYI----SEDKNR------------KEWYLQTDGICLPQILGNP 1283
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
V+ T SND+ EI + LGIEA R+S+ +E+ V+ G YVNYRH++LL DVMT +G+
Sbjct: 1284 SVNSQLTTSNDLIEIAETLGIEAARESILRELAIVIDGNGSYVNYRHMSLLADVMTMRGY 1343
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
L ITRHG+N+ GAL R SFEETV++L+DAA +E + RG++ENI+MGQL MGTG
Sbjct: 1344 LCGITRHGVNKVGAGALKRSSFEETVEILLDAALVSEKNLCRGITENIMMGQLAPMGTGN 1403
Query: 1672 FDLLLDAEKCKDGIEI 1687
+++LD +K I +
Sbjct: 1404 VEIMLDVKKLDKAIPL 1419
>gi|145490118|ref|XP_001431060.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398162|emb|CAK63662.1| unnamed protein product [Paramecium tetraurelia]
Length = 1750
Score = 162 bits (409), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 1527 GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTV 1586
G++K I +L ET+GT+L ++L VD RT ++D+ EI QVLGIEA R ++ E +
Sbjct: 1382 GKWKIIEKYL-ETEGTNLKEILRLEHVDQRRTTTDDVYEISQVLGIEAARAALVGETRKI 1440
Query: 1587 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR-QDTGALMRCSFEETVDVLMDAAA 1645
YG+Y+NYRHL LL D MT +G L A+ R+GINR + L + SFEETV++L DAA
Sbjct: 1441 FNHYGIYINYRHLYLLYDWMTHRGRLTAVNRNGINRIPEVSVLRKSSFEETVEILYDAAV 1500
Query: 1646 HAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
+E D MRG+SENII GQL GTGCF+L+++A+ K+
Sbjct: 1501 FSEIDHMRGLSENIIFGQLCPHGTGCFELMVNAKNVKE 1538
>gi|452819030|gb|EME26138.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
sulphuraria]
Length = 1275
Score = 162 bits (409), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 134/221 (60%), Gaps = 11/221 (4%)
Query: 1464 NSDDSKMQDEEDAVDK------MEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
++D++K +E+ V++ D+ F + +EA++ +++ +GI I + YM +
Sbjct: 760 HNDNAKEWTQEENVNEDNDDEXTNDERFXKKVEAHLXTNLHXRGIPGIHRAYMR----XT 815
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K + + +G F +W+L+T+GT+L+ VLS D RT SND+ E++++ G+EA R
Sbjct: 816 KXKQVDLHTGSFXTTDEWVLDTEGTNLLAVLSHPAXDARRTXSNDVXEVYEIXGVEAARA 875
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
+ E+ V++ YG NYRH A+L D T +G L + TRHG NR + GAL + SFEETV
Sbjct: 876 LLLSEIRAVMEPYGXDXNYRHXAILADXXTHRGFLQSXTRHGXNRVERGALAKSSFEETV 935
Query: 1638 DVLMDAAAHAEADPMR-GVSENIIMGQLPRMGTGCFDLLLD 1677
D+L++AA E D R V+ENI MGQ+ GTG F +L +
Sbjct: 936 DILLEAATFGELDDFRNSVTENIXMGQMCNFGTGSFGVLXN 976
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 8/79 (10%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIM--NSDDSKMQDEEDAVDK------MEDD 55
I+ + N FG+D +CI++DDNAEKLVLRIR + ++D++K +E+ V++ D+
Sbjct: 726 IAAQXNNEFGEDXDCIYSDDNAEKLVLRIRXVEAHNDNAKEWTQEENVNEDNDDEXTNDE 785
Query: 56 MFLRCIEANMLSDMTLQFI 74
F + +EA++ +++ + I
Sbjct: 786 RFXKKVEAHLXTNLHXRGI 804
>gi|74830406|emb|CAI39063.1| DNA-directed RNA polymerase II largest subunit [Paramecium
tetraurelia]
Length = 1751
Score = 162 bits (409), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 1527 GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTV 1586
G++K I +L ET+GT+L ++L VD RT ++D+ EI QVLGIEA R ++ E +
Sbjct: 1382 GKWKIIEKYL-ETEGTNLKEILRLEHVDQRRTTTDDVYEISQVLGIEAARAALVGETRKI 1440
Query: 1587 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR-QDTGALMRCSFEETVDVLMDAAA 1645
YG+Y+NYRHL LL D MT +G L A+ R+GINR + L + SFEETV++L DAA
Sbjct: 1441 FNHYGIYINYRHLYLLYDWMTHRGRLTAVNRNGINRIPEVSVLRKSSFEETVEILYDAAV 1500
Query: 1646 HAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
+E D MRG+SENII GQL GTGCF+L+++A+ K+
Sbjct: 1501 FSEIDHMRGLSENIIFGQLCPHGTGCFELMVNAKNVKE 1538
>gi|316997007|dbj|BAJ52631.1| RNA polymerase II largest subunit [Paramecium tetraurelia]
Length = 1121
Score = 161 bits (407), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 1464 NSDDSKMQDEEDAVDKMEDDMF--LRCIEANMLSDMTLQGIEAIGKV---------YMHL 1512
N DD DEE+ D + L+ +E + +L GI I ++ Y++
Sbjct: 826 NFDDEIAFDEENKTKTYVDTPYTILKRLEET-IRGYSLGGISKITRILHSQIEKQFYINN 884
Query: 1513 PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1572
K+ + G++K I +L ET+GT+L ++L VD RT ++D+ EI QVLGI
Sbjct: 885 KTGGFLKQANVDGKGKWKIIEKYL-ETEGTNLKEILRLEHVDQRRTTTDDVYEISQVLGI 943
Query: 1573 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR-QDTGALMRC 1631
EA R ++ E + YG+Y+NYRHL LL D MT +G L A+ R+GINR + L +
Sbjct: 944 EAARAALVGETRKIFNHYGIYINYRHLYLLYDWMTHRGRLTAVNRNGINRIPEVSVLRKS 1003
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
SFEETV++L DAA +E D MRG+SENII GQL GTGCF+L+ +A+ K+
Sbjct: 1004 SFEETVEILYDAAVFSEIDHMRGLSENIIFGQLCPHGTGCFELMGNAKNVKE 1055
>gi|71423780|ref|XP_812569.1| RNA polymerase IIA largest subunit [Trypanosoma cruzi strain CL
Brener]
gi|70877365|gb|EAN90718.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi]
Length = 1731
Score = 160 bits (406), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 164/302 (54%), Gaps = 39/302 (12%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ +++D IE M +D + IR+ K D D++ +++ +
Sbjct: 1216 MKDVKQAILRVDDGY---VIETGMANDTKERTIRM----RPKKNDGVDSIPRLKHAI--- 1265
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT---ESGEFKAIADWLLETDGTSL 1544
+L+ + L+GI + K + K R T +G+ WL++TDGT+L
Sbjct: 1266 ---PELLARVHLRGIPGVRKALL-------KDRTTFTVDPATGKMTGEKTWLIDTDGTAL 1315
Query: 1545 ----MKVLSERD---VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
+ ++ E+ ++ RT SN + E+ +LGIEA R + E+ YGL +NYR
Sbjct: 1316 RRAFIGIVDEKGNNIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYR 1375
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQD-TGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
H +L D + +G+LMA++R GINR + +G LMRCSFEETV VLM AAA E DP+RGVS
Sbjct: 1376 HYTILVDTICQRGYLMAVSRVGINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVS 1435
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGI--EIPLATGMMGGPAGMFFGSAAT---PSSM 1711
N+++G R+GTG FDL+L+ + + E +A G ++ G A+T PSSM
Sbjct: 1436 ANLVLGNQARIGTGLFDLVLNMAALQQAVPQEDAVAPGKE---VNVYHGLASTQNLPSSM 1492
Query: 1712 IH 1713
+
Sbjct: 1493 PY 1494
>gi|22002086|gb|AAK97604.2|AF372503_1 RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 160 bits (406), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 164/302 (54%), Gaps = 39/302 (12%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ +++D IE M +D + IR+ K D D++ +++ +
Sbjct: 1216 MKDVKQAILRVDDGY---VIETGMANDTKERTIRM----RPKKNDGVDSIPRLKHAI--- 1265
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT---ESGEFKAIADWLLETDGTSL 1544
+L+ + L+GI + K + K R T +G+ WL++TDGT+L
Sbjct: 1266 ---PELLARVHLRGIPGVRKALL-------KDRTTFTVDPATGKMTGEKTWLIDTDGTAL 1315
Query: 1545 ----MKVLSERD---VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
+ ++ E+ ++ RT SN + E+ +LGIEA R + E+ YGL +NYR
Sbjct: 1316 RRAFIGIVDEKGNNIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYR 1375
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQD-TGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
H +L D + +G+LMA++R GINR + +G LMRCSFEETV VLM AAA E DP+RGVS
Sbjct: 1376 HYTILVDTICQRGYLMAVSRVGINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVS 1435
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGI--EIPLATGMMGGPAGMFFGSAAT---PSSM 1711
N+++G R+GTG FDL+L+ + + E +A G ++ G A+T PSSM
Sbjct: 1436 ANLVLGNQARIGTGLFDLVLNMAALQQAVPQEDAVAPGKE---VNVYHGLASTQNLPSSM 1492
Query: 1712 IH 1713
+
Sbjct: 1493 PY 1494
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|51702033|sp|Q8SSC4.1|RPB1_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 160 bits (406), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 117/172 (68%), Gaps = 5/172 (2%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
K++ I+E + K +W L+TDG L ++L V+ T SND+ EI + LGIEA R+S
Sbjct: 1254 KKVYISEDKDRK---EWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARES 1310
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E+ V+ G YVNYRH++LL DVMT +G+L ITRHG+N+ GAL R SFEETV+
Sbjct: 1311 ILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVE 1370
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA 1690
+L+DAA +E + RG++ENI+MGQL MGTG +++LD +K IPL+
Sbjct: 1371 ILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDK--AIPLS 1420
>gi|23345055|gb|AAN17722.1| RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 160 bits (406), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 164/302 (54%), Gaps = 39/302 (12%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ +++D IE M +D + IR+ K D D++ +++ +
Sbjct: 1216 MKDVKQAILRVDDGY---VIETGMANDTKERTIRM----RPKKNDGVDSIPRLKHAI--- 1265
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT---ESGEFKAIADWLLETDGTSL 1544
+L+ + L+GI + K + K R T +G+ WL++TDGT+L
Sbjct: 1266 ---PELLARVHLRGIPGVRKALL-------KDRTTFTVDPATGKMTGEKTWLIDTDGTAL 1315
Query: 1545 ----MKVLSERD---VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
+ ++ E+ ++ RT SN + E+ +LGIEA R + E+ YGL +NYR
Sbjct: 1316 RRAFIGIVDEKGNNIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYR 1375
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQD-TGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
H +L D + +G+LMA++R GINR + +G LMRCSFEETV VLM AAA E DP+RGVS
Sbjct: 1376 HYTILVDTICQRGYLMAVSRVGINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVS 1435
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGI--EIPLATGMMGGPAGMFFGSAAT---PSSM 1711
N+++G R+GTG FDL+L+ + + E +A G ++ G A+T PSSM
Sbjct: 1436 ANLVLGNQARIGTGLFDLVLNMAALQQAVPQEDAVAPGKE---VNVYHGLASTQNLPSSM 1492
Query: 1712 IH 1713
+
Sbjct: 1493 PY 1494
>gi|407418760|gb|EKF38234.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 1733
Score = 160 bits (405), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 147/261 (56%), Gaps = 31/261 (11%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ +++D IE M +D + IR+ K D D++ +++ +
Sbjct: 1216 MKDVKQAILRVDDGY---VIETGMANDTKERTIRM----RPKKNDGVDSIPRLKQAI--- 1265
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIIT---ESGEFKAIADWLLETDGTSL 1544
+L+ + L+GI + K + K R T +G+ WL++TDGT+L
Sbjct: 1266 ---PELLARVHLRGIPGVRKALL-------KDRTTFTVDPATGKMTGEKTWLIDTDGTAL 1315
Query: 1545 ----MKVLSERD---VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
+ ++ E+ ++ RT SN + E+ +LGIEA R + E+ YGL +NYR
Sbjct: 1316 RRAFIGIVDEKGNNIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYR 1375
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQD-TGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
H +L D + +G+LMA++R GINR + +G LMRCSFEETV VLM AAA E DP+RGVS
Sbjct: 1376 HYTILVDTICQRGYLMAVSRVGINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVS 1435
Query: 1657 ENIIMGQLPRMGTGCFDLLLD 1677
N+++G R+GTG FDL+L+
Sbjct: 1436 ANLVLGNQARIGTGLFDLVLN 1456
>gi|449329642|gb|AGE95912.1| DNA-directed RNA polymerase II, partial [Encephalitozoon cuniculi]
Length = 1487
Score = 160 bits (405), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 115/169 (68%), Gaps = 3/169 (1%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
K++ I+E + K +W L+TDG L ++L V+ T SND+ EI + LGIEA R+S
Sbjct: 1254 KKVYISEDKDRK---EWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARES 1310
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E+ V+ G YVNYRH++LL DVMT +G+L ITRHG+N+ GAL R SFEETV+
Sbjct: 1311 ILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVE 1370
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 1687
+L+DAA +E + RG++ENI+MGQL MGTG +++LD +K I +
Sbjct: 1371 ILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDKAIPL 1419
>gi|162215|gb|AAA30229.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|261327848|emb|CBH10825.1| RNA polymerase IIA largest subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 1765
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 148/258 (57%), Gaps = 25/258 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++++ IE M +++ + IR+ S+ + D++ K++ R
Sbjct: 1232 MKDVKQAILRVDESYI---IETGMANNVRQRTIRM----RSRYNEGADSIPKLK-----R 1279
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT+L +
Sbjct: 1280 EIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGTALRRA 1334
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ ++ V+T SN + E+ +LGIEA R + E+ YGL +NYRH
Sbjct: 1335 FIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYT 1394
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RGVS N+
Sbjct: 1395 ILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANL 1454
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
++G R+GTG FDL+L+
Sbjct: 1455 VLGNQARVGTGLFDLVLN 1472
>gi|133329|sp|P17545.1|RPB1B_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-B;
Short=RNA polymerase II subunit B1-B; AltName:
Full=DNA-directed RNA polymerase II largest subunit B
gi|10503|emb|CAA31847.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 148/258 (57%), Gaps = 25/258 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++++ IE M +++ + IR+ S+ + D++ K++ R
Sbjct: 1233 MKDVKQAILRVDESYI---IETGMANNVRQRTIRM----RSRYNEGADSIPKLK-----R 1280
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT+L +
Sbjct: 1281 EIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGTALRRA 1335
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ ++ V+T SN + E+ +LGIEA R + E+ YGL +NYRH
Sbjct: 1336 FIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYT 1395
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RGVS N+
Sbjct: 1396 ILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANL 1455
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
++G R+GTG FDL+L+
Sbjct: 1456 VLGNQARVGTGLFDLVLN 1473
>gi|399949936|gb|AFP65592.1| DNA-directed RNA polymerase II largest chain [Chroomonas
mesostigmatica CCMP1168]
Length = 1473
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 121/188 (64%), Gaps = 10/188 (5%)
Query: 1496 DMTLQGIEAIGKVYMH---LPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
++ + G I K + P+ D K G F++ +++L+T+G L +L+
Sbjct: 1284 NLKIHGTSKIKKALIRKIDFPKFDPLK-------GSFRSQKEYVLDTEGVDLRYILNFPG 1336
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
+D +R+ SNDI EIF++LG+EA R+ + +E+ ++ F G YVN RHL LL D+MT +G L
Sbjct: 1337 MDHIRSSSNDIVEIFRILGVEASRRILIQELRNLISFDGSYVNSRHLYLLVDIMTHRGKL 1396
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
++ITRHGIN+ + G + +CSFEET+D+L AAA +D ++ +S ++++GQLP +GTG
Sbjct: 1397 LSITRHGINKTEIGPIAKCSFEETIDILYQAAAFGISDNLKSISASVLLGQLPLLGTGKI 1456
Query: 1673 DLLLDAEK 1680
DL L +K
Sbjct: 1457 DLFLSEKK 1464
>gi|72388454|ref|XP_844651.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62360128|gb|AAX80548.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70801184|gb|AAZ11092.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1765
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 148/258 (57%), Gaps = 25/258 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++++ IE M +++ + IR+ S+ + D++ K++ R
Sbjct: 1232 MKDVKQAILRVDESYI---IETGMANNVRQRTIRM----RSRYNEGADSIPKLK-----R 1279
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT+L +
Sbjct: 1280 EIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGTALRRA 1334
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ ++ V+T SN + E+ +LGIEA R + E+ YGL +NYRH
Sbjct: 1335 FIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYT 1394
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RGVS N+
Sbjct: 1395 ILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANL 1454
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
++G R+GTG FDL+L+
Sbjct: 1455 VLGNQARVGTGLFDLVLN 1472
>gi|162221|gb|AAA30232.1| RNA polymerase IIB largest subunit [Trypanosoma brucei]
Length = 1765
Score = 158 bits (400), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 148/258 (57%), Gaps = 25/258 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++++ IE M +++ + IR+ S+ + D++ K++ R
Sbjct: 1232 MKDVKQAILRVDESYI---IETGMANNVRQRTIRM----RSRYNEGADSIPKLK-----R 1279
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT+L +
Sbjct: 1280 EIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGTALRRA 1334
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ ++ V+T SN + E+ +LGIEA R + E+ YGL +NYRH
Sbjct: 1335 FIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYT 1394
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RGVS N+
Sbjct: 1395 ILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANL 1454
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
++G R+GTG FDL+L+
Sbjct: 1455 VLGNQARVGTGLFDLVLN 1472
>gi|342183052|emb|CCC92532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1754
Score = 158 bits (400), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 18/214 (8%)
Query: 1472 DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA 1531
D D++ K++ D+ +L+ + L+GI + + + D+ K + +G+
Sbjct: 1268 DGADSIPKLKRDI------PALLARVHLRGIPGVRRALL----KDTTKFTVDESTGKLTG 1317
Query: 1532 IADWLLETDGTSLMKVL-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
W+++TDGT+L + + ++ +T SN + E+ +LGIEA R + E+
Sbjct: 1318 EKTWVIDTDGTALRRAFIGVVGEDGKNIINATKTSSNKVPEVCSLLGIEAARYRMLTELR 1377
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDA 1643
YGL +NYRH +L D + +G+LMA++R GINR DT G LMRCSFEETV VLM A
Sbjct: 1378 EAYLAYGLNINYRHYTILVDTICQRGYLMAVSRTGINRSDTSGPLMRCSFEETVKVLMAA 1437
Query: 1644 AAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
A+ E DP+RGVS N+++G R+GTG FDL+++
Sbjct: 1438 ASFGEHDPVRGVSANLVLGNQARVGTGLFDLIIN 1471
>gi|133332|sp|P17546.1|RPB1A_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-A;
Short=RNA polymerase II subunit B1-A; AltName:
Full=DNA-directed RNA polymerase II largest subunit A
gi|10505|emb|CAA31846.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 158 bits (400), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 148/258 (57%), Gaps = 25/258 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++++ IE M +++ + IR+ S+ + D++ K++ R
Sbjct: 1233 MKDVKQAILRVDESYI---IETGMANNVRQRTIRM----RSRYNEGADSIPKLK-----R 1280
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT+L +
Sbjct: 1281 EIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGTALRRA 1335
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ ++ V+T SN + E+ +LGIEA R + E+ YGL +NYRH
Sbjct: 1336 FIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYT 1395
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RGVS N+
Sbjct: 1396 ILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANL 1455
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
++G R+GTG FDL+L+
Sbjct: 1456 VLGNQARVGTGLFDLVLN 1473
>gi|342180836|emb|CCC90312.1| putative RNA polymerase IIA largest subunit [Trypanosoma congolense
IL3000]
Length = 1756
Score = 158 bits (399), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 18/214 (8%)
Query: 1472 DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA 1531
D D++ K++ D+ +L+ + L+GI + + + D+ K + +G+
Sbjct: 1270 DGADSIPKLKRDI------PALLARVHLRGIPGVRRALL----KDTTKFTVDESTGKLTG 1319
Query: 1532 IADWLLETDGTSLMKVL-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
W+++TDGT+L + + ++ +T SN + E+ +LGIEA R + E+
Sbjct: 1320 EKTWVIDTDGTALRRAFIGVVGEDGKNIINATKTSSNKVPEVCSLLGIEAARYRMLTELR 1379
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDA 1643
YGL +NYRH +L D + +G+LMA++R GINR DT G LMRCSFEETV VLM A
Sbjct: 1380 EAYLAYGLNINYRHYTILVDTICQRGYLMAVSRTGINRSDTSGPLMRCSFEETVKVLMAA 1439
Query: 1644 AAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
A+ E DP+RGVS N+++G R+GTG FDL+++
Sbjct: 1440 ASFGEHDPVRGVSANLVLGNQARVGTGLFDLIIN 1473
>gi|342183053|emb|CCC92533.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1230
Score = 158 bits (399), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 18/214 (8%)
Query: 1472 DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKA 1531
D D++ K++ D+ +L+ + L+GI + + + D+ K + +G+
Sbjct: 744 DGADSIPKLKRDI------PALLARVHLRGIPGVRRALL----KDTTKFTVDESTGKLTG 793
Query: 1532 IADWLLETDGTSLMKVL-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
W+++TDGT+L + + ++ +T SN + E+ +LGIEA R + E+
Sbjct: 794 EKTWVIDTDGTALRRAFIGVVGEDGKNIINATKTSSNKVPEVCSLLGIEAARYRMLTELR 853
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDA 1643
YGL +NYRH +L D + +G+LMA++R GINR DT G LMRCSFEETV VLM A
Sbjct: 854 EAYLAYGLNINYRHYTILVDTICQRGYLMAVSRTGINRSDTSGPLMRCSFEETVKVLMAA 913
Query: 1644 AAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
A+ E DP+RGVS N+++G R+GTG FDL+++
Sbjct: 914 ASFGEHDPVRGVSANLVLGNQARVGTGLFDLIIN 947
>gi|72393537|ref|XP_847569.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62175081|gb|AAX69230.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70803599|gb|AAZ13503.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1765
Score = 157 bits (396), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 148/258 (57%), Gaps = 25/258 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++++ IE M +++ + IR+ S+ + D++ +++ R
Sbjct: 1232 MKDVKQAILRVDESYI---IETGMANNVRQRTIRM----RSRYNEGADSIPQLK-----R 1279
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT+L +
Sbjct: 1280 EIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGTALRRA 1334
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ ++ V+T SN + E+ +LGIEA R + E+ YGL +NYRH
Sbjct: 1335 FIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYT 1394
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RGVS N+
Sbjct: 1395 ILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANL 1454
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
++G R+GTG FDL+L+
Sbjct: 1455 VLGNQARVGTGLFDLVLN 1472
>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
Length = 1605
Score = 154 bits (390), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 103/157 (65%), Gaps = 2/157 (1%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W L+TDG + ++ S +V+ SND+ EI +VLGIEA R+++ E+ V+ G Y
Sbjct: 1266 EWYLQTDGVCIREIFSHPNVEGHLVTSNDLNEIVEVLGIEAARETILNELTLVIDGNGSY 1325
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
VN+RH++LL DVMT KG+L ITRHG+N+ G R SFEETVD+L+DAA AE +
Sbjct: 1326 VNHRHISLLADVMTMKGYLTGITRHGVNKVGFGCTKRASFEETVDILLDAALVAEKYVTK 1385
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA 1690
G +ENI+MG L +GTG +LLLD K IPL+
Sbjct: 1386 GYTENIMMGHLAPLGTGIGNLLLDVSKLDKA--IPLS 1420
>gi|157841448|gb|ABV83187.1| RNA polymerase 2 [Bursilla sp. PS1179]
Length = 118
Score = 154 bits (390), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/109 (66%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQGIE I KVYMH P TD KK
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGIEQITKVYMHKPTTDDKK 69
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQ 1568
RI+IT G FKAI +WLLETDGT+L++VLS+ +VDP+RT SNDICEIF+
Sbjct: 70 RIVITPEGGFKAIPEWLLETDGTALLQVLSQPNVDPIRTTSNDICEIFE 118
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 22 DDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 74
DDNA+ LV RIRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 1 DDNADNLVFRIRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 74 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 116
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
Score = 48.5 bits (114), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRI+ +DD D E+ VD+MEDD FLR +E NMLSD+TLQ I
Sbjct: 11 IRIV-ADDQDKGDTEEQVDRMEDDAFLRALEQNMLSDLTLQGI 52
>gi|157841406|gb|ABV83159.1| RNA polymerase 2 [Rhabditoides inermis]
Length = 104
Score = 154 bits (389), Expect = 5e-34, Method: Composition-based stats.
Identities = 78/104 (75%), Positives = 89/104 (85%)
Query: 1501 GIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1560
GIEAI KVYMH P TD KK+I+IT G FKAI WLLETDGT+L+KVLSER+VD +RT S
Sbjct: 1 GIEAIAKVYMHKPTTDDKKKIVITPDGSFKAIEQWLLETDGTALLKVLSERNVDTIRTTS 60
Query: 1561 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCD 1604
NDICEIF++LGIEAVRKS+EKEM+ V+ F G YVNYRHLALLCD
Sbjct: 61 NDICEIFEILGIEAVRKSIEKEMHQVISFDGSYVNYRHLALLCD 104
>gi|118348890|ref|XP_001007918.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila]
gi|89289685|gb|EAR87673.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena thermophila
SB210]
Length = 1759
Score = 152 bits (385), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 116/203 (57%), Gaps = 16/203 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIII---------TESGEF---KAIADWLLETDG 1541
D + GI+ I KVY P + R + F + + + T G
Sbjct: 1340 FKDAYIGGIQKIQKVY---PTQKKEFRPWVENECICEAPKPGAAFFTERKPQEHIFNTSG 1396
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
++L +VL VD RT+SNDI EI +LGIEA R+S+ ++ V++ YG+Y+NYRHLA+
Sbjct: 1397 SNLKEVLKVDKVDATRTYSNDIQEIITILGIEAGRRSIVNQIRVVIEPYGIYINYRHLAI 1456
Query: 1602 LCDVMTAKGHLMAITRHGINR-QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
L + MT +G L I R+GINR L + SFEETVD+L AA E D ++GV+ENII
Sbjct: 1457 LAEWMTVRGRLTPINRNGINRIPGLSCLRKSSFEETVDILNTAAIFFEKDDLKGVTENII 1516
Query: 1661 MGQLPRMGTGCFDLLLDAEKCKD 1683
GQ +GTGCFDLL+D K +
Sbjct: 1517 FGQNCDIGTGCFDLLVDLNKVGE 1539
>gi|402468610|gb|EJW03738.1| hypothetical protein EDEG_01976 [Edhazardia aedis USNM 41457]
Length = 2270
Score = 152 bits (383), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 142/269 (52%), Gaps = 50/269 (18%)
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
KK I+ E+ +F + +T+G +L +LS +D + +SN+I E+ +VLGIEA R+
Sbjct: 1759 KKVFIVEENNQF------IFQTEGVNLHDLLSCPIIDNTKVYSNNIIEVCEVLGIEAARE 1812
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
+ KE+ +V++ G YVN RHL LL DVMT G L ITRHG+NR + ALMRCSFEETV
Sbjct: 1813 VILKELRSVIENEG-YVNIRHLMLLADVMTVNGILCGITRHGVNRNEKSALMRCSFEETV 1871
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI---------- 1687
++LM+AA E R V+E II+GQ +GTG +L +D +K KD +EI
Sbjct: 1872 EILMEAAIIGEKTQCREVTECIILGQNVPIGTGLTELFIDIQKLKDAVEICDKDFELEVR 1931
Query: 1688 -------PLATGMMG-----GPAGMFFGSAATPS----------SMIHNPLQTPHNTSLT 1725
P+ G+ P G + ++PS S ++P+ +NTS
Sbjct: 1932 SPNSGYSPI-IGLWSPIPEDSPLGKAYKIESSPSHSTQGGYSPISAGYSPISPGYNTS-P 1989
Query: 1726 NATHQSRDKAFA---------PSELFLSP 1745
NAT+ + PS + SP
Sbjct: 1990 NATYSPVSPGYGTIGGFSPSSPSYIPASP 2018
>gi|71402591|ref|XP_804193.1| RNA polymerase IIA largest subunit [Trypanosoma cruzi strain CL
Brener]
gi|70867032|gb|EAN82342.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi]
Length = 452
Score = 150 bits (380), Expect = 5e-33, Method: Composition-based stats.
Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 12/197 (6%)
Query: 1526 SGEFKAIADWLLETDGTSLMK----VLSERD---VDPVRTFSNDICEIFQVLGIEAVRKS 1578
+G+ K WL++TDGT+L + ++ E+ ++ RT SN + E+ +LGIEA R
Sbjct: 17 TGKMKGEKTWLIDTDGTALRRAFIGIVDEKGNNIINATRTSSNKVPEVCSLLGIEAARYK 76
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD-TGALMRCSFEETV 1637
+ E+ YGL +NYRH +L D + +G+LMA++R GINR + +G LMRCSFEETV
Sbjct: 77 MLHELREAYLAYGLNINYRHYTILVDTICQRGYLMAVSRVGINRSEMSGPLMRCSFEETV 136
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
VLM AAA E DP+RGVS N+++G R+GTG FDL+L+ + + A G
Sbjct: 137 KVLMAAAAFGERDPVRGVSANLVLGNQARIGTGLFDLVLNMAALQQAVPQEDAVA-PGKE 195
Query: 1698 AGMFFGSAAT---PSSM 1711
++ G A+T PSSM
Sbjct: 196 VNVYHGLASTQNLPSSM 212
>gi|71415835|ref|XP_809970.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70874433|gb|EAN88119.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 2493
Score = 150 bits (378), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 247/1469 (16%), Positives = 706/1469 (48%), Gaps = 14/1469 (0%)
Query: 62 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 121
E ++L D ++ ++ + + ++Q+ +DA+ + D + E ++L T + + ++ +
Sbjct: 544 EKHLLKDCPIKGFDVLATLERQLQERDDALAALNDKLEEYGREKSVLESRTSESVDVVVT 603
Query: 122 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDD 181
+ ++Q+ +DA+ ++D + E ++L T + + ++ + + ++Q+ DA+ ME
Sbjct: 604 LERQLQERDDALAALKDRLEEHSREKSVLESRTSESVDVVVTLERQLQESVDALAAMERQ 663
Query: 182 MFLRCIEANMLSDMTLQFIRIMNSDDSK--------------MQDEEDAVDKMEDDMFLR 227
+ R L D ++ R ++ +S+ +Q+ +DA+ + D +
Sbjct: 664 LQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEH 723
Query: 228 CIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM 287
E + L T + + + + + ++Q+ +DA+ ++D + E + L T + + +
Sbjct: 724 SREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSALESRTSESVDAL 783
Query: 288 NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 347
+ + ++Q+ +DA+ ++D + E + L T + + + + ++Q+ +DA+ ++
Sbjct: 784 AAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLSRQLQERDDALAALK 843
Query: 348 DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 407
D + E + L T + + + + + ++Q+ +DA+ ++D + E + L T
Sbjct: 844 DRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTS 903
Query: 408 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEED 467
+ + + + ++Q+ +DA+ + D + E + L T + + + + + + Q+ +D
Sbjct: 904 ESVDAVVTLRRQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQPQERDD 963
Query: 468 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 527
A+ ++D + E + L T + + + + ++Q+ +DA+ ++D + E +
Sbjct: 964 ALAALKDRLEEYSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSA 1023
Query: 528 LSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSK 587
L T + + + + + ++Q+ +DA+ + D + E + L T + + + + + +
Sbjct: 1024 LESRTSESVDALAAMERQLQERDDALAALNDRLEEYSREKSALESRTSESVDALAAMERR 1083
Query: 588 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 647
+Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+ + D +
Sbjct: 1084 LQERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQLQERDDALAALNDRLEEY 1143
Query: 648 CIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM 707
E + L T + + + + ++Q+ +DA+ ++D + E + L T + + +
Sbjct: 1144 GREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEHSREKSALESRTSESVDAL 1203
Query: 708 NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 767
+ + ++Q+ +DA+ + D + E + L T + + + + + + Q+ +DA+ +
Sbjct: 1204 AAMERQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQPQERDDALAALN 1263
Query: 768 DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 827
D + E + L T + + + + ++Q+ +DA+ ++D + E + L T
Sbjct: 1264 DRLEEYSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEHSREKSALESRTS 1323
Query: 828 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEED 887
+ + + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +D
Sbjct: 1324 ESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQLQERDD 1383
Query: 888 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 947
A+ + D + E + L T + + + + ++Q+ +DA+ ++D + E +
Sbjct: 1384 ALAALNDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYGREKSA 1443
Query: 948 LSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSK 1007
L T + + + + + ++Q+ +DA+ ++D + E + L T + + + + + +
Sbjct: 1444 LESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMERQ 1503
Query: 1008 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1067
+Q+ +DA+ + D + E + L T + + + + + ++Q+ +DA+ ++D +
Sbjct: 1504 LQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEY 1563
Query: 1068 CIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM 1127
E + L T + + + + ++Q+ +DA+ ++D + E + L T + + +
Sbjct: 1564 SREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVGAL 1623
Query: 1128 NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 1187
+ + ++Q+ +DA+ + D + E + L T + + + + ++Q+ +DA+ +
Sbjct: 1624 AAMERQLQERDDALAALNDRLEEYDREKSALESRTSESVDAVVTLRRQLQERDDALAALN 1683
Query: 1188 DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 1247
D + E + L T + + + + ++Q+ +DA+ ++D + E + L T
Sbjct: 1684 DRLEEYGREKSALESRTSGSVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTS 1743
Query: 1248 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEED 1307
+ + + + ++Q+ +DA+ + D + E + L T + + + + + ++Q+ +D
Sbjct: 1744 ESVDAVVTLRRQLQERDDALAALNDRLEEYGREKSALESRTSESVDALAAMERQLQERDD 1803
Query: 1308 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1367
A+ ++D + E ++L T + + + + + ++Q+ +DA+ ++D + E +
Sbjct: 1804 ALAALKDRLEEHSREKSVLESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSA 1863
Query: 1368 LSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSK 1427
L T + + + + ++Q+ +DA+ ++D + E + L T + + + + +
Sbjct: 1864 LESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQ 1923
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
+Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+ ++D +
Sbjct: 1924 LQERDDALAALKDRLEEYSREKSALESRTSESVDALAAMERQLQERDDALAALKDKLEEY 1983
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTD 1516
E + L T + ++A+ + L + D
Sbjct: 1984 GREKSALESRTSESVDAVVTLRRQLQERD 2012
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 251/1497 (16%), Positives = 718/1497 (47%), Gaps = 14/1497 (0%)
Query: 34 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDK 93
++ + + ++Q+ +DA+ + D + E ++L T + + ++ + + ++Q+ +DA+
Sbjct: 558 VLATLERQLQERDDALAALNDKLEEYGREKSVLESRTSESVDVVVTLERQLQERDDALAA 617
Query: 94 MEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 153
++D + E ++L T + + ++ + + ++Q+ DA+ ME + R L D
Sbjct: 618 LKDRLEEHSREKSVLESRTSESVDVVVTLERQLQESVDALAAMERQLQERDDALAALKDR 677
Query: 154 TLQFIRIMNSDDSK--------------MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 199
++ R ++ +S+ +Q+ +DA+ + D + E + L T +
Sbjct: 678 LEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEHSREKSALESRTSES 737
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAV 259
+ + + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+
Sbjct: 738 VDALAAMERQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMERQLQERDDAL 797
Query: 260 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 319
++D + E + L T + + + + ++Q+ +DA+ ++D + E + L
Sbjct: 798 AALKDRLEEYGREKSALESRTSESVDAVVTLSRQLQERDDALAALKDRLEEHSREKSALE 857
Query: 320 DMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQ 379
T + + + + + ++Q+ +DA+ ++D + E + L T + + + + ++Q
Sbjct: 858 SRTSESVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQLQ 917
Query: 380 DEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI 439
+ +DA+ + D + E + L T + + + + + + Q+ +DA+ ++D +
Sbjct: 918 ERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQPQERDDALAALKDRLEEYSR 977
Query: 440 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 499
E + L T + + + + ++Q+ +DA+ ++D + E + L T + + + +
Sbjct: 978 EKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVDALAA 1037
Query: 500 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDD 559
+ ++Q+ +DA+ + D + E + L T + + + + + ++Q+ +DA+ ++D
Sbjct: 1038 MERQLQERDDALAALNDRLEEYSREKSALESRTSESVDALAAMERRLQERDDALAALKDR 1097
Query: 560 MFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 619
+ E + L T + + + + + ++Q+ +DA+ + D + E + L T +
Sbjct: 1098 LEEYSREKSALESRTSESVGALAAMERQLQERDDALAALNDRLEEYGREKSALESRTSES 1157
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAV 679
+ + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+
Sbjct: 1158 VDAVVTLRRQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMERQLQERDDAL 1217
Query: 680 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 739
+ D + E + L T + + + + + + Q+ +DA+ + D + E + L
Sbjct: 1218 AALNDRLEEHSREKSALESRTSESVDALAAMERQPQERDDALAALNDRLEEYSREKSALE 1277
Query: 740 DMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQ 799
T + + + + ++Q+ +DA+ ++D + E + L T + + + + ++Q
Sbjct: 1278 SRTSESVDAVVTLRRQLQERDDALAALKDRLEEHSREKSALESRTSESVDAVVTLRRQLQ 1337
Query: 800 DEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI 859
+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+ + D +
Sbjct: 1338 ERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQLQERDDALAALNDRLEEYGR 1397
Query: 860 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 919
E + L T + + + + ++Q+ +DA+ ++D + E + L T + + + +
Sbjct: 1398 EKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYGREKSALESRTSESVDALAA 1457
Query: 920 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDD 979
+ ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+ + D
Sbjct: 1458 MERQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALNDR 1517
Query: 980 MFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 1039
+ E + L T + + + + + ++Q+ +DA+ ++D + E + L T +
Sbjct: 1518 LEEHSREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEYSREKSALESRTSES 1577
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAV 1099
+ + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+
Sbjct: 1578 VDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQLQERDDAL 1637
Query: 1100 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1159
+ D + E + L T + + + + ++Q+ +DA+ + D + E + L
Sbjct: 1638 AALNDRLEEYDREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEYGREKSALE 1697
Query: 1160 DMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQ 1219
T + + + + ++Q+ +DA+ ++D + E + L T + + + + ++Q
Sbjct: 1698 SRTSGSVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQLQ 1757
Query: 1220 DEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI 1279
+ +DA+ + D + E + L T + + + + + ++Q+ +DA+ ++D +
Sbjct: 1758 ERDDALAALNDRLEEYGREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEHSR 1817
Query: 1280 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 1339
E ++L T + + + + + ++Q+ +DA+ ++D + E + L T + + + +
Sbjct: 1818 EKSVLESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSALESRTSESVDAVVT 1877
Query: 1340 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDD 1399
++Q+ +DA+ ++D + E + L T + + + + ++Q+ +DA+ ++D
Sbjct: 1878 LRRQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALKDR 1937
Query: 1400 MFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 1459
+ E + L T + + + + + ++Q+ +DA+ ++D + E + L T +
Sbjct: 1938 LEEYSREKSALESRTSESVDALAAMERQLQERDDALAALKDKLEEYGREKSALESRTSES 1997
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1516
+ + + ++Q+ +DA+ + D + E + L T + ++A+ + L + D
Sbjct: 1998 VDAVVTLRRQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQLQERD 2054
Score = 144 bits (364), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 256/1505 (17%), Positives = 714/1505 (47%), Gaps = 20/1505 (1%)
Query: 26 EKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQ 85
EKL L+ RI+ + SK E K+ ++ + E N + T I+ + DS
Sbjct: 472 EKLQLQQRILINTRSKNMGETQLRQKLSQEIDTKEREDNNRNAKTFTRIKHFYTQDSPR- 530
Query: 86 DEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI 145
++ + E ++L D ++ ++ + + ++Q+ +DA+ + D +
Sbjct: 531 -----TPPVQRRLDFSGKEKHLLKDCPIKGFDVLATLERQLQERDDALAALNDKLEEYGR 585
Query: 146 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 205
E ++L T + + ++ + + ++Q+ +DA+ ++D + E ++L T + + ++ +
Sbjct: 586 EKSVLESRTSESVDVVVTLERQLQERDDALAALKDRLEEHSREKSVLESRTSESVDVVVT 645
Query: 206 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSK-------------- 251
+ ++Q+ DA+ ME + R L D ++ R ++ +S+
Sbjct: 646 LERQLQESVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQ 705
Query: 252 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 311
+Q+ +DA+ + D + E + L T + + + + + ++Q+ +DA+ ++D +
Sbjct: 706 LQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEH 765
Query: 312 CIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM 371
E + L T + + + + + ++Q+ +DA+ ++D + E + L T + + +
Sbjct: 766 SREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDAV 825
Query: 372 NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 431
+ ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+ ++
Sbjct: 826 VTLSRQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALK 885
Query: 432 DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 491
D + E + L T + + + + ++Q+ +DA+ + D + E + L T
Sbjct: 886 DRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEHSREKSALESRTS 945
Query: 492 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEED 551
+ + + + + + Q+ +DA+ ++D + E + L T + + + + ++Q+ +D
Sbjct: 946 ESVDALAAMERQPQERDDALAALKDRLEEYSREKSALESRTSESVDAVVTLRRQLQERDD 1005
Query: 552 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 611
A+ ++D + E + L T + + + + + ++Q+ +DA+ + D + E +
Sbjct: 1006 ALAALKDRLEEYSREKSALESRTSESVDALAAMERQLQERDDALAALNDRLEEYSREKSA 1065
Query: 612 LSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSK 671
L T + + + + + ++Q+ +DA+ ++D + E + L T + + + + + +
Sbjct: 1066 LESRTSESVDALAAMERRLQERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQ 1125
Query: 672 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 731
+Q+ +DA+ + D + E + L T + + + + ++Q+ +DA+ ++D +
Sbjct: 1126 LQERDDALAALNDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEH 1185
Query: 732 CIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM 791
E + L T + + + + + ++Q+ +DA+ + D + E + L T + + +
Sbjct: 1186 SREKSALESRTSESVDALAAMERQLQERDDALAALNDRLEEHSREKSALESRTSESVDAL 1245
Query: 792 NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 851
+ + + Q+ +DA+ + D + E + L T + + + + ++Q+ +DA+ ++
Sbjct: 1246 AAMERQPQERDDALAALNDRLEEYSREKSALESRTSESVDAVVTLRRQLQERDDALAALK 1305
Query: 852 DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 911
D + E + L T + + + + ++Q+ +DA+ ++D + E + L T
Sbjct: 1306 DRLEEHSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTS 1365
Query: 912 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEED 971
+ + + + + ++Q+ +DA+ + D + E + L T + + + + ++Q+ +D
Sbjct: 1366 ESVGALAAMERQLQERDDALAALNDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDD 1425
Query: 972 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1031
A+ ++D + E + L T + + + + + ++Q+ +DA+ ++D + E +
Sbjct: 1426 ALAALKDRLEEYGREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSA 1485
Query: 1032 LSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSK 1091
L T + + + + + ++Q+ +DA+ + D + E + L T + + + + + +
Sbjct: 1486 LESRTSESVDALAAMERQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQ 1545
Query: 1092 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1151
+Q+ +DA+ ++D + E + L T + + + + ++Q+ +DA+ ++D +
Sbjct: 1546 LQERDDALAALKDRLEEYSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEY 1605
Query: 1152 CIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM 1211
E + L T + + + + + ++Q+ +DA+ + D + E + L T + + +
Sbjct: 1606 SREKSALESRTSESVGALAAMERQLQERDDALAALNDRLEEYDREKSALESRTSESVDAV 1665
Query: 1212 NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 1271
+ ++Q+ +DA+ + D + E + L T + + + + ++Q+ +DA+ ++
Sbjct: 1666 VTLRRQLQERDDALAALNDRLEEYGREKSALESRTSGSVDALAAMERQLQERDDALAALK 1725
Query: 1272 DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 1331
D + E + L T + + + + ++Q+ +DA+ + D + E + L T
Sbjct: 1726 DRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEYGREKSALESRTS 1785
Query: 1332 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEED 1391
+ + + + + ++Q+ +DA+ ++D + E ++L T + + + + + ++Q+ +D
Sbjct: 1786 ESVDALAAMERQLQERDDALAALKDRLEEHSREKSVLESRTSESVDALAAMERQLQERDD 1845
Query: 1392 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1451
A+ ++D + E + L T + + + + ++Q+ +DA+ ++D + E +
Sbjct: 1846 ALAALKDRLEEHSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYGREKSA 1905
Query: 1452 LSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH 1511
L T + + + + ++Q+ +DA+ ++D + E + L T + ++A+ +
Sbjct: 1906 LESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVDALAAMERQ 1965
Query: 1512 LPQTD 1516
L + D
Sbjct: 1966 LQERD 1970
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 252/1497 (16%), Positives = 704/1497 (47%), Gaps = 48/1497 (3%)
Query: 16 LNCIFNDDNAEKLVLRIRIMNSDDS------KMQDEEDAVDKMEDDMFLRCIEANMLSDM 69
LN + + EK L R S D+ ++Q+ +DA+ ++D + E + L
Sbjct: 716 LNDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSALESR 775
Query: 70 TLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDE 129
T + + + + + ++Q+ +DA+ ++D + E + L T + + + + ++Q+
Sbjct: 776 TSESVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLSRQLQER 835
Query: 130 EDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 189
+DA+ ++D + E + L T + + + + + ++Q+ +DA+ ++D + E
Sbjct: 836 DDALAALKDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEYGREK 895
Query: 190 NMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 249
+ L T + + + + ++Q+ +DA+ + D + E + L T + + + + +
Sbjct: 896 SALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAME 955
Query: 250 SKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMF 309
+ Q+ +DA+ ++D + E + L T + + + + ++Q+ +DA+ ++D +
Sbjct: 956 RQPQERDDALAALKDRLEEYSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLE 1015
Query: 310 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 369
E + L T + + + + + ++Q+ +DA+ + D + E + L T + +
Sbjct: 1016 EYSREKSALESRTSESVDALAAMERQLQERDDALAALNDRLEEYSREKSALESRTSESVD 1075
Query: 370 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDK 429
+ + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+
Sbjct: 1076 ALAAMERRLQERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQLQERDDALAA 1135
Query: 430 MEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 489
+ D + E + L T + + + + ++Q+ +DA+ ++D + E + L
Sbjct: 1136 LNDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEHSREKSALESR 1195
Query: 490 TLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDE 549
T + + + + + ++Q+ +DA+ + D + E + L T + + + + + + Q+
Sbjct: 1196 TSESVDALAAMERQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQPQER 1255
Query: 550 EDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 609
+DA+ L+D ++ R ++ +S+ + DAV
Sbjct: 1256 DDAL--------------AALNDRLEEYSREKSALESRTSESVDAV-------------- 1287
Query: 610 NMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 669
+TL+ ++Q+ +DA+ ++D + E + L T + + + +
Sbjct: 1288 -----VTLR---------RQLQERDDALAALKDRLEEHSREKSALESRTSESVDAVVTLR 1333
Query: 670 SKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMF 729
++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+ + D +
Sbjct: 1334 RQLQERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQLQERDDALAALNDRLE 1393
Query: 730 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 789
E + L T + + + + ++Q+ +DA+ ++D + E + L T + +
Sbjct: 1394 EYGREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYGREKSALESRTSESVD 1453
Query: 790 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDK 849
+ + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+
Sbjct: 1454 ALAAMERQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAA 1513
Query: 850 MEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 909
+ D + E + L T + + + + + ++Q+ +DA+ ++D + E + L
Sbjct: 1514 LNDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEYSREKSALESR 1573
Query: 910 TLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDE 969
T + + + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+
Sbjct: 1574 TSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQLQER 1633
Query: 970 EDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 1029
+DA+ + D + E + L T + + + + ++Q+ +DA+ + D + E
Sbjct: 1634 DDALAALNDRLEEYDREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEYGREK 1693
Query: 1030 NMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 1089
+ L T + + + + ++Q+ +DA+ ++D + E + L T + + + +
Sbjct: 1694 SALESRTSGSVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLR 1753
Query: 1090 SKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMF 1149
++Q+ +DA+ + D + E + L T + + + + + ++Q+ +DA+ ++D +
Sbjct: 1754 RQLQERDDALAALNDRLEEYGREKSALESRTSESVDALAAMERQLQERDDALAALKDRLE 1813
Query: 1150 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1209
E ++L T + + + + + ++Q+ +DA+ ++D + E + L T + +
Sbjct: 1814 EHSREKSVLESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSALESRTSESVD 1873
Query: 1210 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDK 1269
+ + ++Q+ +DA+ ++D + E + L T + + + + ++Q+ +DA+
Sbjct: 1874 AVVTLRRQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAA 1933
Query: 1270 MEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 1329
++D + E + L T + + + + + ++Q+ +DA+ ++D + E + L
Sbjct: 1934 LKDRLEEYSREKSALESRTSESVDALAAMERQLQERDDALAALKDKLEEYGREKSALESR 1993
Query: 1330 TLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDE 1389
T + + + + ++Q+ +DA+ + D + E + L T + + + + + ++Q+
Sbjct: 1994 TSESVDAVVTLRRQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQLQER 2053
Query: 1390 EDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 1449
+DA+ + D + E + L T + + + + ++Q+ +DA+ + D + E
Sbjct: 2054 DDALAALNDKLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEHSREK 2113
Query: 1450 NMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIG 1506
+ L T + + + + + ++Q+ +DA+ ++D + E + L T + ++A+
Sbjct: 2114 SALESRTSESVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDALA 2170
Score = 127 bits (319), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 246/1473 (16%), Positives = 691/1473 (46%), Gaps = 41/1473 (2%)
Query: 20 FNDDNAEKLVLRIRIMNSDDS------KMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 73
+ + EK L R S D+ ++Q+ +DA+ ++D + E + L T +
Sbjct: 762 LEEHSREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEYGREKSALESRTSES 821
Query: 74 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAV 133
+ + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+
Sbjct: 822 VDAVVTLSRQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMERQLQERDDAL 881
Query: 134 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 193
++D + E + L T + + + + ++Q+ +DA+ + D + E + L
Sbjct: 882 AALKDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEHSREKSALE 941
Query: 194 DMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQ 253
T + + + + + + Q+ +DA+ ++D + E + L T + + + + ++Q
Sbjct: 942 SRTSESVDALAAMERQPQERDDALAALKDRLEEYSREKSALESRTSESVDAVVTLRRQLQ 1001
Query: 254 DEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI 313
+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+ + D +
Sbjct: 1002 ERDDALAALKDRLEEYSREKSALESRTSESVDALAAMERQLQERDDALAALNDRLEEYSR 1061
Query: 314 EANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNS 373
E + L T + + + + + ++Q+ +DA+ ++D + E + L T + + + +
Sbjct: 1062 EKSALESRTSESVDALAAMERRLQERDDALAALKDRLEEYSREKSALESRTSESVGALAA 1121
Query: 374 DDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDD 433
+ ++Q+ +DA+ + D + E + L T + + + + ++Q+ +DA+ ++D
Sbjct: 1122 MERQLQERDDALAALNDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALKDR 1181
Query: 434 MFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQF 493
+ E + L T + + + + + ++Q+ +DA+ + D + E + L T +
Sbjct: 1182 LEEHSREKSALESRTSESVDALAAMERQLQERDDALAALNDRLEEHSREKSALESRTSES 1241
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAV 553
+ + + + + Q+ +DA+ L+D ++ R ++ +S+ + DAV
Sbjct: 1242 VDALAAMERQPQERDDAL--------------AALNDRLEEYSREKSALESRTSESVDAV 1287
Query: 554 --------------DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 599
++D + E + L T + + + + ++Q+ +DA+ ++
Sbjct: 1288 VTLRRQLQERDDALAALKDRLEEHSREKSALESRTSESVDAVVTLRRQLQERDDALAALK 1347
Query: 600 DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 659
D + E + L T + + + + + ++Q+ +DA+ + D + E + L T
Sbjct: 1348 DRLEEYSREKSALESRTSESVGALAAMERQLQERDDALAALNDRLEEYGREKSALESRTS 1407
Query: 660 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEED 719
+ + + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +D
Sbjct: 1408 ESVDAVVTLRRQLQERDDALAALKDRLEEYGREKSALESRTSESVDALAAMERQLQERDD 1467
Query: 720 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 779
A+ ++D + E + L T + + + + + ++Q+ +DA+ + D + E +
Sbjct: 1468 ALAALKDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALNDRLEEHSREKSA 1527
Query: 780 LSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSK 839
L T + + + + + ++Q+ +DA+ ++D + E + L T + + + + +
Sbjct: 1528 LESRTSESVDALAAMERQLQERDDALAALKDRLEEYSREKSALESRTSESVDAVVTLRRQ 1587
Query: 840 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 899
+Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+ + D +
Sbjct: 1588 LQERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQLQERDDALAALNDRLEEY 1647
Query: 900 CIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM 959
E + L T + + + + ++Q+ +DA+ + D + E + L T + +
Sbjct: 1648 DREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEYGREKSALESRTSGSVDAL 1707
Query: 960 NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 1019
+ + ++Q+ +DA+ ++D + E + L T + + + + ++Q+ +DA+ +
Sbjct: 1708 AAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALN 1767
Query: 1020 DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 1079
D + E + L T + + + + + ++Q+ +DA+ ++D + E ++L T
Sbjct: 1768 DRLEEYGREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSVLESRTS 1827
Query: 1080 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEED 1139
+ + + + + ++Q+ +DA+ ++D + E + L T + + + + ++Q+ +D
Sbjct: 1828 ESVDALAAMERQLQERDDALAALKDRLEEHSREKSALESRTSESVDAVVTLRRQLQERDD 1887
Query: 1140 AVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1199
A+ ++D + E + L T + + + + ++Q+ +DA+ ++D + E +
Sbjct: 1888 ALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSA 1947
Query: 1200 LSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSK 1259
L T + + + + + ++Q+ +DA+ ++D + E + L T + + + + +
Sbjct: 1948 LESRTSESVDALAAMERQLQERDDALAALKDKLEEYGREKSALESRTSESVDAVVTLRRQ 2007
Query: 1260 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1319
+Q+ +DA+ + D + E + L T + + + + + ++Q+ +DA+ + D +
Sbjct: 2008 LQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALNDKLEEY 2067
Query: 1320 CIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM 1379
E + L T + + + + ++Q+ +DA+ + D + E + L T + + +
Sbjct: 2068 GREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEHSREKSALESRTSESVDAL 2127
Query: 1380 NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 1439
+ + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +A + +
Sbjct: 2128 AAMERQLQERDDALAALKDRLEEYGREKSALESRTSESVDALAAMERQLQERGNAFNIFD 2187
Query: 1440 DDMFLRCIEANML-------SDMTLQFIRIMNS 1465
+ C+E + L +DM + F+R +
Sbjct: 2188 GRVNEICMEKSSLGFRLKAGTDMVVVFLRRLRG 2220
Score = 113 bits (283), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 225/1337 (16%), Positives = 624/1337 (46%), Gaps = 55/1337 (4%)
Query: 16 LNCIFNDDNAEKLVLRIRIMNSDDS------KMQDEEDAVDKMEDDMFLRCIEANMLSDM 69
LN + + EK L R S D+ + Q+ +DA+ ++D + E + L
Sbjct: 926 LNDRLEEHSREKSALESRTSESVDALAAMERQPQERDDALAALKDRLEEYSREKSALESR 985
Query: 70 TLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDE 129
T + + + + ++Q+ +DA+ ++D + E + L T + + + + + ++Q+
Sbjct: 986 TSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVDALAAMERQLQER 1045
Query: 130 EDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 189
+DA+ + D + E + L T + + + + + ++Q+ +DA+ ++D + E
Sbjct: 1046 DDALAALNDRLEEYSREKSALESRTSESVDALAAMERRLQERDDALAALKDRLEEYSREK 1105
Query: 190 NMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 249
+ L T + + + + + ++Q+ +DA+ + D + E + L T + + + +
Sbjct: 1106 SALESRTSESVGALAAMERQLQERDDALAALNDRLEEYGREKSALESRTSESVDAVVTLR 1165
Query: 250 SKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMF 309
++Q+ +DA+ ++D + E + L T + + + + + ++Q+ +DA+ + D +
Sbjct: 1166 RQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAALNDRLE 1225
Query: 310 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 369
E + L T + + + + + + Q+ +DA+ L+D ++ R
Sbjct: 1226 EHSREKSALESRTSESVDALAAMERQPQERDDAL--------------AALNDRLEEYSR 1271
Query: 370 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDK 429
++ +S+ + DAV +TL+ ++Q+ +DA+
Sbjct: 1272 EKSALESRTSESVDAV-------------------VTLR---------RQLQERDDALAA 1303
Query: 430 MEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 489
++D + E + L T + + + + ++Q+ +DA+ ++D + E + L
Sbjct: 1304 LKDRLEEHSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESR 1363
Query: 490 TLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDE 549
T + + + + + ++Q+ +DA+ + D + E + L T + + + + ++Q+
Sbjct: 1364 TSESVGALAAMERQLQERDDALAALNDRLEEYGREKSALESRTSESVDAVVTLRRQLQER 1423
Query: 550 EDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 609
+DA+ ++D + E + L T + + + + + ++Q+ +DA+ ++D + E
Sbjct: 1424 DDALAALKDRLEEYGREKSALESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREK 1483
Query: 610 NMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 669
+ L T + + + + + ++Q+ +DA+ + D + E + L T + + + + +
Sbjct: 1484 SALESRTSESVDALAAMERQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAME 1543
Query: 670 SKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMF 729
++Q+ +DA+ ++D + E + L T + + + + ++Q+ +DA+ ++D +
Sbjct: 1544 RQLQERDDALAALKDRLEEYSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLE 1603
Query: 730 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 789
E + L T + + + + + ++Q+ +DA+ + D + E + L T + +
Sbjct: 1604 EYSREKSALESRTSESVGALAAMERQLQERDDALAALNDRLEEYDREKSALESRTSESVD 1663
Query: 790 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDK 849
+ + ++Q+ +DA+ + D + E + L T + + + + ++Q+ +DA+
Sbjct: 1664 AVVTLRRQLQERDDALAALNDRLEEYGREKSALESRTSGSVDALAAMERQLQERDDALAA 1723
Query: 850 MEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 909
++D + E + L T + + + + ++Q+ +DA+ + D + E + L
Sbjct: 1724 LKDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEYGREKSALESR 1783
Query: 910 TLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDE 969
T + + + + + ++Q+ +DA+ ++D + E ++L T + + + + + ++Q+
Sbjct: 1784 TSESVDALAAMERQLQERDDALAALKDRLEEHSREKSVLESRTSESVDALAAMERQLQER 1843
Query: 970 EDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 1029
+DA+ ++D + E + L T + + + + ++Q+ +DA+ ++D + E
Sbjct: 1844 DDALAALKDRLEEHSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYGREK 1903
Query: 1030 NMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDD 1089
+ L T + + + + ++Q+ +DA+ ++D + E + L T + + + + +
Sbjct: 1904 SALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVDALAAME 1963
Query: 1090 SKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMF 1149
++Q+ +DA+ ++D + E + L T + + + + ++Q+ +DA+ + D +
Sbjct: 1964 RQLQERDDALAALKDKLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLE 2023
Query: 1150 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR 1209
E + L T + + + + + ++Q+ +DA+ + D + E + L T + +
Sbjct: 2024 EHSREKSALESRTSESVDALAAMERQLQERDDALAALNDKLEEYGREKSALESRTSESVD 2083
Query: 1210 IMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDK 1269
+ + ++Q+ +DA+ + D + E + L T + + + + + ++Q+ +DA+
Sbjct: 2084 AVVTLRRQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAA 2143
Query: 1270 MEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANML--- 1326
++D + E + L T + + + + + ++Q+ +A + + + C+E + L
Sbjct: 2144 LKDRLEEYGREKSALESRTSESVDALAAMERQLQERGNAFNIFDGRVNEICMEKSSLGFR 2203
Query: 1327 ----SDMTLQFIRIMNS 1339
+DM + F+R +
Sbjct: 2204 LKAGTDMVVVFLRRLRG 2220
>gi|340501189|gb|EGR27999.1| RNA polymerase ii subunit, putative [Ichthyophthirius multifiliis]
Length = 1103
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 149/273 (54%), Gaps = 29/273 (10%)
Query: 1494 LSDMTLQGIEAIGKVYM----HLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLS 1549
+ ++ + GI+ + K+Y + + D+K +T+ + + +T GT+L K++
Sbjct: 734 IREIYIGGIQGVDKIYPAEKDFVGKWDTKTGKKVTDK-------ETIFKTSGTNLKKIIK 786
Query: 1550 ERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1609
VD RT+SNDI EI +V+GIEA RKS+ E+ V++ Y +Y+NYRHL++L D MT +
Sbjct: 787 IDGVDSQRTYSNDIQEIAKVIGIEAARKSIINEIREVIEPYDIYINYRHLSILADWMTLR 846
Query: 1610 GHLMAITRHGINR-QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMG 1668
G + I R+GINR L + SFEETV++L AA E D + GV+ENII GQ +G
Sbjct: 847 GRITPINRNGINRIPGISCLRKSSFEETVEILNSAAIFFEKDKLTGVTENIIFGQNCDIG 906
Query: 1669 TGCFDLLLDAEKCKDGI--------EIPLATGMMGGPAGMFFGSAA---TPSSMIHNPLQ 1717
TG F+LL+D K +D IP + M A +F + TP + P
Sbjct: 907 TGSFELLIDQMKVQDFKTKREADYDNIPEQSPM--SEAADYFNTPVNPNTPGVGMMTPGF 964
Query: 1718 TPHNTSLTNATHQSRDKAFAPSELFLSPDSRYP 1750
+ HN + N T + ++ F+P F++ YP
Sbjct: 965 SVHNI-MGNFTPSTPNQGFSP---FITSTPNYP 993
>gi|161897753|gb|ABX80022.1| RNA polymerase 2 largest subunit [Cephaloboides cf. armata SB363]
Length = 89
Score = 148 bits (373), Expect = 3e-32, Method: Composition-based stats.
Identities = 71/89 (79%), Positives = 82/89 (92%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
DGT+L+KVLSE+ +DP+RT SNDICEIF+VLGIEAVRK++E+EMN V+ F G YVNYRHL
Sbjct: 1 DGTALLKVLSEQHIDPIRTTSNDICEIFEVLGIEAVRKAIEREMNNVISFDGSYVNYRHL 60
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGAL 1628
ALLCDVMTAKGHLMAITRHGINRQ+ GAL
Sbjct: 61 ALLCDVMTAKGHLMAITRHGINRQEVGAL 89
>gi|429964462|gb|ELA46460.1| hypothetical protein VCUG_02055 [Vavraia culicis 'floridensis']
Length = 1583
Score = 147 bits (372), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 154/290 (53%), Gaps = 40/290 (13%)
Query: 1496 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD------WLLETDGTSLMKVLS 1549
+ + G++ I +VY+ L + + T+ G + AD W L+T GT+L+++L
Sbjct: 1233 GVRIGGVKGISRVYL-LEEEGTDGNEAGTDGGT-GSTADANNNKKWKLQTSGTNLIEILH 1290
Query: 1550 ERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1609
+ ++SND+ E+ VLGIEA R + KE+ V++ G YVN RHL LL D+MT+
Sbjct: 1291 NEYI--TDSYSNDLMEVCAVLGIEAARNVLIKEIKKVIESDGSYVNQRHLMLLGDIMTST 1348
Query: 1610 GHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGT 1669
G L+ ITRHG N++ + LMRC+FEETV++L++AAA +E MR +SE+++ GQ+ +GT
Sbjct: 1349 GVLLGITRHGFNKKGSSCLMRCTFEETVEILLNAAAGSEHTNMRTISESVMSGQIAALGT 1408
Query: 1670 GCFDLLLDAEKCKDG---IEIPLATGMMG---------GPAGMFFGSAATP--------S 1709
G +LLLD D E ++T G G G+ S TP
Sbjct: 1409 GNVELLLDVHALGDKAFEFEHTVSTAHKGVLWSPESGTGTDGVLSPSRYTPRYTPVSPTY 1468
Query: 1710 SMIHNPLQTPHNTSL---------TNATHQSRDKAFAPSELFLSPDS-RY 1749
S + +P+ +P + S NA + ++P+ SPDS RY
Sbjct: 1469 SRVTSPVYSPKSPSYMPTSPKYVPMNAKYALGSSRYSPTSPTYSPDSPRY 1518
>gi|340502584|gb|EGR29261.1| RNA polymerase domain 2 family protein [Ichthyophthirius multifiliis]
Length = 1496
Score = 147 bits (372), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 144/261 (55%), Gaps = 27/261 (10%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD--WLLETDGTSLMKVLSER 1551
L+++ + GI+ I KVY P + +++G K I D + T G++L ++L
Sbjct: 1103 LTNLYISGIKKIDKVY---PTEKENQHNFDSKNG--KQIKDKEIIFITSGSNLKQILKIP 1157
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
++P T++N++ EI + LGIEA R+S+ E+ V++ Y LY+NYRHL++L D MT +G
Sbjct: 1158 GINPFLTYTNNLQEISESLGIEAARRSIINELREVIEPYDLYINYRHLSILADWMTLRGR 1217
Query: 1612 LMAITRHGINR-QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I R GIN+ + L + SFEETVD+L +AA + D + G++ENII GQ +GTG
Sbjct: 1218 ITPINRMGINKIVNLSCLRKASFEETVDILNNAAIFCQKDKLAGITENIIFGQYCDLGTG 1277
Query: 1671 CFDLLLDAEKC------KDGIEIPLATGMMGGPAGMFFGSAATPSSMIHNPLQ--TPHNT 1722
CFDLL+D +K +D P P +A TP ++ P+ TP N
Sbjct: 1278 CFDLLIDQQKVVDFKTKRDINYFPFYEDENHSP------NAKTPIQYLNTPVYPFTPGNA 1331
Query: 1723 SLTNA----THQSRDKAFAPS 1739
LT HQ+ +F PS
Sbjct: 1332 VLTPGYAFSVHQNMG-SFTPS 1351
>gi|295873244|gb|ADG48704.1| CG1554 [Drosophila teissieri]
gi|295873246|gb|ADG48705.1| CG1554 [Drosophila teissieri]
gi|295873248|gb|ADG48706.1| CG1554 [Drosophila teissieri]
gi|295873250|gb|ADG48707.1| CG1554 [Drosophila teissieri]
gi|295873252|gb|ADG48708.1| CG1554 [Drosophila teissieri]
gi|295873254|gb|ADG48709.1| CG1554 [Drosophila teissieri]
gi|295873256|gb|ADG48710.1| CG1554 [Drosophila teissieri]
gi|295873258|gb|ADG48711.1| CG1554 [Drosophila teissieri]
gi|295873260|gb|ADG48712.1| CG1554 [Drosophila teissieri]
gi|295873262|gb|ADG48713.1| CG1554 [Drosophila teissieri]
gi|295873264|gb|ADG48714.1| CG1554 [Drosophila teissieri]
gi|295873266|gb|ADG48715.1| CG1554 [Drosophila teissieri]
gi|295873268|gb|ADG48716.1| CG1554 [Drosophila teissieri]
gi|295873270|gb|ADG48717.1| CG1554 [Drosophila teissieri]
Length = 306
Score = 146 bits (369), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 74/76 (97%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 290
Query: 1520 RIIITESGEFKAIADW 1535
RI+ITE+GEFKAI +W
Sbjct: 291 RIVITETGEFKAIGEW 306
Score = 129 bits (325), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 200 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 259
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 260 IEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
Score = 74.3 bits (181), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 231 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 273
>gi|3511287|gb|AAC62246.1| DNA-dependent RNA polymerase II largest subunit, partial [Breviata
anathema]
Length = 1690
Score = 146 bits (369), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 126/209 (60%), Gaps = 13/209 (6%)
Query: 1472 DEEDAVD--KMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF 1529
+ E AVD + EDD LR +E ++ + + GI + KV + DS+ + E G
Sbjct: 1199 EAEAAVDEDRGEDDR-LRDME-EIIMGLHVHGIRGMTKVMV----DDSRTEKWVDERGAL 1252
Query: 1530 KAIADWLLETD-----GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
+ W L+ + L+ V+ VDP RT +N I I VLG+EA R ++ KE+
Sbjct: 1253 QTRRFWPLDGEVKKDTAPPLLDVMVHPAVDPYRTTTNSITVINDVLGVEAARAALLKELR 1312
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
VL F G Y+N RHL +L DVMT +G+LM+ITR G+NR D G LMR SFEETVDVL DAA
Sbjct: 1313 DVLGFDGSYINIRHLLMLVDVMTFRGYLMSITRFGMNRTDNGILMRASFEETVDVLQDAA 1372
Query: 1645 AHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
A D +RGVS+NI++GQ+ +GTG FD
Sbjct: 1373 QFAGHDELRGVSDNIMLGQVAPVGTGTFD 1401
>gi|1143740|gb|AAB50025.1| RNA polymerase II [Trichomonas vaginalis]
Length = 1661
Score = 145 bits (365), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 185/369 (50%), Gaps = 49/369 (13%)
Query: 1418 IRIMNSDDSKMQDEEDAVDKME---DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEE 1474
IR +D ++QD V + E ++M IE+ +SD+ +Q I+ M D + ++
Sbjct: 1194 IRYGGVEDRELQDLAPWVLRFEINREEMIASNIES--ISDI-VQKIKGMYGDKFFVIGDD 1250
Query: 1475 DA-VDKME------------DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRI 1521
DA + +M+ D FLR E M TL+GI I +V ++ + ++K
Sbjct: 1251 DARIIRMQARLKDEQAEFAMDVKFLRETEQQMYKSFTLKGIPGISRVKIN---SAAEKMF 1307
Query: 1522 IITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEK 1581
+ E+ F L T+GT+ ++LS VD V T +NDI ++ VLGIEA R S+
Sbjct: 1308 LNPETHGFDKEKVSCLYTEGTAFREILSLDHVDTVHTITNDIYQVCDVLGIEAARHSLSY 1367
Query: 1582 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1641
EM +++ G +N RHL LL D MT G L ++RHGIN+ TG LMR S+E T DV
Sbjct: 1368 EMMLIMEKAGAALNRRHLDLLADTMTQYGVLYPVSRHGINKTPTGTLMRASYEMTNDVFF 1427
Query: 1642 DAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMF 1701
DAA +E D MR VS NII G+ R GTG ++L++ + +P+ G GG +
Sbjct: 1428 DAAVFSEIDYMRDVSSNIIAGKPSRAGTGIVEVLINEDL------LPMTKGNNGGEDLI- 1480
Query: 1702 FGSAATPSSMIH----------NPLQTPHNTSLTNATHQSRDKAFAPSE-----LFLSP- 1745
ATPS MI N + +P LTN QS +P E LSP
Sbjct: 1481 --GPATPSMMISPVPQGYVSQDNIVTSPFQDMLTNDIVQSPMSPVSPIESPLNGGALSPM 1538
Query: 1746 --DSRYPYI 1752
D++ PY+
Sbjct: 1539 LMDAQSPYL 1547
>gi|330038381|ref|XP_003239581.1| DNA-directed RNA polymerase II largest chain [Cryptomonas paramecium]
gi|327206505|gb|AEA38683.1| DNA-directed RNA polymerase II largest chain [Cryptomonas paramecium]
Length = 1452
Score = 145 bits (365), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 98/145 (67%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
++++L+T+G L VL+ VDP RT SNDI E F+ GIEA RK + KE+ ++ F G
Sbjct: 1306 SEFILDTEGIDLKYVLNCNIVDPTRTVSNDILETFKTFGIEAARKILIKEIKNLISFDGS 1365
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
YVN+RH+ LL D+MT G LM+ITRHGI++ + G + + SFEETVD+ +A D +
Sbjct: 1366 YVNFRHIFLLADIMTHGGKLMSITRHGISKIEIGPIAKSSFEETVDIFYQSAVFGIYDNI 1425
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLD 1677
+GVS NI++G L +GTG DL +D
Sbjct: 1426 KGVSANIMVGNLLSVGTGKVDLFVD 1450
>gi|154414043|ref|XP_001580050.1| RNA polymerase II [Trichomonas vaginalis G3]
gi|121914263|gb|EAY19064.1| RNA polymerase II [Trichomonas vaginalis G3]
Length = 1661
Score = 144 bits (364), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 164/311 (52%), Gaps = 31/311 (9%)
Query: 1418 IRIMNSDDSKMQDEEDAVDKME---DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEE 1474
IR +D ++QD V + E ++M IE+ +SD+ +Q I+ M D + ++
Sbjct: 1194 IRYGGVEDRELQDLAPWVLRFEINREEMIASNIES--ISDI-VQKIKGMYGDKFFVIGDD 1250
Query: 1475 DA-VDKME------------DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRI 1521
DA + +M+ D FLR E M TL+GI I +V ++ + ++K
Sbjct: 1251 DARIIRMQARLKDEQAEFAMDVKFLRETEQQMYKSFTLKGIPGISRVKIN---SAAEKMF 1307
Query: 1522 IITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEK 1581
+ E+ F L T+GT+ ++LS VD V T +NDI ++ VLGIEA R S+
Sbjct: 1308 LNPETHGFDKEKVSCLYTEGTAFREILSLDHVDTVHTITNDIYQVCDVLGIEAARHSLSY 1367
Query: 1582 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1641
EM +++ G +N RHL LL D MT G L ++RHGIN+ TG LMR S+E T DV
Sbjct: 1368 EMMLIMENAGAALNRRHLDLLADTMTQYGVLYPVSRHGINKTPTGTLMRASYEMTNDVFF 1427
Query: 1642 DAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAGMF 1701
DAA +E D MR VS NII G+ R GTG ++L++ + +P+ G GG +
Sbjct: 1428 DAAVFSEIDYMRDVSSNIIAGKPSRAGTGIVEVLINEDL------LPMTKGNNGGEDLI- 1480
Query: 1702 FGSAATPSSMI 1712
ATPS MI
Sbjct: 1481 --GPATPSMMI 1489
>gi|327242113|gb|AEA40835.1| RNA polymerase II largest subunit [Pentatrichomonas hominis]
Length = 1721
Score = 143 bits (360), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 147/283 (51%), Gaps = 26/283 (9%)
Query: 1436 DKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1495
+ ++F+ E NM ++ F ++ +K +++ E + FLR IE +
Sbjct: 1262 NSYSSELFVSIFEGNM-ANAASSFPPVIRIRPTKSLVQKNGKTD-ESEFFLREIEQQLYD 1319
Query: 1496 D--MTLQGIEAIGKVYMHLPQTDSK-KRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
+ ++++GI I +V + D K KR ++ E + +D L T+GT+L +L
Sbjct: 1320 ERAISIKGIPGIRRV-----KIDQKAKRKVLEEDHHWVEKSDPQLITEGTALKAILGLDH 1374
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
+D T++NDI EI+ VLGIEA R S+ EM ++ G +N RHL LL D MT G L
Sbjct: 1375 IDKKLTYTNDINEIYDVLGIEAARNSLCNEMMMIMDNAGASLNRRHLDLLADTMTQYGRL 1434
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG-- 1670
++RHGINR TG L R S+E+T+DV DA + AE DPM VS NII+G+ GTG
Sbjct: 1435 YPVSRHGINRTGTGTLARASYEQTIDVFFDACSFAETDPMEDVSSNIIVGKPSHAGTGIV 1494
Query: 1671 -CF---DLLL---------DAEKCKDGIEIPLATGMMGGPAGM 1700
CF LL D E G+ P+ T M GP M
Sbjct: 1495 ECFINPKLLPTRQGTIIQNDEEGKLQGVATPVQT-MSPGPENM 1536
>gi|440494147|gb|ELQ76552.1| RNA polymerase II, large subunit, partial [Trachipleistophora
hominis]
Length = 1748
Score = 142 bits (357), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 132/253 (52%), Gaps = 50/253 (19%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+L+T GT+L+++L + +SND+ E+ VLGIEA R + KE+ V++ G YV
Sbjct: 1447 WMLQTSGTNLLEILHNEYI--TDCYSNDLTEVCAVLGIEAARNVLIKEIKKVIESDGSYV 1504
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
N RHL LL D+MT+ G L+ ITRHG N++ + LMRC+FEETV++L++AAA +E MR
Sbjct: 1505 NQRHLMLLGDIMTSTGVLLGITRHGFNKKGSSCLMRCTFEETVEILLNAAAGSEHTNMRT 1564
Query: 1655 VSENIIMGQLPRMGTGCFDLLLD----AEK--------------------CKDGIEIPLA 1690
+SE+++ GQ+ +GTG +LLLD EK C DG+ P A
Sbjct: 1565 ISESVMSGQIASLGTGNVELLLDVHALGEKAFEFEHAPRQNVLWSPESGTCTDGVLSPAA 1624
Query: 1691 TGMMGGPAGMFFGSAATPSSMIHNPL-----------QTPHNTSLT--NATHQSRDKAFA 1737
+ TP+S ++ + TP + NA + ++
Sbjct: 1625 R----------YSPRYTPASPTYSRISSPSYSPTSPAYTPTSPKYVPMNAKYVLGSSRYS 1674
Query: 1738 PSELFLSPDS-RY 1749
P+ SP S RY
Sbjct: 1675 PTSPSYSPASPRY 1687
>gi|322511128|gb|ADX06441.1| putative DNA-dependent RNA polymerase II [Organic Lake phycodnavirus
2]
Length = 1478
Score = 140 bits (354), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 120/208 (57%), Gaps = 21/208 (10%)
Query: 1479 KMEDD--MFLRCIEANMLSDMTLQGIEAIGKV-------YMHLPQTDSKKRIIITESGEF 1529
K EDD ++ + +L+ + L+GI I KV YM+ + K I
Sbjct: 1223 KGEDDNIYLVKSFQEKLLNQIVLRGINKIQKVNLREINKYMNYDGSLYTKNKI------- 1275
Query: 1530 KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQF 1589
++L+T G++L +VL+ +D RT+SN+I E+ +VLGIEA RK + E+ V++F
Sbjct: 1276 -----YVLDTVGSNLAEVLTLDFIDYKRTYSNNISEMLEVLGIEAARKCLFNEIKEVMEF 1330
Query: 1590 YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEA 1649
G Y+N+ H++LLCD MT +++I RHGIN D G + + SFEET ++ + AA H E
Sbjct: 1331 GGTYINHHHISLLCDRMTTNHKMVSIFRHGINNDDIGPIAKASFEETTEMFLRAAKHGEL 1390
Query: 1650 DPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
D MRGVS N++ GQ GT F + L+
Sbjct: 1391 DQMRGVSANVMCGQDGYYGTSSFSVYLN 1418
>gi|357289799|gb|AET73112.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 12T]
gi|357292599|gb|AET73935.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 14T]
Length = 1512
Score = 140 bits (352), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 126/214 (58%), Gaps = 9/214 (4%)
Query: 1469 KMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1528
K + +D+ ++ L+ ++ +L + L+GI+ I KV + TD+ + I +
Sbjct: 1241 KASSTPETLDQSDEIYILKNLQDELLDTLILRGIKNIDKVLLR-KITDNFEEI------D 1293
Query: 1529 FKAIAD--WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTV 1586
K I W+L+T GT+L+ +L+ +D +T++ DI EI+ VLG+EA R+++ E +
Sbjct: 1294 LKYIKKEVWVLDTVGTNLIDILALEFIDKTKTYTTDIMEIYNVLGVEAGRQAIFNEFSEA 1353
Query: 1587 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1646
++F G Y+NY HL +L D M +++I RHGIN D G + + SFEET ++ + AA H
Sbjct: 1354 IEFDGAYINYHHLTMLADRMCCNDKMVSIFRHGINNDDVGPIAKASFEETPEMFLKAARH 1413
Query: 1647 AEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
E D MRGVS NI+ GQ GT F LL+D +K
Sbjct: 1414 GELDAMRGVSANIMCGQEGYYGTSSFKLLVDMDK 1447
>gi|322510715|gb|ADX06029.1| putative DNA-directed RNA polymerase II [Organic Lake phycodnavirus
1]
Length = 1464
Score = 140 bits (352), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 128/219 (58%), Gaps = 13/219 (5%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
I+IM + ++ +DE D + ++ + +L+ + L+GI I KV ++ + ++
Sbjct: 1201 IKIMKTLNNVYKDETDNI------YLIKSFQEKILNHIVLRGINNIKKV--NIREINN-- 1250
Query: 1520 RIIITESGE-FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
I GE + ++L+T GT+L +VL+ +D RTFSN+I E+ LGIEA RK
Sbjct: 1251 --YINYDGEQYTKNKIYVLDTIGTNLAEVLTLPFLDYKRTFSNNIIEMRDTLGIEAARKC 1308
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ E+ V++F G Y+N+ H+ LLCD MT +++I RHGIN D G + + SFEET +
Sbjct: 1309 LFNEIQEVMEFGGSYINHHHIYLLCDRMTTNYEMVSIFRHGINNDDIGPIAKASFEETTE 1368
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
+ + AA H E D MRGVS N++ GQ GT F + L+
Sbjct: 1369 MFLRAARHGELDEMRGVSANVMCGQDGYYGTSSFSVYLN 1407
>gi|162606578|ref|XP_001713319.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
gi|12580785|emb|CAC27103.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
Length = 1473
Score = 139 bits (350), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 102/153 (66%)
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
+SG+ K +++LET+G L V++ +D R +ND+ E +VLGIEA RK + +E+
Sbjct: 1320 QSGKLKNNFEFVLETEGVDLRFVMNYNGIDYSRCTTNDLLESLKVLGIEATRKILIQELR 1379
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
++ F G YVNYRHL L D++T +G LM+I RHGIN+ ++G + + +FEETVD+ ++A
Sbjct: 1380 NLISFDGSYVNYRHLCTLVDLITFRGSLMSINRHGINKCNSGPIAKSTFEETVDIFYESA 1439
Query: 1645 AHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
D +RGVS I+ G +P++GTG DL ++
Sbjct: 1440 VFGLNDNLRGVSAQIMTGMVPKIGTGKIDLFVN 1472
>gi|157841403|gb|ABV83157.1| RNA polymerase 2 [Oscheius insectivora]
Length = 83
Score = 136 bits (343), Expect = 1e-28, Method: Composition-based stats.
Identities = 67/83 (80%), Positives = 76/83 (91%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
DGT+L++VLSE +DPVRT SNDICEIF+VLGIEAVRKS+E+EM+ V+ F G YVNYRHL
Sbjct: 1 DGTALLRVLSEPMIDPVRTTSNDICEIFEVLGIEAVRKSIEREMHNVISFDGSYVNYRHL 60
Query: 1600 ALLCDVMTAKGHLMAITRHGINR 1622
ALLCDVMTAKGHLMAITRHGINR
Sbjct: 61 ALLCDVMTAKGHLMAITRHGINR 83
>gi|440301955|gb|ELP94337.1| DNA-directed RNA polymerase II subunit RPB1, putative [Entamoeba
invadens IP1]
Length = 1650
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 140/259 (54%), Gaps = 15/259 (5%)
Query: 1433 DAVDKMEDDMFLRCI----EANMLSDMTLQ---FIRIMNSDDSKMQDEEDAVDKMEDD-- 1483
D + K D F C+ ++N + D +++ +IR +SD ++ E+ + D
Sbjct: 1221 DNLKKRVSDKFPSCLVIQSDSNHVVDGSVKIVLYIRFPDSDVARCDSIENLTRALSSDRE 1280
Query: 1484 --MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
F + + +L+D+ + G+ I K+ + + +I E+ W++ T+G
Sbjct: 1281 PVAFHKKMIDQILNDVQISGVVGISKIIIR--DKPTPFLVIDPETKLLHEKKQWVIFTEG 1338
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
++++ + +VD +T +N++ E++Q LGIEA R + E L G YVNYRHL L
Sbjct: 1339 SNMVGLTQFEEVDFTKTVTNNVYEVYQFLGIEAGRIQLASEFIKCLS--GSYVNYRHLGL 1396
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
L DVMT G + + R G++R G + R SFE+T++ AAA E+D + GVS+N++M
Sbjct: 1397 LADVMTHTGRVEPVNRMGLSRSHAGVITRASFEQTLEQFRRAAAFGESDMLNGVSQNVLM 1456
Query: 1662 GQLPRMGTGCFDLLLDAEK 1680
GQ +GTG F +L+D EK
Sbjct: 1457 GQRTIVGTGAFTVLIDVEK 1475
>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1657
Score = 134 bits (337), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 131/257 (50%), Gaps = 37/257 (14%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
Q +RI D K QDE++ D E D+ L+ +E+++L +TL+G+ I + ++ +
Sbjct: 1192 QVVRIRQIQDPK-QDEDN--DDTEYDVTLKKLESHLLDTLTLRGVPGIDRAFI-----NE 1243
Query: 1518 KKRIIITESGEFKAIA------DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLG 1571
K R + E G A +W+LET G++L VL+ +D RT+SN EI +V G
Sbjct: 1244 KSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFG 1303
Query: 1572 IEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1631
IEA R+ +E+ + L + T H TGALMRC
Sbjct: 1304 IEATRRPFSEELTQ---------GAASMVLTSPIDTWHSH-------------TGALMRC 1341
Query: 1632 SFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
SFEETV++L+DAAA AE D RGVSEN+I+GQ+ GTG FD LD +
Sbjct: 1342 SFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDFYLDQSMLMGVVSNNAGL 1401
Query: 1692 GMMG-GPAGMFFGSAAT 1707
G MG P GM AAT
Sbjct: 1402 GAMGEEPKGMLSDGAAT 1418
>gi|408381653|ref|ZP_11179201.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium formicicum
DSM 3637]
gi|407815584|gb|EKF86154.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium formicicum
DSM 3637]
Length = 383
Score = 134 bits (337), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 42/293 (14%)
Query: 1394 DKMEDDMFLRCIEANMLSDMTLQ-FIRIMNSDDSKMQ-----DEEDAVDKMED-DMFLRC 1446
D D+ F+R I AN + +TL ++ N + + M DEE +K D D +
Sbjct: 120 DHASDEEFVRTI-ANRIGKITLNDILKDFNVNYASMNMSIEIDEEQVKEKRLDYDEVMGK 178
Query: 1447 IEANMLSDMTLQFIRIMN---SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1503
IE T + + I N S + K+ D + A+ + LR + A+ + D+ + GI+
Sbjct: 179 IEK------TFKSVEINNNLLSFEPKITDPKHAIRE------LRLL-ADKVRDLQISGIK 225
Query: 1504 AIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDI 1563
IGKV +I + G+ +W++ T+G++L VL VD VRT +NDI
Sbjct: 226 NIGKV-------------VIRKEGQ-----EWVIHTEGSNLGAVLKMDGVDRVRTTTNDI 267
Query: 1564 CEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1623
E+ +VLG+EA R S+ E T ++ GL V+ RH+ L+ D+MTA G + +I RHGI+ +
Sbjct: 268 HEVEKVLGVEAARNSIIHEAQTTMEEQGLTVDVRHIMLVADMMTADGIVKSIGRHGISGE 327
Query: 1624 DTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L R SFEET L+ A+ E D + G+ ENII+GQ +GTG +++
Sbjct: 328 KASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTGSVGVIM 380
>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
taurus]
Length = 1323
Score = 134 bits (336), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 99.8 bits (247), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%), Gaps = 2/65 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDS 1517
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KV + HLPQTD+
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVSVTCHLPQTDN 1318
Query: 1518 KKRII 1522
KK+II
Sbjct: 1319 KKKII 1323
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>gi|73671119|ref|YP_307134.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina barkeri str.
Fusaro]
gi|72398281|gb|AAZ72554.1| DNA-directed RNA polymerase, subunit A' [Methanosarcina barkeri str.
Fusaro]
Length = 426
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 110/185 (59%), Gaps = 18/185 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++TL+GIE I KR+++ + GE ++ L T+G++L +VL
Sbjct: 216 AKSIHNVTLKGIEGI-------------KRVVVRKEGE-----EYTLYTEGSALREVLQF 257
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI++VLGIEA R ++ KE L+ GL V+ RH+ L+ D+MT G
Sbjct: 258 DGVDKTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVSDLMTCDG 317
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA + D ++GV+ENII+GQ RMGTG
Sbjct: 318 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGDVDQLQGVTENIIVGQPIRMGTG 377
Query: 1671 CFDLL 1675
L+
Sbjct: 378 DVHLI 382
>gi|167376643|ref|XP_001733237.1| DNA-directed RNA polymerase II subunit RPB1 [Entamoeba dispar SAW760]
gi|165904563|gb|EDR29776.1| DNA-directed RNA polymerase II subunit RPB1, putative [Entamoeba
dispar SAW760]
Length = 1619
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 4/190 (2%)
Query: 1493 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
+L + + GIE I KV +PQ ++ E+ K W++ T+G+++ + +
Sbjct: 1275 LLRTVVISGIEGITKVI--IPQKPKNTIVVDPETKMLKDQLQWVVFTEGSNMAGLAECDN 1332
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VD +T +N++ E F LGIEA R +E E L G YVN+RHLAL+ DVMT G +
Sbjct: 1333 VDFYKTVTNNVYETFLYLGIEAGRTQLEAEFIKTLS--GSYVNFRHLALMADVMTFTGRI 1390
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
R G++R G + R SFE+T++ AAA +E+D + G+S+NI+MGQ GTG F
Sbjct: 1391 QPFNRMGLSRGRAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGTGAF 1450
Query: 1673 DLLLDAEKCK 1682
+LLD + K
Sbjct: 1451 TVLLDIDSLK 1460
>gi|56756072|gb|AAW26214.1| SJCHGC09439 protein [Schistosoma japonicum]
Length = 503
Score = 132 bits (331), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 90/162 (55%), Gaps = 26/162 (16%)
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
MAITRHG+NR DTGAL RCSFEETVD+LM+AA H+E DPM GVSE I++GQL R+GTGCF
Sbjct: 1 MAITRHGLNRLDTGALARCSFEETVDILMEAAIHSEYDPMAGVSETIMLGQLARIGTGCF 60
Query: 1673 DLLLDAEKCKDGIEIPLATGMMG------GPAGMFFGSAATP---------------SSM 1711
DLLLD+ KC++ IPL GM+G P + A+P S
Sbjct: 61 DLLLDSAKCQEAQPIPLG-GMLGMGVLFNAPGFEGLAALASPGLGLTMNADGIPVLGDSG 119
Query: 1712 IHNPLQTPHNTSLTNATHQSRDKAF----APSELFLSPDSRY 1749
H P H+ + + S F AP SP RY
Sbjct: 120 YHTPWDNAHSPVGSVDSSPSYRGVFGGATAPHSAMFSPAMRY 161
>gi|183233415|ref|XP_651781.2| DNA-directed RNA polymerase II large subunit [Entamoeba histolytica
HM-1:IMSS]
gi|48249473|gb|AAT40981.1| RNA polymerase II largest subunit [Entamoeba histolytica]
gi|169801584|gb|EAL46395.2| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449709040|gb|EMD48386.1| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
histolytica KU27]
Length = 1636
Score = 132 bits (331), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
Query: 1493 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
+L + + GIE I KV +PQ ++ E+ + W++ T+G+++ + +
Sbjct: 1295 LLRTVVISGIEGITKVI--IPQKPKNAIVVDPETKMLRDQLQWVVFTEGSNMAGLAECDN 1352
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VD +T +N++ E F LGIEA R +E E+ L G YVN+RHLAL+ DVMT G +
Sbjct: 1353 VDFYKTVTNNVYETFLYLGIEAGRTQLEAELIKTLS--GSYVNFRHLALMADVMTFTGRI 1410
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
R G++R G + R SFE+T++ AAA +E+D + G+S+NI+MGQ GTG F
Sbjct: 1411 QPFNRMGLSRGRAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGTGAF 1470
Query: 1673 DLLLDAEKCK 1682
+LLD + K
Sbjct: 1471 TVLLDIDSLK 1480
>gi|407039913|gb|EKE39890.1| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
nuttalli P19]
Length = 1635
Score = 132 bits (331), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
Query: 1493 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
+L + + GIE I KV +PQ ++ E+ + W++ T+G+++ + +
Sbjct: 1294 LLRTVVISGIEGITKVI--IPQKPKNTIVVDPETKMLRDQLQWVVFTEGSNMAGLAECDN 1351
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VD +T +N++ E F LGIEA R +E E+ L G YVN+RHLAL+ DVMT G +
Sbjct: 1352 VDFYKTVTNNVYETFLYLGIEAGRTQLEAELIKTLS--GSYVNFRHLALMADVMTFTGRI 1409
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
R G++R G + R SFE+T++ AAA +E+D + G+S+NI+MGQ GTG F
Sbjct: 1410 QPFNRMGLSRGRAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGTGAF 1469
Query: 1673 DLLLDAEKCK 1682
+LLD + K
Sbjct: 1470 TVLLDIDSLK 1479
>gi|288561070|ref|YP_003424556.1| DNA-directed RNA polymerase subunit A'' RpoA2 [Methanobrevibacter
ruminantium M1]
gi|288543780|gb|ADC47664.1| DNA-directed RNA polymerase subunit A'' RpoA2 [Methanobrevibacter
ruminantium M1]
Length = 545
Score = 131 bits (329), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 24/213 (11%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ D+ + G + IGKV + K A+W+L T+G++L + +
Sbjct: 302 VRDLQISGTKGIGKVIIR------------------KDDAEWVLHTEGSNLGAIFKIEGI 343
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D VR+ +NDI EI VLGIEA R ++ E+N L GL V+ RH+ L+ D+MT++G +
Sbjct: 344 DKVRSTTNDIHEIEVVLGIEAARNAIVYELNRTLSDQGLTVDIRHIMLVADMMTSEGTVK 403
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
+I RHGI+ + + L R +FEET L+ A+ E D + G+ ENII+GQ +GTG
Sbjct: 404 SIGRHGISGEKSSVLARAAFEETGKHLLHASIRGEVDDLTGIIENIIIGQPIPLGTGSVS 463
Query: 1674 LLLDAEKCKDGIEIPLATGMMGGPAGMFFGSAA 1706
+ + + P+ G+ G GSA+
Sbjct: 464 VTMKPDAY------PITAGITKRGKGKSGGSAS 490
>gi|63145980|gb|AAY33925.1| RNA polymerase II polypeptide A [Ovis aries]
Length = 131
Score = 131 bits (329), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 56 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 115
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 116 IESNMLTDMTLQGI 129
Score = 76.3 bits (186), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 43/44 (97%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIE 1503
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIE 130
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
Score = 70.5 bits (171), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1418 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1460
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 87 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 129
>gi|150401217|ref|YP_001324983.1| DNA-directed RNA polymerase subunit A'' [Methanococcus aeolicus
Nankai-3]
gi|166229257|sp|A6UV49.1|RPOA2_META3 RecName: Full=DNA-directed RNA polymerase subunit A''
gi|150013920|gb|ABR56371.1| DNA-directed RNA polymerase, subunit A'' [Methanococcus aeolicus
Nankai-3]
Length = 397
Score = 130 bits (328), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 3/168 (1%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + R+I+ + + +++L ++G++L V VD VRT SN+I EI V
Sbjct: 215 IHLKGVPNIPRVIVKKD---DTMGEYILHSEGSNLSAVFEIDGVDMVRTTSNNIVEIQDV 271
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ E++ VL GL V+ RHL ++ D+MTA G + +I RHG++ + L
Sbjct: 272 LGIEAARNAIINEISGVLNQQGLNVDIRHLMVIADIMTADGSVKSIGRHGLSGEKASVLA 331
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
R +FEETV L AA +D + GV ENII+G+ MGTGC D+ +D
Sbjct: 332 RAAFEETVKHLYSAAEKGHSDKLSGVVENIIVGKPISMGTGCVDVYID 379
>gi|298709808|emb|CBJ31607.1| RNA polymerase III, largest subunit [Ectocarpus siliculosus]
Length = 1518
Score = 129 bits (325), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 14/228 (6%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMF-LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
I++M + S + A F L+ ++A +L + +QGI ++ + +++ Q +S
Sbjct: 1292 IKVMPPELSGAKSARAAETVRPKTFFVLQALKA-VLPGVIVQGIPSVNRAVINV-QENS- 1348
Query: 1519 KRIIITESGEFKAIAD---WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1575
SG A + L +G L V+ +D RT SN I E+F LG+EA
Sbjct: 1349 -------SGAASGAAPKERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEVFHTLGVEAA 1401
Query: 1576 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1635
R + +E+ +++ YG+ ++ RHL LL DVMT KG ++ ITR G+++ LM SFE+
Sbjct: 1402 RIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEK 1461
Query: 1636 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
T D L DA+ H D + GVSE IIMG +GTG F LL++ +K K
Sbjct: 1462 TTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLLMNEDKIKP 1509
>gi|15669232|ref|NP_248037.1| DNA-directed RNA polymerase subunit A [Methanocaldococcus jannaschii
DSM 2661]
gi|2500639|sp|Q58446.1|RPOA2_METJA RecName: Full=DNA-directed RNA polymerase subunit A''; Contains:
RecName: Full=Mja rpoA2 intein; AltName: Full=Mja rpol
A'' intein
gi|1591697|gb|AAB99047.1| DNA-directed RNA polymerase, subunit A'' (rpoA2) [Methanocaldococcus
jannaschii DSM 2661]
Length = 859
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 106/186 (56%), Gaps = 18/186 (9%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ L+GI I +R+++ + G +++L T G++L +V V
Sbjct: 683 IKNIQLKGIPGI-------------ERVLVKKEG-----GEYVLYTQGSNLREVFKIDGV 724
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D RT +N+I EI +VLGIEA R ++ EM L+ GL V+ RHL L+ D+MTA G +
Sbjct: 725 DTTRTITNNIIEIQEVLGIEAARNAIINEMRNTLEQQGLEVDIRHLMLVADIMTADGEVK 784
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
I RHG+ + L R +FEETV L AA + D ++GV EN+I+G+ +GTGC +
Sbjct: 785 PIGRHGVAGEKGSVLARAAFEETVKHLYAAAERGDVDKLKGVIENVIVGKPIYLGTGCVE 844
Query: 1674 LLLDAE 1679
L +D E
Sbjct: 845 LTIDRE 850
>gi|57157185|dbj|BAD83622.1| RNA polymerase II subunit Rpb1 [Entamoeba histolytica]
Length = 1589
Score = 127 bits (320), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 4/190 (2%)
Query: 1493 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
+L + + GIE I KV +PQ ++ E+ + W++ T+G+++ + +
Sbjct: 1248 LLRTVVISGIEGITKVI--IPQKPKNAIVVDPETKMLRDQLQWVVFTEGSNMAGLAECDN 1305
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VD +T +N++ E F LGIEA R +E E+ L G YVN+RHLAL+ DVMT G +
Sbjct: 1306 VDFYKTVTNNVYETFLYLGIEAGRTQLEAELIKTLS--GSYVNFRHLALMADVMTFTGRI 1363
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
R G++R G + R S E+T++ AAA +E+D + G+S+NI+MGQ GTG F
Sbjct: 1364 QPFNRMGLSRGRAGVITRASSEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGTGAF 1423
Query: 1673 DLLLDAEKCK 1682
+LLD + K
Sbjct: 1424 TVLLDIDSLK 1433
>gi|333911409|ref|YP_004485142.1| DNA-directed RNA polymerase subunit A'' [Methanotorris igneus Kol 5]
gi|333751998|gb|AEF97077.1| DNA-directed RNA polymerase, subunit A'' [Methanotorris igneus Kol 5]
Length = 864
Score = 127 bits (320), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+II + G+ +++L ++G++L +V VD RT +N+I EI +VLGIEA R ++
Sbjct: 688 RVIIKKEGD-----EYVLYSEGSNLKEVFKIEGVDKTRTITNNIIEIQEVLGIEAARNAI 742
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EM + L+ GL V+ RHL L+ D+MTA G + I RHG+ + L R +FEETV
Sbjct: 743 INEMKSTLEEQGLDVDIRHLMLVADIMTADGEVKPIGRHGVGGEKASVLARAAFEETVKH 802
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
L AA D ++GV EN+I+G+ +GTGC L +D
Sbjct: 803 LYTAAIRGYKDELKGVIENVIVGKPIYLGTGCVKLYID 840
>gi|284162090|ref|YP_003400713.1| DNA-directed RNA polymerase subunit A'' [Archaeoglobus profundus DSM
5631]
gi|284012087|gb|ADB58040.1| DNA-directed RNA polymerase, subunit A'' [Archaeoglobus profundus DSM
5631]
Length = 377
Score = 127 bits (319), Expect = 6e-26, Method: Composition-based stats.
Identities = 71/162 (43%), Positives = 107/162 (66%), Gaps = 5/162 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR+II + G+ +++L T+G++L KV+ + VD RT +NDI EI++VLGIEA R +
Sbjct: 221 KRVIIRKEGD-----EYVLYTEGSNLKKVMKVKGVDFTRTLTNDIYEIYEVLGIEAARAA 275
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ KE L+ GL V+ RH+ L+ DVMTA G+L I RHG+ L R +FE TV+
Sbjct: 276 IIKEAKETLEEQGLDVDVRHIMLVADVMTADGYLKQIGRHGVAGAKQSILARAAFEVTVN 335
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
VL+DAA E D ++G++ENII+GQ ++GTG +L+ ++
Sbjct: 336 VLLDAAVKGEVDYLKGITENIIVGQPIKLGTGDVELVYKPKR 377
>gi|148642968|ref|YP_001273481.1| DNA-directed RNA polymerase subunit A'' [Methanobrevibacter smithii
ATCC 35061]
gi|148551985|gb|ABQ87113.1| DNA-dependent RNA polymerase, subunit A, RpoA [Methanobrevibacter
smithii ATCC 35061]
Length = 403
Score = 127 bits (318), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 19/189 (10%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLM 1545
LR + A+ D+ + GI+ IGKV + + D + +W++ T+G++L
Sbjct: 227 LRLL-ADKFRDLQISGIKDIGKVII---RKDER---------------EWIMHTEGSNLK 267
Query: 1546 KVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDV 1605
+LS +D RT +NDI EI VLGIEA R+S+ E L+ GL V+ RH+ L+ D+
Sbjct: 268 DILSMEGIDTYRTTTNDIHEIETVLGIEAARQSIINEARNTLENQGLSVDVRHIMLVADI 327
Query: 1606 MTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLP 1665
MT++G + +I RHGI+ + + L R +FEET L+ A+ E D + G+ ENII+GQ
Sbjct: 328 MTSEGEVKSIGRHGISGEKSSVLARAAFEETGKHLLRASIRGEVDDLTGIIENIIIGQPI 387
Query: 1666 RMGTGCFDL 1674
+GTG +
Sbjct: 388 PLGTGSIGV 396
>gi|222445205|ref|ZP_03607720.1| hypothetical protein METSMIALI_00828 [Methanobrevibacter smithii DSM
2375]
gi|261350233|ref|ZP_05975650.1| DNA-directed RNA polymerase, subunit A [Methanobrevibacter smithii
DSM 2374]
gi|222434770|gb|EEE41935.1| DNA-directed RNA polymerase, subunit A'' [Methanobrevibacter smithii
DSM 2375]
gi|288861019|gb|EFC93317.1| DNA-directed RNA polymerase, subunit A [Methanobrevibacter smithii
DSM 2374]
Length = 403
Score = 127 bits (318), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 19/189 (10%)
Query: 1486 LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLM 1545
LR + A+ D+ + GI+ IGKV + + D + +W++ T+G++L
Sbjct: 227 LRLL-ADKFRDLQISGIKDIGKVII---RKDER---------------EWIMHTEGSNLK 267
Query: 1546 KVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDV 1605
+LS +D RT +NDI EI VLGIEA R+S+ E L+ GL V+ RH+ L+ D+
Sbjct: 268 DILSMEGIDTYRTTTNDIHEIETVLGIEAARQSIINEARNTLENQGLSVDVRHIMLVADI 327
Query: 1606 MTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLP 1665
MT++G + +I RHGI+ + + L R +FEET L+ A+ E D + G+ ENII+GQ
Sbjct: 328 MTSEGEVKSIGRHGISGEKSSVLARAAFEETGKHLLRASIRGEVDDLTGIIENIIIGQPI 387
Query: 1666 RMGTGCFDL 1674
+GTG +
Sbjct: 388 PLGTGSIGV 396
>gi|50346873|gb|AAT75143.1| RNA polymerase 2 [Oscheius myriophila]
Length = 81
Score = 125 bits (315), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 66/74 (89%)
Query: 1473 EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAI 1532
EE+ +DKMEDDMFLRCIE+NMLSD+TLQGI +I KVYMH P TD KKR+IIT G+FKAI
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKKRVIITPEGDFKAI 67
Query: 1533 ADWLLETDGTSLMK 1546
ADW+LETDGT+L++
Sbjct: 68 ADWILETDGTALLR 81
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 45 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 83
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 87 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 125
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 129 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 167
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 171 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 209
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 213 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 251
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 255 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 293
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 297 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 335
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 339 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 377
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 381 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 419
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 423 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 461
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 465 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 503
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 507 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 545
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 549 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 587
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 591 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 629
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 633 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 671
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 675 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 713
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 717 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 755
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 759 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 797
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 801 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 839
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 843 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 881
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 885 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 923
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 927 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 965
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 969 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1007
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1011 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1049
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1053 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1091
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1095 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1133
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1137 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1175
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1179 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1217
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1221 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1259
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1263 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1301
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1305 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1343
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1347 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1385
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 1389 EEDAVDKMEDDMFLRCIEANMLSDMTLQ--------FIRIMNSDDSK 1427
EE+ +DKMEDDMFLRCIE+NMLSD+TLQ ++ N+DD K
Sbjct: 8 EEEQIDKMEDDMFLRCIESNMLSDLTLQGISSIAKVYMHKPNTDDKK 54
>gi|344237791|gb|EGV93894.1| DNA-directed RNA polymerase II subunit RPB1 [Cricetulus griseus]
Length = 617
Score = 125 bits (315), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 62/70 (88%)
Query: 1568 QVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1627
+VLGIEAVRK++E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG
Sbjct: 541 KVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGP 600
Query: 1628 LMRCSFEETV 1637
LM+CSFEETV
Sbjct: 601 LMKCSFEETV 610
>gi|48477329|ref|YP_023035.1| DNA-directed RNA polymerase subunit A'' [Picrophilus torridus DSM
9790]
gi|48429977|gb|AAT42842.1| DNA-directed RNA polymerase subunit A'''' [Picrophilus torridus DSM
9790]
Length = 508
Score = 125 bits (315), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 88/146 (60%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W + T G++L VL +VDP RT++NDI EI QVLGIEA R ++ E L GL V
Sbjct: 358 WKIYTQGSNLKGVLDIDEVDPTRTYTNDIIEIEQVLGIEAARNAIYLEAERTLSEQGLNV 417
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RHL L+ D+MT G++ A+ R GI+ + + L R +FE T L+ A E D + G
Sbjct: 418 DKRHLMLVADMMTFSGNVRAVGRQGISGRKSSVLARAAFEITSKHLLKAGLLGEVDQLAG 477
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEK 1680
V+ENII+GQ +GTG +L+ K
Sbjct: 478 VAENIIVGQPITLGTGAINLVYSGIK 503
>gi|324506264|gb|ADY42679.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 492
Score = 125 bits (313), Expect = 3e-25, Method: Composition-based stats.
Identities = 62/128 (48%), Positives = 81/128 (63%), Gaps = 3/128 (2%)
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
MAI+RHGINRQ+ GALMRCSFEETVD+L +AA H E D ++GVSENI++GQL R GTGCF
Sbjct: 1 MAISRHGINRQEMGALMRCSFEETVDILTEAAVHTEQDFIKGVSENIMLGQLARGGTGCF 60
Query: 1673 DLLLDAEKCKDGIEIPLATGMMGGPAGMFF-GSAATPSSMIHNPLQTPHNTSLTNATHQS 1731
DLL+D E CK G+++ A + ++ G++ S + P + N T S
Sbjct: 61 DLLIDVENCKQGMQLQPACPLSASTRSLWLSGNSPAASRAMVTPAYASERSCTPNITPTS 120
Query: 1732 RDKAFAPS 1739
F PS
Sbjct: 121 --AVFTPS 126
>gi|327401231|ref|YP_004342070.1| DNA-directed RNA polymerase subunit A'' [Archaeoglobus veneficus
SNP6]
gi|327316739|gb|AEA47355.1| DNA-directed RNA polymerase subunit A'' [Archaeoglobus veneficus
SNP6]
Length = 376
Score = 125 bits (313), Expect = 3e-25, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 104/157 (66%), Gaps = 5/157 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+R+II + + +++L T+G++L KV+ + VDP RT +NDI EI++VLGIEA R +
Sbjct: 221 RRVIIRKEDD-----EYVLYTEGSNLKKVMKIKGVDPTRTLTNDIYEIYEVLGIEAARNA 275
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
V +E + L+ GL VN RH+ L+ DVMTA G L I RHG+ + L R +FE TV+
Sbjct: 276 VIREAISTLEEQGLEVNVRHIMLVADVMTADGELKQIGRHGVAGEKQSILARAAFEMTVN 335
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
L+DAA E D + G++ENII+GQ ++GTG +L+
Sbjct: 336 NLLDAAVRGEIDRLSGITENIIVGQPIKLGTGDVELI 372
>gi|374635619|ref|ZP_09707214.1| DNA-directed RNA polymerase, subunit A'' [Methanotorris formicicus
Mc-S-70]
gi|373561685|gb|EHP87914.1| DNA-directed RNA polymerase, subunit A'' [Methanotorris formicicus
Mc-S-70]
Length = 873
Score = 124 bits (312), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 96/158 (60%), Gaps = 5/158 (3%)
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+II + G+ +++L ++G++L +V VD RT +N+I EI +VLGIEA R ++
Sbjct: 697 RVIIKKEGD-----EYVLYSEGSNLKEVFKIEGVDITRTTTNNIIEIQEVLGIEAARNAI 751
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EM + L GL V+ RHL L+ D+MTA G + I RHG+ + L R +FEETV
Sbjct: 752 INEMKSTLDDQGLDVDIRHLMLVADIMTADGEVKPIGRHGVGGEKASVLARAAFEETVKH 811
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
L AA D ++GV EN+I+G+ +GTGC L +D
Sbjct: 812 LYTAAIRGYKDELKGVIENVIVGKPIYLGTGCVKLYID 849
>gi|13111552|gb|AAK12371.1| RNA polymerase II largest subunit [Peripatus sp. Per2]
gi|38232431|gb|AAR15051.1| RNA polymerase II largest subunit [Peripatus sp. Per2]
Length = 300
Score = 124 bits (312), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 63/65 (96%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
MEAISEKINAGFGDDLNCIFNDDNA+KLVLRIRIMNSD+SK Q+EE+ VDKMEDD+FLRC
Sbjct: 236 MEAISEKINAGFGDDLNCIFNDDNADKLVLRIRIMNSDESKFQEEEEQVDKMEDDVFLRC 295
Query: 61 IEANM 65
IEANM
Sbjct: 296 IEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 149
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 191
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 233
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 275
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 317
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 359
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 401
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 443
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 485
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 527
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 569
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 611
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 653
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 695
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 737
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 779
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 821
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 863
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 905
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 947
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 989
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1031
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1073
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1115
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1157
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1199
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1241
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1283
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1325
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1367
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1409
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1418 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1451
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM 1493
IRIMNSD+SK Q+EE+ VDKMEDD+FLRCIEANM
Sbjct: 267 IRIMNSDESKFQEEEEQVDKMEDDVFLRCIEANM 300
>gi|323457244|gb|EGB13110.1| hypothetical protein AURANDRAFT_35850 [Aureococcus anophagefferens]
Length = 1398
Score = 124 bits (311), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 118/235 (50%), Gaps = 16/235 (6%)
Query: 1445 RCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA--NMLSDMTLQGI 1502
R ++A M S IR + ++ + D + DD ++A + L + + G+
Sbjct: 1157 RVLQAVMASGRAPPVIRALKNEHVLLNPNHRNRDMLSDDRTYFAMQALKSALPSIVVGGV 1216
Query: 1503 EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1562
+I R ++ E E + A + L +G L V+ VD RT +N
Sbjct: 1217 SSI-------------NRAVVNED-EGSSPATYHLLVEGYGLADVMGTPGVDGRRTTTNH 1262
Query: 1563 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
+ EI VLGIEA R ++ E+ ++ YG+ ++ RHL LL DVMT KG ++ ITR G+++
Sbjct: 1263 VAEIEAVLGIEAARSTIANEITYIMSAYGIGIDARHLMLLSDVMTFKGVVLGITRFGVSK 1322
Query: 1623 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
LM SFE T D L DAAAH D + GVSE IIMG +G G F LL D
Sbjct: 1323 MRESVLMLASFERTTDHLFDAAAHGRRDNIVGVSECIIMGIPIPLGCGSFKLLRD 1377
>gi|452210795|ref|YP_007490909.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina mazei Tuc01]
gi|452100697|gb|AGF97637.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina mazei Tuc01]
Length = 407
Score = 124 bits (310), Expect = 6e-25, Method: Composition-based stats.
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 20/198 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++TL+GIE I KR+++ + GE ++ L T+G++L +VL
Sbjct: 216 AKSIHNVTLKGIEGI-------------KRVVVRKEGE-----EYTLYTEGSALREVLQF 257
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI++VLGIEA R ++ KE L+ GL V+ RH+ L+ D+MT+ G
Sbjct: 258 EGVDRTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSDG 317
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA D ++GV+ENII+GQ RMGTG
Sbjct: 318 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGTG 377
Query: 1671 CFDLLLDAEKCKDGIEIP 1688
D+ L + K + +E+P
Sbjct: 378 --DVHLISRKAEKVVEVP 393
>gi|435852041|ref|YP_007313627.1| DNA-directed RNA polymerase, subunit A'' [Methanomethylovorans
hollandica DSM 15978]
gi|433662671|gb|AGB50097.1| DNA-directed RNA polymerase, subunit A'' [Methanomethylovorans
hollandica DSM 15978]
Length = 380
Score = 124 bits (310), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 106/185 (57%), Gaps = 18/185 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A ++ +TL+GIE + KR++I + + +++L T+G+ L KVL
Sbjct: 212 AKNINSITLKGIEGV-------------KRVVIRKDSD-----EYMLYTEGSQLKKVLEV 253
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT++N+I EI+ V GIEA R ++ KE + L GL V+ RH+ L+ D+M G
Sbjct: 254 EGVDISRTYTNNISEIYDVFGIEAARNAIIKEATSTLGEQGLTVDIRHIMLVSDIMCCDG 313
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA + D + GV+ENII+GQ ++GTG
Sbjct: 314 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGDIDELNGVTENIIVGQPIKLGTG 373
Query: 1671 CFDLL 1675
L+
Sbjct: 374 DVHLV 378
>gi|397622848|gb|EJK66806.1| hypothetical protein THAOC_12234 [Thalassiosira oceanica]
Length = 1020
Score = 124 bits (310), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 14/195 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI ++ R +I E + + L +G L +V+ V
Sbjct: 830 LPGVIVQGISSV-------------NRAVINEESK-GGKPSYHLLVEGCGLAEVMGSPGV 875
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D T +N I E+ Q LG+EA R S+ E++ ++ YG+ ++ RHL LL DVMT KG ++
Sbjct: 876 DGKFTTTNHIMEVEQTLGVEAARTSISSEISYIMTAYGIGIDSRHLMLLSDVMTFKGEVL 935
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA H AD + GVSE IIMG +GTG F
Sbjct: 936 GITRFGVAKMRESVLMLASFEKTTDHLFDAAVHGRADAINGVSECIIMGIPVPIGTGLFK 995
Query: 1674 LLLDAEKCKDGIEIP 1688
LL A + + +P
Sbjct: 996 LLKRATRPSEPDPVP 1010
>gi|371943667|gb|AEX61495.1| DNA-directed RNA polymerase subunit 1 [Megavirus courdo7]
Length = 1502
Score = 124 bits (310), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
E G +++ T+G +L ++ ++ T NDI I++ G+EA R + KE N
Sbjct: 1313 EQGNVVNKKHFIVVTEGINLSEISQINGINLEETKCNDIVTIYETYGVEAARTAFIKEFN 1372
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
++ G + NY+H+ +L D +T G L+A+ RHG N+ DT R SFE+TV+ L+ AA
Sbjct: 1373 IAIESSGGFSNYQHVEILADAVTHMGGLIAVNRHGANKLDTDPFSRASFEKTVEQLLAAA 1432
Query: 1645 AHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI-EIPLAT 1691
A E D +R VS I++G L GTGCFDLLLD K K+ + E P+ T
Sbjct: 1433 AFGETDHIRSVSARIMVGNLINGGTGCFDLLLDHIKIKNTLQEEPVET 1480
>gi|363540008|ref|YP_004894424.1| mg373 gene product [Megavirus chiliensis]
gi|448825325|ref|YP_007418256.1| DNA-directed RNA polymerase subunit 1 [Megavirus lba]
gi|350611173|gb|AEQ32617.1| DNA-directed RNA polymerase subunit 1 [Megavirus chiliensis]
gi|425701254|gb|AFX92416.1| DNA-directed RNA polymerase subunit 1 [Megavirus courdo11]
gi|444236510|gb|AGD92280.1| DNA-directed RNA polymerase subunit 1 [Megavirus lba]
Length = 1491
Score = 124 bits (310), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
E G +++ T+G +L ++ ++ T NDI I++ G+EA R + KE N
Sbjct: 1302 EQGNVVNKKHFIVVTEGINLSEISQINGINLEETKCNDIVTIYETYGVEAARTAFIKEFN 1361
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
++ G + NY+H+ +L D +T G L+A+ RHG N+ DT R SFE+TV+ L+ AA
Sbjct: 1362 IAIESSGGFSNYQHVEILADAVTHMGGLIAVNRHGANKLDTDPFSRASFEKTVEQLLAAA 1421
Query: 1645 AHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGI-EIPLAT 1691
A E D +R VS I++G L GTGCFDLLLD K K+ + E P+ T
Sbjct: 1422 AFGETDHIRSVSARIMVGNLINGGTGCFDLLLDHIKIKNTLQEEPVET 1469
>gi|371945115|gb|AEX62936.1| DNA-directed RNA polymerase subunit 1 [Moumouvirus Monve]
Length = 1504
Score = 124 bits (310), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 90/150 (60%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+++ TDG +L ++ ++ T NDI I++ G+EA R + KE ++ G +
Sbjct: 1324 HFIVVTDGINLSEIAQINGINLDETICNDIVTIYETYGVEAARTAFIKEFTIAIESSGGF 1383
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
NY+H+ LL D +T G L+A+ RHG N+ DT R SFE+TV+ L+ AAA E D +R
Sbjct: 1384 SNYQHIELLADAITHMGGLIAVNRHGANKLDTDPFSRASFEKTVEQLLAAAAFGETDHIR 1443
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
VS I++G L GTGCFDLLLD K K+
Sbjct: 1444 SVSARIMVGNLINGGTGCFDLLLDHIKIKN 1473
>gi|441432235|ref|YP_007354277.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba polyphaga
moumouvirus]
gi|440383315|gb|AGC01841.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba polyphaga
moumouvirus]
Length = 1504
Score = 124 bits (310), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 90/150 (60%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+++ TDG +L ++ ++ T NDI I++ G+EA R + KE ++ G +
Sbjct: 1324 HFIVVTDGINLSEIAQINGINLDETICNDIVTIYETYGVEAARTAFIKEFTIAIESSGGF 1383
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
NY+H+ LL D +T G L+A+ RHG N+ DT R SFE+TV+ L+ AAA E D +R
Sbjct: 1384 SNYQHIELLADAITHMGGLIAVNRHGANKLDTDPFSRASFEKTVEQLLAAAAFGETDHIR 1443
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
VS I++G L GTGCFDLLLD K K+
Sbjct: 1444 SVSARIMVGNLINGGTGCFDLLLDHIKIKN 1473
>gi|451927572|gb|AGF85450.1| directed RNA polymerase (II) subunit 1 [Moumouvirus goulette]
Length = 1493
Score = 124 bits (310), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 90/150 (60%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+++ TDG +L ++ ++ T NDI I++ G+EA R + KE ++ G +
Sbjct: 1313 HFVVVTDGINLSEIAQINGINLDETICNDIVTIYETYGVEAARTAFIKEFTIAIESSGGF 1372
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
NY+H+ LL D +T G L+A+ RHG N+ DT R SFE+TV+ L+ AAA E D +R
Sbjct: 1373 SNYQHIELLADAITHMGGLIAVNRHGANKLDTDPFSRASFEKTVEQLLAAAAFGETDHIR 1432
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
VS I++G L GTGCFDLLLD K K+
Sbjct: 1433 SVSARIMVGNLINGGTGCFDLLLDHIKIKN 1462
>gi|424814018|ref|ZP_18239196.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Candidatus
Nanosalina sp. J07AB43]
gi|339757634|gb|EGQ42891.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Candidatus
Nanosalina sp. J07AB43]
Length = 370
Score = 123 bits (309), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 87/141 (61%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W L+T GTSL K L +VD RT SND+ EI VLGIEA+R+S+ E+N L+ G+
Sbjct: 221 EWRLQTAGTSLRKTLKIEEVDENRTISNDLFEILSVLGIEALRQSIINEVNETLEAQGIG 280
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ LL D+MT +G L TR+GI L R FEET L +++ E D +
Sbjct: 281 VDDRHIMLLADMMTKEGDLNGTTRYGIMGNKESLLARSVFEETKKHLRESSLRGETDNLE 340
Query: 1654 GVSENIIMGQLPRMGTGCFDL 1674
GV ENI++GQ +GTG DL
Sbjct: 341 GVIENILVGQPIPVGTGAVDL 361
>gi|21228372|ref|NP_634294.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina mazei Go1]
gi|23822083|sp|Q8PUR2.1|RPOA2_METMA RecName: Full=DNA-directed RNA polymerase subunit A''
gi|20906842|gb|AAM31966.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina mazei Go1]
Length = 408
Score = 123 bits (309), Expect = 8e-25, Method: Composition-based stats.
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 20/198 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++TL+GIE I KR+++ + GE ++ L T+G++L +VL
Sbjct: 217 AKSIHNVTLKGIEGI-------------KRVVVRKEGE-----EYTLYTEGSALREVLQF 258
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI++VLGIEA R ++ KE L+ GL V+ RH+ L+ D+MT+ G
Sbjct: 259 EGVDRTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSDG 318
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA D ++GV+ENII+GQ RMGTG
Sbjct: 319 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGTG 378
Query: 1671 CFDLLLDAEKCKDGIEIP 1688
D+ L + K + +E+P
Sbjct: 379 --DVHLISRKAEKVVEVP 394
>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1273
Score = 123 bits (309), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 95/150 (63%), Gaps = 3/150 (2%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W+++T G++L KV++ VD R +N++ EI+Q LGIEA R ++ KE+ L+ GL
Sbjct: 1117 EWVIQTAGSNLAKVVAVDGVDLTRVTTNNVYEIWQTLGIEAARTALIKEITNTLEEQGLE 1176
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ L+ D+MT+KG+L I RHGI T L R +FE TV + A+ + + ++
Sbjct: 1177 VDTRHIMLVADLMTSKGYLQQIGRHGIAGTKTSVLARAAFEITVPTIARASLEGQIETLK 1236
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
GV+EN+I+G +GTG DL + K KD
Sbjct: 1237 GVTENVIVGATVPVGTGMVDLYM---KVKD 1263
>gi|296109330|ref|YP_003616279.1| RNA polymerase Rpb1 domain 5 [methanocaldococcus infernus ME]
gi|295434144|gb|ADG13315.1| RNA polymerase Rpb1 domain 5 [Methanocaldococcus infernus ME]
Length = 822
Score = 123 bits (308), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 106/186 (56%), Gaps = 16/186 (8%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ L+GI I +V L + D K +GE+ ++ T G++L +V V
Sbjct: 646 IKNILLKGIPGITRV---LVKKDDK-------TGEY------VIHTQGSNLREVFKIEGV 689
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D RT +N+I EI +VLGIEA R ++ EM L+ GL V+ RHL L+ D+MTA G +
Sbjct: 690 DTRRTITNNIIEIQEVLGIEAARNAIINEMKNTLEQQGLEVDIRHLMLVADMMTADGEVK 749
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
I RHG+ + L R +FEETV L A+ E D ++GV EN+I+G+ +GTGC
Sbjct: 750 PIGRHGVAGEKGSVLARAAFEETVKHLYSASEKGEVDKLKGVIENVIVGKPIFLGTGCVR 809
Query: 1674 LLLDAE 1679
L +D E
Sbjct: 810 LEIDRE 815
>gi|194758651|ref|XP_001961575.1| GF14868 [Drosophila ananassae]
gi|190615272|gb|EDV30796.1| GF14868 [Drosophila ananassae]
Length = 1301
Score = 123 bits (308), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
A + L +G L V++ V V T SN+ICEI+Q LGIEA R + E+ V++ +G+
Sbjct: 1134 ATYKLCIEGYGLRDVIATYGVVGVHTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGM 1193
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V++RH+ LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D +
Sbjct: 1194 SVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAI 1253
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP 1688
GVSE II+G +GTG F LL C + ++P
Sbjct: 1254 NGVSERIILGMPAGIGTGIFKLL----HCHENKQVP 1285
>gi|257076604|ref|ZP_05570965.1| DNA-directed RNA polymerase subunit A'' [Ferroplasma acidarmanus
fer1]
Length = 504
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 87/146 (59%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W++ T G++L +VL+ VD RT +NDI EI V GIEA R ++ +E L GL V
Sbjct: 358 WVIYTQGSNLREVLNIEGVDSNRTTTNDIIEIENVFGIEAARNAIYREAENTLSEQGLNV 417
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RHL L+ D+MT G + A+ R GI+ + + L R +FE T L+ A E DP+ G
Sbjct: 418 DKRHLMLVADMMTFSGAVRAVGRQGISGRKSSVLARAAFEITSKHLLKAGLLGEIDPLAG 477
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEK 1680
V+ENII+GQ +GTG DL+ K
Sbjct: 478 VAENIIVGQPITLGTGAIDLVYRGNK 503
>gi|398257327|gb|EJN40935.1| DNA directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
lentillevirus]
Length = 1495
Score = 122 bits (306), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 90/146 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+++ +G +L ++ +D +RT NDI I+++ G+EA R + KE ++ G +
Sbjct: 1316 YVIIAEGINLSEMSQINGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFS 1375
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NY+H+ +L D +T G L+ + RHG N+ DT R SFE+TV+ L+ AA E+D MR
Sbjct: 1376 NYQHIEILADAITHMGGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGESDHMRS 1435
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEK 1680
VS I++G L GTGCFDLLLD +K
Sbjct: 1436 VSARIMVGALINGGTGCFDLLLDHKK 1461
>gi|311977893|ref|YP_003987013.1| DNA-directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
mimivirus]
gi|81990383|sp|Q7T6X5.2|RPO1_MIMIV RecName: Full=DNA-directed RNA polymerase subunit 1
gi|55664871|gb|AAQ09585.2| DNA directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
mimivirus]
gi|308204869|gb|ADO18670.1| DNA-directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
mimivirus]
gi|339061439|gb|AEJ34743.1| DNA-directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
mimivirus]
Length = 1495
Score = 122 bits (306), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 90/146 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+++ +G +L ++ +D +RT NDI I+++ G+EA R + KE ++ G +
Sbjct: 1316 YVIIAEGINLSEMSQINGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFS 1375
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NY+H+ +L D +T G L+ + RHG N+ DT R SFE+TV+ L+ AA E+D MR
Sbjct: 1376 NYQHIEILADAITHMGGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGESDHMRS 1435
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEK 1680
VS I++G L GTGCFDLLLD +K
Sbjct: 1436 VSARIMVGALINGGTGCFDLLLDHKK 1461
>gi|351737659|gb|AEQ60694.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba castellanii
mamavirus]
Length = 1478
Score = 122 bits (306), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 90/146 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+++ +G +L ++ +D +RT NDI I+++ G+EA R + KE ++ G +
Sbjct: 1327 YVIIAEGINLSEMSQINGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFS 1386
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NY+H+ +L D +T G L+ + RHG N+ DT R SFE+TV+ L+ AA E+D MR
Sbjct: 1387 NYQHIEILADAITHMGGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGESDHMRS 1446
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEK 1680
VS I++G L GTGCFDLLLD +K
Sbjct: 1447 VSARIMVGALINGGTGCFDLLLDHKK 1472
>gi|116753355|ref|YP_842473.1| DNA-directed RNA polymerase subunit A'' [Methanosaeta thermophila PT]
gi|116664806|gb|ABK13833.1| DNA-directed RNA polymerase, subunit A' [Methanosaeta thermophila PT]
Length = 384
Score = 122 bits (305), Expect = 3e-24, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 110/177 (62%), Gaps = 7/177 (3%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
LQ +E I KV L D KR++I + G+ +++L T+G+SL +VL VDP RT
Sbjct: 206 LQLVERIKKVT--LKGVDGIKRVVIRKEGD-----EYVLYTEGSSLKEVLEFEGVDPTRT 258
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+N+I EI +VLGIEA R ++ E L+ GL V+ RH+ L+ D+MT G + I RH
Sbjct: 259 KTNNINEICEVLGIEAARNAIINEATETLREQGLQVDVRHIMLVADIMTCDGDVKQIGRH 318
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
G++ + L R +FE TV+ ++DAA + D +RGV+EN+I+GQ R+GTG L+
Sbjct: 319 GVSGEKASVLARAAFEVTVNHILDAAIRGDVDDLRGVTENVIVGQPIRLGTGDVQLV 375
>gi|348676845|gb|EGZ16662.1| hypothetical protein PHYSODRAFT_500633 [Phytophthora sojae]
Length = 1532
Score = 121 bits (304), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 88/146 (60%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V+ VD + T SN I E+ + LGIEA R+ + E+N ++ YG+ ++
Sbjct: 1375 LLVEGYGLAEVMGIPGVDGLHTTSNHIIEVEKTLGIEAARELISSEVNYIMSAYGIGIDR 1434
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RHL LL D+MT KG ++ ITR GI + LM SFE+T D L DAA H+ D + GVS
Sbjct: 1435 RHLMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVS 1494
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCK 1682
E IIMG +GTG F LL EK +
Sbjct: 1495 ECIIMGIPIPLGTGIFKLLRQVEKPR 1520
>gi|261403644|ref|YP_003247868.1| RNA polymerase Rpb1 domain 5 [Methanocaldococcus vulcanius M7]
gi|261370637|gb|ACX73386.1| RNA polymerase Rpb1 domain 5 [Methanocaldococcus vulcanius M7]
Length = 799
Score = 121 bits (304), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 106/184 (57%), Gaps = 14/184 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ L+GI I +V + + D K+ +++L + G++L +V V
Sbjct: 618 IKNIQLKGIPGIERVLVKKEERDGKE--------------EYVLYSQGSNLREVFKIEGV 663
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D RT +N+I EI +VLGIEA R ++ EM L+ GL V+ RHL L+ D+MTA G +
Sbjct: 664 DTTRTTTNNIIEIQEVLGIEAARNAIINEMRNTLEQQGLEVDVRHLMLVADIMTADGEVK 723
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
I RHG+ + L R +FEETV L +A + D ++GV EN+I+G+ +GTGC D
Sbjct: 724 PIGRHGVAGEKGSVLARAAFEETVKHLYASAERGDVDKLKGVIENVIVGKPIYLGTGCVD 783
Query: 1674 LLLD 1677
L++D
Sbjct: 784 LMID 787
>gi|301109379|ref|XP_002903770.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
infestans T30-4]
gi|262096773|gb|EEY54825.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
infestans T30-4]
Length = 1534
Score = 121 bits (303), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 92/157 (58%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V+ VD + T SN I E+ + LGIEA R+ + E+N ++ YG+ ++
Sbjct: 1378 LLVEGYGLAEVMGIPGVDGLHTTSNHIIEVEKTLGIEAARELISSEVNYIMSAYGIGIDR 1437
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RHL LL D+MT KG ++ ITR GI + LM SFE+T D L DAA H+ D + GVS
Sbjct: 1438 RHLMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVS 1497
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGM 1693
E IIMG +GTG F LL +K + PL G+
Sbjct: 1498 ECIIMGIPIPLGTGIFKLLRQVDKPRVQQRRPLLAGV 1534
>gi|198457645|ref|XP_002136234.1| GA22253, partial [Drosophila pseudoobscura pseudoobscura]
gi|198142520|gb|EDY71256.1| GA22253, partial [Drosophila pseudoobscura pseudoobscura]
Length = 419
Score = 120 bits (302), Expect = 5e-24, Method: Composition-based stats.
Identities = 63/143 (44%), Positives = 88/143 (61%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
A + L +G L +V+S V RT SN+ICEIFQ LGIEA R + E+ V++ +G+
Sbjct: 252 AIYKLCIEGYGLREVISTYGVVGERTRSNNICEIFQTLGIEAARTIIMSEITEVMEGHGM 311
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V++RH+ LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D +
Sbjct: 312 SVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDTI 371
Query: 1653 RGVSENIIMGQLPRMGTGCFDLL 1675
GVSE II+G +GTG F LL
Sbjct: 372 NGVSERIILGMPAGIGTGIFKLL 394
>gi|429329501|gb|AFZ81260.1| DNA-directed RNA polymerase III C1 subunit, putative [Babesia equi]
Length = 1548
Score = 120 bits (301), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 11/165 (6%)
Query: 1519 KRIII----TESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1574
KR II T SG + + +G L +V+ V +N I E+ QVLGIEA
Sbjct: 1389 KRAIIKRENTASG-----CQYQIAVEGYGLQEVMGAYGVQSNAVKTNHIYEVAQVLGIEA 1443
Query: 1575 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1634
R ++ E+ + Y + ++ R++ LL D+MT++G ++ I RHGI ++ T ALM SFE
Sbjct: 1444 ARSTIISEIQKCMDAYSIDIDGRYMKLLGDIMTSRGEVIGINRHGIKKRRTSALMLASFE 1503
Query: 1635 ETVDVLMDAAAHAEADPMRGVSENIIMG-QLPRMGTGCFDLLLDA 1678
ET + L +AA H+ DP++GVSE II+G Q+P +GTG FDLLL +
Sbjct: 1504 ETNEHLFEAAVHSRKDPVKGVSECIIVGKQMP-LGTGSFDLLLKS 1547
>gi|123316013|gb|ABM74385.1| RNA polymerase II largest subunit [Priapulus caudatus]
Length = 434
Score = 120 bits (301), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 63/67 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKINA FGDDLNCIFNDDNAEKLVLRIRIMN+D++K QD+E+ VDKM+DDMFLRC
Sbjct: 368 MEQISEKINAAFGDDLNCIFNDDNAEKLVLRIRIMNNDENKFQDDEEVVDKMDDDMFLRC 427
Query: 61 IEANMLS 67
IEANMLS
Sbjct: 428 IEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 151
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 193
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 235
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 277
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 319
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 361
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 403
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 445
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 487
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 529
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 571
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 613
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 655
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 697
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 739
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 781
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 823
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 865
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 907
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 949
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 991
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1033
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1075
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1117
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1159
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1201
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1243
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1285
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1327
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1369
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1411
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1418 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1453
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
Score = 60.8 bits (146), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1495
IRIMN+D++K QD+E+ VDKM+DDMFLRCIEANMLS
Sbjct: 399 IRIMNNDENKFQDDEEVVDKMDDDMFLRCIEANMLS 434
>gi|70606494|ref|YP_255364.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
DSM 639]
gi|449066706|ref|YP_007433788.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
N8]
gi|449068980|ref|YP_007436061.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920764|sp|P11514.2|RPOA2_SULAC RecName: Full=DNA-directed RNA polymerase subunit A''; Short=Subunit
C
gi|68567142|gb|AAY80071.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
DSM 639]
gi|449035214|gb|AGE70640.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
N8]
gi|449037488|gb|AGE72913.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
Ron12/I]
Length = 393
Score = 120 bits (301), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR I+ + G+ ++++ TDG++L +++ VD + +N+I E+ +VLGIEA R+
Sbjct: 236 KRAIVQKKGD-----EYVIITDGSNLEGIMNVTGVDINKIQTNNIHEVEEVLGIEAAREL 290
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E+ VL+ GL V+ RH+ L+ D+MT G + I RHG+ + + L R +FE TV
Sbjct: 291 ISREIKKVLEEQGLDVDMRHIVLVSDIMTRTGDIRQIGRHGVTGEKSSVLARAAFEVTVK 350
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
L+DAAA E + +GV ENII+GQ R+GTG +L
Sbjct: 351 HLLDAAARGEREEFKGVIENIIIGQPIRLGTGIVEL 386
>gi|20090126|ref|NP_616201.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina acetivorans
C2A]
gi|22096090|sp|Q8TRB8.1|RPOA2_METAC RecName: Full=DNA-directed RNA polymerase subunit A''
gi|19915106|gb|AAM04681.1| DNA-directed RNA polymerase, subunit A [Methanosarcina acetivorans
C2A]
Length = 397
Score = 120 bits (301), Expect = 8e-24, Method: Composition-based stats.
Identities = 72/180 (40%), Positives = 107/180 (59%), Gaps = 18/180 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++TL+GIE I KR+++ + GE ++ L T+G++L VL
Sbjct: 214 AKSIHNVTLKGIEGI-------------KRVVVRKEGE-----EYTLYTEGSALRDVLQF 255
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI++VLGIEA R ++ KE L+ GL V+ RH+ L+ D+MT G
Sbjct: 256 EGVDKTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTCDG 315
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA + D ++GV+ENII+GQ RMGTG
Sbjct: 316 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGDVDQLQGVTENIIVGQPIRMGTG 375
>gi|321448949|gb|EFX61656.1| hypothetical protein DAPPUDRAFT_338547 [Daphnia pulex]
Length = 77
Score = 120 bits (300), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 60/67 (89%)
Query: 1620 INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
I+RQDTGALM+C+ +ETV VL +AA HAE DP+RGVSEN+I+GQLPRMGTGCFDL LDAE
Sbjct: 7 IDRQDTGALMKCTVKETVSVLSEAAGHAEVDPLRGVSENLILGQLPRMGTGCFDLFLDAE 66
Query: 1680 KCKDGIE 1686
KCK+ IE
Sbjct: 67 KCKNAIE 73
>gi|330507366|ref|YP_004383794.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
gi|328928174|gb|AEB67976.1| DNA-directed RNA polymerase, subunit A' [Methanosaeta concilii GP6]
Length = 379
Score = 120 bits (300), Expect = 9e-24, Method: Composition-based stats.
Identities = 73/182 (40%), Positives = 112/182 (61%), Gaps = 9/182 (4%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
LQ +E I K + L + KR++I + G+ +++L T+G+SL KV+ VDP R
Sbjct: 206 LQLVEKIKK--LSLKGVEGIKRVVIRKEGD-----EYILYTEGSSLKKVMQFEGVDPTRI 258
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+N+I EI +VLGIEA R ++ E L+ GL V+ RH+ L+ D+MT G L I RH
Sbjct: 259 KTNNISEIGEVLGIEAARNAIINEATDTLREQGLSVDVRHIMLVADIMTVDGELKQIGRH 318
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1678
G++ + L R +FE TV+ ++DAA + D ++GV+EN+I+GQ ++GTG D+ L A
Sbjct: 319 GVSGEKASVLARAAFEVTVNHILDAAVRGDVDDLKGVTENVIVGQPIQLGTG--DVKLVA 376
Query: 1679 EK 1680
K
Sbjct: 377 SK 378
>gi|11499473|ref|NP_070714.1| DNA-directed RNA polymerase subunit A'' [Archaeoglobus fulgidus DSM
4304]
gi|14548238|sp|O28390.1|RPOA2_ARCFU RecName: Full=DNA-directed RNA polymerase subunit A''
gi|2648655|gb|AAB89364.1| DNA-directed RNA polymerase, subunit A'' (rpoA2) [Archaeoglobus
fulgidus DSM 4304]
Length = 380
Score = 120 bits (300), Expect = 9e-24, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR+II + + +++L T+G++L K++ + VD RT +N+I EI++VLGIEA R +
Sbjct: 222 KRVIIRKEED-----EYVLYTEGSNLKKIMKVKGVDFTRTTTNNIYEIYEVLGIEAARNA 276
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E L+ GL V+ RH+ L+ DVMTA G L I RHG+ + L R +FE TV+
Sbjct: 277 IIREALDTLEEQGLEVDVRHIMLVADVMTADGELRQIGRHGVAGEKQSILARAAFEMTVN 336
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAA E D +RG++ENII+GQ ++GTG +L+L
Sbjct: 337 NLLDAAVRGEEDHLRGITENIIVGQPIKLGTGDVELVL 374
>gi|195132669|ref|XP_002010765.1| GI21717 [Drosophila mojavensis]
gi|193907553|gb|EDW06420.1| GI21717 [Drosophila mojavensis]
Length = 1382
Score = 120 bits (300), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 88/146 (60%)
Query: 1530 KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQF 1589
K + L +G L +V++ V RT SN+ICEI+Q LGIEA R + E+ V++
Sbjct: 1212 KQPPTYKLCIEGYGLREVIATYGVVGERTRSNNICEIYQTLGIEAARTIIMSEITDVMEG 1271
Query: 1590 YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEA 1649
+G+ V++RH+ LL MTA+G ++ ITRHG+ + SFE+T D L DAA + +
Sbjct: 1272 HGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQT 1331
Query: 1650 DPMRGVSENIIMGQLPRMGTGCFDLL 1675
D + GVSE II+G +GTG F LL
Sbjct: 1332 DAINGVSERIILGMPAGIGTGIFKLL 1357
>gi|399218552|emb|CCF75439.1| unnamed protein product [Babesia microti strain RI]
Length = 1459
Score = 120 bits (300), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K+ +I E GE+ L +G L+ ++ V + SN + E+ +VLGIEA R
Sbjct: 1306 KRGVIKKEGGEYH------LAVEGYGLLNIMGIPGVVGTKVKSNHVIEVAKVLGIEAARS 1359
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
+ E+ + Y + ++YRH+ LL DVMT +G ++ I R GI + T LM SFEET
Sbjct: 1360 VIISEICKCMDAYSIEIDYRHMCLLGDVMTFRGEVLGINRFGIQKMRTSTLMLASFEETN 1419
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
+ L +AA H DP+ GVSE II G+ ++GTG FDLLL
Sbjct: 1420 EHLFEAAVHNRRDPICGVSECIITGKPIKLGTGSFDLLL 1458
>gi|403375855|gb|EJY87901.1| RNA polymerase III [Oxytricha trifallax]
Length = 1365
Score = 119 bits (299), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 104/186 (55%), Gaps = 15/186 (8%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
NML +++++GI + + + + D K ++ E G L +V+S
Sbjct: 1161 NMLPNVSVKGIPTVVRAVISKQEQDQSKHHLLVE---------------GYGLKQVMSTP 1205
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
+D T SN + E QVLGIEA R+++ E+ +Q +G+ ++ RH+ LL D+MT KG
Sbjct: 1206 GIDFRSTKSNHVIETEQVLGIEAARQTIINEIQYTMQSHGMNIDPRHIQLLADIMTFKGQ 1265
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
++ ITR G+++ LM SFE T D L D+A H + D + GVSE IIMG + +GTG
Sbjct: 1266 VLGITRFGVSKMKNSTLMLASFEMTTDHLYDSAVHCKKDEISGVSECIIMGNMIPIGTGL 1325
Query: 1672 FDLLLD 1677
F ++ D
Sbjct: 1326 FKVVYD 1331
>gi|195175837|ref|XP_002028612.1| GL10266 [Drosophila persimilis]
gi|194105884|gb|EDW27927.1| GL10266 [Drosophila persimilis]
Length = 260
Score = 119 bits (299), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/143 (44%), Positives = 88/143 (61%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
A + L +G L +V+S V RT SN+ICEIFQ LGIEA R + E+ V++ +G+
Sbjct: 93 AIYKLCIEGYGLREVISTYGVVGERTRSNNICEIFQTLGIEAARTIIMSEITEVMEGHGM 152
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V++RH+ LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D +
Sbjct: 153 SVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDTI 212
Query: 1653 RGVSENIIMGQLPRMGTGCFDLL 1675
GVSE II+G +GTG F LL
Sbjct: 213 NGVSERIILGMPAGIGTGIFKLL 235
>gi|321458572|gb|EFX69638.1| hypothetical protein DAPPUDRAFT_62003 [Daphnia pulex]
Length = 1238
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 91/146 (62%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G ++ +V++ + T SN+I E+F LGIEA + ++ KE+ + ++ +G+ V
Sbjct: 1072 YSLLVEGNNMREVMATYGIQGSSTTSNNILEVFSTLGIEAAKATIAKEIQSTMESHGMSV 1131
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ALL D+M+ +G ++ ITRHG+ + + LM SFE T D L DAA + + D + G
Sbjct: 1132 DRRHVALLSDLMSCRGEILGITRHGLAKMKSSVLMLASFERTSDHLFDAAYYGQEDEVSG 1191
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEK 1680
VSE IIMG +GTG F LL K
Sbjct: 1192 VSERIIMGVPMGIGTGSFKLLYKTGK 1217
>gi|194894264|ref|XP_001978037.1| GG17910 [Drosophila erecta]
gi|190649686|gb|EDV46964.1| GG17910 [Drosophila erecta]
Length = 1383
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 85/140 (60%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+G L V++ V RT SN+ICEI+Q LGIEA R + E+ V++ +G+ V++RH+
Sbjct: 1221 EGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHI 1280
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D + GVSE I
Sbjct: 1281 MLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERI 1340
Query: 1660 IMGQLPRMGTGCFDLLLDAE 1679
I+G +GTG F LL E
Sbjct: 1341 ILGMPAGIGTGIFKLLQHHE 1360
>gi|195478969|ref|XP_002100717.1| GE17218 [Drosophila yakuba]
gi|194188241|gb|EDX01825.1| GE17218 [Drosophila yakuba]
Length = 1383
Score = 119 bits (298), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 85/140 (60%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+G L V++ V RT SN+ICEI+Q LGIEA R + E+ V++ +G+ V++RH+
Sbjct: 1221 EGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHI 1280
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D + GVSE I
Sbjct: 1281 MLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERI 1340
Query: 1660 IMGQLPRMGTGCFDLLLDAE 1679
I+G +GTG F LL E
Sbjct: 1341 ILGMPAGIGTGIFKLLQHHE 1360
>gi|157841455|gb|ABV83192.1| RNA polymerase 2 [Protorhabditis sp. JB122]
Length = 69
Score = 119 bits (298), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 61/69 (88%)
Query: 1547 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1606
VLSER +DP RT SNDICEIF+VLGIEAVRK++++EM+ V F G YVNYRHLALLCDVM
Sbjct: 1 VLSERHIDPRRTSSNDICEIFEVLGIEAVRKAIQREMHNVXSFDGSYVNYRHLALLCDVM 60
Query: 1607 TAKGHLMAI 1615
TAKGHLMAI
Sbjct: 61 TAKGHLMAI 69
>gi|312136874|ref|YP_004004211.1| DNA-directed RNA polymerase, subunit a' [Methanothermus fervidus DSM
2088]
gi|311224593|gb|ADP77449.1| DNA-directed RNA polymerase, subunit A' [Methanothermus fervidus DSM
2088]
Length = 385
Score = 119 bits (298), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 91/143 (63%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
++++ T+G++L K+L VD RT +NDI EI +VLGIEA R ++ +E L+ GL
Sbjct: 235 EFVVVTEGSNLSKILKMDGVDKTRTTTNDIHEIEKVLGIEAARNAIIREAKNTLEEQGLT 294
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ L+ D+MT+ G + I RHG++ + L R +FEET L+ A+ E D +
Sbjct: 295 VDIRHIMLVADLMTSDGTIKPIGRHGVSGEKASVLARAAFEETSKHLLQASMRGEKDRLA 354
Query: 1654 GVSENIIMGQLPRMGTGCFDLLL 1676
G++EN+I+GQ +GTG +++
Sbjct: 355 GITENVIVGQPIPLGTGSIKVVM 377
>gi|46671|emb|CAA32926.1| RNA polymerase subunit C (AA 1-392) [Sulfolobus acidocaldarius]
Length = 392
Score = 119 bits (297), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 5/160 (3%)
Query: 1515 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1574
+ KR I+ + G+ ++++ TDG++L +++ VD + +N+I E+ +VLG+EA
Sbjct: 231 SQGYKRAIVQKKGD-----EYVIITDGSNLEGIMNVTGVDINKIQTNNIHEVEEVLGMEA 285
Query: 1575 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1634
R+ + +E+ VL+ GL V+ RH+ L+ D+MT G + I RHG+ + + L R +FE
Sbjct: 286 ARELISREIKKVLEEQGLDVDMRHIVLVSDIMTRTGDIRQIGRHGVTGEKSSVLARAAFE 345
Query: 1635 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
TV L+DAAA E + +GV ENII+GQ R+GTG +L
Sbjct: 346 VTVKHLLDAAARGEREEFKGVIENIIIGQPIRLGTGIVEL 385
>gi|118346269|ref|XP_977135.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila]
gi|89288380|gb|EAR86368.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena thermophila
SB210]
Length = 1418
Score = 119 bits (297), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 85/141 (60%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G S +VL +VD T S DI E+ Q+LG+EA RK++ E+ ++ + L V+
Sbjct: 1251 LFVEGNSFKQVLQLDEVDFANTLSVDIFEVLQILGVEAARKTIINEITKTIKSHSLNVDR 1310
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RHL L+ DV+T+KG L TR GIN LM SFE+T ++L +AA D + GVS
Sbjct: 1311 RHLILVADVLTSKGRLHGSTRQGINSMKDSTLMLASFEKTTEILYNAALQGRKDTLEGVS 1370
Query: 1657 ENIIMGQLPRMGTGCFDLLLD 1677
E II+GQ MGTG F+LL
Sbjct: 1371 ERIIIGQNIPMGTGTFNLLYG 1391
>gi|452825408|gb|EME32405.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 1423
Score = 118 bits (296), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 103/182 (56%), Gaps = 17/182 (9%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI +I + +H Q D K + L +G+ L+ V++ V
Sbjct: 1230 LPHVVVQGISSIKRAVIH--QKDDK---------------SYQLLVEGSDLLSVMTTAGV 1272
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+ T SN + + +VLGIEA RK+V E+ + +G+ ++ RH+ALL DVM+ +G ++
Sbjct: 1273 EGTCTTSNHVIIVEKVLGIEAARKTVASEIQYTMASHGMSIDTRHVALLADVMSFRGEIL 1332
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR GI + T A+M SFE+TVD L DAA + D + GVSE +IMG +GTG F
Sbjct: 1333 GITRFGIGKMKTSAIMLASFEKTVDHLFDAALYKTQDDVVGVSECVIMGMPVPLGTGLFG 1392
Query: 1674 LL 1675
LL
Sbjct: 1393 LL 1394
>gi|320170274|gb|EFW47173.1| polymerase III polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1472
Score = 118 bits (296), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 1503 EAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1562
AIG V + + KR +I + K + L +GT+L+ V+ VD +RT SN
Sbjct: 1275 HAIGNVIVS--GISTVKRAVINQ----KTPGKYNLLVEGTNLLAVMGIEGVDWMRTKSNH 1328
Query: 1563 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
I E+ LGIEA R ++ E+ +Q +G+ ++ RHL LL D+MT+KG ++ ITR GI +
Sbjct: 1329 IMEMKDSLGIEAARSTIMNEIQYTMQSHGMSIDTRHLMLLADLMTSKGDVLGITRFGIAK 1388
Query: 1623 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
LM SFE+T D L DA+ + + D +RGVSE IIMG +GTG F LL
Sbjct: 1389 MKESVLMLASFEKTTDHLFDASLYGQTDSVRGVSECIIMGIPMTIGTGLFKLL 1441
>gi|195399319|ref|XP_002058268.1| GJ15583 [Drosophila virilis]
gi|194150692|gb|EDW66376.1| GJ15583 [Drosophila virilis]
Length = 295
Score = 118 bits (296), Expect = 3e-23, Method: Composition-based stats.
Identities = 59/136 (43%), Positives = 85/136 (62%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+G L +V++ V RT SN+ICEI+Q LGIEA R + E+ V++ +G+ V++RH+
Sbjct: 135 EGYGLREVIATYGVVGERTRSNNICEIYQTLGIEAARTIIMSEITDVMEGHGMSVDWRHI 194
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D + GVSE I
Sbjct: 195 MLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERI 254
Query: 1660 IMGQLPRMGTGCFDLL 1675
I+G +GTG F LL
Sbjct: 255 ILGMPAGIGTGIFKLL 270
>gi|281360912|ref|NP_001096987.2| CG17209 [Drosophila melanogaster]
gi|272506113|gb|ABW09418.2| CG17209 [Drosophila melanogaster]
Length = 1383
Score = 118 bits (295), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 87/147 (59%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+ L +G L V++ V RT SN+ICEI+Q LGIEA R + E+ V++ +G+
Sbjct: 1214 PTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGM 1273
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V++RH+ LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D +
Sbjct: 1274 SVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAI 1333
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAE 1679
GVSE II+G +GTG F LL E
Sbjct: 1334 NGVSERIILGMPACIGTGIFKLLQQHE 1360
>gi|294495211|ref|YP_003541704.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii DSM
5219]
gi|292666210|gb|ADE36059.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii DSM
5219]
Length = 385
Score = 118 bits (295), Expect = 3e-23, Method: Composition-based stats.
Identities = 70/180 (38%), Positives = 105/180 (58%), Gaps = 18/180 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A ++ +TL+GI+ I +V ++ E GE++ L T+G+ L KVL
Sbjct: 212 AKKINTITLKGIDGIKRV------------VVRKEDGEYR------LYTEGSELKKVLEI 253
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VDP RT +N+I EI++V GIEA R ++ KE L+ GL V+ RH+ L+ D+M+ G
Sbjct: 254 DGVDPTRTSTNNIGEIYEVFGIEAARNAIIKEATDTLREQGLEVDVRHIMLVADIMSCDG 313
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA E D + GV+ENII+GQ ++GTG
Sbjct: 314 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGLRGEVDELSGVTENIIVGQPIKLGTG 373
>gi|384871708|gb|AFI25034.1| FI19733p1 [Drosophila melanogaster]
Length = 1410
Score = 118 bits (295), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 87/147 (59%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+ L +G L V++ V RT SN+ICEI+Q LGIEA R + E+ V++ +G+
Sbjct: 1241 PTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGM 1300
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V++RH+ LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D +
Sbjct: 1301 SVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAI 1360
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAE 1679
GVSE II+G +GTG F LL E
Sbjct: 1361 NGVSERIILGMPACIGTGIFKLLQQHE 1387
>gi|162944844|gb|ABY20491.1| LD04803p [Drosophila melanogaster]
Length = 1410
Score = 118 bits (295), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 87/147 (59%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+ L +G L V++ V RT SN+ICEI+Q LGIEA R + E+ V++ +G+
Sbjct: 1241 PTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGM 1300
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V++RH+ LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D +
Sbjct: 1301 SVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAI 1360
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAE 1679
GVSE II+G +GTG F LL E
Sbjct: 1361 NGVSERIILGMPACIGTGIFKLLQQHE 1387
>gi|195355413|ref|XP_002044186.1| GM22579 [Drosophila sechellia]
gi|194129475|gb|EDW51518.1| GM22579 [Drosophila sechellia]
Length = 1369
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+G L V++ V RT SN+ICEI+Q LGIEA R + E+ V++ +G+ V++RH+
Sbjct: 1207 EGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHI 1266
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D + GVSE I
Sbjct: 1267 MLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERI 1326
Query: 1660 IMGQLPRMGTGCFDLL 1675
I+G +GTG F LL
Sbjct: 1327 ILGMPACIGTGIFKLL 1342
>gi|427798211|gb|JAA64557.1| Putative rna polymerase i large subunit, partial [Rhipicephalus
pulchellus]
Length = 1429
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 2/140 (1%)
Query: 1536 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1595
L+E DG L V++ V ++T SN+ E+ + LGIEA R ++ +E+ +Q +G+ V+
Sbjct: 1264 LVEGDG--LRDVIATYGVKGIKTSSNNTSEVEKTLGIEAARTTIIREIGVTMQNHGISVD 1321
Query: 1596 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGV 1655
RHL LL D+MT +G ++ ITRHG+ R ALM SFE+T D L DAA + + D + GV
Sbjct: 1322 RRHLMLLADLMTFRGEVLGITRHGLARMKESALMLASFEKTADHLFDAAYYGQTDEISGV 1381
Query: 1656 SENIIMGQLPRMGTGCFDLL 1675
SE+II+G +GTG FDL+
Sbjct: 1382 SESIILGVPMAIGTGFFDLV 1401
>gi|167043884|gb|ABZ08573.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG3E18]
Length = 1273
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 91/146 (62%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
DWL++T G++L KV+S + VD +N++ EI VLGIEA R S+ E+ + L+ GL
Sbjct: 1124 GDWLIQTTGSNLAKVISVKGVDKNNVRTNNVFEISTVLGIEAARTSLINELKSTLENQGL 1183
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V+ R+L L+ D+M KG+L I RHGI L R +FE TV + +AA E + +
Sbjct: 1184 EVDVRYLMLVADLMCHKGYLQQIGRHGIAGSKDSVLARAAFEITVPTIANAAKLGEIEEL 1243
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDA 1678
+G++EN+I+G L +G+G D+ + +
Sbjct: 1244 KGITENVIVGSLIPIGSGTVDIFMKS 1269
>gi|195566972|ref|XP_002107049.1| GD17239 [Drosophila simulans]
gi|194204446|gb|EDX18022.1| GD17239 [Drosophila simulans]
Length = 723
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+G L V++ V RT SN+ICEI+Q LGIEA R + E+ V++ +G+ V++RH+
Sbjct: 561 EGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHI 620
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D + GVSE I
Sbjct: 621 MLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERI 680
Query: 1660 IMGQLPRMGTGCFDLL 1675
I+G +GTG F LL
Sbjct: 681 ILGMPACIGTGIFKLL 696
>gi|427788425|gb|JAA59664.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1390
Score = 117 bits (294), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 2/140 (1%)
Query: 1536 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1595
L+E DG L V++ V ++T SN+ E+ + LGIEA R ++ +E+ +Q +G+ V+
Sbjct: 1225 LVEGDG--LRDVIATYGVKGIKTSSNNTSEVEKTLGIEAARTTIIREIGVTMQNHGISVD 1282
Query: 1596 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGV 1655
RHL LL D+MT +G ++ ITRHG+ R ALM SFE+T D L DAA + + D + GV
Sbjct: 1283 RRHLMLLADLMTFRGEVLGITRHGLARMKESALMLASFEKTADHLFDAAYYGQTDEISGV 1342
Query: 1656 SENIIMGQLPRMGTGCFDLL 1675
SE+II+G +GTG FDL+
Sbjct: 1343 SESIILGVPMAIGTGFFDLV 1362
>gi|336121470|ref|YP_004576245.1| DNA-directed RNA polymerase subunit A'' [Methanothermococcus
okinawensis IH1]
gi|334855991|gb|AEH06467.1| DNA-directed RNA polymerase, subunit A'' [Methanothermococcus
okinawensis IH1]
Length = 395
Score = 117 bits (294), Expect = 5e-23, Method: Composition-based stats.
Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 10/213 (4%)
Query: 1474 EDAVDKMEDDMFLRC-IEANMLSDM----TLQGI-EAIGKV-YMHLPQTDSKKRIIITES 1526
+D V+ ++ M L+ IE N+L + +L+ + + I KV +HL + R+II +
Sbjct: 154 DDVVESIKKKMKLKIDIEGNVLHLIIKTPSLKALRKRIPKVKTIHLKGVPNIPRVIIRKE 213
Query: 1527 GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTV 1586
+ +++L ++G++L +V VD RT +N+I EI VLGIEA R ++ E+N
Sbjct: 214 ---EGTEEYILYSEGSNLKEVFEIEGVDTTRTTTNNILEIQDVLGIEAARNAIIDEINAT 270
Query: 1587 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1646
L GL V+ RHL L+ D+MT G + I RHGI+ + L R +FEETV L AA
Sbjct: 271 LSQQGLTVDIRHLMLVADIMTVDGSVKPIGRHGISGEKASVLARAAFEETVKHLYAAAER 330
Query: 1647 AEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
AD + GV ENII+G+ MGTGC D+ +D E
Sbjct: 331 GYADKLNGVVENIIVGKPISMGTGCVDVYIDRE 363
>gi|410721845|ref|ZP_11361170.1| DNA-directed RNA polymerase, subunit A'''' [Methanobacterium sp.
Maddingley MBC34]
gi|410598194|gb|EKQ52780.1| DNA-directed RNA polymerase, subunit A'''' [Methanobacterium sp.
Maddingley MBC34]
Length = 383
Score = 117 bits (293), Expect = 6e-23, Method: Composition-based stats.
Identities = 89/287 (31%), Positives = 151/287 (52%), Gaps = 30/287 (10%)
Query: 1394 DKMEDDMFLRCIEANMLSDMTLQ-FIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANML 1452
D D+ F+R I AN + +T ++ N + + M + +++ + L E
Sbjct: 120 DHASDEEFIRTI-ANRIGKITFNDILKDFNVNYASMNMSVEIDEELVKEKRLDYTEVMAK 178
Query: 1453 SDMTLQFIRIMN---SDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVY 1509
+ + + I N S + K+ + + A+ ++ + A+ + D+ + GI+ IGKV
Sbjct: 179 IEKAFKSVEINNNLLSFEPKITESKHAIRELR-------LLADKVRDLQISGIKNIGKV- 230
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+I + G+ +W++ T+G++L VL VDPVRT +NDI E+ +V
Sbjct: 231 ------------VIRKEGQ-----EWVIHTEGSNLGAVLKMEGVDPVRTTTNDIHEVEKV 273
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LG+EA R S+ E T ++ GL V+ RH+ L+ D+MTA G + +I RHGI+ + L
Sbjct: 274 LGVEAARNSIIHEAQTTMEEQGLTVDVRHIMLVADMMTADGIVKSIGRHGISGEKASVLA 333
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
R SFEET L+ A+ E D + G+ ENII+GQ +GTG +++
Sbjct: 334 RASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTGSVGVIM 380
>gi|167044137|gb|ABZ08820.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG5C13]
Length = 1268
Score = 117 bits (293), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 89/144 (61%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
DWL++T G++L KV+S + VD +N++ EI VLGIEA R S+ E+ L+ GL
Sbjct: 1119 GDWLIQTTGSNLAKVISVKGVDRNNVRTNNVFEISTVLGIEAARTSLINELKATLENQGL 1178
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V+ R+L L+ D+M KG+L I RHGI L R +FE TV + +AA E + +
Sbjct: 1179 EVDVRYLMLVADLMCHKGYLQQIGRHGIAGSKDSVLARAAFEITVPTIANAAKLGEVEKL 1238
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLL 1676
+G++EN+I+G L +G+G D+ +
Sbjct: 1239 KGITENVIVGSLIPIGSGTVDIFM 1262
>gi|242015075|ref|XP_002428200.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
humanus corporis]
gi|212512752|gb|EEB15462.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
humanus corporis]
Length = 1364
Score = 117 bits (293), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 104/181 (57%), Gaps = 14/181 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L ++ ++G+ A+ + +H DSK + L +G +L +V++ V
Sbjct: 1195 LPNIVIKGLSAVNRAVIH--HDDSK------------GGTKYKLFVEGYNLGEVMATNGV 1240
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+I E+F LGIEA R+++ E+ V++ +G+ ++ RH+ LL D+MT++G ++
Sbjct: 1241 LGTKTTSNNIFEVFTYLGIEAARQTIISEIKMVMENHGMSIDRRHIMLLADLMTSRGEVL 1300
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITRHG+ + L SFE T D L DAA + + D + GVSE+IIMG +GTG F
Sbjct: 1301 GITRHGLVKMKESVLNLASFERTADHLFDAAYYGQTDAITGVSESIIMGLPVSVGTGLFK 1360
Query: 1674 L 1674
L
Sbjct: 1361 L 1361
>gi|88601372|ref|YP_501550.1| DNA-directed RNA polymerase, subunit A'' [Methanospirillum hungatei
JF-1]
gi|88186834|gb|ABD39831.1| DNA-directed RNA polymerase, subunit A' [Methanospirillum hungatei
JF-1]
Length = 653
Score = 117 bits (292), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 7/158 (4%)
Query: 1520 RIII-TESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
R+++ ESGE+ +L T+G++L V + R VD RT +N+I EI QVLG+EA R +
Sbjct: 498 RVVVRKESGEY------ILYTEGSNLKDVFAIRGVDTTRTRTNNINEISQVLGVEAARNA 551
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ E L G+ V+ RH+ L+ D+M +G + I RHGI + L R +FE TV+
Sbjct: 552 IINEALATLSEQGIMVDVRHIMLVADMMCMEGEVKQIGRHGIAGEKESVLSRAAFEVTVN 611
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAA EAD + GV+EN+I+GQ ++GTG L++
Sbjct: 612 HLLDAAVAHEADILCGVTENVIVGQPIQLGTGDVKLVV 649
>gi|195432649|ref|XP_002064329.1| GK20105 [Drosophila willistoni]
gi|194160414|gb|EDW75315.1| GK20105 [Drosophila willistoni]
Length = 1381
Score = 117 bits (292), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 87/145 (60%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G L +V++ + RT SN+ICE+FQ LGIEA R + E+ V++ +G+ V
Sbjct: 1216 YKLCIEGYGLREVIATYGIIGKRTRSNNICEVFQTLGIEAARTIIMSEITDVMEGHGMSV 1275
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D + G
Sbjct: 1276 DSRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAVNG 1335
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSE II+G +GTG F LL E
Sbjct: 1336 VSERIILGMPAGIGTGIFKLLQHHE 1360
>gi|386001094|ref|YP_005919393.1| DNA-directed RNA polymerase subunit A'' [Methanosaeta harundinacea
6Ac]
gi|312183605|gb|ADQ42372.1| DNA-directed RNA polymerase subunit A'' [Methanosaeta harundinacea
6Ac]
gi|357209150|gb|AET63770.1| DNA-directed RNA polymerase subunit A'' [Methanosaeta harundinacea
6Ac]
Length = 378
Score = 117 bits (292), Expect = 8e-23, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 18/177 (10%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++L+GIE I KR++I + G+ +++L T+G++L V+ + V
Sbjct: 212 IKTISLKGIEGI-------------KRVVIRKEGD-----EYVLYTEGSALKDVIQFKGV 253
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
DP RT +N+I EI VLGIEA R ++ E L+ GL V+ RH+ L+ D+MT G +
Sbjct: 254 DPTRTKTNNITEIGDVLGIEAARNAIINEATDTLREQGLSVDVRHIMLVADIMTCDGEVK 313
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
I RHG++ + L R +FE TV+ ++DAA + D +RGV+EN+I+GQ ++GTG
Sbjct: 314 QIGRHGVSGEKASVLARAAFEVTVNHILDAAVRGDVDDLRGVTENVIVGQPIQLGTG 370
>gi|288931145|ref|YP_003435205.1| DNA-directed RNA polymerase, subunit A'' [Ferroglobus placidus DSM
10642]
gi|288893393|gb|ADC64930.1| DNA-directed RNA polymerase, subunit A'' [Ferroglobus placidus DSM
10642]
Length = 376
Score = 117 bits (292), Expect = 8e-23, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 102/158 (64%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR+II + G+ +++L T+G++L KV+ + VD RT +N+I EI++VLGIEA R +
Sbjct: 218 KRVIIRKEGD-----EYVLYTEGSNLKKVMKVKGVDFTRTITNNIYEIYEVLGIEAARNA 272
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
V E L+ GL V+ RH+ L+ D MTA G L I RHG+ + L R +FE TV+
Sbjct: 273 VINEALATLEEQGLEVDVRHIMLVADAMTADGELKQIGRHGVAGEKQSILARAAFEMTVN 332
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L++A+ E D + G++ENII+GQ ++GTG +L+L
Sbjct: 333 NLLEASVRGEVDRLNGITENIIVGQPIKLGTGDVELVL 370
>gi|448303810|ref|ZP_21493756.1| DNA-directed RNA polymerase subunit A'' [Natronorubrum sulfidifaciens
JCM 14089]
gi|445592437|gb|ELY46624.1| DNA-directed RNA polymerase subunit A'' [Natronorubrum sulfidifaciens
JCM 14089]
Length = 399
Score = 116 bits (291), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 15/182 (8%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+T +GIE I +V + + E GE +++L T+G++ L V
Sbjct: 217 LRDITFKGIEDISRVVIRREEL---------EDGE-----EFVLYTEGSAFGDALEIEGV 262
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT N+I EI + LGIEA R+++ +E N L GL VN RHL L+ D+MT +G +
Sbjct: 263 DASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTNRGEI 322
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L++AA H E D + GV+EN+I+G+ ++GTG
Sbjct: 323 ESIGRHGISGSKESVLARAAFEVTVNHLLNAAIHGEVDDLDGVTENVIVGKPIKLGTGDV 382
Query: 1673 DL 1674
DL
Sbjct: 383 DL 384
>gi|18312087|ref|NP_558754.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum aerophilum str.
IM2]
gi|20978702|sp|Q8ZYQ7.1|RPOA2_PYRAE RecName: Full=DNA-directed RNA polymerase subunit A''
gi|18159517|gb|AAL62936.1| DNA-directed RNA polymerase subunit A'' (rpoA2) [Pyrobaculum
aerophilum str. IM2]
Length = 379
Score = 116 bits (291), Expect = 1e-22, Method: Composition-based stats.
Identities = 74/195 (37%), Positives = 109/195 (55%), Gaps = 17/195 (8%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
D + +R I+ +L + + GI+ + KV + Q DSK +W + T+G
Sbjct: 200 DILKIRKIKDKILQ-IKISGIKGVRKVVL---QYDSKND-------------EWYIVTEG 242
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
T+L VL +VDP RT+SND+ E+ +VLGIEA R V +E+ VL+ GL V+ RH+ L
Sbjct: 243 TNLEAVLQLEEVDPTRTYSNDLHEVEEVLGIEATRALVAQEIKRVLEEQGLDVDIRHMYL 302
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
+ D MT G L I RHG+ L R +FE TV L++A+ E + +GV E+II
Sbjct: 303 VADAMTWSGRLRPIGRHGVVGSKESPLARAAFEVTVKTLIEASVRGEDELFKGVVESIIA 362
Query: 1662 GQLPRMGTGCFDLLL 1676
G+ +GTG LL+
Sbjct: 363 GKYVPIGTGIVRLLM 377
>gi|384491454|gb|EIE82650.1| hypothetical protein RO3G_07355 [Rhizopus delemar RA 99-880]
Length = 364
Score = 116 bits (290), Expect = 1e-22, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 91/147 (61%), Gaps = 17/147 (11%)
Query: 1606 MTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLP 1665
MT +GHLMAITRHGINR +TGALMRCSFEETV++L++AAA E D +GV+EN+++GQ+
Sbjct: 1 MTNRGHLMAITRHGINRAETGALMRCSFEETVEILLEAAAVGELDDCKGVTENVLLGQMA 60
Query: 1666 RMGTGCFDLLLDAEKCKDGIEIP------LATGMMGGPAGMFFGSAATPSSMIHNP-LQT 1718
+GTG FD++LD + + +P L G+ G AG ATP P + T
Sbjct: 61 PLGTGEFDIVLDEDLLQ---TVPQDHRQNLQMGVTGDVAGF-----ATPGPGYMTPSMAT 112
Query: 1719 PHNTSLTNATHQSRDKAFAPSELFLSP 1745
P++T + S+ +PSE SP
Sbjct: 113 PYDTRSPDWVDFSQPS--SPSEPMFSP 137
>gi|195048078|ref|XP_001992466.1| GH24768 [Drosophila grimshawi]
gi|193893307|gb|EDV92173.1| GH24768 [Drosophila grimshawi]
Length = 1303
Score = 116 bits (290), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 85/140 (60%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+G L V++ V +T SN+ICEI+Q LGIEA R + E+ V++ +G+ V++RH+
Sbjct: 1143 EGYGLRDVIATYGVIGEKTRSNNICEIYQTLGIEAARTVIMSEITDVMEGHGMSVDWRHI 1202
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
LL MTA+G ++ ITRHG+ + SFE+T D L DAA + + D + GVSE I
Sbjct: 1203 MLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQMDAINGVSERI 1262
Query: 1660 IMGQLPRMGTGCFDLLLDAE 1679
I+G +GTG F LL E
Sbjct: 1263 ILGMPAGIGTGIFKLLQHHE 1282
>gi|340503712|gb|EGR30247.1| hypothetical protein IMG5_137010 [Ichthyophthirius multifiliis]
Length = 1464
Score = 116 bits (290), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 86/141 (60%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G +L ++L VD T + DI E+F+VLGIEA RK++ E+ ++ + L V+
Sbjct: 1297 LFVEGNALKQILMLEKVDFSSTSTVDIYEVFEVLGIEAARKTIINEITKTIKSHSLNVDT 1356
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RHL L+ DV+T+KG L TR GIN LM SFE+T ++L +AA D + GVS
Sbjct: 1357 RHLVLVADVLTSKGRLYGSTRQGINFMKDSTLMLASFEKTTEILYNAALQGRKDLLEGVS 1416
Query: 1657 ENIIMGQLPRMGTGCFDLLLD 1677
E II+GQ MGTG F++L
Sbjct: 1417 ERIIIGQNIPMGTGTFNVLYG 1437
>gi|268323373|emb|CBH36961.1| probable DNA-directed RNA polymerase subunit A'' [uncultured
archaeon]
Length = 445
Score = 116 bits (290), Expect = 1e-22, Method: Composition-based stats.
Identities = 64/142 (45%), Positives = 92/142 (64%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+++L T+G++L KVL VD RT +N+I EI VLGIEA R ++ +EM + L GL
Sbjct: 300 GEYVLYTEGSALKKVLKVEGVDSRRTTTNNINEISDVLGIEAARNAIIEEMASTLDEQGL 359
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V+ RH+ L+ D MT G + I RHGI + L R +FE TVD L++AA H E D +
Sbjct: 360 DVDPRHITLIADTMTMDGEVKQIGRHGIAGEKASVLSRAAFEVTVDNLLEAAMHGETDAL 419
Query: 1653 RGVSENIIMGQLPRMGTGCFDL 1674
+GV+EN+I+GQ ++GTG +L
Sbjct: 420 KGVTENVIVGQPIKLGTGAIEL 441
>gi|145359470|ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
Length = 1376
Score = 115 bits (289), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 17/188 (9%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITE----SGEFKAIADWLLETDGTSLMKV 1547
N+L ++ + GI+ + +R+++ E S + W L +GT+L+ V
Sbjct: 1184 NVLPNIIVNGIKTV-------------ERVVVAEDMDKSKQIDGKTKWKLFVEGTNLLAV 1230
Query: 1548 LSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMT 1607
+ ++ T SN++ E+ + LGIEA R ++ E+ TV+ +G+ ++ RH+ LL DVMT
Sbjct: 1231 MGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMT 1290
Query: 1608 AKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRM 1667
+G ++ I R GI + D LM+ SFE T D L AAA + D + GV+E +IMG ++
Sbjct: 1291 YRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKL 1350
Query: 1668 GTGCFDLL 1675
GTG +L
Sbjct: 1351 GTGILKVL 1358
>gi|422295500|gb|EKU22799.1| DNA-directed RNA polymerase subunit A' [Nannochloropsis gaditana
CCMP526]
Length = 620
Score = 115 bits (289), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 82/141 (58%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+G L V+ VD + SN I E+ +VLGIEA R V E+ ++Q YG+ ++ RH
Sbjct: 465 EGYGLADVMGTPGVDGRQAKSNHIIEVERVLGIEAARAVVGTEIENIMQAYGIRIDTRHR 524
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
LL DVMT KG ++ ITR G+ + LM SFE+T D L DAA H D + GVSE I
Sbjct: 525 MLLSDVMTFKGEVLGITRFGVAKMRESVLMLASFEKTTDHLFDAAVHGRTDAIVGVSECI 584
Query: 1660 IMGQLPRMGTGCFDLLLDAEK 1680
IMG +GTG F LL D K
Sbjct: 585 IMGIPIPLGTGLFKLLHDVPK 605
>gi|167042230|gb|ABZ06962.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_ANIW93I24]
Length = 1264
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 90/150 (60%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
DWL++T G++L KV+ + VD +N++ EI VLGIEA R S+ E+ L+ GL
Sbjct: 1115 GDWLIQTTGSNLAKVIVVKGVDKNNVRTNNVFEISTVLGIEAARTSLINELKATLENQGL 1174
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V+ R+L L+ D+M KG+L I RHGI L R +FE TV + +AA E + +
Sbjct: 1175 EVDVRYLMLVADLMCHKGYLQQIGRHGIAGSKDSVLARAAFEITVPTIANAAKLGEIEEL 1234
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1682
+G++EN+I+G L +G+G D+ + + K
Sbjct: 1235 KGITENVIVGSLIPIGSGTVDIFMKSNTKK 1264
>gi|8777343|dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
Length = 1383
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 17/188 (9%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITE----SGEFKAIADWLLETDGTSLMKV 1547
N+L ++ + GI+ + +R+++ E S + W L +GT+L+ V
Sbjct: 1191 NVLPNIIVNGIKTV-------------ERVVVAEDMDKSKQIDGKTKWKLFVEGTNLLAV 1237
Query: 1548 LSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMT 1607
+ ++ T SN++ E+ + LGIEA R ++ E+ TV+ +G+ ++ RH+ LL DVMT
Sbjct: 1238 MGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMT 1297
Query: 1608 AKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRM 1667
+G ++ I R GI + D LM+ SFE T D L AAA + D + GV+E +IMG ++
Sbjct: 1298 YRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKL 1357
Query: 1668 GTGCFDLL 1675
GTG +L
Sbjct: 1358 GTGILKVL 1365
>gi|407043155|gb|EKE41776.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
nuttalli P19]
Length = 1379
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 101/189 (53%), Gaps = 18/189 (9%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N L ++ + GIE G+ +I G F+ L +G+ L+KV+
Sbjct: 1197 NQLLEVIVCGIENTGRA------------VINKNKGSFE------LLVEGSELLKVMGTP 1238
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
V T SN I + +VLGIEA R ++ E+ V+ YGL ++ RHL LL D+MT KG
Sbjct: 1239 GVIGEETTSNHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGV 1298
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
++ ITR+GI++ SFE T D L DAA H+ D ++GVSE+II+G +GTG
Sbjct: 1299 ILGITRYGISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGL 1358
Query: 1672 FDLLLDAEK 1680
+L D K
Sbjct: 1359 MQILYDPPK 1367
>gi|67476290|ref|XP_653748.1| DNA-directed RNA polymerase III largest subunit [Entamoeba
histolytica HM-1:IMSS]
gi|56470729|gb|EAL48362.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449705808|gb|EMD45780.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
histolytica KU27]
Length = 1379
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 101/189 (53%), Gaps = 18/189 (9%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N L ++ + GIE G+ +I G F+ L +G+ L+KV+
Sbjct: 1197 NQLLEVIVCGIENTGRA------------VINKNKGSFE------LLVEGSELLKVMGTP 1238
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
V T SN I + +VLGIEA R ++ E+ V+ YGL ++ RHL LL D+MT KG
Sbjct: 1239 GVIGEETTSNHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGV 1298
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
++ ITR+GI++ SFE T D L DAA H+ D ++GVSE+II+G +GTG
Sbjct: 1299 ILGITRYGISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGL 1358
Query: 1672 FDLLLDAEK 1680
+L D K
Sbjct: 1359 MQILYDPPK 1367
>gi|321473720|gb|EFX84687.1| hypothetical protein DAPPUDRAFT_222950 [Daphnia pulex]
Length = 1387
Score = 115 bits (288), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G ++ +V++ V T SN+I E++ LGIEA + ++ KE+ ++ +G+ V
Sbjct: 1221 YYLLVEGDNMREVMATYGVKGTSTTSNNILEVYTTLGIEAAKATIAKEIQYTMESHGMSV 1280
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ALL D+M+ +G ++ ITRHG+ + LM SFE T D L DA+ + + D + G
Sbjct: 1281 DRRHVALLSDLMSCRGEILGITRHGLAKMKESVLMLASFERTSDHLFDASYYGQEDEITG 1340
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
VSE IIMG +GTG F LL K G +P T
Sbjct: 1341 VSECIIMGIPMSIGTGAFKLLY-----KTGKSVPPKT 1372
>gi|332024635|gb|EGI64832.1| DNA-directed RNA polymerase III subunit RPC1 [Acromyrmex echinatior]
Length = 1988
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 105/182 (57%), Gaps = 14/182 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ ++G+ +I +V +H SK + L +G + +V++ R +
Sbjct: 1800 IPNVIIKGLPSINRVVVHNENLGSKSKFT--------------LFVEGDNFREVMATRGI 1845
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+F+ LGIEA R ++ E+ +V++ +G+ ++ RHL LL D+MT++G ++
Sbjct: 1846 LGEKTKSNNTIEVFKTLGIEAARTTIMSEIKSVMENHGISIDCRHLMLLADLMTSRGEVL 1905
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + L SFE+T D L DAA + + D + GVSE+IIMG +GTG F
Sbjct: 1906 GITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQKDVISGVSESIIMGIPVPLGTGIFK 1965
Query: 1674 LL 1675
LL
Sbjct: 1966 LL 1967
>gi|50346874|gb|AAT75144.1| RNA polymerase 2 [Oscheius myriophila]
Length = 70
Score = 115 bits (287), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 1547 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1606
VLSE ++DPVRT SNDICEIF+VLGIEAVRKS+E+EMN V+ F G YVNYRHLALLCDVM
Sbjct: 1 VLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNYRHLALLCDVM 60
Query: 1607 TAKGHLMAIT 1616
TAKGHLMAIT
Sbjct: 61 TAKGHLMAIT 70
>gi|321451320|gb|EFX63013.1| hypothetical protein DAPPUDRAFT_67470 [Daphnia pulex]
Length = 1391
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 5/155 (3%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G ++ +V++ V T SN+I E+F LGIEA + + KE+ ++ +G+ V+
Sbjct: 1227 LLVEGNNMREVMATYGVQGSSTTSNNILEVFSTLGIEAAKSMIAKEIKFTMESHGMSVDR 1286
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ALL D+M+ +G ++ ITRHG+ + LM SFE T D L DAA + + D + GVS
Sbjct: 1287 RHVALLSDLMSCRGEILGITRHGLAKMKQSVLMLASFESTSDHLFDAAYYGQEDEVTGVS 1346
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLAT 1691
E IIMG +GTG F LL K G +P T
Sbjct: 1347 ECIIMGVPMAIGTGAFKLLY-----KTGKSVPPKT 1376
>gi|76800713|ref|YP_325721.1| DNA-directed RNA polymerase subunit A [Natronomonas pharaonis DSM
2160]
gi|76556578|emb|CAI48149.1| DNA-directed RNA polymerase subunit A'' (subunit C)
(intein-containing) [Natronomonas pharaonis DSM 2160]
Length = 894
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 112/189 (59%), Gaps = 17/189 (8%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L ++ +GIE I +V + +T E GE +++L T+G+ L +VL V
Sbjct: 713 LREIVFKGIEEINRVVIRKEET---------EQGE-----EFVLYTEGSDLKEVLDIEGV 758
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSV-EKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGH 1611
D RT N+I EI LGIEA R+++ E+ MNT L+ GL VN RHL L+ D+MT G
Sbjct: 759 DASRTTCNNIHEIHNNLGIEAAREAIIEETMNT-LEEQGLDDVNIRHLMLVADIMTNNGE 817
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
+ +I RHGI+ L R +FE TV+ L+DAA H E D + GV+EN+I+G+ ++GTG
Sbjct: 818 IESIGRHGISGNKDSVLARAAFEVTVNHLLDAAIHGEVDDLDGVTENVIVGKPIKLGTGD 877
Query: 1672 FDLLLDAEK 1680
DL + A +
Sbjct: 878 VDLRMGATR 886
>gi|38232321|gb|AAR14996.1| RNA polymerase II largest subunit [Mesocyclops edax]
Length = 302
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 58/67 (86%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN+D EE+ DKMEDDMFLRC
Sbjct: 236 MEQISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNADADAKDGEEEQADKMEDDMFLRC 295
Query: 61 IEANMLS 67
IEANMLS
Sbjct: 296 IEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 151
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 193
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 235
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 277
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 319
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 361
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 403
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 445
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 487
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 529
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 571
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 613
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 655
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 697
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 739
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 781
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 823
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 865
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 907
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 949
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 991
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1033
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1075
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1117
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1159
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1201
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1243
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1285
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1327
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1369
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1411
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1418 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1453
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1495
IRIMN+D EE+ DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNADADAKDGEEEQADKMEDDMFLRCIEANMLS 302
>gi|448115320|ref|XP_004202788.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359383656|emb|CCE79572.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 18/197 (9%)
Query: 1480 MEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLE 1538
M + +F R + L + + G+ I + +++ + D KK +++
Sbjct: 1248 MNNSLFFRAQVLKRALPQICVNGLSDISRAVINI-RDDGKKELLV--------------- 1291
Query: 1539 TDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRH 1598
+G L V+S V +T +N + EIFQVLGIEA R S+ KE++ + +G+ V+ RH
Sbjct: 1292 -EGYGLKNVMSTDGVVGTKTTTNHVLEIFQVLGIEAARASIIKEIDYTMTNHGMSVDPRH 1350
Query: 1599 LALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSEN 1658
+ LL DVMT KG ++ ITR G+++ L SFE+T D L DA+ + + D + GVSE
Sbjct: 1351 IQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKEDKIEGVSEC 1410
Query: 1659 IIMGQLPRMGTGCFDLL 1675
II+GQ +GTG F L+
Sbjct: 1411 IILGQTMNIGTGAFKLV 1427
>gi|391343926|ref|XP_003746256.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Metaseiulus occidentalis]
Length = 1386
Score = 115 bits (287), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 1530 KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQF 1589
K + L+E++ L+ VLS V P + N+I E+ +VLGIEA R + EM ++
Sbjct: 1217 KPVYKLLVESN--RLLDVLSTYGVRPEKCRCNNILEVSEVLGIEAARHQIITEMRETMEG 1274
Query: 1590 YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEA 1649
+G+ ++ RHL LL D+MT G ++ ITRHG+ + ALM SFE+T D L DAA + +
Sbjct: 1275 HGISIDMRHLMLLADLMTRTGEVVGITRHGLAKMKESALMLASFEKTADHLFDAAYYGQR 1334
Query: 1650 DPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
D + GVSE II+G+ + GTG F+L+ D
Sbjct: 1335 DDVTGVSECIILGKPMKQGTGFFNLVYD 1362
>gi|167044066|gb|ABZ08751.1| putative RNA polymerase Rpb1, domain 2, partial [uncultured marine
crenarchaeote HF4000_APKG4H17]
Length = 993
Score = 114 bits (286), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+WL++T G++L +VLS + VD +N++ EI VLGIEA R S+ E+ L+ GL
Sbjct: 844 GEWLIQTTGSNLAEVLSVKGVDRNNVRTNNVFEISTVLGIEAARNSLINELKGTLENQGL 903
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V+ R+L L+ D+M KGHL I RHGI L R +FE TV + +AA E + +
Sbjct: 904 EVDIRYLMLVADLMCHKGHLQQIGRHGIAGTKDSVLARAAFEITVPTIANAAKLGEIEEL 963
Query: 1653 RGVSENIIMG-QLPRMGTGCFDLLLDAEKCK 1682
+G++EN+I+G Q+P +G+G D+ + + K
Sbjct: 964 KGITENVIVGSQIP-IGSGTVDIFMKTKTKK 993
>gi|167385199|ref|XP_001737245.1| DNA-directed RNA polymerase III subunit RPC1 [Entamoeba dispar
SAW760]
gi|165900031|gb|EDR26493.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
dispar SAW760]
Length = 1379
Score = 114 bits (286), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 18/189 (9%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N L ++ + GIE G R +I ++ K + + L+E G+ L+KV+
Sbjct: 1197 NQLLEVIVCGIENTG-------------RAVINKN---KGLFELLVE--GSELLKVMGTP 1238
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
V T SN I + +VLGIEA R ++ E+ V+ YGL ++ RHL LL D+MT KG
Sbjct: 1239 GVIGEETTSNHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGV 1298
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
++ ITR+GI++ SFE T D L DAA H+ D ++GVSE+II+G +GTG
Sbjct: 1299 ILGITRYGISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGL 1358
Query: 1672 FDLLLDAEK 1680
+L D K
Sbjct: 1359 MQILYDPPK 1367
>gi|298674726|ref|YP_003726476.1| DNA-directed RNA polymerase subunit A'' [Methanohalobium evestigatum
Z-7303]
gi|298287714|gb|ADI73680.1| DNA-directed RNA polymerase, subunit A'' [Methanohalobium evestigatum
Z-7303]
Length = 388
Score = 114 bits (286), Expect = 4e-22, Method: Composition-based stats.
Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 18/180 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++TL+GIE I KR++I + + ++ L T+G+ L +VL
Sbjct: 212 AKNIHNVTLKGIEGI-------------KRVVIRKDSD-----EYTLYTEGSELNEVLKI 253
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT++N+I EI++V GIEA R ++ KE L GL V+ RH+ L+ D+MT G
Sbjct: 254 EGVDVTRTYTNNIAEIYEVFGIEAARNALVKEAMDTLSEQGLNVDIRHIMLVADIMTCDG 313
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA + D + GV+ENII+GQ ++GTG
Sbjct: 314 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGIRGDVDELNGVTENIIIGQPIKLGTG 373
>gi|20978714|sp|Q979F5.1|RPOA2_THEVO RecName: Full=DNA-directed RNA polymerase subunit A''
gi|14325444|dbj|BAB60348.1| DNA-directed RNA polymerase A'' [Thermoplasma volcanium GSS1]
Length = 508
Score = 114 bits (286), Expect = 4e-22, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 87/141 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W++ T G++L VL +VDP RT++NDI EI VLGIEA R ++ E LQ GL V
Sbjct: 359 WVIYTQGSNLKDVLEVDEVDPTRTYTNDIVEIATVLGIEAARNAILNEAQRTLQEQGLNV 418
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RHL L+ D+MT G + A+ R GI+ + + L R +FE T L+ A E D + G
Sbjct: 419 DVRHLMLVADMMTFSGSVRAVGRTGISGRKSSVLARAAFEITTKHLLRAGIMGEVDKLAG 478
Query: 1655 VSENIIMGQLPRMGTGCFDLL 1675
V+ENII+GQ +GTG D++
Sbjct: 479 VAENIIVGQPITLGTGAVDII 499
>gi|355570730|ref|ZP_09042000.1| DNA-directed RNA polymerase, subunit A'' [Methanolinea tarda NOBI-1]
gi|354826012|gb|EHF10228.1| DNA-directed RNA polymerase, subunit A'' [Methanolinea tarda NOBI-1]
Length = 391
Score = 114 bits (286), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 109/194 (56%), Gaps = 20/194 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++ +QGI+ I +V ++ ESGE+ +L T+G++L V
Sbjct: 216 AEHVRNVIVQGIDDIERV------------VVRKESGEY------ILYTEGSNLKDVFEV 257
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI QVLGIEA R ++ E + L G+ V+ RH+ L+ D+M G
Sbjct: 258 EGVDTTRTRTNNISEIAQVLGIEAARNAIIHEALSTLSEQGILVDVRHIMLVADMMCMDG 317
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI + L R +FE TV+ L+DAA E D + GV+EN+I+GQ ++GTG
Sbjct: 318 EVKQIGRHGIAGEKESVLSRAAFEVTVNHLLDAAIANEVDELSGVTENVIVGQPIQLGTG 377
Query: 1671 CFDLLLDAEKCKDG 1684
D+ L A+ K G
Sbjct: 378 --DVKLIAKPLKLG 389
>gi|13542011|ref|NP_111699.1| DNA-directed RNA polymerase subunit A'' [Thermoplasma volcanium GSS1]
Length = 513
Score = 114 bits (286), Expect = 4e-22, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 87/141 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W++ T G++L VL +VDP RT++NDI EI VLGIEA R ++ E LQ GL V
Sbjct: 364 WVIYTQGSNLKDVLEVDEVDPTRTYTNDIVEIATVLGIEAARNAILNEAQRTLQEQGLNV 423
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RHL L+ D+MT G + A+ R GI+ + + L R +FE T L+ A E D + G
Sbjct: 424 DVRHLMLVADMMTFSGSVRAVGRTGISGRKSSVLARAAFEITTKHLLRAGIMGEVDKLAG 483
Query: 1655 VSENIIMGQLPRMGTGCFDLL 1675
V+ENII+GQ +GTG D++
Sbjct: 484 VAENIIVGQPITLGTGAVDII 504
>gi|358060144|dbj|GAA94203.1| hypothetical protein E5Q_00851 [Mixia osmundae IAM 14324]
Length = 1436
Score = 114 bits (286), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 20/206 (9%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRI DD + A K+ D + C +L ++ ++G+ A + + + Q SK+
Sbjct: 1220 IRIYLPDDDGSESTSSAPHKL-DRLNTLC---RLLPNVVVKGVGACSRAVIQVKQGSSKE 1275
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ ++ E G L +V++ VD R SN I E+ +VLGIEA R+++
Sbjct: 1276 KHLLVE---------------GNGLREVMTTDGVDGRRVTSNHIMEVVKVLGIEAARQTI 1320
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+ + +GL V+ RHL LL DVMT KG ++ ITR G+ + LM SFE+T D
Sbjct: 1321 INEIGGTMGAHGLSVDPRHLGLLGDVMTCKGEVLGITRFGVAKLKDSTLMLASFEKTTDH 1380
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLP 1665
L DAA ++ D + G+SE+IIMG LP
Sbjct: 1381 LFDAAVYSRQDDIDGISESIIMG-LP 1405
>gi|424812809|ref|ZP_18238049.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Candidatus
Nanosalinarum sp. J07AB56]
gi|339757031|gb|EGQ40614.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Candidatus
Nanosalinarum sp. J07AB56]
Length = 368
Score = 114 bits (286), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 85/142 (59%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+W L T GTSL K + +VD RT SND+ E+ V+GIE +R+ + +E L+ G+
Sbjct: 219 GEWELRTAGTSLRKTMRIDEVDETRTISNDLFEVESVIGIEGLRQRIIEETKATLEEQGI 278
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
++ RH+ LL D+MT +G L TR+GI + L R ++EET L A+ H E D +
Sbjct: 279 GIDDRHIMLLADMMTKEGELNGCTRYGIVGEKDSILARSAYEETKKHLSQASLHGEVDDL 338
Query: 1653 RGVSENIIMGQLPRMGTGCFDL 1674
GV ENI++GQ +GTG DL
Sbjct: 339 EGVVENIVLGQSVPVGTGKVDL 360
>gi|548826|sp|Q03586.1|RPOA2_THEAC RecName: Full=DNA-directed RNA polymerase subunit A''
gi|48093|emb|CAA48282.1| DNA-directed RNA polymerase [Thermoplasma acidophilum]
Length = 508
Score = 114 bits (285), Expect = 5e-22, Method: Composition-based stats.
Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 17/207 (8%)
Query: 1470 MQDEEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1528
M+D + K + + F + + + +T++GI I K+ I E E
Sbjct: 309 MEDSGQIIIKPQQESFKKLYLLQEQIKGLTIKGISGI------------KRAIARVEGKE 356
Query: 1529 FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQ 1588
+ W++ T G++L VL +VDP RT++NDI EI VLGIEA R ++ E LQ
Sbjct: 357 HR----WVIYTQGSNLKDVLEVDEVDPTRTYTNDIVEIANVLGIEAARNAILNEALRTLQ 412
Query: 1589 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1648
GL V+ RHL L+ D+MT G + A+ R GI+ + + L R +FE T L+ A E
Sbjct: 413 EQGLNVDVRHLMLVADMMTFSGSVRAVGRTGISGRKSSVLARAAFEITTKHLLRAGIMGE 472
Query: 1649 ADPMRGVSENIIMGQLPRMGTGCFDLL 1675
D + GV+ENII+GQ +GTG D++
Sbjct: 473 VDKLAGVAENIIVGQPITLGTGAVDII 499
>gi|110669267|ref|YP_659078.1| DNA-directed RNA polymerase subunit A'' (subunit C) [Haloquadratum
walsbyi DSM 16790]
gi|109627014|emb|CAJ53490.1| DNA-directed RNA polymerase subunit A'' (subunit C) [Haloquadratum
walsbyi DSM 16790]
Length = 637
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 13/182 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+ +G+E I +V + + D+++ T EF +L T+G++L VL V
Sbjct: 444 LRDIVFKGLEDISRVVIR--KEDNER----TNGEEF------VLYTEGSALGDVLPIEGV 491
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT SN+I E+ + LGIEA R+S+ E L+ GL VN RHL L+ D+MT +G +
Sbjct: 492 DASRTTSNNIHEVHRNLGIEAARESIINETMETLREQGLDDVNVRHLMLVADIMTNRGEI 551
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L+DAA H E D + GV EN+I+G+ +GTG
Sbjct: 552 ESIGRHGISGSKDSVLARAAFEVTVNHLLDAAVHGEEDDLEGVIENVIVGKPVAIGTGDV 611
Query: 1673 DL 1674
DL
Sbjct: 612 DL 613
>gi|344229980|gb|EGV61865.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
tenuis ATCC 10573]
Length = 1453
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 107/183 (58%), Gaps = 17/183 (9%)
Query: 1493 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
ML ++ ++G+ I + +++ + DSKK +++ +G L +V+S
Sbjct: 1260 MLPEICIKGLPNISRAVINI-RDDSKKELLV----------------EGYGLKEVMSTDG 1302
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
V +T +N + E+F+VLGIEA R S+ E++ + +G+ V+ RH+ LL DVMT KG +
Sbjct: 1303 VVGTKTTTNHVLEVFEVLGIEAARSSIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKGEV 1362
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+ ITR G+++ L SFE+T D L DAA + + D + GVSE II+GQ +GTG F
Sbjct: 1363 LGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKNDKVEGVSECIILGQTMSIGTGAF 1422
Query: 1673 DLL 1675
L+
Sbjct: 1423 KLV 1425
>gi|91092426|ref|XP_968165.1| PREDICTED: similar to AGAP004703-PA [Tribolium castaneum]
gi|270004743|gb|EFA01191.1| hypothetical protein TcasGA2_TC010518 [Tribolium castaneum]
Length = 1390
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 87/136 (63%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+G +L +V++ V +T SN+I E++ LGIEA R+++ E+ V++ +G+ V+YRH+
Sbjct: 1232 EGDNLREVIATYGVLGTKTVSNNIMEVYHTLGIEAARETIMSEIKMVMENHGMSVDYRHI 1291
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
LL MT G ++ ITR+G+++ L SFE+T D L DAA + + D + GVSENI
Sbjct: 1292 MLLAAQMTHTGEVLGITRYGLSKMKQSILNLASFEKTADHLFDAAYYGQVDKINGVSENI 1351
Query: 1660 IMGQLPRMGTGCFDLL 1675
IMG +GTG F LL
Sbjct: 1352 IMGMPAPIGTGIFKLL 1367
>gi|330833902|ref|YP_004408630.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera cuprina Ar-4]
gi|329566041|gb|AEB94146.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera cuprina Ar-4]
Length = 392
Score = 114 bits (285), Expect = 5e-22, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR I+ + GE ++++ TDG++L VL + VD R +N++ E+ VLGIEAVR+
Sbjct: 235 KRAIVQKRGE-----EYVIVTDGSNLEGVLGVKGVDVSRIETNNLHEVENVLGIEAVREL 289
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ KE+ VL+ GL V+ RH+ L+ D+MT G + I RHG+ + T L R +FE TV
Sbjct: 290 ITKEIKKVLEDQGLDVDIRHIELVSDIMTRTGEVKQIGRHGVTGEKTSVLARAAFEVTVK 349
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAAA + + +GV ENII+GQ ++GTG +LL+
Sbjct: 350 HLLDAAARGDMEEFKGVVENIIIGQPVKLGTGMVELLM 387
>gi|307166498|gb|EFN60583.1| DNA-directed RNA polymerase III subunit RPC1 [Camponotus floridanus]
Length = 1384
Score = 114 bits (285), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 105/182 (57%), Gaps = 14/182 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + ++G+ ++ +V +H ++ K + W L +G + +V++ V
Sbjct: 1179 LPKIVVKGMPSVSRVVVHDETSNGKTK--------------WKLFVEGDNFREVMATYGV 1224
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+F+ LGIEA R ++ E+ +V++ +G+ V+ RHL LL D+MT +G ++
Sbjct: 1225 HGEKTTSNNTLEVFKTLGIEAARTTIMAEIKSVMENHGISVDRRHLILLADLMTCRGEVL 1284
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+++ L SFE+T D L D+A + + D + GVSE+IIMG +GTG F
Sbjct: 1285 GITRQGLDKMKESVLNLASFEKTADHLFDSAYYGQRDAICGVSESIIMGIPIPVGTGMFK 1344
Query: 1674 LL 1675
LL
Sbjct: 1345 LL 1346
>gi|385804831|ref|YP_005841231.1| DNA-directed RNA polymerase subunit A'' (subunit C) [Haloquadratum
walsbyi C23]
gi|339730323|emb|CCC41652.1| DNA-directed RNA polymerase subunit A'' (subunit C) [Haloquadratum
walsbyi C23]
Length = 637
Score = 114 bits (285), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 13/182 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+ +G+E I +V + + D+++ T EF +L T+G++L VL V
Sbjct: 444 LRDIVFKGLEDISRVVIR--KEDNER----TNGEEF------VLYTEGSALGDVLPIEGV 491
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT SN+I E+ + LGIEA R+S+ E L+ GL VN RHL L+ D+MT +G +
Sbjct: 492 DASRTTSNNIHEVHRNLGIEAARESIINETMETLREQGLDDVNVRHLMLVADIMTNRGEI 551
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L+DAA H E D + GV EN+I+G+ +GTG
Sbjct: 552 ESIGRHGISGSKDSVLARAAFEVTVNHLLDAAVHGEEDDLEGVIENVIVGKPVAIGTGDV 611
Query: 1673 DL 1674
DL
Sbjct: 612 DL 613
>gi|16081521|ref|NP_393872.1| DNA-directed RNA polymerase subunit A'' [Thermoplasma acidophilum DSM
1728]
gi|10639564|emb|CAC11536.1| probable DNA-directed RNA polymerase, chain A [Thermoplasma
acidophilum]
Length = 511
Score = 114 bits (284), Expect = 6e-22, Method: Composition-based stats.
Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 17/207 (8%)
Query: 1470 MQDEEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1528
M+D + K + + F + + + +T++GI I K+ I E E
Sbjct: 312 MEDSGQIIIKPQQESFKKLYLLQEQIKGLTIKGISGI------------KRAIARVEGKE 359
Query: 1529 FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQ 1588
+ W++ T G++L VL +VDP RT++NDI EI VLGIEA R ++ E LQ
Sbjct: 360 HR----WVIYTQGSNLKDVLEVDEVDPTRTYTNDIVEIANVLGIEAARNAILNEALRTLQ 415
Query: 1589 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1648
GL V+ RHL L+ D+MT G + A+ R GI+ + + L R +FE T L+ A E
Sbjct: 416 EQGLNVDVRHLMLVADMMTFSGSVRAVGRTGISGRKSSVLARAAFEITTKHLLRAGIMGE 475
Query: 1649 ADPMRGVSENIIMGQLPRMGTGCFDLL 1675
D + GV+ENII+GQ +GTG D++
Sbjct: 476 VDKLAGVAENIIVGQPITLGTGAVDII 502
>gi|429962254|gb|ELA41798.1| hypothetical protein VICG_01150 [Vittaforma corneae ATCC 50505]
Length = 1442
Score = 114 bits (284), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 88/150 (58%)
Query: 1530 KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQF 1589
K++ ++ L +G L KVL+ V+ + T SNDI E+ + LGIEA R + KE+ +
Sbjct: 1292 KSVDEYELLVEGRCLGKVLNVPGVESLSTTSNDILEVEKTLGIEAARSLIMKEVEYTMGK 1351
Query: 1590 YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEA 1649
YG+ V++RH LL D M KG ++ ITR GI + T LM SFE+T D L +AA
Sbjct: 1352 YGIKVDHRHTMLLADTMAFKGEILGITRFGIGKMRTSTLMLASFEQTADYLFNAAIRGLD 1411
Query: 1650 DPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
+ +RGVSE+II+G +GTG L E
Sbjct: 1412 EYVRGVSESIILGIPISLGTGAMKLYWKTE 1441
>gi|119719202|ref|YP_919697.1| DNA-directed RNA polymerase, subunit A'' [Thermofilum pendens Hrk 5]
gi|119524322|gb|ABL77694.1| DNA-directed RNA polymerase, subunit A' [Thermofilum pendens Hrk 5]
Length = 403
Score = 114 bits (284), Expect = 7e-22, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 1525 ESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN 1584
E GE + ++++ T+G++L VL VDP RT +N+I EI++VLGIEA R ++ KE+
Sbjct: 241 EKGE---LVEYVILTEGSNLKAVLGIEGVDPRRTTTNNILEIYEVLGIEAARAAIIKEIK 297
Query: 1585 TVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA 1644
VL +GL V++RH+ ++ D MT G + + RHG+ + L R SFE TV L++AA
Sbjct: 298 KVLDEHGLDVDWRHIMMVADAMTYSGKVRQVGRHGVAGEKGSVLARASFEVTVKNLVEAA 357
Query: 1645 AHAEADPMRGVSENIIMGQLP-RMGTGCFDLLLDAE 1679
E D +RGV EN+I+G P +GTG L + E
Sbjct: 358 LRGELDELRGVIENVIIGSKPIPLGTGSVKLKMRYE 393
>gi|237842187|ref|XP_002370391.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
gondii ME49]
gi|211968055|gb|EEB03251.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
gondii ME49]
gi|221502846|gb|EEE28560.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
gondii VEG]
Length = 1746
Score = 114 bits (284), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 85/141 (60%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V+ + V ++ SN + E+ Q+LGIEA R + E+ + Y + ++
Sbjct: 1581 LAVEGYGLRDVMGTQGVKALQATSNHVMEVAQILGIEAARAVIISEIRKCMDAYSMDIDC 1640
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT +G ++ I R GI + LM SFEET + L +AA H ADP++GVS
Sbjct: 1641 RHMTLLGDVMTFRGEVLGINRFGIQKMRASTLMLASFEETNEHLFEAAVHHRADPVKGVS 1700
Query: 1657 ENIIMGQLPRMGTGCFDLLLD 1677
E IIMG+ +GTG FDLLL
Sbjct: 1701 ECIIMGKQVSLGTGSFDLLLS 1721
>gi|154417868|ref|XP_001581953.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
gi|121916185|gb|EAY20967.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
Length = 1657
Score = 114 bits (284), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 103/189 (54%), Gaps = 18/189 (9%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+ + G+ + +V+ + E+G FK L +G +KVL+ +
Sbjct: 1170 LPDVVVSGVPGVERVH------------VGKENGCFK------LFVEGNPFLKVLNTPGI 1211
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
DP RT SN + ++ +VLG+EA R + E+ V++ Y L ++ RHL LL D+MT +G ++
Sbjct: 1212 DPKRTVSNHVLDVEKVLGVEAARSVIISEITNVMKNYSLNIDRRHLMLLSDLMTIRGKVL 1271
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
+TRHG+ + +L SFE T + L +AA H + GVS ++I+G +G+G D
Sbjct: 1272 GVTRHGLAKTSVSSLKLASFETTQEHLFNAAFHNVDEVANGVSASVILGNFAPIGSGMID 1331
Query: 1674 LLLDAEKCK 1682
+L+ E K
Sbjct: 1332 VLVSDELLK 1340
>gi|221482258|gb|EEE20613.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
gondii GT1]
Length = 1747
Score = 114 bits (284), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 85/141 (60%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V+ + V ++ SN + E+ Q+LGIEA R + E+ + Y + ++
Sbjct: 1582 LAVEGYGLRDVMGTQGVKALQATSNHVMEVAQILGIEAARAVIISEIRKCMDAYSMDIDC 1641
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT +G ++ I R GI + LM SFEET + L +AA H ADP++GVS
Sbjct: 1642 RHMTLLGDVMTFRGEVLGINRFGIQKMRASTLMLASFEETNEHLFEAAVHHRADPVKGVS 1701
Query: 1657 ENIIMGQLPRMGTGCFDLLLD 1677
E IIMG+ +GTG FDLLL
Sbjct: 1702 ECIIMGKQVSLGTGSFDLLLS 1722
>gi|316997021|dbj|BAJ52638.1| RNA polymerase III largest subunit [Monosiga ovata]
Length = 931
Score = 114 bits (284), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 137/262 (52%), Gaps = 26/262 (9%)
Query: 1427 KMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFL 1486
K+Q E D V +E + RC + + Q + +M + K+ + K L
Sbjct: 678 KLQLEVD-VHTVETAILERCGKLKL----KRQNVWVMRGN--KIAVSPPSQSKSNAYFVL 730
Query: 1487 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1546
+ ++A L + ++G++ I + + + D K R + FK +A+ G +L+
Sbjct: 731 QQLKAE-LPHVVIRGVDRISRAVVQ--KVDEKGRAV------FKVLAE------GDNLLH 775
Query: 1547 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1606
V+ R V R SN I ++ + LGIEA R ++ E+ + YG+ +++RHL++L D+M
Sbjct: 776 VMGTRGVLGTRVTSNHILDVERTLGIEAARATIISEVGQTVAPYGVSIDWRHLSILADLM 835
Query: 1607 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1666
T++G ++ ITR GI + + LM SFE+T D+L DAA H D + GVSE II+G
Sbjct: 836 TSRGEVLGITRFGIAKMNERVLMLASFEKTNDILFDAAVHGLKDDIDGVSECIILGVPIS 895
Query: 1667 MGTGCFDLLLDAEKCKDGIEIP 1688
+GTG F L+ A D I+ P
Sbjct: 896 LGTGLFSLMRRA----DNIQPP 913
>gi|38232351|gb|AAR15011.1| RNA polymerase II largest subunit [Podura aquatica]
Length = 306
Score = 114 bits (284), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 61/71 (85%), Gaps = 4/71 (5%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD----SKMQDEEDAVDKMEDDM 56
ME I+EKINAGFGDDLNCIFNDDNAEK VLRIRIMNS+D +QDE+D DKMEDDM
Sbjct: 236 MEQIAEKINAGFGDDLNCIFNDDNAEKXVLRIRIMNSEDGTKFGTVQDEDDNCDKMEDDM 295
Query: 57 FLRCIEANMLS 67
FLRCIEANMLS
Sbjct: 296 FLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 116 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 151
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 158 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 193
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 200 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 235
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 242 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 277
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 284 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 319
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 326 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 361
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 368 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 403
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 410 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 445
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 452 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 487
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 494 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 529
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 536 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 571
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 578 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 613
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 620 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 655
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 662 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 697
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 704 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 739
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 746 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 781
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 788 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 823
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 830 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 865
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 872 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 907
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 914 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 949
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 956 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 991
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 998 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1033
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1040 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1075
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1082 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1117
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1124 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1159
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1166 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1201
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1208 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1243
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1250 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1285
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1292 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1327
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1334 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1369
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1376 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1411
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1418 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1453
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 4/40 (10%)
Query: 1460 IRIMNSDDSK----MQDEEDAVDKMEDDMFLRCIEANMLS 1495
IRIMNS+D +QDE+D DKMEDDMFLRCIEANMLS
Sbjct: 267 IRIMNSEDGTKFGTVQDEDDNCDKMEDDMFLRCIEANMLS 306
>gi|321452423|gb|EFX63811.1| hypothetical protein DAPPUDRAFT_66722 [Daphnia pulex]
Length = 187
Score = 114 bits (284), Expect = 7e-22, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Query: 1516 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1575
D R+II + + + + L +G ++ +V++ + T SN+I E+F LGIEA
Sbjct: 3 DDVSRVII-KMDDSRNTPRYSLLVEGNNMREVMATYGIQGSSTTSNNILEVFSTLGIEAA 61
Query: 1576 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1635
+ ++ KE+ + ++ +G+ V+ RH+ALL D+M+ +G ++ ITRHG+ + + LM SFE
Sbjct: 62 KATIAKEIQSTMESHGMSVDRRHVALLSDLMSCRGEILGITRHGLAKMKSSVLMLASFER 121
Query: 1636 TVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
T D L DAA + + D + GVSE IIMG +GTG F LL K
Sbjct: 122 TSDHLFDAAYYGQEDEVSGVSERIIMGVPMGIGTGSFKLLYKTGK 166
>gi|313224155|emb|CBY43597.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 114 bits (284), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 1455 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1514
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+GIE I KVYM +P+
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1515 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+SKK+III GEF A +DW+LETDGT+L+K+LS+ ++
Sbjct: 474 EESKKKIIINREGEFSANSDWILETDGTALIKILSQPNI 512
Score = 95.1 bits (235), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 63/88 (71%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME ISEKI+ GFG+DL+CIFNDDNAE L LRIRI+N+ D + A DKMEDD FLR
Sbjct: 388 MEQISEKIHEGFGEDLHCIFNDDNAETLTLRIRIVNNGGKDEDDGDYADDKMEDDTFLRY 447
Query: 61 IEANMLSDMTLQFIRIMNSDDSKMQDEE 88
+EAN+LSDMTL+ I ++ M EE
Sbjct: 448 LEANILSDMTLKGIEQISKVYMSMPKEE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 111 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 170
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 171 EE 172
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 153 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 212
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 213 EE 214
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 195 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 254
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 255 EE 256
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 237 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 296
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 297 EE 298
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 279 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 338
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 339 EE 340
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 321 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 380
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 381 EE 382
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 363 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 422
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 423 EE 424
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 405 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 464
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 465 EE 466
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 447 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 506
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 507 EE 508
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 489 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 548
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 549 EE 550
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 531 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 590
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 591 EE 592
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 573 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 632
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 633 EE 634
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 615 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 674
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 675 EE 676
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 657 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 716
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 717 EE 718
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 699 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 758
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 759 EE 760
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 741 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 800
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 801 EE 802
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 783 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 842
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 843 EE 844
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 825 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 884
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 885 EE 886
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 867 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 926
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 927 EE 928
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 909 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 968
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 969 EE 970
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 951 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1010
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1011 EE 1012
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 993 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1052
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1053 EE 1054
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1035 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1094
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1095 EE 1096
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1077 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1136
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1137 EE 1138
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1119 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1178
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1179 EE 1180
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1161 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1220
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1221 EE 1222
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1203 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1262
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1263 EE 1264
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1245 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1304
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1305 EE 1306
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1287 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1346
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1347 EE 1348
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1329 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1388
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1389 EE 1390
EE
Sbjct: 474 EE 475
Score = 45.1 bits (105), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1371 MTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQD 1430
+TL+ IRI+N+ D + A DKMEDD FLR +EAN+LSDMTL+ I ++ M
Sbjct: 415 LTLR-IRIVNNGGKDEDDGDYADDKMEDDTFLRYLEANILSDMTLKGIEQISKVYMSMPK 473
Query: 1431 EE 1432
EE
Sbjct: 474 EE 475
>gi|126460696|ref|YP_001056974.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum calidifontis JCM
11548]
gi|126250417|gb|ABO09508.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum calidifontis JCM
11548]
Length = 382
Score = 114 bits (284), Expect = 7e-22, Method: Composition-based stats.
Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + + GI+ I KV + Q DSK +W + T+GT+L VL +V
Sbjct: 214 LLQVKISGIKGIKKVVL---QYDSKND-------------EWYIVTEGTNLEAVLQLEEV 257
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D RT+SND+ E+ +VLGIEA R + E+ VL GL V+ RH+ L+ D MT G +
Sbjct: 258 DKARTYSNDLHEVEEVLGIEAARTLIAHEIKRVLDEQGLDVDIRHMYLVADAMTWSGRVR 317
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
I RHG+ L R +FE TV L++AA E + +GV ENII G+ +GTG
Sbjct: 318 PIGRHGVVGAKESPLARAAFEVTVKTLIEAAVRGEEERFKGVVENIIAGKHVPIGTGIVK 377
Query: 1674 LLL 1676
LL+
Sbjct: 378 LLM 380
>gi|321475339|gb|EFX86302.1| hypothetical protein DAPPUDRAFT_45101 [Daphnia pulex]
Length = 1389
Score = 113 bits (283), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 19/198 (9%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + ++G+ + + +++ +T R + L +G ++ +V++ V
Sbjct: 1196 LPKVVIKGLPTVSRAVINIDETRKPPR--------------YYLLVEGNNMREVMATYGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
T SN+I E+ LGIEA + ++ KE+ ++ +G+ V+ RH+ALL D+M+ +G ++
Sbjct: 1242 QGSSTTSNNILEVSSTLGIEAAKATIAKEIKFTMESHGMSVDRRHVALLSDLMSCRGEIL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR+G+N+ LM SFE T D L DAA + + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRNGLNKMKESVLMLASFESTSDHLFDAAYYGQEDEVTGVSECIIMGIPMSIGTGAFK 1361
Query: 1674 LLLDAEKCKDGIEIPLAT 1691
LL K G +P T
Sbjct: 1362 LLY-----KTGKSVPPKT 1374
>gi|294878143|ref|XP_002768279.1| DNA-directed RNA polymerase III largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239870527|gb|EER00997.1| DNA-directed RNA polymerase III largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1133
Score = 113 bits (283), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 1512 LPQTDSKK-----RIIITES----GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSND 1562
LPQ K R+++ + G I L+E G L V+ V ++ SN
Sbjct: 924 LPQAPVKGLKQCSRVVVNKEEAKDGSKDTIYSLLVE--GYGLQDVMGIEGVVAEKSVSNH 981
Query: 1563 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1622
+ E+ VLGIEA RKS+ E++ +++ +G+ V+YRH+ +L D MT +G + I R GI++
Sbjct: 982 VLEVQSVLGIEAARKSIMSEIDVIMKHFGMSVDYRHIQMLGDCMTYRGETLGINRFGISK 1041
Query: 1623 QDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
+M SFE+T D L +AA DP+ GVSE+IIMG +GTG F L+ D K
Sbjct: 1042 MSNSTMMLASFEKTSDFLFEAAVFNRPDPVVGVSESIIMGNPVHLGTGLFKLMYDVPK 1099
>gi|44781|emb|CAA34086.1| RNA polymerase beta' subunit (AA 215) [Methanococcus vannielii]
Length = 216
Score = 113 bits (283), Expect = 9e-22, Method: Composition-based stats.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K I +++L ++G++L +V VD +T +N+I EI V
Sbjct: 45 IHLKGVPNIKRVIIR-----KEIDEYVLYSEGSNLKEVFEIDGVDTTKTTTNNIVEIQDV 99
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LG+EA R ++ +EM+ L GL V+ RHL ++ D+MT G + I RHGI + L
Sbjct: 100 LGVEAARNAIIREMDATLGNQGLTVDKRHLMMVADLMTTDGVVKPIGRHGIGGEKASVLA 159
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
R +FEETV L A+ D + GV ENII+G+ MGTGC ++ + E
Sbjct: 160 RAAFEETVKHLYSASMRGYVDDLSGVVENIIVGKPISMGTGCINVCIKKE 209
>gi|374327624|ref|YP_005085824.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum sp. 1860]
gi|356642893|gb|AET33572.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum sp. 1860]
Length = 379
Score = 113 bits (283), Expect = 1e-21, Method: Composition-based stats.
Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 16/178 (8%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
+ GI+ + KV + Q DSK +W + T+GT+L VL +VDP RT
Sbjct: 216 ISGIKGVRKVVL---QYDSKND-------------EWYIVTEGTNLEAVLQLEEVDPTRT 259
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+SND+ E+ +VLGIEA R V +E+ VL+ GL V+ RH+ ++ D MT G L I RH
Sbjct: 260 YSNDLHEVEEVLGIEATRALVAQEIKRVLEEQGLDVDIRHMYMVADAMTWSGRLRPIGRH 319
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
G+ L R +FE TV L++A+ E + +GV E+II G+ +GTG LL+
Sbjct: 320 GVVGAKESPLARAAFEVTVKTLIEASVRGEEEQFKGVVESIIAGKYVPIGTGIVRLLM 377
>gi|409095099|ref|ZP_11215123.1| DNA-directed RNA polymerase subunit A'' [Thermococcus zilligii AN1]
Length = 391
Score = 113 bits (282), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 18/176 (10%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+G+ +GK II + G+ ++++ T+G++L +VL VDP RT
Sbjct: 223 LKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNLKQVLKVPGVDPTRT 264
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+N+I EI +VLGIEA R ++ +E+ + ++ GL V+ RH+ L+ D+MT G + I RH
Sbjct: 265 RTNNIWEIAEVLGIEAARNAIIEEIVSTMREQGLEVDIRHIMLVADMMTLDGVIRPIGRH 324
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
G+ + L R SFE T L +AA E DP+ GV EN+++GQ +GTG +L
Sbjct: 325 GVVGEKASVLARASFEITTTHLFEAAERGEVDPLNGVVENVLIGQPVPVGTGVVNL 380
>gi|328874135|gb|EGG22501.1| RNA polymerase III [Dictyostelium fasciculatum]
Length = 1507
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 137/282 (48%), Gaps = 25/282 (8%)
Query: 1405 IEANMLSDMTLQFIRIMNSDDSKMQDEEDA--VDKMEDDMFLRCIEANMLSDMTLQFIRI 1462
IE L +++ + S + + D +D M+ ++ I+A++L L+
Sbjct: 1229 IEKTTLGQISVYIKEVFRSGGCYLSVKIDKHFIDSMQIEVSAESIKASILGTKGLK---- 1284
Query: 1463 MNSDDSKMQDEEDAVDKMEDD--MFLRCIE--ANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
+ + + E+ + E + + L ++ N L ++ + GI + +V + P
Sbjct: 1285 LKPANIETLGEKLRIKPPEHNRRLILYSLQFLKNNLPNVIVHGIPTVNRVVISKPNEKED 1344
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
K ++ E G L+KV++ + T SN I E+ +VLGIEAVR
Sbjct: 1345 KYQLLVE---------------GYDLLKVMATPGIKGTHTCSNHIMEVEKVLGIEAVRSI 1389
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ E+ ++ +G+ ++ RH+ L+ D+M KG ++ ITR GI + LM SFE+T D
Sbjct: 1390 IISEIQMIMVSHGMSIDIRHIMLMADLMCFKGEILGITRFGIAKMKESVLMLASFEKTTD 1449
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
L DAA H D + GVSE IIMG +GTG F LL A+K
Sbjct: 1450 HLFDAAVHRRQDDIVGVSECIIMGIPVPLGTGLFKLLYTAKK 1491
>gi|401403150|ref|XP_003881423.1| putative DNA-directed RNA polymerase III largest subunit [Neospora
caninum Liverpool]
gi|325115835|emb|CBZ51390.1| putative DNA-directed RNA polymerase III largest subunit [Neospora
caninum Liverpool]
Length = 1769
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Query: 1511 HLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVL 1570
H+ Q D K+ + L +G L V+ + V ++ SN + E+ Q+L
Sbjct: 1590 HVEQPDKTKKTVYG------------LAVEGYGLRDVMGTQGVKALQATSNHVMEVAQIL 1637
Query: 1571 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
GIEA R + E+ + Y + ++ RH+ LL DVMT +G ++ I R GI + LM
Sbjct: 1638 GIEAARAVIISEIRKCMDAYSMDIDCRHMTLLGDVMTFRGEVLGINRFGIQKMRASTLML 1697
Query: 1631 CSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
SFEET + L +AA H ADP++GVSE IIMG+ +GTG FDLLL
Sbjct: 1698 ASFEETNEHLFEAAVHHRADPVKGVSECIIMGKQVSLGTGSFDLLLS 1744
>gi|440795844|gb|ELR16958.1| ferrochelatase [Acanthamoeba castellanii str. Neff]
Length = 472
Score = 113 bits (282), Expect = 1e-21, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N+L + ++GI + R +I + G A A + L +G +L+ V++
Sbjct: 260 NLLPSVLIRGIPTV-------------SRAVINKKGS-GADARYNLLVEGYNLLSVMATP 305
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
V RT SN I E+ LGIEA R ++ E+ ++ +G+ ++ RH+ LL D+M +G
Sbjct: 306 GVVGSRTTSNHIIEVMTTLGIEAARVTIMNEIQYTMKEHGMNIDTRHVMLLADLMCFRGE 365
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
++ ITRHGI++ + +M SFE+T D L +A+ HA D + GVSE+IIMG +GTG
Sbjct: 366 ILGITRHGIDKMNDSVMMLASFEKTTDHLFNASFHARQDTITGVSESIIMGIPIAVGTGL 425
Query: 1672 FDLL 1675
F LL
Sbjct: 426 FKLL 429
>gi|448112703|ref|XP_004202165.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359465154|emb|CCE88859.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 18/197 (9%)
Query: 1480 MEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLE 1538
M + +F R + L + + G+ I + +++ + D KK +++
Sbjct: 1248 MNNSLFFRAQVLKRALPHICVNGLSDISRAVINI-RDDGKKELLV--------------- 1291
Query: 1539 TDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRH 1598
+G L V+S V +T +N + EIF+VLGIEA R S+ KE++ + +G+ V+ RH
Sbjct: 1292 -EGYGLKNVMSTDGVVGTKTTTNHVLEIFEVLGIEAARASIIKEIDYTMTNHGMSVDPRH 1350
Query: 1599 LALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSEN 1658
+ LL DVMT KG ++ ITR G+++ L SFE+T D L DA+ + + D + GVSE
Sbjct: 1351 IQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKEDKIEGVSEC 1410
Query: 1659 IIMGQLPRMGTGCFDLL 1675
II+GQ +GTG F L+
Sbjct: 1411 IILGQTMNIGTGAFKLV 1427
>gi|115459150|ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa Japonica Group]
gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|116310339|emb|CAH67354.1| OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa Indica Group]
gi|215768005|dbj|BAH00234.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 123/218 (56%), Gaps = 27/218 (12%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+ +R++ D SK++ +DK + L +++ ML + ++GI +
Sbjct: 1165 EHVRVI--DKSKLRIYPAGIDKSKLLYELHHLKS-MLPKVIVKGIPTV------------ 1209
Query: 1518 KKRIIITESGE-----FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1572
+R +I+E+GE +K L +GT+L+ V+ VD ++T SN I E+ + LGI
Sbjct: 1210 -ERAVISETGEENDKRYK------LLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGI 1262
Query: 1573 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1632
EA R+S+ E+ ++ +G+ ++ RH+ LL D+MT KG ++ ITR+GI + + LM S
Sbjct: 1263 EAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLAS 1322
Query: 1633 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
FE+T + L +A+ D + GVSE IIMG ++GTG
Sbjct: 1323 FEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTG 1360
>gi|58409|emb|CAA42846.1| subunit A'' of RNA polymerase [Thermococcus celer]
Length = 199
Score = 113 bits (282), Expect = 1e-21, Method: Composition-based stats.
Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 16/179 (8%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+G+ +GK + DSK +GE+ ++ T+G++ +VL VDP RT
Sbjct: 29 LKGLSRVGKTVI---TKDSK-------TGEY------IIRTEGSNFKQVLKVPGVDPTRT 72
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+NDI EI +VLGIEA R ++ E+ ++ GL V+ RH+ L+ D+MT G + I RH
Sbjct: 73 RTNDIREIAEVLGIEAARNAIIDEILKTMEEQGLEVDVRHIMLVADMMTLDGVIRPIGRH 132
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
GI + L R +FE T L +AA DP+ GV EN+++GQ +GTG L ++
Sbjct: 133 GIVGEKASVLARAAFEITTQHLFEAAERGAVDPLNGVVENVLIGQPVPVGTGTVKLAMN 191
>gi|222629113|gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 123/218 (56%), Gaps = 27/218 (12%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+ +R++ D SK++ +DK + L +++ ML + ++GI +
Sbjct: 1103 EHVRVI--DKSKLRIYPAGIDKSKLLYELHHLKS-MLPKVIVKGIPTV------------ 1147
Query: 1518 KKRIIITESGE-----FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1572
+R +I+E+GE +K L +GT+L+ V+ VD ++T SN I E+ + LGI
Sbjct: 1148 -ERAVISETGEENDKRYK------LLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGI 1200
Query: 1573 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1632
EA R+S+ E+ ++ +G+ ++ RH+ LL D+MT KG ++ ITR+GI + + LM S
Sbjct: 1201 EAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLAS 1260
Query: 1633 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
FE+T + L +A+ D + GVSE IIMG ++GTG
Sbjct: 1261 FEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTG 1298
>gi|395646425|ref|ZP_10434285.1| DNA-directed RNA polymerase, subunit A'' [Methanofollis liminatans
DSM 4140]
gi|395443165|gb|EJG07922.1| DNA-directed RNA polymerase, subunit A'' [Methanofollis liminatans
DSM 4140]
Length = 389
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+++ + G +++L T+G+++ V VD RT +N+I EI Q+LGIEA R ++
Sbjct: 231 RVVVRKEG-----GEYILYTEGSNIKDVFEIEGVDTTRTRTNNINEISQILGIEAARNAI 285
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EM + L G+ V+ RH+ L+ D+M G + I RHGI + L R +FE TV+
Sbjct: 286 IDEMKSTLGEQGISVDVRHIMLIADMMCMDGEVKQIGRHGIAGEKESVLSRAAFEVTVNH 345
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
L+DAA E D + GV+EN+I+GQ +MGTG L+
Sbjct: 346 LLDAAVANETDILNGVTENVIVGQPIQMGTGDIKLI 381
>gi|321473486|gb|EFX84453.1| hypothetical protein DAPPUDRAFT_209553 [Daphnia pulex]
Length = 1387
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 92/155 (59%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G ++ +V++ V T SN+I E+F LGIEA + ++ KE+ ++ +G+ V
Sbjct: 1221 YYLLVEGDNMREVMATYGVQGSSTTSNNILEVFSTLGIEAAKATIAKEIQFTMESHGMSV 1280
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ALL D+M+ +G ++ ITR+G+ + LM SFE T D L DAA + + D + G
Sbjct: 1281 DRRHVALLSDLMSCRGEILGITRNGLAKMKESVLMLASFERTSDHLFDAAYYGQEDEVTG 1340
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL 1689
VSE IIMG +GTG F LL K +PL
Sbjct: 1341 VSECIIMGIPMAIGTGAFKLLYKTGKKDPPKPVPL 1375
>gi|294659690|ref|XP_462102.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
gi|218511816|sp|Q6BI69.2|RPC1_DEBHA RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|199434160|emb|CAG90588.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
Length = 1457
Score = 112 bits (281), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 87/139 (62%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V+S V +T +N I E+FQVLGIEA R S+ E++ + +G+ V+
Sbjct: 1292 LLVEGYGLKEVMSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDP 1351
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DA+ + + D + GVS
Sbjct: 1352 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVS 1411
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F L+
Sbjct: 1412 ECIILGQTMNIGTGAFKLV 1430
>gi|256272995|gb|EEU07959.1| Rpo31p [Saccharomyces cerevisiae JAY291]
gi|349581277|dbj|GAA26435.1| K7_Rpo31p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1460
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 18/202 (8%)
Query: 1475 DAVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIA 1533
A + E+D+F R + L D+ ++G+ I + +++ + D K+ +++
Sbjct: 1247 SAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINI-RDDGKRELLV---------- 1295
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+G L V+ V RT +N + E+F VLGIEA R S+ +E+N + +G+
Sbjct: 1296 ------EGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMS 1349
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D +
Sbjct: 1350 VDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVE 1409
Query: 1654 GVSENIIMGQLPRMGTGCFDLL 1675
GVSE II+GQ +GTG F ++
Sbjct: 1410 GVSECIILGQTMSIGTGSFKVV 1431
>gi|6324690|ref|NP_014759.1| Rpo31p [Saccharomyces cerevisiae S288c]
gi|133356|sp|P04051.1|RPC1_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName: Full=RNA
polymerase III subunit C160
gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit [Saccharomyces cerevisiae]
gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
gi|151945738|gb|EDN63979.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|285814998|tpg|DAA10891.1| TPA: Rpo31p [Saccharomyces cerevisiae S288c]
gi|392296445|gb|EIW07547.1| Rpo31p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1460
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 18/202 (8%)
Query: 1475 DAVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIA 1533
A + E+D+F R + L D+ ++G+ I + +++ + D K+ +++
Sbjct: 1247 SAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINI-RDDGKRELLV---------- 1295
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+G L V+ V RT +N + E+F VLGIEA R S+ +E+N + +G+
Sbjct: 1296 ------EGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMS 1349
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D +
Sbjct: 1350 VDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVE 1409
Query: 1654 GVSENIIMGQLPRMGTGCFDLL 1675
GVSE II+GQ +GTG F ++
Sbjct: 1410 GVSECIILGQTMSIGTGSFKVV 1431
>gi|190407445|gb|EDV10712.1| DNA-directed RNA polymerase III largest subunit [Saccharomyces
cerevisiae RM11-1a]
gi|207341165|gb|EDZ69295.1| YOR116Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259149599|emb|CAY86403.1| Rpo31p [Saccharomyces cerevisiae EC1118]
gi|323331486|gb|EGA72901.1| Rpo31p [Saccharomyces cerevisiae AWRI796]
gi|323352093|gb|EGA84630.1| Rpo31p [Saccharomyces cerevisiae VL3]
Length = 1460
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 18/202 (8%)
Query: 1475 DAVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIA 1533
A + E+D+F R + L D+ ++G+ I + +++ + D K+ +++
Sbjct: 1247 SAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINI-RDDGKRELLV---------- 1295
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+G L V+ V RT +N + E+F VLGIEA R S+ +E+N + +G+
Sbjct: 1296 ------EGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMS 1349
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D +
Sbjct: 1350 VDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVE 1409
Query: 1654 GVSENIIMGQLPRMGTGCFDLL 1675
GVSE II+GQ +GTG F ++
Sbjct: 1410 GVSECIILGQTMSIGTGSFKVV 1431
>gi|432330444|ref|YP_007248587.1| DNA-directed RNA polymerase, subunit A'' [Methanoregula formicicum
SMSP]
gi|432137153|gb|AGB02080.1| DNA-directed RNA polymerase, subunit A'' [Methanoregula formicicum
SMSP]
Length = 391
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 94/157 (59%), Gaps = 7/157 (4%)
Query: 1520 RIII-TESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
R+++ E+GE+ +L T+G++L V VD RT +N+I EI VLGIEA R +
Sbjct: 234 RVVVRKETGEY------ILYTEGSNLKDVFDVTGVDTTRTRTNNISEIASVLGIEAARNA 287
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
V E + L G+ V+ RHL L+ D+M +G + I RHGI + L R +FE TV+
Sbjct: 288 VIHEAVSTLNEQGIAVDVRHLMLVSDMMCMEGEVKQIGRHGIAGEKESVLSRAAFEVTVN 347
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
L+DAA E D + GV+EN+I+GQ ++GTG L+
Sbjct: 348 HLLDAAVANEVDELSGVTENVIVGQPIQLGTGDVKLI 384
>gi|158298044|ref|XP_318130.4| AGAP004703-PA [Anopheles gambiae str. PEST]
gi|157014619|gb|EAA13195.5| AGAP004703-PA [Anopheles gambiae str. PEST]
Length = 1379
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 100/175 (57%), Gaps = 5/175 (2%)
Query: 1502 IEAIGKVYM-HLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFS 1560
I AI V + LPQ S+ I + +S + + L +G L V+ V RT S
Sbjct: 1190 ITAIPNVVVAGLPQV-SRAVIAVDDS---RGTPKYRLCVEGCGLRDVMGTYGVIGNRTKS 1245
Query: 1561 NDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGI 1620
N+I E++Q LGIEA R ++ E+ V++ +G+ V++RH+ LL MT++G ++ ITRHG+
Sbjct: 1246 NNILEVYQTLGIEAARTTIMTEITEVMEGHGMSVDHRHIMLLSGQMTSRGEVLGITRHGL 1305
Query: 1621 NRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
+ SFE+T D L DAA + + D + GVSE II+G +GTG F L+
Sbjct: 1306 AKMRESVFNLASFEKTADHLFDAAYYGQTDSVDGVSERIILGMPASIGTGLFKLI 1360
>gi|257051866|ref|YP_003129699.1| RNA polymerase Rpb1 domain 5 [Halorhabdus utahensis DSM 12940]
gi|256690629|gb|ACV10966.1| RNA polymerase Rpb1 domain 5 [Halorhabdus utahensis DSM 12940]
Length = 907
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 3/152 (1%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV-EKEMNTVLQFYGL 1592
+++L T+G++ VL VD RT N+I EI+ LG+EA R+S+ E+ MNT L+ GL
Sbjct: 754 EFVLYTEGSAFGDVLGIEGVDASRTTCNNIHEIYSNLGVEAARESIIEETMNT-LEEQGL 812
Query: 1593 Y-VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 1651
VN RHL L+ D+MT G + +I RHGI+ L R +FE TV L+DAA H E D
Sbjct: 813 DDVNVRHLMLVADIMTNNGVIESIGRHGISGSKDSVLARAAFEVTVSHLLDAAIHGEIDA 872
Query: 1652 MRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
+ GV+EN+I+G+ ++GTG +L + +
Sbjct: 873 LNGVTENVIVGKPIKLGTGDVNLRMGSHTGGG 904
>gi|256811205|ref|YP_003128574.1| DNA-directed RNA polymerase subunit A'' [Methanocaldococcus fervens
AG86]
gi|256794405|gb|ACV25074.1| DNA-directed RNA polymerase, subunit A'' [Methanocaldococcus fervens
AG86]
Length = 387
Score = 112 bits (280), Expect = 2e-21, Method: Composition-based stats.
Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 5/161 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+R+++ + G+ +++L + G++L +V VD RT +N+I EI +VLGIEA R +
Sbjct: 224 ERVLVKKEGD-----EYVLYSQGSNLREVFKIEGVDTTRTITNNIIEIQEVLGIEAARNA 278
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ EM L+ GL V+ RHL L+ D+MTA G + I RHG+ + L R +FEETV
Sbjct: 279 IINEMRNTLEQQGLEVDIRHLMLVADMMTADGEVKPIGRHGVAGEKGSVLARAAFEETVK 338
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
L AA + D ++GV EN+I+G+ +GTGC +L +D E
Sbjct: 339 HLYAAAERGDVDKLKGVIENVIVGKPIYLGTGCVELSIDRE 379
>gi|365763066|gb|EHN04597.1| Rpo31p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1460
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 18/202 (8%)
Query: 1475 DAVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIA 1533
A + E+D+F R + L D+ ++G+ I + +++ + D K+ +++
Sbjct: 1247 SAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINI-RDDGKRELLV---------- 1295
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+G L V+ V RT +N + E+F VLGIEA R S+ +E+N + +G+
Sbjct: 1296 ------EGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMS 1349
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D +
Sbjct: 1350 VDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVE 1409
Query: 1654 GVSENIIMGQLPRMGTGCFDLL 1675
GVSE II+GQ +GTG F ++
Sbjct: 1410 GVSECIILGQTMSIGTGSFKVV 1431
>gi|145592517|ref|YP_001154519.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum arsenaticum DSM
13514]
gi|145284285|gb|ABP51867.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum arsenaticum DSM
13514]
Length = 379
Score = 112 bits (279), Expect = 2e-21, Method: Composition-based stats.
Identities = 73/195 (37%), Positives = 107/195 (54%), Gaps = 18/195 (9%)
Query: 1483 DMF-LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
D+F LR + +L + + GI+ + KV + Q DSK +W + T+G
Sbjct: 200 DIFKLRKVRDKILQ-IKVAGIKGVRKVVL---QYDSKAD-------------EWFIVTEG 242
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
T+L VL +VD RT+SND+ E+ +VLGIEA R V +E+ VL GL V+ RH+ +
Sbjct: 243 TNLEAVLQLEEVDATRTYSNDLHEVEEVLGIEAARALVAQEIKRVLDEQGLDVDIRHMYM 302
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
+ D MT G L I RHG+ L R +FE TV L++A+ E + +GV E+II
Sbjct: 303 VADTMTWSGRLRPIGRHGVVGTKESPLARAAFEVTVKTLIEASVRGEEEAFKGVVESIIA 362
Query: 1662 GQLPRMGTGCFDLLL 1676
G+ +GTG LL+
Sbjct: 363 GKYIPIGTGIVRLLM 377
>gi|119872215|ref|YP_930222.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum islandicum DSM
4184]
gi|119673623|gb|ABL87879.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum islandicum DSM
4184]
Length = 379
Score = 112 bits (279), Expect = 2e-21, Method: Composition-based stats.
Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 17/195 (8%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
D + +R I +L + + GI+ + KV + Q D+K +W + T+G
Sbjct: 200 DVLRIRKIRDKILQ-IKIAGIKGVRKVVL---QYDTKN-------------GEWYIITEG 242
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
T+L VL +VD RT+SND+ E+ +VLGIEA R V +E+ VL GL V+ RH+ L
Sbjct: 243 TNLEAVLQLEEVDATRTYSNDLHEVEEVLGIEATRTLVAQEIKRVLDEQGLDVDIRHMYL 302
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
+ D MT G L I RHG+ L R +FE TV L++AA E + +GV E+II
Sbjct: 303 VADAMTWSGKLRPIGRHGVVGTKESPLARAAFEVTVKTLIEAAVRGEEEKFKGVVESIIA 362
Query: 1662 GQLPRMGTGCFDLLL 1676
G+ +GTG LL+
Sbjct: 363 GKYIPVGTGIVRLLM 377
>gi|219121691|ref|XP_002181195.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407181|gb|EEC47118.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1281
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 17/190 (8%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L ++ +QGI + R +I ES + + L +G L V+ +
Sbjct: 1109 LPNVIVQGIPTV-------------ARAVINESNQ-SGTPTYNLLMEGYGLQDVMGSPGI 1154
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D + T +N + E+ VLG+EA R + E++ ++ YG+ ++ RHL LL DVMT KG ++
Sbjct: 1155 DGLHTTTNHVLEVEDVLGVEAARTQISAEIDNIMSAYGIGIDQRHLLLLSDVMTFKGEVL 1214
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+++ LM SFE+T D L DAA H D + GVSE IIMG +GTG
Sbjct: 1215 GITRFGVSKMRESVLMLASFEKTTDHLFDAAVHGRTDTIVGVSECIIMGMEVPVGTGLPA 1274
Query: 1674 LLLDAEKCKD 1683
L KC +
Sbjct: 1275 LYW---KCTN 1281
>gi|213410469|ref|XP_002176004.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
gi|212004051|gb|EEB09711.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
Length = 1406
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 1508 VYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF 1567
V +P+T R II + GE K L +G L +V++ + +TF+N + E+
Sbjct: 1219 VVSGIPKTS---RAIILQEGEKKQ-----LVVEGYGLREVMNTEGIVGSKTFTNHVMEMN 1270
Query: 1568 QVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1627
VLGIEA R+S+ E+++ ++ +GL V+ RH+ LL DVMT KG ++ ITR G+ +
Sbjct: 1271 AVLGIEAARQSIIYEIDSTMRNHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSV 1330
Query: 1628 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
L SFE+T D L DAAA D + G+SE I++G+L +GT F L+ E+ D
Sbjct: 1331 LSLASFEKTTDHLFDAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIRTTEESHD 1386
>gi|449462093|ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 100/179 (55%), Gaps = 12/179 (6%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
NML + ++GI+ +G+ +I E + + + L +GT L V+
Sbjct: 1211 NMLPGVVVKGIKTVGRA------------VIKEEKDKARNAKKFSLLVEGTGLQAVMGTE 1258
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
VD T SN I E+ QVLGIEA RK + +E+ ++ +G+ ++ RH+ LL D+MT +G
Sbjct: 1259 GVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGE 1318
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
++ ITR GI + D LM SFE+T D L +A+ + D + GVSE +IMG +GTG
Sbjct: 1319 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTG 1377
>gi|379005504|ref|YP_005261176.1| DNA-directed RNA polymerase, subunit A'''' [Pyrobaculum oguniense
TE7]
gi|375160957|gb|AFA40569.1| DNA-directed RNA polymerase, subunit A'''' [Pyrobaculum oguniense
TE7]
Length = 379
Score = 112 bits (279), Expect = 3e-21, Method: Composition-based stats.
Identities = 73/195 (37%), Positives = 107/195 (54%), Gaps = 18/195 (9%)
Query: 1483 DMF-LRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
D+F LR + +L + + GI+ + KV + Q DSK +W + T+G
Sbjct: 200 DIFKLRKVRDKILQ-IKVAGIKGVRKVVL---QYDSKAD-------------EWFIVTEG 242
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
T+L VL +VD RT+SND+ E+ +VLGIEA R V +E+ VL GL V+ RH+ +
Sbjct: 243 TNLEAVLQLEEVDATRTYSNDLHEVEEVLGIEAARALVAQEIKRVLDEQGLDVDIRHMYM 302
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
+ D MT G L I RHG+ L R +FE TV L++A+ E + +GV E+II
Sbjct: 303 VADTMTWSGRLRPIGRHGVVGAKESPLARAAFEVTVKTLIEASVRGEEEAFKGVVESIIA 362
Query: 1662 GQLPRMGTGCFDLLL 1676
G+ +GTG LL+
Sbjct: 363 GKYIPIGTGIVRLLM 377
>gi|91773157|ref|YP_565849.1| DNA-directed RNA polymerase subunit A'' [Methanococcoides burtonii
DSM 6242]
gi|91712172|gb|ABE52099.1| DNA-directed RNA polymerase subunit A'' [Methanococcoides burtonii
DSM 6242]
Length = 386
Score = 112 bits (279), Expect = 3e-21, Method: Composition-based stats.
Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 18/180 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + +TL+GIE I KR++I + G+ ++ L T+G+ L ++L
Sbjct: 212 AKNIHGITLKGIEGI-------------KRVVIRKDGD-----EYTLYTEGSMLKEILEV 253
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
+D RT +N+I EI++V GIEA R ++ KE + L+ GL V+ RHL L+ D+MT G
Sbjct: 254 EGIDLSRTSTNNIGEIYEVFGIEAARFAIIKEASDTLREQGLTVDIRHLMLVSDIMTCDG 313
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA + D + GV+ENII+GQ ++GTG
Sbjct: 314 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGDIDELNGVTENIIVGQPIKLGTG 373
>gi|410670215|ref|YP_006922586.1| DNA-directed RNA polymerase subunit A'' [Methanolobus psychrophilus
R15]
gi|409169343|gb|AFV23218.1| DNA-directed RNA polymerase subunit A'' [Methanolobus psychrophilus
R15]
Length = 380
Score = 112 bits (279), Expect = 3e-21, Method: Composition-based stats.
Identities = 68/180 (37%), Positives = 102/180 (56%), Gaps = 18/180 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + +TL+GIE I KR++I + GE ++ L T+G+ L +VL
Sbjct: 212 AKNIHTITLKGIEGI-------------KRVVIRKDGE-----EYTLYTEGSQLKEVLQI 253
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT++N++ EI+ V GIEA R ++ E N L GL V+ RH+ L+ D+M G
Sbjct: 254 EGVDVTRTYTNNVEEIYDVFGIEAARNAIITEANNTLGEQGLTVDIRHIMLVSDIMCCDG 313
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA + D + GV+ENII+GQ ++GTG
Sbjct: 314 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGDLDELNGVTENIIVGQPIKLGTG 373
>gi|156937039|ref|YP_001434835.1| DNA-directed RNA polymerase subunit A [Ignicoccus hospitalis KIN4/I]
gi|156566023|gb|ABU81428.1| DNA-directed RNA polymerase, subunit A [Ignicoccus hospitalis KIN4/I]
Length = 422
Score = 112 bits (279), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/147 (44%), Positives = 93/147 (63%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+++L TDG++L +VL VDP RT S+ I EI +VLGIEA R+++ E+ VL+ GL
Sbjct: 260 EYVLVTDGSNLAQVLEVEGVDPTRTVSDSIKEIEEVLGIEAARQAIINEILDVLENQGLD 319
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ LL D MT G + + RHGI L R +FE TV L+DAA E D ++
Sbjct: 320 VDRRHIMLLADAMTWSGEVRQVGRHGIAGTKPSVLARAAFEVTVKQLVDAAVEGEVDELK 379
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEK 1680
GV+ENII+GQ +GTG L ++ ++
Sbjct: 380 GVTENIIIGQPIPLGTGMVLLAMNPQE 406
>gi|146302820|ref|YP_001190136.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera sedula DSM
5348]
gi|172046881|sp|A4YCR0.1|RPOA2_METS5 RecName: Full=DNA-directed RNA polymerase subunit A''
gi|145701070|gb|ABP94212.1| DNA-directed RNA polymerase, subunit A' [Metallosphaera sedula DSM
5348]
Length = 392
Score = 112 bits (279), Expect = 3e-21, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR II + G+ ++++ TDG++L VL + VD R +N++ E+ VLG+EA R+
Sbjct: 235 KRAIIRKKGD-----EYVIITDGSNLEGVLGVKGVDVSRIETNNLHEVESVLGVEAAREL 289
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E+ VL+ GL V+ RH+ L+ D+MT G + I RHG+ + T L R +FE TV
Sbjct: 290 ITREIKRVLEEQGLDVDIRHIELVSDIMTRTGEVRQIGRHGVTGEKTSVLARAAFEVTVK 349
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAAA + + +GV ENII+GQ ++GTG +LL+
Sbjct: 350 HLLDAAARGDMEEFKGVVENIIIGQPIKLGTGMVELLM 387
>gi|374633178|ref|ZP_09705545.1| DNA-directed RNA polymerase, subunit A'''' [Metallosphaera
yellowstonensis MK1]
gi|373524662|gb|EHP69539.1| DNA-directed RNA polymerase, subunit A'''' [Metallosphaera
yellowstonensis MK1]
Length = 397
Score = 112 bits (279), Expect = 3e-21, Method: Composition-based stats.
Identities = 72/184 (39%), Positives = 110/184 (59%), Gaps = 10/184 (5%)
Query: 1498 TLQGIEAIGKVYMHLPQTDSK-----KRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
++ I A+ KV + T K KR I+ + GE ++++ TDG++L VL +
Sbjct: 215 SMDSITALFKVREKILSTKIKGVKGIKRAIVQKRGE-----EYVIITDGSNLEGVLGVKG 269
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
+D R +N++ E+ VLGIEAVR+ + KE+ VL GL V+ RH+ L+ D+MT G +
Sbjct: 270 IDIRRIETNNLHEVENVLGIEAVRELIMKEIKRVLDEQGLDVDIRHIELVSDIMTRTGEV 329
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
I RHG+ + T L R +FE TV L+DAAA + + +GV ENII+GQ ++GTG
Sbjct: 330 RQIGRHGVTGEKTSVLARAAFEVTVKHLLDAAARGDMEEFKGVVENIIIGQPIKLGTGMV 389
Query: 1673 DLLL 1676
+LL+
Sbjct: 390 ELLM 393
>gi|149234447|ref|XP_001523103.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146453212|gb|EDK47468.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1450
Score = 112 bits (279), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 22/226 (9%)
Query: 1451 MLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVY 1509
M D L R+ S ++ ED +++F R + +L D+ ++G+ I +
Sbjct: 1219 MGKDRILVACRVTESKTESLKSGED----QRNNLFFRMQLLKRVLPDICIKGLPNIFRAV 1274
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+++ + D+KK +++ +G L V++ + +T +N + E+ ++
Sbjct: 1275 INI-KDDNKKELLV----------------EGYGLKDVMNTEGIVGTKTTTNHVLEVNEI 1317
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R S+ +E++ + YG+ V+ RH+ LL DVMT KG ++ ITR G+++ L
Sbjct: 1318 LGIEAARSSIIREIDYTMSNYGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQ 1377
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
SFE+T D L DAA + + D + GVSE II+GQ +GTG F L+
Sbjct: 1378 LASFEKTTDHLFDAAFYMKRDKIEGVSECIILGQTMAIGTGAFKLV 1423
>gi|297793561|ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata]
gi|297310500|gb|EFH40924.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata]
Length = 1376
Score = 111 bits (278), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 18/208 (8%)
Query: 1472 DEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITE----SG 1527
D VDK L ++ N+L ++ + GI+ + +R+++ E +
Sbjct: 1165 DITPVVDKSRTHFNLHNLK-NVLPNIIVNGIKTV-------------ERVVVAEDMDKNK 1210
Query: 1528 EFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVL 1587
+ W L +GT+L+ V+ ++ T SN++ E+ + LGIEA R ++ E+ TV+
Sbjct: 1211 QIDGKTRWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVM 1270
Query: 1588 QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHA 1647
+G+ ++ RH+ LL DVMT +G ++ I R GI + D LM+ SFE T D L AA
Sbjct: 1271 GNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAISG 1330
Query: 1648 EADPMRGVSENIIMGQLPRMGTGCFDLL 1675
+ D + GV+E +IMG ++GTG +L
Sbjct: 1331 KVDNIEGVTECVIMGIPMKLGTGILKVL 1358
>gi|300707342|ref|XP_002995883.1| hypothetical protein NCER_101107 [Nosema ceranae BRL01]
gi|239605116|gb|EEQ82212.1| hypothetical protein NCER_101107 [Nosema ceranae BRL01]
Length = 1335
Score = 111 bits (278), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 18/172 (10%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
+ G+ ++ KV +H + G FK I +G L +L + VD T
Sbjct: 1171 INGLSSVNKVLIH------------NDKGMFKCI------IEGYGLQSILGLKGVDYTTT 1212
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
SN I EI +VLGIEA R + E+ V+ +G+ ++ RH+ LL D MT KG ++ ITR
Sbjct: 1213 TSNAILEIQEVLGIEAARAHIISEIEYVVGKHGIKIDPRHVMLLADTMTYKGEVLGITRF 1272
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
GI++ LM SFE+T + L +AA + +D ++GVSE+II+G+ +GTG
Sbjct: 1273 GISKMSCSTLMLASFEQTSEHLFEAAIRSRSDEVKGVSESIILGKNIGIGTG 1324
>gi|171186407|ref|YP_001795326.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum neutrophilum
V24Sta]
gi|170935619|gb|ACB40880.1| DNA-directed RNA polymerase, subunit A'' [Pyrobaculum neutrophilum
V24Sta]
Length = 379
Score = 111 bits (278), Expect = 4e-21, Method: Composition-based stats.
Identities = 73/195 (37%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
D + +R I +L + + GI+ I KV + Q DSK +W + T+G
Sbjct: 200 DILKMRKIRDKVLQ-IRISGIKGIRKVVL---QHDSKND-------------EWYIVTEG 242
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
++L VL +VD RT+SND+ E+ +VLGIEA R V +E+ VL+ GL V+ RH+ L
Sbjct: 243 SNLEAVLQLEEVDQSRTYSNDLHEVEEVLGIEAARALVAQEIKRVLEEQGLDVDIRHMYL 302
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
+ D MT G L I RHG+ L R +FE TV L++A+ E + +GV ENI+
Sbjct: 303 VADTMTWSGRLKPIGRHGVVGAKESPLARAAFEVTVKTLVEASVRGEEEQFKGVVENIVA 362
Query: 1662 GQLPRMGTGCFDLLL 1676
G+ +GTG LL+
Sbjct: 363 GRYVPVGTGIVRLLM 377
>gi|254169237|ref|ZP_04876071.1| DNA-directed RNA polymerase, subunit A'' [Aciduliprofundum boonei
T469]
gi|289596764|ref|YP_003483460.1| DNA-directed RNA polymerase, subunit A'' [Aciduliprofundum boonei
T469]
gi|197621833|gb|EDY34414.1| DNA-directed RNA polymerase, subunit A'' [Aciduliprofundum boonei
T469]
gi|289534551|gb|ADD08898.1| DNA-directed RNA polymerase, subunit A'' [Aciduliprofundum boonei
T469]
Length = 516
Score = 111 bits (277), Expect = 4e-21, Method: Composition-based stats.
Identities = 73/191 (38%), Positives = 104/191 (54%), Gaps = 17/191 (8%)
Query: 1507 KVYMHLPQTDSKKRIIITES----------GEFKAIA-------DWLLETDGTSLMKVLS 1549
++ + LP+ KK +TES G +AI +W++ T G++L VL
Sbjct: 323 RIKLKLPEPSYKKLYQLTESVKSLTLRGIKGISRAIVRKSQDNREWVIYTQGSNLKDVLD 382
Query: 1550 ERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAK 1609
+VD RT +N+I EI VLGIEA R ++ +E LQ GL V+ RH+ L+ D+MT
Sbjct: 383 IEEVDGARTRTNNIIEIADVLGIEAARNAIMEEAINTLQQQGLNVDMRHIMLVADIMTYN 442
Query: 1610 GHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGT 1669
G + AI RHGI + L R +FE T L+ A E D +RGV+ENII+GQ +GT
Sbjct: 443 GSVEAIGRHGIAGEKESVLARAAFEITAKHLLTAGVLGEEDKLRGVAENIIVGQPVTLGT 502
Query: 1670 GCFDLLLDAEK 1680
G L+ +K
Sbjct: 503 GAVTLIYKPKK 513
>gi|385303556|gb|EIF47620.1| dna-directed rna polymerase iii largest subunit [Dekkera bruxellensis
AWRI1499]
Length = 1472
Score = 111 bits (277), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 17/181 (9%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L+ + ++G+ + K +++ + D KK +++ +G L V++ V
Sbjct: 1276 LTKVVVKGLPEVAKAVINV-RDDGKKELLV----------------EGYGLKDVMATDGV 1318
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T +N + EIF VLGIEA R S+ E++ ++ +G+ V+ RHL LL DVMT KG ++
Sbjct: 1319 IATKTKTNHVIEIFHVLGIEAARSSIVSEIDYTMRSHGMVVDPRHLQLLADVMTYKGEIL 1378
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + + SFE+T D L DAA + + D + GVSE II+GQ +GTG F
Sbjct: 1379 GITRFGLAKMRDSVMQLASFEKTTDHLFDAAFYTKDDKVEGVSERIILGQTMSIGTGSFK 1438
Query: 1674 L 1674
L
Sbjct: 1439 L 1439
>gi|289193126|ref|YP_003459067.1| DNA-directed RNA polymerase, subunit A'' [Methanocaldococcus sp.
FS406-22]
gi|288939576|gb|ADC70331.1| DNA-directed RNA polymerase, subunit A'' [Methanocaldococcus sp.
FS406-22]
Length = 387
Score = 111 bits (277), Expect = 4e-21, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 90/144 (62%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+++L T G++L +V VD RT +N+I EI +VLGIEA R ++ EM L+ GL
Sbjct: 233 EYVLYTQGSNLREVFKIEGVDTTRTITNNIIEIQEVLGIEAARNAIINEMRNTLEQQGLE 292
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RHL L+ D+MTA G + I RHG+ + L R +FEETV L AA + D ++
Sbjct: 293 VDIRHLMLVADMMTADGEVKPIGRHGVAGEKGSVLARAAFEETVKHLYAAAERGDVDKLK 352
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLD 1677
GV EN+I+G+ +GTGC +L +D
Sbjct: 353 GVIENVIVGKPIYLGTGCVELTID 376
>gi|241633681|ref|XP_002408700.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215501234|gb|EEC10728.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1394
Score = 111 bits (277), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + ++GI + + +H T G + L +V++ V
Sbjct: 1196 LPSVVIKGIPSTSRAVIHADDTVGPTTTYPAAGGRGR-------------LREVMATYGV 1242
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ +E+ ++ +G+ V+ RHL LL D+MT +G ++
Sbjct: 1243 LGTRTSSNNTSEVEKCLGIEAARATIIREIGVTMESHGISVDRRHLMLLADLMTFRGEVL 1302
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITRHG+ R ALM SFE T D L DAA + + D + GVSE+II+G +GTG FD
Sbjct: 1303 GITRHGLARMKESALMLASFERTADHLFDAAYYGQVDEITGVSESIILGVPMGIGTGFFD 1362
Query: 1674 LL 1675
++
Sbjct: 1363 MV 1364
>gi|19112298|ref|NP_595506.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe 972h-]
gi|9297042|sp|O94666.1|RPC1_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName: Full=RPC158
gi|4467280|emb|CAB37604.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe]
gi|76782169|gb|ABA54855.1| RNA polymerase III largest subunit Rpc1 [Schizosaccharomyces pombe]
Length = 1405
Score = 111 bits (277), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 28/221 (12%)
Query: 1456 TLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQ 1514
TLQ I + S D K E +++ R +L D+ + GI I
Sbjct: 1184 TLQQIHVHTSSDGKSS---------ETEVYYRLQTYKRVLPDVVVAGIPTI--------- 1225
Query: 1515 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1574
+ +I ESG+ + L +GT L V++ + +T +N + E+ VLGIEA
Sbjct: 1226 ---NRSVINQESGKIE------LFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEA 1276
Query: 1575 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1634
R S+ E+ + +GL V+ RH+ LL DVMT KG ++ ITR G+ + L SFE
Sbjct: 1277 ARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFE 1336
Query: 1635 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
+T D L +AAA D + G+SE I++G+L +GT F L+
Sbjct: 1337 KTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLI 1377
>gi|66475716|ref|XP_627674.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
Iowa II]
gi|46229106|gb|EAK89955.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
Iowa II]
Length = 1871
Score = 111 bits (277), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 89/145 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G L+K++ + T SN + E+ +VLGIEA RK + +E+ + Y + +
Sbjct: 1689 YSLAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARKVIIQEVQKCMDAYSMDI 1748
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ LL D+MT +G ++ I+R GI + T LM SFEET + L +AA DP+ G
Sbjct: 1749 DLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEETNEHLFEAAFQNRVDPVFG 1808
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSE +IMG+ ++GTG FD+L ++
Sbjct: 1809 VSECVIMGKPIKIGTGSFDILYNSP 1833
>gi|348508629|ref|XP_003441856.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Oreochromis niloticus]
Length = 1390
Score = 111 bits (277), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + SK + + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVARAVIHIDEQSSKSK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+ RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+M+ KG ++
Sbjct: 1242 NGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEIL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ ++ PL
Sbjct: 1362 LLHKADRDPSPVKRPL 1377
>gi|32398906|emb|CAD98371.1| DNA-directed RNA polymerase II/III subunit, probable [Cryptosporidium
parvum]
Length = 1907
Score = 111 bits (277), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 89/145 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G L+K++ + T SN + E+ +VLGIEA RK + +E+ + Y + +
Sbjct: 1725 YSLAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARKVIIQEVQKCMDAYSMDI 1784
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ LL D+MT +G ++ I+R GI + T LM SFEET + L +AA DP+ G
Sbjct: 1785 DLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEETNEHLFEAAFQNRVDPVFG 1844
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSE +IMG+ ++GTG FD+L ++
Sbjct: 1845 VSECVIMGKPIKIGTGSFDILYNSP 1869
>gi|157130170|ref|XP_001655623.1| DNA-directed RNA polymerase II largest subunit [Aedes aegypti]
gi|108871980|gb|EAT36205.1| AAEL011692-PA [Aedes aegypti]
Length = 1298
Score = 111 bits (277), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Query: 1508 VYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF 1567
V LPQ S+ I + +S + + L +G L V++ V RT SN+I E++
Sbjct: 1116 VVAGLPQV-SRAVIAVDDS---RGPPTYKLCVEGYGLRDVMATYGVVGARTKSNNILEVY 1171
Query: 1568 QVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1627
LGIEA R ++ E+ V++ +G+ V++RH+ LL MT++G ++ ITRHG+ +
Sbjct: 1172 VTLGIEAARTTIMNEITDVMEGHGMSVDHRHIMLLASQMTSRGEVLGITRHGLAKMRESV 1231
Query: 1628 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
SFE+T D L DAA + + D + GVSE II+G +GTG F L+
Sbjct: 1232 FNLASFEKTADHLFDAAYYGQTDSIDGVSERIILGMPAAIGTGLFKLI 1279
>gi|157126795|ref|XP_001660950.1| DNA-directed RNA polymerase II largest subunit [Aedes aegypti]
gi|108873160|gb|EAT37385.1| AAEL010617-PA [Aedes aegypti]
Length = 1298
Score = 111 bits (277), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Query: 1508 VYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF 1567
V LPQ S+ I + +S + + L +G L V++ V RT SN+I E++
Sbjct: 1116 VVAGLPQV-SRAVIAVDDS---RGPPTYKLCVEGYGLRDVMATYGVVGARTKSNNILEVY 1171
Query: 1568 QVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1627
LGIEA R ++ E+ V++ +G+ V++RH+ LL MT++G ++ ITRHG+ +
Sbjct: 1172 VTLGIEAARTTIMNEITDVMEGHGMSVDHRHIMLLASQMTSRGEVLGITRHGLAKMRESV 1231
Query: 1628 LMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
SFE+T D L DAA + + D + GVSE II+G +GTG F L+
Sbjct: 1232 FNLASFEKTADHLFDAAYYGQTDSIDGVSERIILGMPAAIGTGLFKLI 1279
>gi|401623626|gb|EJS41719.1| rpo31p [Saccharomyces arboricola H-6]
Length = 1460
Score = 111 bits (277), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 111/201 (55%), Gaps = 18/201 (8%)
Query: 1476 AVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
A + E+D+F R + + D+ ++G+ I + +++ D+ KR ++ E
Sbjct: 1248 AKEPSENDVFYRMQQLRRAIPDVVVKGLPDISRAVINI--RDNGKRELLVE--------- 1296
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
G L V+ V +T +N + E+F VLGIEA R S+ +E+N + +G+ V
Sbjct: 1297 ------GYGLRDVMCTDGVIGSKTTTNHVLEVFSVLGIEAARYSIVREINYTMSNHGMSV 1350
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + G
Sbjct: 1351 DPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEG 1410
Query: 1655 VSENIIMGQLPRMGTGCFDLL 1675
VSE II+GQ +GTG F ++
Sbjct: 1411 VSECIILGQTMSIGTGSFKVV 1431
>gi|67612875|ref|XP_667260.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium hominis
TU502]
gi|54658380|gb|EAL37032.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium hominis]
Length = 1869
Score = 110 bits (276), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 89/145 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G L+K++ + T SN + E+ +VLGIEA RK + +E+ + Y + +
Sbjct: 1687 YSLAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARKVIIQEVQKCMDAYSMDI 1746
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ LL D+MT +G ++ I+R GI + T LM SFEET + L +AA DP+ G
Sbjct: 1747 DLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEETNEHLFEAAFQNRVDPVFG 1806
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSE +IMG+ ++GTG FD+L ++
Sbjct: 1807 VSECVIMGKPIKIGTGSFDILYNSP 1831
>gi|219852751|ref|YP_002467183.1| DNA-directed RNA polymerase subunit A'' [Methanosphaerula palustris
E1-9c]
gi|219547010|gb|ACL17460.1| DNA-directed RNA polymerase, subunit A'' [Methanosphaerula palustris
E1-9c]
Length = 395
Score = 110 bits (276), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 18/185 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++ +QGI+ I +V ++ ESGE+ +L T+G++L V
Sbjct: 217 AEHVRNVIVQGIDDIERV------------VVRKESGEY------ILYTEGSNLKDVFEV 258
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI QVLGIEA R ++ E + L G+ V+ RH+ L+ D+M G
Sbjct: 259 AGVDTSRTRTNNISEISQVLGIEAARNAIIAEALSTLGEQGIRVDVRHIMLVSDMMCMDG 318
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI + L R +FE TV+ L+DAA E D + GV+EN+I+GQ ++GTG
Sbjct: 319 EVKQIGRHGIAGEKESVLSRAAFEVTVNHLLDAAVANEVDELNGVTENVIVGQPIQLGTG 378
Query: 1671 CFDLL 1675
L+
Sbjct: 379 DVKLI 383
>gi|150951372|ref|XP_001387687.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
stipitis CBS 6054]
gi|149388539|gb|EAZ63664.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
stipitis CBS 6054]
Length = 1448
Score = 110 bits (276), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 87/139 (62%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V+S + +T +N + E+F+VLGIEA R S+ KE++ + +G+ V+
Sbjct: 1283 LLVEGYGLKDVMSTDGIVGTKTTTNHVLEVFEVLGIEAARASIIKEIDYTMSNHGMSVDP 1342
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA ++D + GVS
Sbjct: 1343 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKSDKIEGVS 1402
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F L+
Sbjct: 1403 ECIILGQSMSIGTGSFKLV 1421
>gi|317419477|emb|CBN81514.1| DNA-directed RNA polymerase III subunit RPC1 [Dicentrarchus labrax]
Length = 1390
Score = 110 bits (276), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K + + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVARAVIHIDEQSGKNK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+ RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+M+ KG ++
Sbjct: 1242 NGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEIL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A+K ++ PL
Sbjct: 1362 LLHKADKDPSPVKRPL 1377
>gi|150399425|ref|YP_001323192.1| DNA-directed RNA polymerase subunit A'' [Methanococcus vannielii SB]
gi|1173130|sp|P14247.2|RPOA2_METVS RecName: Full=DNA-directed RNA polymerase subunit A''
gi|505293|emb|CAA51729.1| DNA-directed RNA polymerase [Methanococcus vannielii]
gi|150012128|gb|ABR54580.1| DNA-directed RNA polymerase, subunit A'' [Methanococcus vannielii SB]
Length = 386
Score = 110 bits (276), Expect = 6e-21, Method: Composition-based stats.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K I +++L ++G++L +V VD +T +N+I EI V
Sbjct: 215 IHLKGVPNIKRVIIR-----KEIDEYVLYSEGSNLKEVFEIDGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LG+EA R ++ +EM+ L GL V+ RHL ++ D+MT G + I RHGI + L
Sbjct: 270 LGVEAARNAIIREMDATLGNQGLTVDKRHLMMVADLMTTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
R +FEETV L A+ D + GV ENII+G+ MGTGC ++ + E
Sbjct: 330 RAAFEETVKHLYSASMRGYVDDLSGVVENIIVGKPISMGTGCINVCIKKE 379
>gi|316997009|dbj|BAJ52632.1| RNA polymerase III largest subunit [Paramecium tetraurelia]
Length = 899
Score = 110 bits (276), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 85/143 (59%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L G ++L ++D RT SN I EI LGIEA R+S+ E+ T +Q + + ++
Sbjct: 738 LFASGIGFKEILRLDNIDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISIDI 797
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL ++MT KG ++ TR GI++ ALM SFE+T+DV +AA + D M G S
Sbjct: 798 RHILLLAELMTFKGRILGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNGAS 857
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAE 1679
+ +I+GQ GTG FDL+ +
Sbjct: 858 QRVIIGQNVPQGTGMFDLMFPVK 880
>gi|385805644|ref|YP_005842042.1| DNA-directed RNA polymerase subunit A'' [Fervidicoccus fontis Kam940]
gi|383795507|gb|AFH42590.1| DNA-directed RNA polymerase subunit A'' [Fervidicoccus fontis Kam940]
Length = 409
Score = 110 bits (276), Expect = 6e-21, Method: Composition-based stats.
Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 1/170 (0%)
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K+ II + GE ++++ TDG++L +VL + VDP RT +N + E VLGIEA RK
Sbjct: 230 KRAIIQSRRGE-DGREEYVIVTDGSNLEQVLKVKGVDPTRTRTNSVYETMMVLGIEAARK 288
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
+ E+ VL+ GL V+ RH+ L+ D+MT G + I RHG++ + L R +FE T
Sbjct: 289 VIINEIMNVLREQGLDVDVRHVYLVADIMTQTGVVRQIGRHGVSGEKESFLARAAFEMTT 348
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 1687
L +A+ + D ++GV+EN+I+GQ+ +GTG +L KD +I
Sbjct: 349 KHLFEASTQGKTDELKGVTENVIVGQVIPVGTGMIELYFTPHIEKDKRQI 398
>gi|304315187|ref|YP_003850334.1| DNA-directed RNA polymerase, subunit A'' [Methanothermobacter
marburgensis str. Marburg]
gi|302588646|gb|ADL59021.1| DNA-directed RNA polymerase, subunit A'' [Methanothermobacter
marburgensis str. Marburg]
Length = 451
Score = 110 bits (275), Expect = 7e-21, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 91/147 (61%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W++ T+G++L VL E VD VRT +NDI EI VLGIEA R ++ E ++ GL
Sbjct: 305 EWVIHTEGSNLGAVLKEEGVDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLT 364
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ L+ D+MTA G + +I RHGI+ + L R SFEET L+ A+ E D +
Sbjct: 365 VDIRHIMLVADMMTADGSVKSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHLT 424
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEK 1680
G+ ENII+GQ +GTG +++ K
Sbjct: 425 GIIENIIIGQPIPLGTGSVSVVMKERK 451
>gi|410895601|ref|XP_003961288.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Takifugu rubripes]
Length = 1390
Score = 110 bits (275), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + +SG K + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVARAVIHIDE----------QSGRNK----YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+ RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+M+ KG ++
Sbjct: 1242 NGSRTTSNNTFEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEIL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL AEK + PL
Sbjct: 1362 LLHKAEKEPSPAKRPL 1377
>gi|315230007|ref|YP_004070443.1| DNA-directed RNA polymerase subunit A'' [Thermococcus barophilus MP]
gi|315183035|gb|ADT83220.1| DNA-directed RNA polymerase subunit A'' [Thermococcus barophilus MP]
Length = 394
Score = 110 bits (275), Expect = 7e-21, Method: Composition-based stats.
Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 30/244 (12%)
Query: 1443 FLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT---- 1498
F+ I+ L L +I +S + E VD + +R +A LSD+
Sbjct: 161 FVVEIDPERLERSGLTMEKIKKKLESSFKTAEFEVDGYT--LIVRPKKAEKLSDLRRIAE 218
Query: 1499 ------LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
L+G+ +GK II + G+ ++++ T+G++ +VL
Sbjct: 219 KVKSHRLKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQVLKVPG 260
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VDP RT +N+I EI +VLGIEA R ++ +E+ +Q GL V+ RH+ L+ D+MT G +
Sbjct: 261 VDPTRTRTNNIHEIAEVLGIEAARNAIIEEIVNTMQEQGLEVDVRHIMLVADIMTLDGIV 320
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
I RHG+ L R +FE TV L +AA E DP+ GV EN+++GQ +GTG
Sbjct: 321 RPIGRHGVVGDPASVLARAAFEITVQHLFEAAERGEVDPLNGVVENVLIGQPVPVGTGIV 380
Query: 1673 DLLL 1676
L +
Sbjct: 381 RLAM 384
>gi|403223773|dbj|BAM41903.1| DNA-directed RNA polymerase III largest subunit RPC1 [Theileria
orientalis strain Shintoku]
Length = 1643
Score = 110 bits (275), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 88/148 (59%)
Query: 1531 AIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFY 1590
A ++ + +G L +V+ V SN + E+ +VLGIEA R + E+ + Y
Sbjct: 1496 AGPNYQIAVEGYGLKEVMGADGVLWSSVKSNHVFEVAEVLGIEAARSVIISEIQKCMDAY 1555
Query: 1591 GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEAD 1650
+ ++ R++ LL DVMT KG ++ I RHGI + + LM SFE+T D L DAA H D
Sbjct: 1556 SIDIDGRYMKLLADVMTFKGQVIGINRHGIRKMRSSTLMLSSFEQTNDHLFDAAVHHRKD 1615
Query: 1651 PMRGVSENIIMGQLPRMGTGCFDLLLDA 1678
P++GVSE IIMG+ +GTG FD+++ A
Sbjct: 1616 PIKGVSECIIMGKPISLGTGSFDIMMAA 1643
>gi|325185155|emb|CCA19646.1| DNAdirected RNA polymerase III largest subunit puta [Albugo laibachii
Nc14]
gi|325188545|emb|CCA23078.1| RNA polymerase III putative [Albugo laibachii Nc14]
Length = 1543
Score = 110 bits (275), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 108/200 (54%), Gaps = 14/200 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEF--KAIADWLLETDGTSLMKVLSER 1551
L ++ +QGI PQ + + +I E G+ + L +G L +V+
Sbjct: 1352 LPNVIVQGI----------PQVN--RAVINYEEGKTDSHGVRTHHLLVEGYGLAEVMGVP 1399
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
+D + T SN I E+ + LGIEA R+ + E++ ++ YG+ ++ RHL LL D+MT KG
Sbjct: 1400 GIDGLNTRSNHIIEVEKTLGIEAARELISSEVSYIMSAYGIGIDRRHLMLLSDIMTFKGE 1459
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
++ ITR GI + LM SFE+T D L DAA H+ D + GVSE IIMG +GTG
Sbjct: 1460 VLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIPIGTGI 1519
Query: 1672 FDLLLDAEKCKDGIEIPLAT 1691
F LL EK K PL T
Sbjct: 1520 FKLLRRVEKPKIRHHTPLLT 1539
>gi|390960611|ref|YP_006424445.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. CL1]
gi|390518919|gb|AFL94651.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. CL1]
Length = 391
Score = 110 bits (275), Expect = 8e-21, Method: Composition-based stats.
Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 30/245 (12%)
Query: 1443 FLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT---- 1498
F+ I+ L L RI +S + E +D + +R + LSD+
Sbjct: 159 FIVDIDPERLEKAGLDMERIQRKLESSFKSAEFEIDGYT--LIMRPKKVGKLSDLRRLAE 216
Query: 1499 ------LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
L+G+ +GK II + G+ ++++ T+G++ +VL
Sbjct: 217 KVKKHRLKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQVLKVPG 258
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VDP RT +N+I EI +VLGIEA R ++ +E+ ++ GL V+ RH+ L+ D+MT G +
Sbjct: 259 VDPTRTRTNNIWEIAEVLGIEAARNAIIEEIVNTMREQGLEVDVRHIMLVADMMTLDGVI 318
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+ I RHGI + L R +FE T L +AA E DP+ GV EN+++GQ +GTG
Sbjct: 319 LPIGRHGIVGEKASVLARAAFEITTQHLFEAAERGEVDPLNGVVENVLIGQPVPVGTGMV 378
Query: 1673 DLLLD 1677
L ++
Sbjct: 379 KLAMN 383
>gi|126178252|ref|YP_001046217.1| DNA-directed RNA polymerase, subunit A'' [Methanoculleus marisnigri
JR1]
gi|126178265|ref|YP_001046230.1| DNA-directed RNA polymerase, subunit A'' [Methanoculleus marisnigri
JR1]
gi|125861046|gb|ABN56235.1| SSU ribosomal protein S2P [Methanoculleus marisnigri JR1]
gi|125861059|gb|ABN56248.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
Length = 390
Score = 110 bits (275), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 5/157 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+R+++ + G +++L T+G++L V VD RT SN+I EI VLGIEA R +
Sbjct: 231 ERVVVRKEG-----GEYILYTEGSNLKDVFEVEGVDTSRTRSNNISEIADVLGIEAGRNA 285
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E + L G+ V+ RH+ L+ D+M +G + I RHGI + L R +FE TV+
Sbjct: 286 IIQEALSTLNEQGIGVDVRHIMLVADMMCMEGEVKQIGRHGIAGEKESVLSRAAFEVTVN 345
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
L+DAA E D + GV+EN+I+GQ ++GTG L+
Sbjct: 346 HLLDAAIANEVDELNGVTENVIVGQPIQLGTGDVKLI 382
>gi|344305554|gb|EGW35786.1| DNA-directed RNA polymerase III subunit C1 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1445
Score = 110 bits (274), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 86/139 (61%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V+S V +T +N + E+F++LGIEA R S+ KE++ + +G+ V+
Sbjct: 1281 LLVEGYGLKDVMSTDGVVGTKTTTNHVLEVFEILGIEAARSSIIKEIDYTMSNHGMSVDP 1340
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + D + GVS
Sbjct: 1341 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVS 1400
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F L+
Sbjct: 1401 ECIILGQTMSIGTGSFKLV 1419
>gi|297686603|ref|XP_002820840.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1, partial
[Pongo abelii]
Length = 518
Score = 110 bits (274), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 324 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 369
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 370 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 429
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 430 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 489
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 490 LLHKADRDPNPPKRPL 505
>gi|302808041|ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 110 bits (274), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 18/183 (9%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
NML + ++GI + ++ +I E G++ L +GT+L V+
Sbjct: 1210 NMLPKVIVKGIPTV------------ERAVINQEKGKYN------LLVEGTNLKAVMGTE 1251
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
VD T SN I E +VLGIEA R + KE+ + +G+ ++ RH+ LL DVMT +G
Sbjct: 1252 GVDGRETTSNHIFETVEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYRGE 1311
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
++ ITR G+ + LM SFE+T D L A+ H D + GVSE IIMG +GTG
Sbjct: 1312 ILGITRFGMAKMKDSVLMLASFEKTTDHLFAASVHGRTDQIEGVSECIIMGIPMPLGTGL 1371
Query: 1672 FDL 1674
F +
Sbjct: 1372 FKV 1374
>gi|190347890|gb|EDK40245.2| DNA-directed RNA polymerase III largest subunit [Meyerozyma
guilliermondii ATCC 6260]
Length = 1379
Score = 110 bits (274), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 87/139 (62%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V+S + +T +N + E+F+VLGIEA R S+ E++ + +G+ V+
Sbjct: 1214 LLVEGYGLKQVMSTDGIIGTKTTTNHVLEVFEVLGIEAARASIIGEIDYTMSKHGMSVDP 1273
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVM+ KG ++ ITR G+++ L SFE+T D L DAA + + D + GVS
Sbjct: 1274 RHIQLLGDVMSYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDQIEGVS 1333
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F L+
Sbjct: 1334 ECIILGQTMSIGTGAFQLV 1352
>gi|432329278|ref|YP_007247422.1| DNA-directed RNA polymerase, subunit A'' [Aciduliprofundum sp.
MAR08-339]
gi|432135987|gb|AGB05256.1| DNA-directed RNA polymerase, subunit A'' [Aciduliprofundum sp.
MAR08-339]
Length = 516
Score = 110 bits (274), Expect = 1e-20, Method: Composition-based stats.
Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 16/184 (8%)
Query: 1497 MTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPV 1556
+TL+GI+ I + + Q +S +W++ T G++L VL +VD
Sbjct: 348 LTLRGIKGISRAIVRKSQDNS----------------EWVIYTQGSNLGDVLDIEEVDAA 391
Query: 1557 RTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAIT 1616
RT +N+I EI VLG+EA R ++ +E L GL V+ RH+ L+ D MT G + AI
Sbjct: 392 RTRTNNIIEIADVLGVEAARNAIIEEALNTLHQQGLNVDIRHIMLVADTMTYNGTVEAIG 451
Query: 1617 RHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
RHGI + L R +FE T L+ A E D +RGV+ENII+GQ +GTG L+
Sbjct: 452 RHGIAGEKESVLARAAFEITSKHLLTAGILGEEDQLRGVAENIIVGQPVTLGTGAVTLVY 511
Query: 1677 DAEK 1680
+K
Sbjct: 512 KPKK 515
>gi|320581578|gb|EFW95798.1| DNA-directed RNA polymerase III subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 1469
Score = 110 bits (274), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 19/221 (8%)
Query: 1456 TLQFIRIMNSDDSKMQDEEDAVDKME-DDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLP 1513
T + R +S +S + + D +++E +F R + +L+ + ++G+ I + +++
Sbjct: 1237 TGKTARTASSRESSVVKDADERERLERTSLFFRMQQLRRVLTKVVVKGLPDISRAVINV- 1295
Query: 1514 QTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIE 1573
+ D KK +++ G KA+ + TDG V++ R T +N + EIF VLGIE
Sbjct: 1296 KDDGKKELLVEGYG-LKAV----MATDG-----VVAHR------TKTNHVLEIFDVLGIE 1339
Query: 1574 AVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1633
A R S+ E++ + +G+ V+ RH+ LL DVMT KG ++ ITR G+ + L SF
Sbjct: 1340 AARASIISEIDYTMGSHGMAVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASF 1399
Query: 1634 EETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
E+T D L DAA + + D + GVSE II+GQ +GTG F L
Sbjct: 1400 EKTTDHLFDAAFYMKKDLVEGVSERIILGQTMSIGTGAFKL 1440
>gi|333986473|ref|YP_004519080.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium sp. SWAN-1]
gi|333824617|gb|AEG17279.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium sp. SWAN-1]
Length = 390
Score = 110 bits (274), Expect = 1e-20, Method: Composition-based stats.
Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 18/190 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A+ + D+ + G++ IGKV +I + G +W + T+G++L VL
Sbjct: 219 ADKVRDLQISGVKNIGKV-------------VIRKEG-----TEWAIHTEGSNLGAVLKM 260
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +NDI E+ +VLGIEA R ++ E + ++ GL V+ RH+ L+ D+MT+ G
Sbjct: 261 EGVDKTRTTTNDIHEVEKVLGIEAGRNAIIHEAQSTMEEQGLTVDVRHIMLVADMMTSDG 320
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ +I RHGI+ + L R SFEET L+ A+ E D + G+ ENII+GQ +GTG
Sbjct: 321 IVKSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTG 380
Query: 1671 CFDLLLDAEK 1680
+++ +K
Sbjct: 381 SVGVVMKDKK 390
>gi|291233819|ref|XP_002736852.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
155kDa-like [Saccoglossus kowalevskii]
Length = 322
Score = 110 bits (274), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
+ L+++ +QG+ ++ + +H+ D K + + L +G +L V++ R
Sbjct: 148 DTLANVVIQGVPSVTRAVIHI---DDKS-----------GVEKYKLLVEGDNLRAVIATR 193
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
V T SN+ E+ + LGIEA R+++ E+ + +G+ +++RH+ LL D+M KG
Sbjct: 194 GVKGTHTTSNNTVEVEKTLGIEAARQTIINEIQYTMVSHGMSIDHRHMMLLADLMAYKGE 253
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
++ ITR G+ + LM SFE+T D L DAA + + D + GVSE IIMG +GTG
Sbjct: 254 ILGITRFGLAKMKESVLMLASFEKTADHLFDAAYYGQKDAINGVSECIIMGIPMTIGTGL 313
Query: 1672 FDLL 1675
F LL
Sbjct: 314 FKLL 317
>gi|355712750|gb|AES04453.1| polymerase III polypeptide A, 155kDa [Mustela putorius furo]
Length = 526
Score = 110 bits (274), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 332 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 377
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 378 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 437
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 438 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 497
Query: 1674 LLLDAEK 1680
LL A++
Sbjct: 498 LLHKADR 504
>gi|146415288|ref|XP_001483614.1| DNA-directed RNA polymerase III largest subunit [Meyerozyma
guilliermondii ATCC 6260]
Length = 1379
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 87/139 (62%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V+S + +T +N + E+F+VLGIEA R S+ E++ + +G+ V+
Sbjct: 1214 LLVEGYGLKQVMSTDGIIGTKTTTNHVLEVFEVLGIEAARASIIGEIDYTMSKHGMSVDP 1273
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVM+ KG ++ ITR G+++ L SFE+T D L DAA + + D + GVS
Sbjct: 1274 RHIQLLGDVMSYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDQIEGVS 1333
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F L+
Sbjct: 1334 ECIILGQTMSIGTGAFQLV 1352
>gi|156841103|ref|XP_001643927.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156114557|gb|EDO16069.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 1460
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 86/143 (60%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V+ V +T +N + E+F VLGIEA R S+ E++ + +G+ V+
Sbjct: 1293 LLVEGYGLREVMCTDGVIGSKTTTNHVLEVFSVLGIEAARSSIIGEIDYTMSNHGMSVDP 1352
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + GVS
Sbjct: 1353 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVS 1412
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAE 1679
E II+GQ +GTG F +L E
Sbjct: 1413 ECIILGQTMSIGTGAFKILKSTE 1435
>gi|406607118|emb|CCH41506.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 1457
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 1476 AVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
A + +E+++F R L +T++G I + +++ + D KK +++
Sbjct: 1246 AKEPLENELFFRMQHLRRALPGVTVKGFPDIARAVINV-RDDGKKELLV----------- 1293
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+G L V+ V +T +N I E++QVLGIEA R S+ E++ + +G+ V
Sbjct: 1294 -----EGYGLRDVMCTDGVIGTKTKTNHILEVWQVLGIEAARGSIINEIDYTMSNHGMSV 1348
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ LL DVM+ KG ++ ITR G+++ L SFE+T D L DA+ + ++D + G
Sbjct: 1349 DPRHIQLLGDVMSYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKSDAVEG 1408
Query: 1655 VSENIIMGQLPRMGTGCFDLL 1675
VSE II+GQ +GTG F L+
Sbjct: 1409 VSECIILGQTMAIGTGAFKLV 1429
>gi|397779349|ref|YP_006543822.1| DNA-directed RNA polymerase subunit A [Methanoculleus bourgensis MS2]
gi|396937851|emb|CCJ35106.1| DNA-directed RNA polymerase subunit A [Methanoculleus bourgensis MS2]
Length = 390
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 97/162 (59%), Gaps = 7/162 (4%)
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
R+++ + G +++L T+G++L V VD RT SN+I EI VLGIEA R ++
Sbjct: 232 RVVVRKEG-----GEYILYTEGSNLKDVFEVEGVDTTRTRSNNISEIADVLGIEAGRNAI 286
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
+E + L G+ V+ RH+ L+ D+M G + I RHGI + L R +FE TV+
Sbjct: 287 IQEALSTLNEQGIGVDVRHIMLVADMMCMDGEVKQIGRHGIAGEKESVLSRAAFEVTVNH 346
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKC 1681
L+DAA E D + GV+EN+I+GQ ++GTG D+ L A++
Sbjct: 347 LLDAAIANEVDELNGVTENVIVGQPIQLGTG--DVRLIAKRV 386
>gi|367014307|ref|XP_003681653.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
gi|359749314|emb|CCE92442.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
Length = 1460
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 1476 AVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
A + E+D+F R + L + ++G+ I + +++ + D+K+ +++
Sbjct: 1248 AKEPHENDVFFRMQQLRRSLPGIVVKGLPDISRAVINV-RDDTKRELLV----------- 1295
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+G L V+S V +T +N I E+F VLGIEA R S+ E++ + +G+ V
Sbjct: 1296 -----EGYGLRDVMSTDGVVGHKTATNHILEVFSVLGIEAARASIIGEIDYTMSNHGMSV 1350
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + G
Sbjct: 1351 DPRHIQLLGDVMTYKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKRDAVEG 1410
Query: 1655 VSENIIMGQLPRMGTGCFDLL 1675
VSE II+GQ +GTG F ++
Sbjct: 1411 VSECIILGQTMSIGTGAFKVI 1431
>gi|45358927|ref|NP_988484.1| DNA-directed RNA polymerase subunit A'' [Methanococcus maripaludis
S2]
gi|74553842|sp|Q6LXI7.1|RPOA2_METMP RecName: Full=DNA-directed RNA polymerase subunit A''
gi|45047793|emb|CAF30920.1| RNA polymerase, A/beta'/A' subunit [Methanococcus maripaludis S2]
Length = 386
Score = 109 bits (273), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K + +++L ++G+++ +V VD +T +N+I EI V
Sbjct: 215 IHLKGVQNIKRVIIR-----KEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ EM+ L GL V+ RHL ++ D+M G + I RHGI + L
Sbjct: 270 LGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
R +FEETV L A+ D + GV ENII+G+ MGTGC D+ +D
Sbjct: 330 RAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTGCIDICID 377
>gi|340624674|ref|YP_004743127.1| DNA-directed RNA polymerase subunit A'' [Methanococcus maripaludis
X1]
gi|339904942|gb|AEK20384.1| DNA-directed RNA polymerase subunit A'' [Methanococcus maripaludis
X1]
Length = 386
Score = 109 bits (273), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K + +++L ++G+++ +V VD +T +N+I EI V
Sbjct: 215 IHLKGVQNIKRVIIR-----KEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ EM+ L GL V+ RHL ++ D+M G + I RHGI + L
Sbjct: 270 LGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADIMCTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
R +FEETV L A+ D + GV ENII+G+ MGTGC D+ +D
Sbjct: 330 RAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTGCIDICID 377
>gi|440795837|gb|ELR16951.1| DNAdirected RNA polymerase subunit A [Acanthamoeba castellanii str.
Neff]
Length = 1230
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 1522 IITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEK 1581
+I + G A A + L +G +L+ V++ V RT SN I E+ LGIEA R ++
Sbjct: 1034 VINKKGS-GADARYNLLVEGYNLLSVMATPGVVGSRTTSNHIIEVMTTLGIEAARVTIMN 1092
Query: 1582 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1641
E+ ++ +G+ ++ RH+ LL D+M +G ++ ITRHGI++ + +M SFE+T D L
Sbjct: 1093 EIQYTMKEHGMNIDTRHVMLLADLMCFRGEILGITRHGIDKMNDSVMMLASFEKTTDHLF 1152
Query: 1642 DAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
+A+ HA D + GVSE+IIMG +GTG F LL
Sbjct: 1153 NASFHARQDTITGVSESIIMGIPIAVGTGLFKLL 1186
>gi|260946503|ref|XP_002617549.1| DNA-directed RNA polymerase III largest subunit [Clavispora
lusitaniae ATCC 42720]
gi|238849403|gb|EEQ38867.1| DNA-directed RNA polymerase III largest subunit [Clavispora
lusitaniae ATCC 42720]
Length = 1491
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 17/182 (9%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+ ++G+ I + +++ + DSKK +++ +G L V+S +
Sbjct: 1300 LPDVVIKGLPNISRAVINI-RDDSKKELLV----------------EGYGLKDVMSTDGI 1342
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T +N + E+++VLGIEA R S+ E++ + +G+ V+ RH+ LL DVMT KG ++
Sbjct: 1343 VGTKTSTNHVLEVYEVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKGEVL 1402
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+++ L SFE+T D L DAA + D + GVSE II+GQ +GTG F
Sbjct: 1403 GITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGAFK 1462
Query: 1674 LL 1675
L+
Sbjct: 1463 LV 1464
>gi|146098608|ref|XP_001468425.1| putative DNA-directed RNA polymerase III largest subunit [Leishmania
infantum JPCM5]
gi|134072793|emb|CAM71509.1| putative DNA-directed RNA polymerase III largest subunit [Leishmania
infantum JPCM5]
Length = 1590
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 96/162 (59%), Gaps = 5/162 (3%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L+ V+S VD VRT N + I + LGIEA R+++ KE+ ++LQ Y L ++
Sbjct: 1353 LLAEGAELLSVMSLPYVDGVRTTCNHVAVIERALGIEAARETIVKEITSILQAYSLNIDI 1412
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT++G ++ ITR+GI + + L SFE T + L +AA D VS
Sbjct: 1413 RHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTEREDVNLSVS 1472
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMMGGP 1697
E+II+G+ +GT F++LLD K I P + TG M P
Sbjct: 1473 ESIIIGKPIPLGTSSFNILLD----KGSIAPPGSNTGRMPSP 1510
>gi|145492039|ref|XP_001432018.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399125|emb|CAK64620.1| unnamed protein product [Paramecium tetraurelia]
Length = 1360
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 85/143 (59%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L G ++L ++D RT SN I EI LGIEA R+S+ E+ T +Q + + ++
Sbjct: 1199 LFASGIGFKEILRLDNIDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISIDI 1258
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL ++MT KG ++ TR GI++ ALM SFE+T+DV +AA + D M G S
Sbjct: 1259 RHILLLAELMTFKGRILGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNGAS 1318
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAE 1679
+ +I+GQ GTG FDL+ +
Sbjct: 1319 QRVIIGQNVPQGTGMFDLMFPVK 1341
>gi|74830400|emb|CAI39062.1| DNA-directed RNA polymerase III largest subunit [Paramecium
tetraurelia]
Length = 1368
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 85/143 (59%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L G ++L ++D RT SN I EI LGIEA R+S+ E+ T +Q + + ++
Sbjct: 1207 LFASGIGFKEILRLDNIDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISIDI 1266
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL ++MT KG ++ TR GI++ ALM SFE+T+DV +AA + D M G S
Sbjct: 1267 RHILLLAELMTFKGRILGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNGAS 1326
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAE 1679
+ +I+GQ GTG FDL+ +
Sbjct: 1327 QRVIIGQNVPQGTGMFDLMFPVK 1349
>gi|281204162|gb|EFA78358.1| RNA polymerase III [Polysphondylium pallidum PN500]
Length = 1393
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 107/189 (56%), Gaps = 18/189 (9%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N L ++ ++GI + +V +I ++G++K L +G L+ V++
Sbjct: 1211 NNLPNVIVRGISTVNRV------------VIDEKNGKYK------LLIEGYDLLHVMTTA 1252
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGH 1611
++ T SN + E+ + LGIEAVR+++ E+ ++ +G+ ++ RH+ LL D+M+ KG
Sbjct: 1253 GINGTHTNSNHMMEVEKYLGIEAVRQTIIDEIQMIMINHGMSIDSRHVMLLADLMSFKGE 1312
Query: 1612 LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGC 1671
++ ITR GI + LM SFE+T D L DAA H D + GVSE IIMG +GTG
Sbjct: 1313 ILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHRRQDDIVGVSECIIMGIPVPLGTGL 1372
Query: 1672 FDLLLDAEK 1680
F LL ++ K
Sbjct: 1373 FKLLYNSRK 1381
>gi|170039594|ref|XP_001847615.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863133|gb|EDS26516.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1303
Score = 109 bits (273), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+ L +G L V++ V RT SN+I E++ LGIEA R ++ E+ V++ +G+
Sbjct: 1142 PTYKLCVEGYGLRDVMATYGVVGARTKSNNILEVYVTLGIEAARTTIMNEITDVMEGHGM 1201
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V++RH+ LL MT++G ++ ITRHG+ + SFE+T D L DAA + + D +
Sbjct: 1202 SVDHRHIMLLASQMTSRGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDSI 1261
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAEKCK 1682
GVSE II+G +GTG F L+ + + K
Sbjct: 1262 DGVSERIILGMPAAIGTGLFKLIHNHTETK 1291
>gi|345489196|ref|XP_001602571.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Nasonia
vitripennis]
Length = 1355
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 105/187 (56%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ ++GI ++ + +H + K R + L +G ++ V++ V
Sbjct: 1162 IPNVIVKGIASVSRAVIHNDDSSGKTR--------------YKLFVEGDNMRDVMATLGV 1207
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+F+ LGIEA R ++ E+ V++ +G+ ++ RH L+ D+MT++G ++
Sbjct: 1208 KGPKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVL 1267
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + L SFE+T D L DAA + + D + GVSE+IIMG +GTG F
Sbjct: 1268 GITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQKDAISGVSESIIMGIPVPVGTGIFK 1327
Query: 1674 LLLDAEK 1680
LL +EK
Sbjct: 1328 LLHKSEK 1334
>gi|242398381|ref|YP_002993805.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sibiricus MM
739]
gi|242264774|gb|ACS89456.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sibiricus MM
739]
Length = 397
Score = 109 bits (272), Expect = 1e-20, Method: Composition-based stats.
Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 18/186 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A+ + L+G+ +GK +I + G+ ++++ T+G++ +VL
Sbjct: 219 ADKVKKHRLKGLSGVGKT-------------VIRKEGD-----EYVIYTEGSNFKQVLKV 260
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VDP RT +N+I EI QVLGIEA R ++ +E+ +Q GL V+ RH+ L+ D+MT G
Sbjct: 261 PGVDPTRTKTNNIHEIAQVLGIEAARNAIIEEIVNTMQEQGLEVDVRHIMLVADMMTIDG 320
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI L R +FE TV L+ AA E DP+ GV EN+++GQ +GTG
Sbjct: 321 VVRPIGRHGIVGTKASVLARAAFEITVQHLLQAAERGELDPLNGVVENVLIGQPVPVGTG 380
Query: 1671 CFDLLL 1676
L +
Sbjct: 381 IVRLAM 386
>gi|417406396|gb|JAA49858.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1390
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 1362 LLHKADK 1368
>gi|414586606|tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 336
Score = 109 bits (272), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 92/152 (60%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+R++I E A + L +GT+L+ V+ VD +T SN I E Q LGIEA R+S
Sbjct: 162 ERVVIDEVKVNNATERYQLLVEGTNLLAVMGTPGVDARKTKSNHIMETNQTLGIEAARRS 221
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ E+ ++ +G+ ++ RH+ LL D+MT KG ++ ITR+GI + + LM SFE+T +
Sbjct: 222 IIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAE 281
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
L +A+ D + GVSE IIMG ++GTG
Sbjct: 282 HLFNASYSGRQDQIEGVSECIIMGIPMQLGTG 313
>gi|307353874|ref|YP_003894925.1| DNA-directed RNA polymerase subunit A'' [Methanoplanus petrolearius
DSM 11571]
gi|307157107|gb|ADN36487.1| DNA-directed RNA polymerase, subunit A'' [Methanoplanus petrolearius
DSM 11571]
Length = 387
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 107/187 (57%), Gaps = 18/187 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++ +QGI+ I +V ++ E+GE+ +L T+G++L V
Sbjct: 216 AEYVRNVIVQGIDDIERV------------VVRKENGEY------ILYTEGSNLKGVFEV 257
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI +VLGIEA R ++ E + L+ G+ V+ RH+ L+ D+M +G
Sbjct: 258 DGVDTTRTRTNNIAEISEVLGIEAGRNAIIDEALSTLREQGIEVDVRHIMLVADMMCMEG 317
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI + L R +FE TV+ L+DAA E D + GV+EN+I+GQ ++GTG
Sbjct: 318 EVKQIGRHGIAGEKESVLSRAAFEVTVNHLLDAAVANEEDILEGVTENVIVGQPIQLGTG 377
Query: 1671 CFDLLLD 1677
L+ +
Sbjct: 378 DVKLIAN 384
>gi|156717272|ref|NP_001096178.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Xenopus
(Silurana) tropicalis]
gi|134025743|gb|AAI35597.1| polr3a protein [Xenopus (Silurana) tropicalis]
Length = 1390
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1195 LPKVVVQGIPEVARAVIHIDEQSGKEK--------------YKLLVEGDNLRSVMATHGV 1240
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1241 KGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVL 1300
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1301 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1360
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 1361 LLHKADK 1367
>gi|145509313|ref|XP_001440599.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407819|emb|CAK73202.1| unnamed protein product [Paramecium tetraurelia]
Length = 1353
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 85/143 (59%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L G ++L ++D RT SN I EI LGIEA R+S+ E+ T +Q + + ++
Sbjct: 1192 LFASGIGFKEILRLDNIDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISIDI 1251
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL ++MT KG ++ TR GI++ ALM SFE+T+DV +AA + D M G S
Sbjct: 1252 RHILLLAELMTFKGRILGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNGAS 1311
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAE 1679
+ +I+GQ GTG FDL+ +
Sbjct: 1312 QRVIIGQNVPQGTGMFDLMFPVK 1334
>gi|347522776|ref|YP_004780346.1| DNA-directed RNA polymerase subunit A'' [Pyrolobus fumarii 1A]
gi|343459658|gb|AEM38094.1| DNA-directed RNA polymerase, subunit A'' [Pyrolobus fumarii 1A]
Length = 424
Score = 109 bits (272), Expect = 2e-20, Method: Composition-based stats.
Identities = 63/140 (45%), Positives = 86/140 (61%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+R+++ ++ L T+G+SL +VL VDPV T +N+I EI QVLGIEA R +
Sbjct: 250 RRVVVQSVDLPDGRKEYYLLTEGSSLKEVLEVPGVDPVHTITNNIREIEQVLGIEAARYA 309
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ KEM VL GL V+ RHL L+ D+MT G + I RHG++ + L R +FE TV
Sbjct: 310 LIKEMKGVLDDQGLDVDIRHLILVADIMTQTGRVRQIGRHGVSGEKPSVLARAAFEMTVQ 369
Query: 1639 VLMDAAAHAEADPMRGVSEN 1658
L DAAA EAD + GV+EN
Sbjct: 370 HLFDAAARGEADRILGVTEN 389
>gi|335438709|ref|ZP_08561445.1| DNA-directed RNA polymerase subunit A [Halorhabdus tiamatea SARL4B]
gi|334890831|gb|EGM29091.1| DNA-directed RNA polymerase subunit A [Halorhabdus tiamatea SARL4B]
Length = 904
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+++L T+G++ VLS VD RT N+I EI+ LG+EA R+++ E L+ GL
Sbjct: 751 EFILYTEGSAFGDVLSIEGVDASRTTCNNIHEIYSNLGVEAAREAIIDETMNTLEEQGLD 810
Query: 1594 -VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
VN RHL L+ D+MT G + +I RHGI+ L R +FE TV L+DAA H E D +
Sbjct: 811 DVNVRHLMLVADIMTNNGVIESIGRHGISGSKDSVLARAAFEVTVSHLLDAAIHGEIDAL 870
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAEKCKD 1683
GV+EN+I+G+ ++GTG +L + +
Sbjct: 871 DGVTENVIVGKPIKLGTGDVNLRMGSHTGGG 901
>gi|316997003|dbj|BAJ52629.1| RNA polymerase III largest subunit [Stephanoeca diplocostata]
Length = 933
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 85/139 (61%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +GT + V+ R + +N + + LGIEA R ++ +E+ T + +G+ ++
Sbjct: 773 LLVEGTDMRAVMGTRGIVGTAVVTNHLMDAEACLGIEAARATIIREIQTTMSAHGMTIDS 832
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL D+MT KG ++ ITR GI + + M SFE+T D L DAA H +DP+ GVS
Sbjct: 833 RHVMLLADLMTFKGEILGITRFGIAKMKSSTFMLASFEKTTDHLFDAALHGNSDPISGVS 892
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+G+ ++GTG FDL+
Sbjct: 893 ECIILGKPMKIGTGLFDLV 911
>gi|161897750|gb|ABX80020.1| RNA polymerase 2 largest subunit [Diploscapter sp. JU359]
Length = 63
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/63 (77%), Positives = 56/63 (88%)
Query: 1547 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1606
VLSER +DP RT SNDICEIFQVLGIEAVRK++++EM+ V+ F G YVNYRHLALLCDVM
Sbjct: 1 VLSERHIDPKRTSSNDICEIFQVLGIEAVRKAIQREMHNVISFDGSYVNYRHLALLCDVM 60
Query: 1607 TAK 1609
TAK
Sbjct: 61 TAK 63
>gi|255717220|ref|XP_002554891.1| KLTH0F16236p [Lachancea thermotolerans]
gi|238936274|emb|CAR24454.1| KLTH0F16236p [Lachancea thermotolerans CBS 6340]
Length = 1460
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 87/139 (62%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V++ V ++T +N I E+F VLGIEA R S+ E++ + +G+ V+
Sbjct: 1292 LLVEGYGLREVMTTDGVIGMKTKTNHILEVFSVLGIEAARTSIVGEIDYTMSNHGMSVDP 1351
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + GVS
Sbjct: 1352 RHVQLLGDVMTYKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVS 1411
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F ++
Sbjct: 1412 ECIILGQTMSIGTGAFKVV 1430
>gi|84997133|ref|XP_953288.1| DNA-directed RNA polymerase III largest subunit (RPC homologue)
[Theileria annulata strain Ankara]
gi|65304284|emb|CAI76663.1| DNA-directed RNA polymerase III largest subunit (RPC homologue),
putative [Theileria annulata]
Length = 1648
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 1/161 (0%)
Query: 1517 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
S KR +I + ++ + +G L +V+ V SN + E+ +VLGIEA R
Sbjct: 1488 SIKRAVIKRESTPQG-PNYQIAVEGYGLQEVMGSYGVMSSAVKSNHVSEVAKVLGIEAAR 1546
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
+ E+ + Y + ++ R++ LL DVMT +G ++ I R GI + + ALM SFEET
Sbjct: 1547 SVIISEIQKCMDAYSIDIDCRYMKLLGDVMTFRGEVVGINRFGIQKMRSSALMLASFEET 1606
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
D L++AA H DP++GVSE IIMG+ +GTG FD+L+
Sbjct: 1607 NDHLLEAALHHRRDPIKGVSECIIMGKPISLGTGSFDILMS 1647
>gi|375083051|ref|ZP_09730089.1| DNA-directed RNA polymerase subunit A'' [Thermococcus litoralis DSM
5473]
gi|374742287|gb|EHR78687.1| DNA-directed RNA polymerase subunit A'' [Thermococcus litoralis DSM
5473]
Length = 394
Score = 109 bits (272), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 103/186 (55%), Gaps = 18/186 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A+ + L+G+ +GK II + G+ ++++ T+G++ +VL
Sbjct: 217 ADKVKKHRLKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQVLKV 258
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VDP RT +N+I EI +VLGIEA R ++ +E+ +Q GL V+ RH+ L+ D+MT G
Sbjct: 259 PGVDPTRTRTNNIHEIAEVLGIEAARNAIIEEITRTMQEQGLEVDVRHIMLVADMMTLDG 318
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHG+ L R +FE TV L+ AA E DP+ GV EN+++GQ +GTG
Sbjct: 319 IVRPIGRHGVVGTKASVLARAAFEITVQHLLQAAERGEVDPLNGVVENVLIGQPVPVGTG 378
Query: 1671 CFDLLL 1676
L +
Sbjct: 379 IVRLAM 384
>gi|367004166|ref|XP_003686816.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
gi|357525118|emb|CCE64382.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
Length = 1459
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 86/139 (61%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V+ V +T +N I EIF VLGIEA R S+ E++ + +G+ V+
Sbjct: 1291 LLVEGYGLRDVMCTDGVIGTKTSTNHILEIFNVLGIEAARSSIVGEIDYTMSNHGMSVDP 1350
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D ++GVS
Sbjct: 1351 RHIQLLGDVMTFKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDEVKGVS 1410
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F+++
Sbjct: 1411 ECIILGQTMSIGTGSFNVV 1429
>gi|374629650|ref|ZP_09702035.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
gi|373907763|gb|EHQ35867.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
Length = 388
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 110/190 (57%), Gaps = 20/190 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++ +QGI+ I +V ++ E+GE+ +L T+G+++ V
Sbjct: 216 AEYVRNVIVQGIDDIERV------------VVRKENGEY------ILYTEGSNIKGVFEV 257
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI +VLGIEA R ++ E + L+ G+ V+ RH+ L+ D+M +G
Sbjct: 258 EGVDTSRTRTNNIAEISEVLGIEAGRNAIIDEALSTLREQGIQVDVRHIMLVADMMCMEG 317
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI + L R +FE TV+ L+DAA E D + GV+EN+I+GQ ++GTG
Sbjct: 318 EVKQIGRHGIAGEKESVLSRAAFEVTVNHLLDAAIANEEDILEGVTENVIVGQPIQLGTG 377
Query: 1671 CFDLLLDAEK 1680
D+ L A+K
Sbjct: 378 --DVKLIAKK 385
>gi|431904080|gb|ELK09502.1| DNA-directed RNA polymerase III subunit RPC1 [Pteropus alecto]
Length = 1375
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 15/187 (8%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + KK ++ E G +L V++ V
Sbjct: 1182 LPKVVVQGIPEVSRAVIHIDEQSGKKYKLLVE---------------GDNLRAVMATHGV 1226
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1227 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1286
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1287 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1346
Query: 1674 LLLDAEK 1680
LL A++
Sbjct: 1347 LLHKADR 1353
>gi|432923404|ref|XP_004080458.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Oryzias
latipes]
Length = 1390
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K + + L +G ++ V++ V
Sbjct: 1196 LPKVVVQGIPEVARAVIHIDEQSGKNK--------------YKLLVEGDNMRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+ RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+M+ KG ++
Sbjct: 1242 NGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEIL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A+K + PL
Sbjct: 1362 LLHKADKDPTPVTRPL 1377
>gi|159040773|ref|YP_001540025.1| DNA-directed RNA polymerase subunit A'' [Caldivirga maquilingensis
IC-167]
gi|157919608|gb|ABW01035.1| DNA-directed RNA polymerase, subunit A'' [Caldivirga maquilingensis
IC-167]
Length = 388
Score = 108 bits (271), Expect = 2e-20, Method: Composition-based stats.
Identities = 76/216 (35%), Positives = 121/216 (56%), Gaps = 14/216 (6%)
Query: 1470 MQDEEDAVDKMEDDMFLRCIEANMLS-DMTLQGIEAIGKVYMHLPQTD-------SKKRI 1521
+ D + A+D+++ +E N +S + Q + A+ K+ + QT K +
Sbjct: 177 VNDVKKALDRIKGKAGEITVEGNSISVTVNAQEVSALKKMRDKILQTKVAGIRGIKKALV 236
Query: 1522 IITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEK 1581
+ T++ E+ ++ T+GT+L VL +VD RT S+DI E+ +VLGIEA R + +
Sbjct: 237 MKTDNNEY------VIYTEGTNLEAVLLLDEVDSTRTISHDIHEVAEVLGIEAARTMIMR 290
Query: 1582 EMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1641
E+ VL GL V+ RHL ++ DVMT G + I RHG+ Q L R +FE TV L+
Sbjct: 291 ELKAVLDDQGLDVDTRHLMMVADVMTWDGKVRQIGRHGVAGQKVSPLARAAFEVTVKNLI 350
Query: 1642 DAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
+AA E++ +GV ENII G+ +GTG +L+L+
Sbjct: 351 EAAYMGESEKFKGVVENIISGRYVPIGTGYVELMLE 386
>gi|389603516|ref|XP_001564320.2| putative DNA-directed RNA polymerase III largest subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|322504664|emb|CAM38379.2| putative DNA-directed RNA polymerase III largest subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1581
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 109/209 (52%), Gaps = 17/209 (8%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L+ V+S VD VRT N + + +VLGIEA R+++ KE+ ++LQ Y L ++
Sbjct: 1347 LLAEGAELLSVMSLPYVDGVRTTCNHVAVVERVLGIEAARETIVKEITSILQAYSLSIDI 1406
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT++G ++ ITR+GI + + L SFE T + L +AA D VS
Sbjct: 1407 RHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTEREDVNLSVS 1466
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--TGMMGGPAGMFFGSAATPSSMIHN 1714
E II+G+ +GT F++LLD G P TG M P+ +A +S
Sbjct: 1467 ECIIIGKPIPLGTSSFNILLD-----KGSIAPFGSNTGRM--PSSQASANAVATAS---- 1515
Query: 1715 PLQTPHNTSLTNATHQSRDKAFAPSELFL 1743
P T A S+ P E+FL
Sbjct: 1516 ----PSPGKATAAGTHSKKVELTPKEVFL 1540
>gi|156370189|ref|XP_001628354.1| predicted protein [Nematostella vectensis]
gi|156215328|gb|EDO36291.1| predicted protein [Nematostella vectensis]
Length = 1398
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 11/196 (5%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + ++G + + + +H+ + S+ GE + L +G L V+S V
Sbjct: 1196 LPGVLIKGYKNVTRAIIHIDEEQSR-------GGE----EHYKLLVEGDDLQAVISTMGV 1244
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
T SN+ E+ +VLGIEA R+++ E+ ++ +G+ ++ RH+ LL ++M KG ++
Sbjct: 1245 KGNGTTSNNTIEVERVLGIEAARQTIMNEIIYTMKNHGMSIDVRHVMLLAELMAFKGEIL 1304
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITRHG+ + LM SFE T D L +AA H DP+ GVSE IIMG +GTG F
Sbjct: 1305 GITRHGLAKMKESVLMLASFERTADHLFEAALHGRKDPIDGVSECIIMGMPMNIGTGMFK 1364
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL + D PL
Sbjct: 1365 LLHKPTRSGDPSRRPL 1380
>gi|147921533|ref|YP_684651.1| DNA-directed RNA polymerase subunit A'' [Methanocella arvoryzae
MRE50]
gi|110620047|emb|CAJ35325.1| DNA-directed RNA polymerase, subunit A2 [Methanocella arvoryzae
MRE50]
Length = 384
Score = 108 bits (271), Expect = 2e-20, Method: Composition-based stats.
Identities = 63/142 (44%), Positives = 91/142 (64%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
++++ T G+ L KV+ VDP RT +N+I EI +VLGIEA R ++ KE L GL
Sbjct: 235 EYVIYTQGSVLKKVIQFDGVDPARTGTNNINEIAEVLGIEAARNAIIKETLDTLSEQGLT 294
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ L+ D+MT G + I RHGI+ + L R +FE TV+ L+DAA E D +
Sbjct: 295 VDIRHIMLVADMMTIDGEVKQIGRHGISGEKASVLSRAAFEVTVNHLLDAAVAGEVDELT 354
Query: 1654 GVSENIIMGQLPRMGTGCFDLL 1675
GV+EN+I+GQ ++GTG +LL
Sbjct: 355 GVTENVIVGQPIQLGTGDVELL 376
>gi|15679065|ref|NP_276182.1| DNA-directed RNA polymerase subunit A'' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6685899|sp|O27126.1|RPOA2_METTH RecName: Full=DNA-directed RNA polymerase subunit A''
gi|2622151|gb|AAB85543.1| DNA-dependent RNA polymerase, subunit A'' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 451
Score = 108 bits (271), Expect = 2e-20, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 91/147 (61%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W++ T+G++L VL E VD VRT +NDI EI VLGIEA R ++ E ++ GL
Sbjct: 305 EWVIHTEGSNLGAVLKEEGVDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLT 364
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ L+ D+MTA G + +I RHGI+ + L R SFEET L+ A+ E D +
Sbjct: 365 VDIRHIMLVADMMTADGSVKSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHLT 424
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEK 1680
G+ ENII+GQ +GTG +++ K
Sbjct: 425 GIIENIIIGQPIPLGTGSVSVVMKERK 451
>gi|71029280|ref|XP_764283.1| DNA-directed RNA polymerase III largest subunit [Theileria parva
strain Muguga]
gi|68351237|gb|EAN32000.1| DNA-directed RNA polymerase III largest subunit, putative [Theileria
parva]
Length = 1617
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Query: 1515 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1574
+ S KR +I + ++ + +G L +V+ V SN + E+ +VLGIEA
Sbjct: 1455 SKSVKRAVIKRESTPQG-PNYQIAVEGYGLQEVMGCYGVMSSAVKSNHVAEVAKVLGIEA 1513
Query: 1575 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1634
R + E+ + Y + ++ R++ LL DVMT +G ++ I R GI + + ALM SFE
Sbjct: 1514 ARSVIISEIQRCMDAYSIDIDCRYMKLLGDVMTFRGEVVGINRFGIQKMRSSALMLASFE 1573
Query: 1635 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
ET D L++AA H DP++GVSE IIMG+ +GTG FD+L+
Sbjct: 1574 ETNDHLLEAALHHRRDPIKGVSECIIMGKPISLGTGSFDILMS 1616
>gi|336476454|ref|YP_004615595.1| DNA-directed RNA polymerase subunit A'' [Methanosalsum zhilinae DSM
4017]
gi|335929835|gb|AEH60376.1| DNA-directed RNA polymerase, subunit A'' [Methanosalsum zhilinae DSM
4017]
Length = 385
Score = 108 bits (271), Expect = 2e-20, Method: Composition-based stats.
Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 18/180 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + +TL+GIE I KR++I + G+ ++ L T+G+ L V+
Sbjct: 212 AKKVHGITLKGIEGI-------------KRVVIRKEGD-----EYTLYTEGSMLKDVIKI 253
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD R ++N+I EI+ V G+EA R ++ E + L+ GL V+ RH+ L+ D+MT G
Sbjct: 254 EGVDASRIYTNNIGEIYSVFGVEAARNAIIHEASETLREQGLTVDDRHIMLVADIMTCDG 313
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA + D + GV+ENII+GQ ++GTG
Sbjct: 314 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGDIDKLSGVTENIIVGQPIKLGTG 373
>gi|426255838|ref|XP_004021555.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Ovis aries]
Length = 1390
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKAHR 1368
>gi|315425378|dbj|BAJ47044.1| DNA-directed RNA polymerase subunit A [Candidatus Caldiarchaeum
subterraneum]
gi|315426559|dbj|BAJ48189.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
gi|343485295|dbj|BAJ50949.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
Length = 1254
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 97/158 (61%)
Query: 1523 ITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKE 1582
I ++ FK ++++ T+G++L +V+ VD R +NDI EI +V GIEA R ++ +E
Sbjct: 1095 IKKATVFKEKDEYVIRTEGSNLREVMEVPGVDWRRIKTNDIYEIAEVFGIEAARNAIVEE 1154
Query: 1583 MNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMD 1642
VL+ GL V+ RHL LL D+MT G + I RHG+ + + L R ++E +V L++
Sbjct: 1155 AKAVLEDQGLDVDIRHLLLLADMMTVSGSVKQIGRHGVVKLKSSVLARAAYEISVQTLLE 1214
Query: 1643 AAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
AAA E D ++G E I++G+ ++GTG LL+ EK
Sbjct: 1215 AAARGEVDSLKGNVERILIGREIQVGTGMVTLLMSHEK 1252
>gi|55778568|gb|AAH86344.1| Polr3a protein [Rattus norvegicus]
Length = 491
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ FK L +G +L V++ V
Sbjct: 297 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------FK------LLVEGDNLRAVMATHGV 342
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 343 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 402
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 403 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 462
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 463 LLHKANR 469
>gi|397483770|ref|XP_003813067.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Pan
paniscus]
Length = 1267
Score = 108 bits (271), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1073 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1118
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1119 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1178
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1179 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1238
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1239 LLHKADRDPNPPKRPL 1254
>gi|410044035|ref|XP_507865.4| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Pan
troglodytes]
Length = 1380
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1186 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1231
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1232 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1291
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1292 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1351
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1352 LLHKADRDPNPPKRPL 1367
>gi|134045259|ref|YP_001096745.1| DNA-directed RNA polymerase subunit A'' [Methanococcus maripaludis
C5]
gi|166229258|sp|A4FWF5.1|RPOA2_METM5 RecName: Full=DNA-directed RNA polymerase subunit A''
gi|132662884|gb|ABO34530.1| DNA-directed RNA polymerase, subunit A' ' [Methanococcus maripaludis
C5]
Length = 386
Score = 108 bits (270), Expect = 3e-20, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K + +++L ++G+++ +V VD +T +N+I EI V
Sbjct: 215 IHLKGVQNIKRVIIR-----KEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ EM+ L GL V+ RHL ++ D+M G + I RHGI + L
Sbjct: 270 LGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
R +FEETV L A+ D + GV ENII+G+ MGTGC D+ +D
Sbjct: 330 RAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPIAMGTGCIDICID 377
>gi|398022082|ref|XP_003864203.1| DNA-directed RNA polymerase III largest subunit , putative
[Leishmania donovani]
gi|322502438|emb|CBZ37521.1| DNA-directed RNA polymerase III largest subunit , putative
[Leishmania donovani]
Length = 1590
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 96/162 (59%), Gaps = 5/162 (3%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L+ V+S VD VRT N + I + LGIEA R+++ +E+ ++LQ Y L ++
Sbjct: 1353 LLAEGAELLSVMSLPYVDGVRTTCNHVAVIERALGIEAARETIVREITSILQAYSLNIDI 1412
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT++G ++ ITR+GI + + L SFE T + L +AA D VS
Sbjct: 1413 RHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTEREDVNLSVS 1472
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMMGGP 1697
E+II+G+ +GT F++LLD K I P + TG M P
Sbjct: 1473 ESIIIGKPIPLGTSSFNILLD----KGSIAPPGSNTGRMPSP 1510
>gi|221043166|dbj|BAH13260.1| unnamed protein product [Homo sapiens]
Length = 1369
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1175 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1220
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1221 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1280
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1281 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1340
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1341 LLHKADRDPNPPKRPL 1356
>gi|150402533|ref|YP_001329827.1| DNA-directed RNA polymerase subunit A'' [Methanococcus maripaludis
C7]
gi|166229259|sp|A6VGV0.1|RPOA2_METM7 RecName: Full=DNA-directed RNA polymerase subunit A''
gi|150033563|gb|ABR65676.1| DNA-directed RNA polymerase, subunit A'' [Methanococcus maripaludis
C7]
Length = 386
Score = 108 bits (270), Expect = 3e-20, Method: Composition-based stats.
Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 6/178 (3%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K + +++L ++G+++ +V VD +T +N+I EI V
Sbjct: 215 IHLKGVQNIKRVIIR-----KEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ EM+ L GL V+ RHL ++ D+M G + I RHGI + L
Sbjct: 270 LGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 1687
R +FEETV L A+ D + GV ENII+G+ MGTGC D+ +D +K ++G E+
Sbjct: 330 RAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPIAMGTGCIDVCID-KKYEEGKEL 386
>gi|351708991|gb|EHB11910.1| DNA-directed RNA polymerase III subunit RPC1 [Heterocephalus glaber]
Length = 1392
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1198 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1243
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1244 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1303
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1304 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1363
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A + + + PL
Sbjct: 1364 LLHKANRDPNPPQRPL 1379
>gi|39725938|ref|NP_008986.2| DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
gi|206729892|sp|O14802.2|RPC1_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName:
Full=DNA-directed RNA polymerase III subunit A; AltName:
Full=RNA polymerase III 155 kDa subunit; Short=RPC155;
AltName: Full=RNA polymerase III subunit C160
gi|26996801|gb|AAH41089.1| Polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|119575002|gb|EAW54617.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|168277638|dbj|BAG10797.1| DNA-directed RNA polymerase III subunit RPC1 [synthetic construct]
Length = 1390
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1362 LLHKADRDPNPPKRPL 1377
>gi|326923517|ref|XP_003207982.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like, partial
[Meleagris gallopavo]
Length = 641
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 447 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 492
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 493 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 552
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 553 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 612
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 613 LLHKADK 619
>gi|401428277|ref|XP_003878621.1| DNA-directed RNA polymerase III largest subunit ,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322494870|emb|CBZ30173.1| DNA-directed RNA polymerase III largest subunit ,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1589
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 5/162 (3%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L+ V+S VD VRT N + I + LGIEA R+++ KE ++LQ Y L ++
Sbjct: 1353 LLAEGAELLSVMSLPYVDGVRTTCNHVAVIERALGIEAARETIVKETTSILQAYSLNIDI 1412
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT++G ++ ITR+GI + + L SFE T + L +AA D VS
Sbjct: 1413 RHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTEREDVNLSVS 1472
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMMGGP 1697
E+II+G+ +GT F +LLD K I P + TG M P
Sbjct: 1473 ESIIIGKPIPLGTSSFSILLD----KGSIAPPGSNTGRMPSP 1510
>gi|297301053|ref|XP_002805710.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Macaca
mulatta]
Length = 1405
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1211 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1256
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1257 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1316
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1317 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1376
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1377 LLHKADRDPNPPKRPL 1392
>gi|403297971|ref|XP_003939815.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Saimiri
boliviensis boliviensis]
Length = 1390
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A + + + PL
Sbjct: 1362 LLHKANRDPNPPKRPL 1377
>gi|402880352|ref|XP_003903768.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Papio
anubis]
Length = 1390
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1362 LLHKADRDPNPPKRPL 1377
>gi|355562468|gb|EHH19062.1| hypothetical protein EGK_19701 [Macaca mulatta]
gi|355782811|gb|EHH64732.1| hypothetical protein EGM_18035 [Macaca fascicularis]
gi|380809180|gb|AFE76465.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415455|gb|AFH30941.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415457|gb|AFH30942.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415459|gb|AFH30943.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415461|gb|AFH30944.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415463|gb|AFH30945.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
Length = 1390
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1362 LLHKADRDPNPPKRPL 1377
>gi|410216326|gb|JAA05382.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410254866|gb|JAA15400.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410296284|gb|JAA26742.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410329457|gb|JAA33675.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
Length = 1390
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1362 LLHKADRDPNPPKRPL 1377
>gi|254584114|ref|XP_002497625.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
gi|238940518|emb|CAR28692.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
Length = 1458
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 85/139 (61%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V+S V +T +N I E++ VLGIEA R S+ E++ + +G+ V+
Sbjct: 1291 LLVEGYGLRDVMSTDGVVGHKTVTNHILEVYSVLGIEAARASIVGEIDYTMSNHGMSVDP 1350
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + GVS
Sbjct: 1351 RHIQLLGDVMTYKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVS 1410
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F ++
Sbjct: 1411 ECIILGQTMAIGTGAFKVV 1429
>gi|395330745|gb|EJF63128.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1404
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 1/144 (0%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L KV++ + + +T SN + E+ QVLGIEA RK++ E+N ++ +G+ ++
Sbjct: 1247 LLVEGYGLQKVMTTQGIVGEQTTSNHVIEVAQVLGIEAARKTIINEINYTMKSHGMSIDP 1306
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVM+ KG ++ ITR G+ + LM SFE+T D L DA+A+ + D + GVS
Sbjct: 1307 RHVMLLGDVMSYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYGKTDAIAGVS 1366
Query: 1657 ENIIMGQLPRM-GTGCFDLLLDAE 1679
E+IIMG M GT L+ A
Sbjct: 1367 ESIIMGNPAAMTGTSMPALVTPAP 1390
>gi|325960114|ref|YP_004291580.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium sp. AL-21]
gi|325331546|gb|ADZ10608.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium sp. AL-21]
Length = 384
Score = 108 bits (270), Expect = 3e-20, Method: Composition-based stats.
Identities = 67/190 (35%), Positives = 108/190 (56%), Gaps = 18/190 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A+ + D+ + G++ IGKV +I + G +W + T+G++L VL
Sbjct: 213 ADKVRDLQISGVKNIGKV-------------VIRKEG-----PEWAIHTEGSNLGAVLKM 254
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
V+ RT +NDI E+ +VLG+EA R ++ E + ++ GL V+ RH+ L+ D+MTA G
Sbjct: 255 EGVNKTRTSTNDIHEVEKVLGVEAARNAIIHEAQSTMEEQGLTVDVRHIMLVADMMTADG 314
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ +I RHGI+ + L R SFEET L+ A+ E D + G+ ENII+GQ +GTG
Sbjct: 315 KVKSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTG 374
Query: 1671 CFDLLLDAEK 1680
+++ +K
Sbjct: 375 SVGVVMKDKK 384
>gi|139948582|ref|NP_001077219.1| DNA-directed RNA polymerase III subunit RPC1 [Bos taurus]
gi|187611407|sp|A4IF62.1|RPC1_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III subunit A
gi|134024541|gb|AAI34423.1| POLR3A protein [Bos taurus]
gi|296472154|tpg|DAA14269.1| TPA: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Bos
taurus]
Length = 1390
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>gi|168009054|ref|XP_001757221.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691719|gb|EDQ78080.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1397
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 106/203 (52%), Gaps = 19/203 (9%)
Query: 1478 DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLL 1537
DK + +L + NML + ++GI ++ +R +I + K + + L+
Sbjct: 1201 DKGKLYFYLHSL-CNMLPKVIVKGIPSV-------------ERAVINKE---KGVYNLLV 1243
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
E GT+L V+ V+ T SN + E Q LGIEA R + E+ + +G+ ++ R
Sbjct: 1244 E--GTNLKAVMGISGVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTIDAR 1301
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
H+ LL DVMT KG ++ ITR GI + LM SFE+T D L DAA H D + GVSE
Sbjct: 1302 HMMLLADVMTYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGVSE 1361
Query: 1658 NIIMGQLPRMGTGCFDLLLDAEK 1680
IIMG +GTG F + EK
Sbjct: 1362 CIIMGIPMPIGTGLFKIRQKVEK 1384
>gi|432115682|gb|ELK36917.1| DNA-directed RNA polymerase III subunit RPC1 [Myotis davidii]
Length = 951
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 757 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 802
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 803 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 862
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 863 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 922
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 923 LLHKANR 929
>gi|159905692|ref|YP_001549354.1| DNA-directed RNA polymerase subunit A'' [Methanococcus maripaludis
C6]
gi|226699055|sp|A9A9U9.1|RPOA2_METM6 RecName: Full=DNA-directed RNA polymerase subunit A''
gi|159887185|gb|ABX02122.1| DNA-directed RNA polymerase, subunit A'' [Methanococcus maripaludis
C6]
Length = 386
Score = 108 bits (269), Expect = 3e-20, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K + +++L ++G+++ +V VD +T +N+I EI V
Sbjct: 215 IHLKGVQNIKRVIIR-----KEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ EM+ L GL V+ RHL ++ D+M G + I RHGI + L
Sbjct: 270 LGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
R +FEETV L A+ D + GV ENII+G+ MGTGC D+ +D
Sbjct: 330 RAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPIAMGTGCIDVCID 377
>gi|430813213|emb|CCJ29412.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1390
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 85/139 (61%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V++ V +T +N + E+ QVLGIEA R S+ KE++ + +G+ ++
Sbjct: 1223 LLVEGYGLRDVINTDGVVGTKTSTNHVMEMKQVLGIEAARASIIKEIDITMSSHGMNIDP 1282
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT +G ++ ITR G+ + LM SFE+T D L DAAA D + GVS
Sbjct: 1283 RHVMLLGDVMTYRGEILGITRFGVAKMKNSVLMLASFEKTTDHLFDAAARLTKDSIEGVS 1342
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+G+ +GTG F L+
Sbjct: 1343 ECIILGKPAPIGTGLFRLV 1361
>gi|296220277|ref|XP_002756253.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Callithrix jacchus]
Length = 1390
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>gi|402469132|gb|EJW04186.1| hypothetical protein EDEG_01518 [Edhazardia aedis USNM 41457]
Length = 586
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 85/140 (60%), Gaps = 2/140 (1%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +GT L+ +L+ + SN++ E + VLGIEA R+S+ E+ ++ +G+ +
Sbjct: 442 YNLIVEGTGLLDILATIGIK--TAISNNVMENYDVLGIEAARQSIINEILYTMENHGITI 499
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
N RH+ LL D MT KG + ITRHGI++ LM SFE+T D L +A + D ++G
Sbjct: 500 NRRHVELLADTMTYKGQTLGITRHGISKMKMSTLMLASFEQTSDHLFEATLKGKIDEIKG 559
Query: 1655 VSENIIMGQLPRMGTGCFDL 1674
VSE IIMG+ +GTG +L
Sbjct: 560 VSECIIMGKKMGVGTGVVEL 579
>gi|410975432|ref|XP_003994136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Felis catus]
Length = 1390
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A++
Sbjct: 1362 LLHKADR 1368
>gi|240103981|ref|YP_002960290.1| DNA-directed RNA polymerase subunit A'' [Thermococcus gammatolerans
EJ3]
gi|259494163|sp|C5A207.1|RPOA2_THEGJ RecName: Full=DNA-directed RNA polymerase subunit A''
gi|239911535|gb|ACS34426.1| DNA-directed RNA polymerase subunit A' (rpoA2) [Thermococcus
gammatolerans EJ3]
Length = 391
Score = 108 bits (269), Expect = 3e-20, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 101/179 (56%), Gaps = 18/179 (10%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+G+ +GK II + G+ ++++ T+G++ +VL VDP RT
Sbjct: 223 LKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQVLKVPGVDPTRT 264
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+N+I EI VLGIEA R ++ +E+ ++ GL V+ RH+ L+ D+MT G + I RH
Sbjct: 265 RTNNIWEIADVLGIEAARNAIIEEIVNTMREQGLEVDIRHIMLVADMMTLDGVIRPIGRH 324
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
GI + + L R +FE T L +AA E DP+ GV EN+++GQ +GTG L ++
Sbjct: 325 GIVGEKSSVLARAAFEITTQHLFEAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLTMN 383
>gi|379994184|gb|AFD22719.1| RNA polymerase III largest subunit [Collodictyon triciliatum]
Length = 186
Score = 108 bits (269), Expect = 3e-20, Method: Composition-based stats.
Identities = 60/127 (47%), Positives = 77/127 (60%)
Query: 1565 EIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQD 1624
E+ QVLGIEA R ++ KE+ VL YG+ V+ RH+ LL DVMT KG ++ ITR G+ +
Sbjct: 2 EMQQVLGIEAARSTIMKEIGDVLSNYGIAVDQRHMMLLADVMTYKGEVLGITRFGMAKMK 61
Query: 1625 TGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDG 1684
LM SFE+TVD L DAA H +D + GVSE II+G +GTG F LL + D
Sbjct: 62 ESVLMLASFEKTVDHLFDAAIHGRSDKIVGVSECIILGTPVFIGTGAFKLLYSSNFAVDS 121
Query: 1685 IEIPLAT 1691
AT
Sbjct: 122 TGKSTAT 128
>gi|109503668|ref|XP_001056048.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
gi|392353748|ref|XP_341389.5| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
Length = 1390
Score = 108 bits (269), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ FK L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------FK------LLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>gi|73953679|ref|XP_536399.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Canis lupus
familiaris]
Length = 1390
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A++
Sbjct: 1362 LLHKADR 1368
>gi|443899688|dbj|GAC77017.1| RNA polymerase III, large subunit [Pseudozyma antarctica T-34]
Length = 1400
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 135/255 (52%), Gaps = 26/255 (10%)
Query: 1433 DAVDKMEDDMFLRCIEANMLSDMTLQFI--RIM---NSDDSKMQDEEDAVDKMEDDMF-L 1486
DA+ K++ ++ L I+ +++ L+ R+M + ++ + VDK + + L
Sbjct: 1154 DAIQKLQLEITLNDIKWAIVNAPKLKIKEERVMVVPKKNRIRIYVPPEGVDKESEVYYNL 1213
Query: 1487 RCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMK 1546
+ ++ L + ++GI PQ + + +I E G K L +G L+K
Sbjct: 1214 KALK-RALPSIVVKGI----------PQ--ATRAVISDEKGTRK------LLVEGYGLLK 1254
Query: 1547 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1606
V++ V +T +N + E+ VLGIEA R SV +E+ T + +G+ ++ RH+ LL D M
Sbjct: 1255 VMTTEGVIGTQTHTNHVMEMQSVLGIEAARTSVYREIETTMSAHGMSIDPRHIMLLADTM 1314
Query: 1607 TAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPR 1666
T KG ++ ITR G+ + LM SFE+T D L DAA + D + GVSE+IIMG +
Sbjct: 1315 TYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAALFGKKDEVLGVSESIIMGNPAQ 1374
Query: 1667 -MGTGCFDLLLDAEK 1680
+GTG L++ A K
Sbjct: 1375 TVGTGMPALVVPAPK 1389
>gi|308449389|ref|XP_003087948.1| CRE-RPC-1 protein [Caenorhabditis remanei]
gi|308250793|gb|EFO94745.1| CRE-RPC-1 protein [Caenorhabditis remanei]
Length = 1027
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 16/220 (7%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
+I+ + M + K+ M ++ ++ + L ++ ++GI ++ + +H D KK
Sbjct: 804 KIVAHGKTMMAIRPPSTSKLSKTMTMQMLKYS-LGNVVIKGISSVNRCVIH---ADEKK- 858
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
G+F + L +GT VLS VDP +T N+ + +VLGIEA R +
Sbjct: 859 ------GDF-----YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVAEVLGIEAARTCII 907
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1640
E+ + +G+ ++ RH+ LL DVMT +G ++ ITR+G+ + L+ SFE+T+D L
Sbjct: 908 NEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHL 967
Query: 1641 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
+AA ++ D + GVSE IIMG +GTG F L+ EK
Sbjct: 968 FEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKHEK 1007
>gi|301765986|ref|XP_002918413.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Ailuropoda melanoleuca]
Length = 1390
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A++
Sbjct: 1362 LLHKADR 1368
>gi|308491392|ref|XP_003107887.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
gi|308249834|gb|EFO93786.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
Length = 1406
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 16/220 (7%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
+I+ + M + K+ M ++ ++ + L ++ ++GI ++ + +H D KK
Sbjct: 1183 KIVAHGKTMMAIRPPSTSKLSKTMTMQMLKYS-LGNVVIKGISSVNRCVIH---ADEKK- 1237
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
G+F + L +GT VLS VDP +T N+ + +VLGIEA R +
Sbjct: 1238 ------GDF-----YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVAEVLGIEAARTCII 1286
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1640
E+ + +G+ ++ RH+ LL DVMT +G ++ ITR+G+ + L+ SFE+T+D L
Sbjct: 1287 NEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHL 1346
Query: 1641 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
+AA ++ D + GVSE IIMG +GTG F L+ EK
Sbjct: 1347 FEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKHEK 1386
>gi|124486963|ref|NP_001074716.1| DNA-directed RNA polymerase III subunit RPC1 [Mus musculus]
gi|187956633|gb|AAI51169.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|187956659|gb|AAI51170.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|223462631|gb|AAI51003.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
Length = 1390
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ FK L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------FK------LLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>gi|84490159|ref|YP_448391.1| DNA-directed RNA polymerase subunit A'' [Methanosphaera stadtmanae
DSM 3091]
gi|84373478|gb|ABC57748.1| RpoA2 [Methanosphaera stadtmanae DSM 3091]
Length = 389
Score = 108 bits (269), Expect = 4e-20, Method: Composition-based stats.
Identities = 77/241 (31%), Positives = 134/241 (55%), Gaps = 26/241 (10%)
Query: 1440 DDMFLRCIEANMLSDMTLQFIRIMNS----DDSKMQDEEDAVDKMEDDMFLRCIEANMLS 1495
D+ L E + + T + ++I N+ + + +DEE KM+ + + A+ +
Sbjct: 167 DERRLELSEVTAVIEKTFKQVKINNNLLSFETTFSKDEE----KMQQGIRELRLLADKIR 222
Query: 1496 DMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDP 1555
D+ + G++ IGKV +I E E W++ T+G+++ +L VD
Sbjct: 223 DLQISGVKGIGKV------------VIRHEHNE------WVIHTEGSNIGAILKIDGVDI 264
Query: 1556 VRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAI 1615
V+T +NDI EI +VLGIEA R ++ E+ T ++ GL V+ RH+ L+ D+MT++G + +I
Sbjct: 265 VKTTTNDIFEIEKVLGIEAARNAIIHELYTTMEEQGLSVDIRHIMLVADMMTSEGVVKSI 324
Query: 1616 TRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
RHGI+ + + L R +FEET L++A+ E D + G+ EN+I+GQ GTG ++
Sbjct: 325 GRHGISGEKSSVLARAAFEETGKHLLNASIRGETDKLTGIIENVIVGQPIPHGTGSVGVI 384
Query: 1676 L 1676
+
Sbjct: 385 M 385
>gi|426365245|ref|XP_004049691.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Gorilla
gorilla gorilla]
Length = 1334
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1140 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1185
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1186 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1245
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1246 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1305
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1306 LLHKADRDPNPPKRPL 1321
>gi|315426617|dbj|BAJ48245.1| DNA-directed RNA polymerase subunit A', partial [Candidatus
Caldiarchaeum subterraneum]
Length = 283
Score = 108 bits (269), Expect = 4e-20, Method: Composition-based stats.
Identities = 65/181 (35%), Positives = 105/181 (58%)
Query: 1500 QGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTF 1559
+G+ I +V + K I ++ FK ++++ T+G++L +V+ VD R
Sbjct: 101 EGLMDIARVRERISSIKVKGIRRIKKATVFKEKDEYVIRTEGSNLREVMEVPGVDWRRIK 160
Query: 1560 SNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHG 1619
+NDI EI +V GIEA R ++ +E VL+ GL V+ RHL LL D+MT G + I RHG
Sbjct: 161 TNDIYEIAEVFGIEAARNAIVEEAKAVLEDQGLDVDIRHLLLLADMMTVSGSVKQIGRHG 220
Query: 1620 INRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
+ + + L R ++E +V L++AAA E D ++G E I++G+ ++GTG LL+ E
Sbjct: 221 VVKLKSSVLARAAYEISVQTLLEAAARGEVDSLKGNVERILIGREIQVGTGMVTLLMSHE 280
Query: 1680 K 1680
K
Sbjct: 281 K 281
>gi|148669493|gb|EDL01440.1| mCG7865 [Mus musculus]
Length = 1349
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ FK L +G +L V++ V
Sbjct: 1155 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------FK------LLVEGDNLRAVMATHGV 1200
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1201 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1260
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1261 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1320
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1321 LLHKANR 1327
>gi|149690349|ref|XP_001504046.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Equus
caballus]
Length = 1390
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>gi|149015767|gb|EDL75115.1| similar to polymerase (RNA) III (DNA directed) (155kD) [Rattus
norvegicus]
Length = 745
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ FK L +G +L V++ V
Sbjct: 551 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------FK------LLVEGDNLRAVMATHGV 596
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 597 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 656
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 657 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 716
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 717 LLHKANR 723
>gi|224003141|ref|XP_002291242.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220973018|gb|EED91349.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1422
Score = 108 bits (269), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G L +V+ VD T +N I E+ Q LG+EA R S+ E++ ++ YG+ +
Sbjct: 1257 YHLLVEGYGLAEVMGSPGVDGRHTTTNHIIEVEQTLGVEAARTSISSEISYIMNAYGIGI 1316
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RHL LL DVMT KG ++ ITR G+ + LM SFE+T D L+DAA H D + G
Sbjct: 1317 DSRHLLLLSDVMTFKGEVLGITRFGVAKMRESVLMLASFEKTTDHLLDAAVHGRTDAIDG 1376
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATG---MMGG 1696
VSE IIMG +GTG F LL A + +P ++GG
Sbjct: 1377 VSECIIMGIPIPIGTGLFKLLKRATRASKPEPVPTVVSRGLLLGG 1421
>gi|332796430|ref|YP_004457930.1| DNA-directed RNA polymerase subunit A'' [Acidianus hospitalis W1]
gi|332694165|gb|AEE93632.1| DNA-directed RNA polymerase, subunit A'' [Acidianus hospitalis W1]
Length = 392
Score = 107 bits (268), Expect = 4e-20, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 98/158 (62%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR I+ + G+ ++++ TDG++L VL + VD R +N++ E+ VLGIEA R+
Sbjct: 235 KRAIVQKRGD-----EYVIITDGSNLEGVLGIKGVDVSRIETNNLHEVENVLGIEAAREL 289
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E+ VL GL V+ RH+ L+ D+MT G + I RHG+ + T + +FE TV
Sbjct: 290 ITREIKKVLDDQGLDVDIRHVELVADIMTRTGEVRQIGRHGVTGEKTSVFAKAAFEVTVK 349
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAAA + + RGV ENII+GQ ++GTG +LL+
Sbjct: 350 HLLDAAARGDVEEFRGVVENIIIGQPIKLGTGMVELLM 387
>gi|357472533|ref|XP_003606551.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355507606|gb|AES88748.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 550
Score = 107 bits (268), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
++R+I+T G + +L G L +V+ VD +T +N I E+ +LGIEA R
Sbjct: 378 RRRMILT--GNIIVASSLVLLNKG--LKEVMGIEGVDGHKTVTNHIIELMNILGIEAARY 433
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
+ ++ ++ +G+ ++ RH+ LL D+MT +G ++ +TRHGI + ALM SFE +
Sbjct: 434 GIIDQIQYTMKQHGMSIDVRHIMLLADMMTVRGQVLGMTRHGIQKMGRSALMLASFESST 493
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
D L DA+ + DP+ GVS+ IIMG+ +GTG ++
Sbjct: 494 DYLFDASLRGKGDPIEGVSDCIIMGKPIHIGTGMIEV 530
>gi|354544265|emb|CCE40988.1| hypothetical protein CPAR2_110260 [Candida parapsilosis]
Length = 1446
Score = 107 bits (268), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 104/183 (56%), Gaps = 17/183 (9%)
Query: 1493 MLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
+L D+ ++G+ I + +++ + D KK +++ +G L V++
Sbjct: 1254 VLPDICIKGLPNIFRAVINI-KDDGKKELLV----------------EGYGLKDVMNTEG 1296
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
+ +T +N + E+ ++LGIEA R S+ +E+ + +G+ V+ RH+ LL DVMT KG +
Sbjct: 1297 IVGTKTTTNHVLEVNEILGIEAARGSIIREIEYTMSNHGMSVDPRHIQLLGDVMTYKGEV 1356
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+ ITR G+++ L SFE+T D L DAA + D + GVSE II+GQ R+GTG F
Sbjct: 1357 LGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKKDKIEGVSECIILGQTMRVGTGAF 1416
Query: 1673 DLL 1675
L+
Sbjct: 1417 KLV 1419
>gi|124485980|ref|YP_001030596.1| hypothetical protein Mlab_1160 [Methanocorpusculum labreanum Z]
gi|124363521|gb|ABN07329.1| DNA-directed RNA polymerase, subunit A'' [Methanocorpusculum
labreanum Z]
Length = 504
Score = 107 bits (268), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 86/143 (60%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+++L T+G++L V VD RT +N+I EI LG+EA R ++ E T L+ G+
Sbjct: 356 EYILHTEGSNLKDVFEIDGVDCTRTRTNNISEIASTLGVEAARSAIIYEAFTTLKEQGIS 415
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ L+ D+M G + I RHGI + L R SFE TV+ L+DAA E D +
Sbjct: 416 VDLRHIMLVSDIMCMDGEVKQIGRHGIAGEKESVLSRASFEVTVNHLLDAAVAHEYDELS 475
Query: 1654 GVSENIIMGQLPRMGTGCFDLLL 1676
GV+EN+I+GQ +GTG L++
Sbjct: 476 GVTENVIVGQPILLGTGDVKLMV 498
>gi|352682851|ref|YP_004893375.1| DNA-directed RNA polymerase subunit A'' [Thermoproteus tenax Kra 1]
gi|350275650|emb|CCC82297.1| DNA-directed RNA polymerase subunit A'' [Thermoproteus tenax Kra 1]
Length = 378
Score = 107 bits (268), Expect = 5e-20, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 85/144 (59%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+W + T+GT+L VL +VD RT+SND+ E+ +VLGIE R + E+ VL GL
Sbjct: 233 GEWYIVTEGTNLEGVLQLEEVDYTRTYSNDLHEVAEVLGIEVARTLIMSEIRRVLVDQGL 292
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V+ RH+ ++ D MT G + I RHG+ L R +FE TV L++AA + +P
Sbjct: 293 DVDVRHMYMIADAMTWLGKVRPIGRHGVVGSKESPLARAAFEVTVKTLVEAATKGDVEPF 352
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLL 1676
RGV ENII G+ +GTG LL+
Sbjct: 353 RGVFENIIAGRHIPIGTGMVKLLM 376
>gi|281340311|gb|EFB15895.1| hypothetical protein PANDA_006866 [Ailuropoda melanoleuca]
Length = 1375
Score = 107 bits (268), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1181 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1226
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1227 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1286
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1287 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1346
Query: 1674 LLLDAEK 1680
LL A++
Sbjct: 1347 LLHKADR 1353
>gi|15791387|ref|NP_281211.1| DNA-directed RNA polymerase subunit A'' [Halobacterium sp. NRC-1]
gi|169237148|ref|YP_001690348.1| DNA-directed RNA polymerase subunit A'' [Halobacterium salinarum R1]
gi|226734917|sp|B0R8D3.1|RPOA2_HALS3 RecName: Full=DNA-directed RNA polymerase subunit A''
gi|338819302|sp|P0CX07.1|RPOA2_HALSA RecName: Full=DNA-directed RNA polymerase subunit A''; Short=Subunit
C
gi|43543|emb|CAA40427.1| RNA polymerase subunit C [Halobacterium salinarum]
gi|10582042|gb|AAG20691.1| DNA-directed RNA polymerase subunit C [Halobacterium sp. NRC-1]
gi|167728214|emb|CAP15002.1| DNA-directed RNA polymerase subunit A'' (subunit C) [Halobacterium
salinarum R1]
Length = 397
Score = 107 bits (268), Expect = 5e-20, Method: Composition-based stats.
Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+ +GIE + +V + E + +++L T+G++ K L V
Sbjct: 221 LRDIVFKGIEEVSRV--------------VIRREETERGEEFVLYTEGSAFKKALKIEGV 266
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT N+I E+ + LGIEA R+++ E T L+ GL VN RHL L+ D+MT G +
Sbjct: 267 DATRTSCNNIHEVHKTLGIEAAREAIINETMTTLEEQGLDDVNIRHLMLVADIMTNDGTI 326
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L+DAA H E+D + GV EN+I+G+ R+GTG
Sbjct: 327 ESIGRHGISGNKNSVLARAAFEVTVNHLLDAAIHGESDDLDGVIENVIVGKPVRLGTGDV 386
Query: 1673 DLLLDAEKCKD 1683
DL + A + D
Sbjct: 387 DLRMGATQTSD 397
>gi|320101548|ref|YP_004177140.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
2162]
gi|319753900|gb|ADV65658.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus DSM
2162]
Length = 407
Score = 107 bits (268), Expect = 5e-20, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 101/160 (63%), Gaps = 5/160 (3%)
Query: 1511 HLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVL 1570
HL +++II + G+ ++++ +G++L +V+ VD R ++N+I EI +VL
Sbjct: 229 HLKGIKEIRKVIIQKRGD-----EYVIVAEGSNLEEVMRVEGVDWRRVYTNNIQEIEEVL 283
Query: 1571 GIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1630
GIEA R+++ +E+ +L+ GL V+ RH+ LL D+MT GH+ + R G+ + L +
Sbjct: 284 GIEAARQAIIREIREILEDQGLDVDIRHIMLLADMMTWTGHVRQVGRMGVAGEKPSVLAK 343
Query: 1631 CSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+FE TV L+++AA E D + GV+ENII+GQ+ +GTG
Sbjct: 344 ATFEMTVQKLLESAATGEEDKLYGVTENIIIGQIIPVGTG 383
>gi|133433|sp|P09847.2|RPOA2_METTW RecName: Full=DNA-directed RNA polymerase subunit A''; Short=Subunit
C
gi|809728|emb|CAA30839.1| unnamed protein product [Methanothermobacter thermautotrophicus]
Length = 449
Score = 107 bits (268), Expect = 5e-20, Method: Composition-based stats.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A+ + + + G++ IGKV + K +W++ T+G++L E
Sbjct: 280 ADKVRKLQISGVKNIGKVVIR------------------KEDDEWVIHTEGSNLGDRFKE 321
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD VRT +NDI EI VLGIEA R ++ E ++ GL V+ RH+ L+ D+MTA G
Sbjct: 322 EGVDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADG 381
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ +I RHGI+ + L R SFEET L+ A+ E D + G+ ENII+GQ +GTG
Sbjct: 382 SVKSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTG 441
Query: 1671 CFDLLL 1676
+++
Sbjct: 442 SVSVIM 447
>gi|348576170|ref|XP_003473860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Cavia
porcellus]
Length = 1390
Score = 107 bits (267), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>gi|57529842|ref|NP_001006500.1| DNA-directed RNA polymerase III subunit RPC1 [Gallus gallus]
gi|75571385|sp|Q5ZL98.1|RPC1_CHICK RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III subunit A
gi|53130332|emb|CAG31495.1| hypothetical protein RCJMB04_7b9 [Gallus gallus]
Length = 1390
Score = 107 bits (267), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 1362 LLHKADK 1368
>gi|157875469|ref|XP_001686126.1| putative DNA-directed RNA polymerase III largest subunit [Leishmania
major strain Friedlin]
gi|68129200|emb|CAJ07737.1| putative DNA-directed RNA polymerase III largest subunit [Leishmania
major strain Friedlin]
Length = 1582
Score = 107 bits (267), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 96/162 (59%), Gaps = 5/162 (3%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L+ V+S VD VRT N + I + LGIEA R+++ KE+ ++LQ Y L ++
Sbjct: 1348 LLAEGAELLSVMSLPYVDGVRTTCNHVAVIERALGIEAARETIVKEITSILQAYSLNIDI 1407
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT++G ++ ITR+GI + + L SFE T + L +AA D VS
Sbjct: 1408 RHIYLLADVMTSRGVVLGITRYGIQKMNNNVLTMASFERTTEHLYNAAMTEREDVNLSVS 1467
Query: 1657 ENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA-TGMMGGP 1697
E+II+G+ +GT F++LL+ K + P + TG M P
Sbjct: 1468 ESIIIGKPIPLGTSSFNILLN----KGSVAPPGSNTGRMPSP 1505
>gi|212223365|ref|YP_002306601.1| DNA-directed RNA polymerase subunit A'' [Thermococcus onnurineus NA1]
gi|226699349|sp|B6YT17.1|RPOA2_THEON RecName: Full=DNA-directed RNA polymerase subunit A''
gi|212008322|gb|ACJ15704.1| DNA-directed RNA polymerase, subunit A'' [Thermococcus onnurineus
NA1]
Length = 391
Score = 107 bits (267), Expect = 6e-20, Method: Composition-based stats.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 30/245 (12%)
Query: 1443 FLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT---- 1498
F+ I+ L L +I +S + E VD + +R + LSD+
Sbjct: 159 FIVEIDPERLEKSGLDMEKIQKKLESSFKSAEFEVDGYT--LIMRPKKVTKLSDLRRLSE 216
Query: 1499 ------LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
L+G+ +GK II + G+ ++++ T+G++ ++L
Sbjct: 217 KVKKHRLKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQILKVPG 258
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VDP RT +N+I EI +VLGIEA R ++ +E+ ++ GL V+ RH+ L+ D+MT G +
Sbjct: 259 VDPTRTRTNNIHEIAEVLGIEAARNAIIEEIVNTMRDQGLEVDVRHIMLVADMMTLDGVI 318
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+ I RHGI + L R +FE T L +AA E DP+ GV EN+++GQ +GTG
Sbjct: 319 LPIGRHGIVGEKASVLARAAFEITTQHLFEAAERGETDPLNGVVENVLIGQPVPVGTGIV 378
Query: 1673 DLLLD 1677
L ++
Sbjct: 379 KLAMN 383
>gi|291404119|ref|XP_002718445.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
[Oryctolagus cuniculus]
Length = 1390
Score = 107 bits (267), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 RGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>gi|124028421|ref|YP_001013741.1| DNA-directed RNA polymerase subunit A'' [Hyperthermus butylicus DSM
5456]
gi|123979115|gb|ABM81396.1| DNA-directed RNA polymerase subunit A'' [Hyperthermus butylicus DSM
5456]
Length = 424
Score = 107 bits (267), Expect = 6e-20, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 90/156 (57%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
+R+II ++ L T+G++L +VL VDP R ++N I EI +VLGIEA R
Sbjct: 247 RRVIIQSITGPDGRTEYFLVTEGSNLKEVLEVPGVDPRRIYTNSIHEIEEVLGIEAARTM 306
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +EM VL GL V+ RHL L+ D+MT G + I RHG++ + R +FE T
Sbjct: 307 LIREMKDVLDEQGLDVDIRHLMLVADIMTMTGRVRQIGRHGVSGEKPSPFARAAFEMTTQ 366
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
L AA E D + GV+E +I+G + R+GTG ++
Sbjct: 367 NLYAAAVEGEVDRLLGVAETVIVGGVIRVGTGMVEV 402
>gi|345309868|ref|XP_001514706.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1
[Ornithorhynchus anatinus]
Length = 1489
Score = 107 bits (267), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1295 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1340
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1341 KGTKTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1400
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1401 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1460
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + E PL
Sbjct: 1461 LLHKADRDPNPPERPL 1476
>gi|449269147|gb|EMC79953.1| DNA-directed RNA polymerase III subunit RPC1, partial [Columba livia]
Length = 1375
Score = 107 bits (267), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1181 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1226
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1227 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1286
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1287 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1346
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 1347 LLHKADK 1353
>gi|384246317|gb|EIE19808.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1328
Score = 107 bits (267), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 81/145 (55%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G L V+ VD RT +N + E +VLGIEA R + E+ T + +G+ +
Sbjct: 1169 YSLGVEGMDLTAVMGTLGVDGCRTATNHVMETERVLGIEAARTKIMTEIQTTMSSHGMTI 1228
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH LL D MT KG ++ ITR GI + LM SFE+T D L DAA H D + G
Sbjct: 1229 DARHTMLLADCMTYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAALHGRTDDITG 1288
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSE+IIMG GTG F L AE
Sbjct: 1289 VSESIIMGIPMPTGTGLFKLHQHAE 1313
>gi|452208507|ref|YP_007488629.1| DNA-directed RNA polymerase subunit A'' (subunit C) [Natronomonas
moolapensis 8.8.11]
gi|452084607|emb|CCQ37954.1| DNA-directed RNA polymerase subunit A'' (subunit C) [Natronomonas
moolapensis 8.8.11]
Length = 408
Score = 107 bits (267), Expect = 7e-20, Method: Composition-based stats.
Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 9/188 (4%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L ++ +GIE I +V + + D T+SG + +++L T+G++L KVL V
Sbjct: 221 LREIVFKGIEEISRVVIRKEELDD------TQSGSGRE--EFILYTEGSNLKKVLDIEGV 272
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT N+I EI LGIEA R+++ +E L+ GL VN RHL L+ D+MT G +
Sbjct: 273 DASRTTCNNIHEIHNNLGIEAAREAIIEETMNTLEEQGLDDVNIRHLMLVADIMTNTGDI 332
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L+DAA H E D + GV+EN+I+G+ ++GTG
Sbjct: 333 ESIGRHGISGNKDSVLARAAFEVTVNHLLDAAIHGEVDDLDGVTENVIVGKPIKLGTGDV 392
Query: 1673 DLLLDAEK 1680
DL + A +
Sbjct: 393 DLRMGARQ 400
>gi|407461850|ref|YP_006773167.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045472|gb|AFS80225.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
Length = 1263
Score = 107 bits (267), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 90/149 (60%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W+++T G+++ KVL + +D +N++ EI LGIEA R S+ E+N+ L+ GL
Sbjct: 1115 EWVIQTTGSNVAKVLEVKGIDKKNVRTNNVFEIAGTLGIEAARNSLINELNSTLEDQGLE 1174
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ R++ L+ D+M ++G++ I RHGI L R +FE TV + AA E + ++
Sbjct: 1175 VDNRYIMLVADLMCSRGYMQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGEIEQLK 1234
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCK 1682
G++EN+I+G +G+G DL + K K
Sbjct: 1235 GITENVIVGSNIPIGSGTVDLYMQVSKKK 1263
>gi|449540821|gb|EMD31809.1| hypothetical protein CERSUDRAFT_144684 [Ceriporiopsis subvermispora
B]
Length = 1403
Score = 107 bits (267), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L KV++ + T SN I E+ QVLGIEA R+++ E+ +Q +G+ ++
Sbjct: 1246 LLVEGYGLQKVMTTLGIVGEHTSSNHIVEVCQVLGIEAARQTIINEIQYTMQSHGMSIDP 1305
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+ + LM SFE+T D L DAAA + D + GVS
Sbjct: 1306 RHVMLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAALGKTDSIAGVS 1365
Query: 1657 ENIIMGQLPRMGTG 1670
E+IIMG P TG
Sbjct: 1366 ESIIMGN-PAAATG 1378
>gi|448336438|ref|ZP_21525537.1| DNA-directed RNA polymerase subunit A'' [Natrinema pallidum DSM 3751]
gi|445629178|gb|ELY82472.1| DNA-directed RNA polymerase subunit A'' [Natrinema pallidum DSM 3751]
Length = 398
Score = 107 bits (267), Expect = 7e-20, Method: Composition-based stats.
Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+T +GIE + +V + + D+ +++L T+G++ VL V
Sbjct: 217 LRDITFKGIEEVSRVVIRREELDT-------------GTEEFVLYTEGSAFGDVLEIEGV 263
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT N+I EI + LGIEA R+++ +E N L GL VN RHL L+ D+MT +G +
Sbjct: 264 DASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTNRGEI 323
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L++AA H E D + GV+EN+I+G+ ++GTG
Sbjct: 324 ESIGRHGISGSKESVLARAAFEVTVNHLLNAAIHGEVDELDGVTENVIVGKPIKLGTGDV 383
Query: 1673 DLLLDAEKCKDG 1684
DL + + G
Sbjct: 384 DLRMGSTTSGSG 395
>gi|444720682|gb|ELW61459.1| DNA-directed RNA polymerase III subunit RPC1 [Tupaia chinensis]
Length = 1368
Score = 107 bits (267), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1174 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1219
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1220 KGTKTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1279
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1280 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1339
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A + + + PL
Sbjct: 1340 LLHKANRDPNPPKRPL 1355
>gi|300122349|emb|CBK22921.2| unnamed protein product [Blastocystis hominis]
Length = 1576
Score = 107 bits (266), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 2/160 (1%)
Query: 1530 KAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQF 1589
K A L DGT L++V+ VD +T +N + EI VLGIEA R + +E++
Sbjct: 1273 KPTAHMNLLIDGTGLLQVMGTVGVDHTKTVTNHVLEINSVLGIEAARTVLIQEVSNTYGS 1332
Query: 1590 YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEA 1649
YGL ++ RH LL D MT KG ++ +TR GI + + SFE+T D L DAA H
Sbjct: 1333 YGLSIDIRHQMLLADCMTFKGQVLGMTRFGIEKMKESVMTLASFEKTADHLFDAALHGRR 1392
Query: 1650 DPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPL 1689
D + GVS+ +IMG +GTG F ++ + G+ P+
Sbjct: 1393 DNIIGVSDRVIMGIPILVGTGVFSIIY--KPTNYGVVPPM 1430
>gi|290999395|ref|XP_002682265.1| predicted protein [Naegleria gruberi]
gi|284095892|gb|EFC49521.1| predicted protein [Naegleria gruberi]
Length = 1426
Score = 107 bits (266), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 83/147 (56%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+ L +GT L+ V+ V T +N+I EI Q LGIE+ R+ + E+ YG+
Sbjct: 1257 GNVYLLVEGTDLLAVMGTPGVLAKTTKTNNIIEISQTLGIESARQLIMDEIKYTTGSYGM 1316
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
++ RH+ LL D+MT KG + I RHGI + L SFE+T D L +AA+H D +
Sbjct: 1317 NIDTRHIKLLADIMTFKGDIFGIQRHGIIKIRDSVLKMASFEQTTDHLFEAASHTRVDDV 1376
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAE 1679
GVSE IIMG +GTG F LL DA
Sbjct: 1377 NGVSECIIMGVPIPIGTGLFRLLQDAH 1403
>gi|395501590|ref|XP_003755175.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Sarcophilus
harrisii]
Length = 1390
Score = 107 bits (266), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVARAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 QGTKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1362 LLHKADRDPNPPKRPL 1377
>gi|118576747|ref|YP_876490.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
gi|118195268|gb|ABK78186.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
Length = 1260
Score = 107 bits (266), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 90/149 (60%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W+++T G++L KVL+ +D + +N++ EI LGIEA R ++ E+ + L+ GL
Sbjct: 1112 EWVIQTTGSNLPKVLAVEGIDKRQVRTNNVFEIAGTLGIEAARNALINELRSTLEDQGLE 1171
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ R++ L+ D+M ++G++ I RHGI L R +FE TV + AA E + +R
Sbjct: 1172 VDIRYIMLVSDLMCSRGYMQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALSGEVEHLR 1231
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCK 1682
GV+EN+I+G +G+G DL + K K
Sbjct: 1232 GVTENVIVGSNIPIGSGTVDLYMQVAKKK 1260
>gi|356541271|ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
max]
Length = 1391
Score = 107 bits (266), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 109/201 (54%), Gaps = 21/201 (10%)
Query: 1492 NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
N+L + ++GI+ + +V + K R+++ +GT +V+
Sbjct: 1206 NLLPTVVVKGIKTVDRVVISKDTKAEKFRLLV----------------EGTGFREVMGVE 1249
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMN-TVLQFYGLYVNYRHLALLCDVMTAKG 1610
+D +T SN I E+ LGIEA R+S+ KE+ T++ +G+ ++ RH+ LL D+MTA G
Sbjct: 1250 GIDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTATG 1309
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
H++ I R GI++ LM SFE T D+L A+ D + GVSE+IIMG ++GTG
Sbjct: 1310 HILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPIQIGTG 1369
Query: 1671 CFDLLLDAEKCKDGIEIPLAT 1691
++ ++ D E+P T
Sbjct: 1370 ----MIKVKQRLDPPELPHGT 1386
>gi|347601522|gb|AEP16007.1| DNA-dependent RNA polymerase II largest subunit [Emiliania huxleyi
virus 208]
gi|357972677|gb|AET97950.1| RNA polymerase subunit beta [Emiliania huxleyi virus 201]
Length = 1468
Score = 107 bits (266), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 85/140 (60%), Gaps = 1/140 (0%)
Query: 1536 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1595
+++T T L + + VD + +NDI + LGIEA + E+++ L G Y++
Sbjct: 1274 VIQTRSTILHRAYAIPGVDWTKVMTNDIHNVVNTLGIEAALTVIFNELHSTLTADGSYID 1333
Query: 1596 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG- 1654
RH+ L MT +G++M + RHG+N TG L R SFEET +VL DAA AE++ + G
Sbjct: 1334 PRHIELTASTMTLRGYVMPLNRHGLNNIKTGPLTRSSFEETSEVLKDAAIFAESEDVSGS 1393
Query: 1655 VSENIIMGQLPRMGTGCFDL 1674
VS +I+MGQL +GTG FD+
Sbjct: 1394 VSASIMMGQLSAIGTGRFDV 1413
>gi|357472543|ref|XP_003606556.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355507611|gb|AES88753.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 281
Score = 107 bits (266), Expect = 8e-20, Method: Composition-based stats.
Identities = 72/237 (30%), Positives = 128/237 (54%), Gaps = 21/237 (8%)
Query: 1447 IEANMLSDMTLQF---------IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDM 1497
I+AN++ + LQ I+I+ D K+Q E + E L ++ N+L +
Sbjct: 37 IDANIVKESILQTGKLKLKPENIKIL--DIKKLQVEPPGFNPNEILFQLNNLK-NLLPSV 93
Query: 1498 TLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVR 1557
++G++ + + + + + T++G K + L +G L +V+ VD +
Sbjct: 94 VVKGVKTVERTVLKIKKNK-------TDNG--KESETYTLLAEGEGLKEVMGIEGVDGHK 144
Query: 1558 TFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITR 1617
T +N I E+ VLGIEA R + ++ ++ +G+ ++ RH+ LL D+MT +G ++ +TR
Sbjct: 145 TVTNHIIEMRNVLGIEAARYGIIDQIQYTMKQHGMSIDVRHIMLLADMMTVRGQVLGMTR 204
Query: 1618 HGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
HGI + ALM SFE + D L DA+ + DP+ GVS+ IIMG+ ++GTG ++
Sbjct: 205 HGIQKMGRSALMLASFESSTDYLFDASLRGKGDPIEGVSDCIIMGKPIQIGTGMIEV 261
>gi|392569146|gb|EIW62320.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1403
Score = 107 bits (266), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L KV++ + + +T SN + EI QVLGIEA R+++ E+ +Q +G+ ++
Sbjct: 1246 LLVEGYGLQKVMTTQGIVGEQTTSNHVIEIAQVLGIEAARRTIINEIQYTMQSHGMSIDP 1305
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVM+ KG ++ ITR G+ + LM SFE+T D L DA+A+ + D + GVS
Sbjct: 1306 RHVMLLGDVMSYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYGKTDSIAGVS 1365
Query: 1657 ENIIMGQLPRM-GTGCFDLLLDAE 1679
E+IIMG M GT L+ A
Sbjct: 1366 ESIIMGNPAAMTGTSMPALITPAP 1389
>gi|242073562|ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 107 bits (266), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 117/213 (54%), Gaps = 16/213 (7%)
Query: 1458 QFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
+ +R++ D +K++ DK + + L +++ +L + ++GI +
Sbjct: 1172 EHVRVI--DRAKLRIYPAGTDKRKLQLELHNLKS-ILPKVIVKGIPTV------------ 1216
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
+R++I E + L +GT+L+ V+ VD +T SN I E Q LGIEA R+
Sbjct: 1217 -ERVVIDEVKVKNETERYQLLVEGTNLLAVMGTPGVDATKTKSNHIMETNQTLGIEAARR 1275
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
S+ E+ ++ +G+ ++ RH+ LL D+MT KG ++ ITR+GI + + LM SFE+T
Sbjct: 1276 SIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTS 1335
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ L +A+ D + GVSE IIMG ++GTG
Sbjct: 1336 EHLFNASYSGREDQIEGVSECIIMGIPMQLGTG 1368
>gi|340379445|ref|XP_003388237.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Amphimedon queenslandica]
Length = 1402
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 20/198 (10%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + ++GI ++ + +H +++ K + + L +G +L V++ V
Sbjct: 1207 LPRVVIKGINSVSRAIIHQDESNGKTK--------------YKLLVEGLNLRAVMATHGV 1252
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
T SN E+ + LGIEA R+++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1253 KGNSTTSNHTIEVEKTLGIEAARQTIMNEIAYTMVNHGMNIDARHIMLLADLMTFKGEVL 1312
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA H ++D + GVS+ IIMG+ +GTG F
Sbjct: 1313 GITRFGLAKMKESVLMLASFEKTSDHLFDAAFHGQSDVVNGVSDCIIMGRPMSLGTGMFQ 1372
Query: 1674 LLLDAEKCKDGIEIPLAT 1691
LL + PL T
Sbjct: 1373 LLFKPSR------TPLPT 1384
>gi|223478062|ref|YP_002582842.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. AM4]
gi|214033288|gb|EEB74115.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. AM4]
Length = 391
Score = 106 bits (265), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 18/178 (10%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+G+ +GK II + G+ ++++ T+G++ +VL VDP RT
Sbjct: 223 LKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQVLKVPGVDPTRT 264
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+N+I EI VLGIEA R ++ +E+ ++ GL V+ RH+ L+ D+MT G + I RH
Sbjct: 265 RTNNIWEIADVLGIEAARNAIIEEIVNTMREQGLEVDIRHIMLVADMMTLDGVIRPIGRH 324
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
GI + + L R +FE T L +AA E DP+ GV EN+++GQ +GTG L +
Sbjct: 325 GIVGEKSSVLARAAFEITTQHLFEAAERGEVDPLNGVVENVLIGQPVPVGTGIVRLTM 382
>gi|356927797|gb|AET42587.1| hypothetical protein EXVG_00238 [Emiliania huxleyi virus 202]
Length = 418
Score = 106 bits (265), Expect = 1e-19, Method: Composition-based stats.
Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Query: 1536 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1595
+++T T L + + VD R +NDI + LGIEA + E+N+ L G Y++
Sbjct: 224 IIQTRSTILHRAYAIPGVDWSRVMTNDIHNVVNTLGIEAALTVIFNELNSTLTADGSYID 283
Query: 1596 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG- 1654
RH+ L + MT +G++M + RHG+N TG L R SFEET +VL DAA AE++ + G
Sbjct: 284 PRHIELTANTMTLRGYVMPLNRHGLNNIKTGPLTRSSFEETSEVLKDAAIFAESEDVSGS 343
Query: 1655 VSENIIMGQLPRMGTGCFDL 1674
+S +I+MGQL +GTG F++
Sbjct: 344 ISASIMMGQLSAIGTGRFEV 363
>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
Length = 1448
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 1462 IMNSDDSKMQDEEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
++N ++K + + VD ++ +F R L + ++G+ I + +++ + D KK
Sbjct: 1225 LVNIKETKTESLRNTVDP-KNALFFRMQYLKRALPGVCIKGLPNIFRAVINI-KDDGKKE 1282
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
+++ +G L V++ + +T +N + E+ Q+LGIEA R S+
Sbjct: 1283 LLV----------------EGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSII 1326
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1640
KE++ + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L
Sbjct: 1327 KEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHL 1386
Query: 1641 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
DAA + D + GVSE II+GQ +GTG F L+
Sbjct: 1387 FDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKLV 1421
>gi|224052370|ref|XP_002195476.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Taeniopygia guttata]
Length = 1390
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHVDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 1362 LLHRADK 1368
>gi|395820429|ref|XP_003783569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Otolemur
garnettii]
Length = 1390
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LLKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>gi|169597423|ref|XP_001792135.1| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
gi|160707519|gb|EAT91146.2| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
Length = 1473
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 18/245 (7%)
Query: 1433 DAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDA-VDKMEDDMFLRCIEA 1491
+A++K + L+ +A ++ IR+ +D S + A K + F R +
Sbjct: 1221 NAINKHKP---LKWGKAGTKVRISSSLIRVEIADPSASKKRPAAKASKNHKEYFERVQQV 1277
Query: 1492 -NMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
N++ + ++G + + + KK ++G+++ L +G L L+
Sbjct: 1278 KNLIPHVVIKGYDGCTRAII-------KKETTPNKNGDYEC----ELLVEGYGLKDCLTT 1326
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
++P +T SN + E+ VLGIEA R ++ +E++ V+ + ++ RH+ALL DVMT KG
Sbjct: 1327 PGIEPYKTMSNHVMEVRTVLGIEAARATIMREISAVMG--NMDIDPRHMALLADVMTFKG 1384
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ ITR G+ + L SFE+T D L +AAA + D + GVSE+IIMGQ ++GTG
Sbjct: 1385 DVYGITRFGLQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSESIIMGQSMKLGTG 1444
Query: 1671 CFDLL 1675
++
Sbjct: 1445 ALQVV 1449
>gi|126272809|ref|XP_001364762.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Monodelphis
domestica]
Length = 1390
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVARAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 QGTKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A++
Sbjct: 1362 LLHKADR 1368
>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
Length = 1448
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 1462 IMNSDDSKMQDEEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
++N ++K + + VD ++ +F R L + ++G+ I + +++ + D KK
Sbjct: 1225 LVNIKETKTESLRNTVDP-KNALFFRMQYLKRALPGVCIKGLPNIFRAVINI-KDDGKKE 1282
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
+++ +G L V++ + +T +N + E+ Q+LGIEA R S+
Sbjct: 1283 LLV----------------EGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSII 1326
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1640
KE++ + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L
Sbjct: 1327 KEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHL 1386
Query: 1641 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
DAA + D + GVSE II+GQ +GTG F L+
Sbjct: 1387 FDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKLV 1421
>gi|18977934|ref|NP_579291.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus furiosus DSM
3638]
gi|397652055|ref|YP_006492636.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus furiosus COM1]
gi|22096091|sp|Q8U0M5.1|RPOA2_PYRFU RecName: Full=DNA-directed RNA polymerase subunit A''
gi|18893704|gb|AAL81686.1| DNA-directed RNA polymerase subunit a [Pyrococcus furiosus DSM 3638]
gi|393189646|gb|AFN04344.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus furiosus COM1]
Length = 397
Score = 106 bits (265), Expect = 1e-19, Method: Composition-based stats.
Identities = 82/280 (29%), Positives = 137/280 (48%), Gaps = 51/280 (18%)
Query: 1430 DEEDAVDKMEDDMFLRCIEANMLSDMT-------LQFIRIMNSDDSKMQDE----EDAVD 1478
DEE D+ + + R IE L ++ + F I+ D +++ E V
Sbjct: 123 DEEHRYDRAKAEEVARRIEGTTLENLARSTTLDLINFEFIVEIDPERLERSGLTMEKVVK 182
Query: 1479 KMEDD------------MFLRCIEANMLSDMT----------LQGIEAIGKVYMHLPQTD 1516
K+E + +R +A+ +SD+ L+G+ +GK
Sbjct: 183 KLESSFKSAEFEVDGYTLIVRPKKADKISDLRRFAEKIKKHRLKGLSGVGKT-------- 234
Query: 1517 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
I+ + G+ ++++ T+G++ +VL VDP RT +N+I EI +VLGIEA R
Sbjct: 235 -----IVRKEGD-----EYVIYTEGSNFKQVLKVPGVDPTRTRTNNIHEIAEVLGIEAAR 284
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
++ E+ + +Q GL V+ RH+ L+ D+MT G + I RHG+ + + L R +FE T
Sbjct: 285 NAIIDEIVSTMQEQGLEVDIRHIMLVADMMTLDGIVRPIGRHGVVGEKSSVLARAAFEIT 344
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
V L +AA E D + GV EN+++GQ +GTG L +
Sbjct: 345 VQHLFEAAEKGEVDNLNGVIENVLIGQPVPVGTGMVKLTM 384
>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
WO-1]
Length = 1448
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 1462 IMNSDDSKMQDEEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
++N ++K + + VD ++ +F R L + ++G+ I + +++ + D KK
Sbjct: 1225 LVNIKETKTESLRNTVDP-KNALFFRMQYLKRALPGVCIKGLPNIFRAVINI-KDDGKKE 1282
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
+++ +G L V++ + +T +N + E+ Q+LGIEA R S+
Sbjct: 1283 LLV----------------EGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSII 1326
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1640
KE++ + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L
Sbjct: 1327 KEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHL 1386
Query: 1641 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
DAA + D + GVSE II+GQ +GTG F L+
Sbjct: 1387 FDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKLV 1421
>gi|157841432|gb|ABV83177.1| RNA polymerase 2 [Rhabditoides inermiformis]
Length = 68
Score = 106 bits (265), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/68 (76%), Positives = 60/68 (88%)
Query: 1547 VLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVM 1606
VL+E+ VDPVRT SNDICEIF+VLGIEAVRK++ +EMN V+ F G YVNYRHLALLCDVM
Sbjct: 1 VLAEKHVDPVRTSSNDICEIFEVLGIEAVRKAIXREMNHVISFDGSYVNYRHLALLCDVM 60
Query: 1607 TAKGHLMA 1614
T KGH+MA
Sbjct: 61 TCKGHMMA 68
>gi|449504974|ref|XP_004174828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 2
[Taeniopygia guttata]
Length = 1369
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1175 LPKVVVQGIPEVSRAVIHVDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1220
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1221 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1280
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1281 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1340
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 1341 LLHRADK 1347
>gi|20159759|gb|AAM12032.1| RNA polymerase III subunit RPC155-D [Homo sapiens]
Length = 299
Score = 106 bits (265), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 105 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 150
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 151 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 210
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 211 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 270
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 271 LLHKADRDPNPPKRPL 286
>gi|340711859|ref|XP_003394485.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Bombus
terrestris]
Length = 1385
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ ++G+ ++ + +H + K R + L +G ++ +V++ V
Sbjct: 1188 IPNIVIKGLPSVSRAVIHNDDSSGKTR--------------YKLFVEGNNMREVMATLGV 1233
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+F+ LGIEA R ++ E+ V++ +G+ ++ RH L+ D+MT++G ++
Sbjct: 1234 LGRKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVL 1293
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + L SFE+T D L DAA + + D + GVSE+IIMG +GTG F
Sbjct: 1294 GITRQGLAKMKESVLNLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTGIFK 1353
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 1354 LLHKADK 1360
>gi|73852534|ref|YP_293818.1| putative DNA-dependent RNA polymerase II largest subunit [Emiliania
huxleyi virus 86]
gi|72415250|emb|CAI65487.1| putative DNA-dependent RNA polymerase II largest subunit [Emiliania
huxleyi virus 86]
gi|347600516|gb|AEP15003.1| RNA polymerase beta' subunit [Emiliania huxleyi virus 88]
Length = 1468
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 85/140 (60%), Gaps = 1/140 (0%)
Query: 1536 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1595
+++T T L + + VD + +NDI + LGIEA + E+++ L G Y++
Sbjct: 1274 VIQTRSTILHRAYAIPGVDWTKVMTNDIHNVVNTLGIEAALTMIFNELHSTLTADGSYID 1333
Query: 1596 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG- 1654
RH+ L MT +G++M + RHG+N TG L R SFEET +VL DAA AE++ + G
Sbjct: 1334 PRHIELTASTMTLRGYVMPLNRHGLNNIKTGPLTRSSFEETSEVLKDAAIFAESEDVSGS 1393
Query: 1655 VSENIIMGQLPRMGTGCFDL 1674
VS +I+MGQL +GTG FD+
Sbjct: 1394 VSASIMMGQLSAIGTGRFDV 1413
>gi|448520288|ref|XP_003868270.1| Rpo31 protein [Candida orthopsilosis Co 90-125]
gi|380352609|emb|CCG22836.1| Rpo31 protein [Candida orthopsilosis]
Length = 1443
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 115/212 (54%), Gaps = 17/212 (8%)
Query: 1464 NSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIII 1523
N ++SK + + A D + F +L D+ ++G+ I + +++ + D KK +++
Sbjct: 1222 NVNESKSESLKSASDSLNALFFRMQTLKRVLPDICIKGLPNIFRAVINI-KDDGKKELLV 1280
Query: 1524 TESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEM 1583
+G L V++ + +T +N + E+ ++LGIEA R S+ +E+
Sbjct: 1281 ----------------EGYGLKDVMNTEGIVGTKTTTNHVLEVNEILGIEAARGSIIREI 1324
Query: 1584 NTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDA 1643
+ + +G+ V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DA
Sbjct: 1325 DYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDA 1384
Query: 1644 AAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
A + D + GVSE II+G+ +GTG F L+
Sbjct: 1385 AFFMKKDKIEGVSECIILGKTMSVGTGAFKLV 1416
>gi|357609436|gb|EHJ66444.1| hypothetical protein KGM_02886 [Danaus plexippus]
Length = 1072
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 82/136 (60%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
+G L +V++ +D RT SN+I E+F LGIEA ++ E+ V+ +G+ V+ RH+
Sbjct: 910 EGDGLREVMATYGIDGRRTTSNNILEVFHTLGIEAAAGTIMSEVEAVMAGHGMAVDGRHV 969
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
ALL M A+G ++ ITR+G+ R L SFE+T D L DAA + + D + GVSE I
Sbjct: 970 ALLAAQMCARGEVLGITRYGLARMKESVLNLASFEKTADHLFDAAYYGQRDRIEGVSECI 1029
Query: 1660 IMGQLPRMGTGCFDLL 1675
I+G +GTG LL
Sbjct: 1030 ILGVPAGIGTGVLQLL 1045
>gi|401020|sp|P29158.2|RPOA2_THECE RecName: Full=DNA-directed RNA polymerase subunit A''
gi|48142|emb|CAA47724.1| Subunit A'' of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 393
Score = 106 bits (264), Expect = 1e-19, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 87/145 (60%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
++++ T+G++ +VL VDP RT +NDI EI +VLGIEA R ++ E+ ++ GL
Sbjct: 241 GEYIIRTEGSNFKQVLKVPGVDPTRTRTNDIREIAEVLGIEAARNAIIDEILKTMEEQGL 300
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V+ RH+ L+ D+MT G + I RHGI + L R +FE T L +AA DP+
Sbjct: 301 EVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITTQHLFEAAERGAVDPL 360
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLD 1677
GV EN+++GQ +GTG L ++
Sbjct: 361 NGVVENVLIGQPVPVGTGTVKLAMN 385
>gi|157841424|gb|ABV83171.1| RNA polymerase 2 [Pelodera pseudoteres]
Length = 193
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 59/74 (79%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQGIEAI KVYMH P TD KK
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKK 179
Query: 1520 RIIITESGEFKAIA 1533
R+IITE FKAI
Sbjct: 180 RMIITEEXGFKAIP 193
Score = 103 bits (257), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 62/74 (83%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME+I+++++ GFGDDLN I+ DDNA+KLV R+RI N D+S + E+ VDKMEDD+FLRC
Sbjct: 89 MESIADRVHQGFGDDLNVIYTDDNADKLVFRLRITNQDNSDKGESEEQVDKMEDDVFLRC 148
Query: 61 IEANMLSDMTLQFI 74
IE+NMLSD+TLQ I
Sbjct: 149 IESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
+RI N D+S + E+ VDKMEDD+FLRCIE+NMLSD+TLQ I
Sbjct: 120 LRITNQDNSDKGESEEQVDKMEDDVFLRCIESNMLSDLTLQGI 162
>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1448
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 85/139 (61%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V++ + +T +N + E+ Q+LGIEA R S+ KE++ + +G+ V+
Sbjct: 1283 LLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDP 1342
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + D + GVS
Sbjct: 1343 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEGVS 1402
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F L+
Sbjct: 1403 ECIILGQTMSIGTGSFKLV 1421
>gi|350402598|ref|XP_003486538.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Bombus
impatiens]
Length = 1385
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ ++G+ ++ + +H + K R + L +G ++ +V++ V
Sbjct: 1188 IPNIVIKGLPSVSRAVIHNDDSSGKTR--------------YKLFVEGNNMREVMATLGV 1233
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+F+ LGIEA R ++ E+ V++ +G+ ++ RH L+ D+MT++G ++
Sbjct: 1234 LGRKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVL 1293
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + L SFE+T D L DAA + + D + GVSE+IIMG +GTG F
Sbjct: 1294 GITRQGLAKMKESVLNLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTGIFK 1353
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 1354 LLHKADK 1360
>gi|307595332|ref|YP_003901649.1| DNA-directed RNA polymerase subunit A'' [Vulcanisaeta distributa DSM
14429]
gi|307550533|gb|ADN50598.1| DNA-directed RNA polymerase, subunit A'' [Vulcanisaeta distributa DSM
14429]
Length = 391
Score = 106 bits (264), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 90/147 (61%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+W++ET+GT+L VL+ VD RT SNDI E+ +VLGIEA R + +E+ VL GL
Sbjct: 245 GEWIIETEGTNLEAVLTIDGVDYRRTISNDIHEVAEVLGIEAARTVIMRELKKVLDQQGL 304
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
+ RHL L+ DVMT G + + RHG+ + L R +FE TV L++A+ E +
Sbjct: 305 DTDIRHLMLISDVMTWTGRVRQVGRHGVVGEKESPLARAAFEVTVKNLVEASIKGELENF 364
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAE 1679
RGV E+++ G+ +GTG LL++ E
Sbjct: 365 RGVVESVLAGKYIPIGTGIVQLLMEFE 391
>gi|374724392|gb|EHR76472.1| DNA-directed RNA polymerase subunit A [uncultured marine group II
euryarchaeote]
Length = 519
Score = 106 bits (264), Expect = 1e-19, Method: Composition-based stats.
Identities = 75/209 (35%), Positives = 113/209 (54%), Gaps = 22/209 (10%)
Query: 1470 MQDEEDAVDKMED----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITE 1525
+ EED + E+ M L+ E + DM L+GI I + + L D K
Sbjct: 324 VHSEEDLAELAENPPSYTMLLQLEEK--IRDMRLKGIPNIERANVQL---DDK------- 371
Query: 1526 SGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNT 1585
+GE+ L T G++L +V +D RT++N+I EI+ LGIEA R+++ E+
Sbjct: 372 TGEY------YLSTIGSNLTRVSEIETIDRTRTYTNNIIEIYDFLGIEAARQAIINELQA 425
Query: 1586 VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAA 1645
L L V+ RHL ++ DVMT++G + AI RHG++ L R +FE TV+ L+ A
Sbjct: 426 TLDGARLEVDVRHLLMVADVMTSEGEVRAIGRHGVSGTKHSILARAAFEVTVNHLLKAGI 485
Query: 1646 HAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
E D + GV+ENII+GQ +GTG +L
Sbjct: 486 IGERDYLTGVAENIIVGQPISLGTGSVEL 514
>gi|283481284|emb|CAZ69400.1| putative DNA-dependent RNA polymerase II largest subunit [Emiliania
huxleyi virus 99B1]
Length = 1468
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 85/140 (60%), Gaps = 1/140 (0%)
Query: 1536 LLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVN 1595
+++T T L + + VD + +NDI + LGIEA + E+++ L G Y++
Sbjct: 1274 VIQTRSTILHRAYAIPGVDWTKVMTNDIHNVVNTLGIEAALTMIFNELHSTLTADGSYID 1333
Query: 1596 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG- 1654
RH+ L MT +G++M + RHG+N TG L R SFEET +VL DAA AE++ + G
Sbjct: 1334 PRHIELTASTMTLRGYVMPLNRHGLNNIKTGPLTRSSFEETSEVLKDAAIFAESEDVSGS 1393
Query: 1655 VSENIIMGQLPRMGTGCFDL 1674
VS +I+MGQL +GTG FD+
Sbjct: 1394 VSASIMMGQLSAIGTGRFDV 1413
>gi|156088925|ref|XP_001611869.1| RNA polymerase Rpb1, domain containing protein [Babesia bovis]
gi|154799123|gb|EDO08301.1| RNA polymerase Rpb1, domain containing protein [Babesia bovis]
Length = 1541
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 82/140 (58%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V+ V SN + E+ +VLGIEA R + E+ + Y + ++
Sbjct: 1395 LAVEGYGLQEVIGAAGVKSTGVKSNHVLEVAKVLGIEAARSVIISEIQKCMDAYSIDIDQ 1454
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
R++ LL DVMT +G ++ I R GI + LM SFEET + L +AA H DP++GVS
Sbjct: 1455 RYMKLLGDVMTFRGEVIGINRFGIQKMRASTLMLASFEETNEHLFEAAVHRLRDPIKGVS 1514
Query: 1657 ENIIMGQLPRMGTGCFDLLL 1676
E IIMG+ +GTG FD+LL
Sbjct: 1515 ECIIMGKQVPLGTGAFDVLL 1534
>gi|410079408|ref|XP_003957285.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
gi|372463870|emb|CCF58150.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
Length = 1462
Score = 106 bits (264), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 110/201 (54%), Gaps = 18/201 (8%)
Query: 1476 AVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
A D E+D+F R + L + ++G+ I + +++ + D K+ +++
Sbjct: 1249 AKDPSENDVFYRMQQLRRALPHIVVKGLPEIARAVINI-RDDGKRELLV----------- 1296
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+G L +V+ V +T +N + E+ VLGIEA R S+ E++ + +G+ V
Sbjct: 1297 -----EGYGLREVMCTDGVIGSKTVTNHVLEVSSVLGIEAARSSIIGEIDYTMSNHGMSV 1351
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + G
Sbjct: 1352 DPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDNVEG 1411
Query: 1655 VSENIIMGQLPRMGTGCFDLL 1675
VSE II+GQ +GTG F ++
Sbjct: 1412 VSECIILGQTMSIGTGSFKVV 1432
>gi|296243130|ref|YP_003650617.1| DNA-directed RNA polymerase subunit A' [Thermosphaera aggregans DSM
11486]
gi|296095714|gb|ADG91665.1| DNA-directed RNA polymerase, subunit A' [Thermosphaera aggregans DSM
11486]
Length = 408
Score = 106 bits (264), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 97/152 (63%), Gaps = 5/152 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
K++II + G +++L +G++L +++ +D R ++N++ EI +VLGIEA R +
Sbjct: 238 KKVIIQKRGN-----EYVLIAEGSNLEELMRIPGIDHKRLYTNNVFEIERVLGIEAARAA 292
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ KE+ VL GL V+ RH+ LL D+MT GH+ + R G+ + L R +FE TV
Sbjct: 293 IIKEIKNVLDDQGLDVDIRHIILLADIMTWTGHIRQVGRMGVAGEKQSVLARATFEMTVQ 352
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
L++AAA E+D + G++ENIIMGQ+ +GTG
Sbjct: 353 KLLEAAAMGESDRLYGITENIIMGQVIPVGTG 384
>gi|347482340|gb|AEO98281.1| DNA-directed RNA polymerase subunit A [Emiliania huxleyi virus 203]
gi|347601121|gb|AEP15607.1| hypothetical protein EQVG_00197 [Emiliania huxleyi virus 207]
Length = 418
Score = 106 bits (264), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/150 (40%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 1526 SGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNT 1585
+GE I + +++T T L + + VD + +NDI + LGIEA + E+++
Sbjct: 215 NGEKNEIVN-VIQTRSTILHRAYAIPGVDWTKVMTNDIHNVVNTLGIEAALTVIFNELHS 273
Query: 1586 VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAA 1645
L G Y++ RH+ L MT +G++M + RHG+N TG L R SFEET +VL DAA
Sbjct: 274 TLTADGSYIDPRHIELTASTMTLRGYVMPLNRHGLNNIKTGPLTRSSFEETSEVLKDAAI 333
Query: 1646 HAEADPMRG-VSENIIMGQLPRMGTGCFDL 1674
AE++ + G VS +I+MGQL +GTG FD+
Sbjct: 334 FAESEDVSGSVSASIMMGQLSAIGTGRFDV 363
>gi|383861274|ref|XP_003706111.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Megachile rotundata]
Length = 2015
Score = 106 bits (264), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 103/182 (56%), Gaps = 14/182 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ ++G+ ++ + +H + K R + L +G ++ +V++ V
Sbjct: 1822 IPNIVVKGLPSVSRAVIHNDDSSGKTR--------------YKLFVEGDNMREVMATLGV 1867
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+F+ LGIEA R ++ E+ V++ +G+ ++ RH L+ D+MT++G ++
Sbjct: 1868 SGKKTTSNNTIEVFKTLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVL 1927
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + L SFE+T D L DAA + + D + GVSE+IIMG +GTG F
Sbjct: 1928 GITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQKDVICGVSESIIMGIPVPLGTGIFK 1987
Query: 1674 LL 1675
LL
Sbjct: 1988 LL 1989
>gi|322696737|gb|EFY88525.1| DNA-directed RNA polymerase III largest subunit [Metarhizium acridum
CQMa 102]
Length = 1017
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 18/217 (8%)
Query: 1459 FIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1518
F+RI +DD + + + + DM LR AN L TL + G P+ ++
Sbjct: 780 FVRIRETDDLPPRSKTKSAAEESRDMMLR---ANFLRR-TLPSVPISG-----YPEA-TR 829
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
I TE ++ + +G L ++ V + +N + E Q+LGIEA R +
Sbjct: 830 ALIETTEENTYRVL------VEGYGLRGCMATEGVVGTQVRTNSVMECVQILGIEAARTT 883
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ E+ V+ + G ++ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D
Sbjct: 884 IANEIAEVMGYMG--IDLRHMQLLADVMTYKGEVLGITRFGLSKTRGSVLHLASFEKTAD 941
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
L DA A + D + GVSE+II+GQ +GTG F+++
Sbjct: 942 HLFDAVAGMKTDRIEGVSESIILGQTISVGTGGFEVV 978
>gi|313241408|emb|CBY33677.1| unnamed protein product [Oikopleura dioica]
Length = 1360
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 78/136 (57%)
Query: 1540 DGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHL 1599
DG L VL+ R +D RT SN I ++F++LG+EA R ++ EM + +G++V+ RHL
Sbjct: 1196 DGNDLGGVLATRGIDWSRTSSNHIPKVFEILGVEAARSTIINEMTNTMGHHGIHVDRRHL 1255
Query: 1600 ALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D MT G + TR G+ L SFE+T D+L +AA + + D + G S +
Sbjct: 1256 MMLADYMTYTGPVFGCTRIGLANVSNSPLHLSSFEKTSDILYNAAYYGQRDSLAGPSAAL 1315
Query: 1660 IMGQLPRMGTGCFDLL 1675
I+G +GTG F L
Sbjct: 1316 ILGVPIELGTGLFKLY 1331
>gi|194042171|ref|XP_001929395.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Sus
scrofa]
Length = 1390
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTQTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>gi|161527856|ref|YP_001581682.1| bifunctional DNA-directed RNA polymerase subunit A'/A''
[Nitrosopumilus maritimus SCM1]
gi|160339157|gb|ABX12244.1| DNA-directed RNA polymerase subunit A' [Nitrosopumilus maritimus
SCM1]
Length = 1263
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 90/149 (60%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W+++T G+++ KVL + +D +N++ EI LGIEA R ++ E+N+ L+ GL
Sbjct: 1115 EWVIQTTGSNVAKVLEVKGIDKRNVRTNNVFEIAGTLGIEAARNALINELNSTLEDQGLE 1174
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ R++ L+ D+M ++G++ I RHGI L R +FE TV + AA E + ++
Sbjct: 1175 VDNRYIMLVADLMCSRGYMQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGEIEQLK 1234
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCK 1682
G++EN+I+G +G+G DL + K K
Sbjct: 1235 GITENVIVGSNIPIGSGTVDLYMQVSKKK 1263
>gi|2460208|gb|AAB86536.1| RNA polymerase III largest subunit [Homo sapiens]
Length = 1391
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 15/197 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMN-TVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
RT SN+ E+ + LGIEA R ++ E+ T++ +G+ ++ RH+ LL D+MT KG +
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVVNHGMSIDRRHVMLLSDLMTYKGEV 1301
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+ ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 LGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLF 1361
Query: 1673 DLLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1362 KLLHKADRDPNPPKRPL 1378
>gi|50293727|ref|XP_449275.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata]
Length = 1459
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 84/139 (60%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V+ V +T +N + EIF VLGIEA R S+ E++ + +G+ V+
Sbjct: 1292 LLVEGYGLRDVMCTDGVIGAKTATNHVLEIFNVLGIEAARASIIGEIDYTMSNHGMSVDP 1351
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + GVS
Sbjct: 1352 RHIQLLGDVMTFKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVS 1411
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F ++
Sbjct: 1412 ECIILGQTMSIGTGSFKVV 1430
>gi|325969567|ref|YP_004245759.1| DNA-directed RNA polymerase subunit A'' [Vulcanisaeta moutnovskia
768-28]
gi|323708770|gb|ADY02257.1| DNA-directed RNA polymerase, subunit A'' [Vulcanisaeta moutnovskia
768-28]
Length = 391
Score = 105 bits (263), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 90/147 (61%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
+W++ET+GT+L VL+ VD RT SNDI E+ +VLG+EA R + +E+ VL GL
Sbjct: 245 GEWIIETEGTNLEAVLTIDGVDYRRTISNDIHEVAEVLGVEAARTVIMRELKKVLDQQGL 304
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
+ RHL L+ DVMT G + + RHG+ + L R +FE TV L++A+ E +
Sbjct: 305 DTDLRHLMLVSDVMTWTGKVRQVGRHGVVGEKESPLARAAFEVTVKNLVEASIKGELENF 364
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLDAE 1679
RGV E+++ G+ +GTG LL++ E
Sbjct: 365 RGVVESVLAGKYIPIGTGIVQLLMEFE 391
>gi|449330082|gb|AGE96346.1| DNA-directed RNA polymerase III 160 kDa subunit [Encephalitozoon
cuniculi]
Length = 1349
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 1513 PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1572
PQ + R+II S + + ++E G L+ V++ V + T SN I E+ +VLGI
Sbjct: 1190 PQVN---RVIINSS---RGLYSLVIE--GRGLLNVINIDGVKAINTTSNSITEVEEVLGI 1241
Query: 1573 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1632
EA R + E+ + +G+ ++ RH+ LL D MT +G + ITR GI++ LM S
Sbjct: 1242 EAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGISKMSRSTLMLAS 1301
Query: 1633 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1678
FE+T D L +AA +++D + GVSE+II+G +GTG DL ++
Sbjct: 1302 FEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDLYWNS 1347
>gi|19074431|ref|NP_585937.1| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
[Encephalitozoon cuniculi GB-M1]
Length = 1349
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 1513 PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1572
PQ + R+II S + + ++E G L+ V++ V + T SN I E+ +VLGI
Sbjct: 1190 PQVN---RVIINSS---RGLYSLVIE--GRGLLNVINIDGVKAINTTSNSITEVEEVLGI 1241
Query: 1573 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1632
EA R + E+ + +G+ ++ RH+ LL D MT +G + ITR GI++ LM S
Sbjct: 1242 EAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGISKMSRSTLMLAS 1301
Query: 1633 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1678
FE+T D L +AA +++D + GVSE+II+G +GTG DL ++
Sbjct: 1302 FEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDLYWNS 1347
>gi|336253136|ref|YP_004596243.1| DNA-directed RNA polymerase subunit A'' [Halopiger xanaduensis SH-6]
gi|335337125|gb|AEH36364.1| DNA-directed RNA polymerase, subunit A'' [Halopiger xanaduensis SH-6]
Length = 407
Score = 105 bits (263), Expect = 2e-19, Method: Composition-based stats.
Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 34/244 (13%)
Query: 1452 LSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANM------------------ 1493
++DM +Q ++ +M + E+ + +ED++ ++ I+
Sbjct: 155 VADMRVQISLNEDTLRERMIEPEEVAEIIEDNLGVKAIQQGTQIQFGPEEPSYRDLLQLV 214
Query: 1494 --LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSER 1551
L ++T +GIE I +V + + D +++L T+G++ VL
Sbjct: 215 EELREITFKGIEDISRVVIRREEMDHGDE-------------EFVLYTEGSAFGDVLEIE 261
Query: 1552 DVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKG 1610
VD RT N+I EI + LGIEA R+++ +E N L GL VN RHL L+ D+MT +G
Sbjct: 262 GVDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTNRG 321
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ +I RHGI+ L R +FE TV+ L++AA H E D ++GV+EN+I+G+ ++GTG
Sbjct: 322 EIESIGRHGISGSKDSVLARAAFEVTVNHLLNAAIHGEVDKLQGVTENVIVGKPIKLGTG 381
Query: 1671 CFDL 1674
DL
Sbjct: 382 DVDL 385
>gi|47216067|emb|CAG04806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1319
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + + + + L +G ++ V++ V
Sbjct: 1125 LPKVVVQGIPEVSRAVIHIDEQSGRNK--------------YKLLVEGDNMRAVMATHGV 1170
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+M+ KG ++
Sbjct: 1171 KGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEIL 1230
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1231 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1290
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A+K + PL
Sbjct: 1291 LLHKADKDPSPAKRPL 1306
>gi|316997015|dbj|BAJ52635.1| RNA polymerase III largest subunit [Ephydatia fluviatilis]
Length = 899
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L ++ ++GI ++ + +H E K+ + L +G +L V+ V
Sbjct: 708 LPNVVVKGITSVTRAIIH--------------KDEGKSGNKYKLLVEGMNLQAVIGTVGV 753
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
T SN E+ + LGIEA RK++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 754 KGPATKSNHTAEVEKTLGIEAARKTIIDEIAYTMSSHGMSIDVRHVMLLADLMTFKGEVL 813
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA H + D + GVSE IIMG +GTG F
Sbjct: 814 GITRFGLAKMRESVLMLASFEKTADHLFDAAFHGQEDAINGVSECIIMGIPMSIGTGLFK 873
Query: 1674 LLLDAEK 1680
LL + K
Sbjct: 874 LLHKSAK 880
>gi|443919745|gb|ELU39821.1| DNA-directed RNA polymerase III largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 679
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V++ + +T SN I E+ QVLGIEA RK++ E+ +Q +G+ V+
Sbjct: 544 LLVEGYGLKEVMNTDGIIGEKTTSNHIMEVEQVLGIEAARKTIIGEIQYTMQSHGMNVDP 603
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+ + LM SFE+T D L DAA +A+ D + GVS
Sbjct: 604 RHIMLLGDVMTYKGQVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAGYAKNDNISGVS 663
Query: 1657 ENIIMG 1662
E+IIMG
Sbjct: 664 ESIIMG 669
>gi|308163200|gb|EFO65559.1| DNA-directed RNA polymerase II largest subunit RPB1 [Giardia lamblia
P15]
Length = 2076
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 1532 IADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYG 1591
I++ L+TDG+ L+ +L++ +VD RT++ ++ EI+++LGIEA R K++ L
Sbjct: 1661 ISELYLQTDGSDLLWILTQPEVDFTRTWTTNVREIYEILGIEAARALFIKQVRATLDKVD 1720
Query: 1592 LYVNYRHLALLCDVMTAKGH---LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1648
L N H +L D+M+++ +++I R+G+ +TG L + +FE ++ AAA
Sbjct: 1721 L--NIHHYLILADIMSSRPQNNKMISINRYGMQATNTGVLAQATFERPGATVLKAAAFGV 1778
Query: 1649 ADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
DP++ VS ++MG+ GTGCFDLLL+
Sbjct: 1779 VDPLKSVSSCVVMGKQGDFGTGCFDLLLN 1807
>gi|392512733|emb|CAD25541.2| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
[Encephalitozoon cuniculi GB-M1]
Length = 1316
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 1513 PQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGI 1572
PQ + R+II S + + ++E G L+ V++ V + T SN I E+ +VLGI
Sbjct: 1157 PQVN---RVIINSS---RGLYSLVIE--GRGLLNVINIDGVKAINTTSNSITEVEEVLGI 1208
Query: 1573 EAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1632
EA R + E+ + +G+ ++ RH+ LL D MT +G + ITR GI++ LM S
Sbjct: 1209 EAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGISKMSRSTLMLAS 1268
Query: 1633 FEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDA 1678
FE+T D L +AA +++D + GVSE+II+G +GTG DL ++
Sbjct: 1269 FEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDLYWNS 1314
>gi|268535924|ref|XP_002633097.1| C. briggsae CBR-RPC-1 protein [Caenorhabditis briggsae]
Length = 1402
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 18/221 (8%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
+I++ + M + K+ M ++ ++ + L ++ ++GI ++ + +H D KK
Sbjct: 1179 KIISHGKTMMAIRPPSTSKLSKTMTMQMLKYS-LGNVVVKGISSVNRCVIH---ADEKK- 1233
Query: 1521 IIITESGEFKAIAD-WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
D + L +GT VLS VDP +T N+ + +VLGIEA R +
Sbjct: 1234 ------------GDCYSLLVEGTDFRSVLSSVGVDPKKTNFNNALVVAEVLGIEAARTCI 1281
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+ + +G+ ++ RH+ LL DVMT +G ++ ITR+G+ + L+ SFE+T+D
Sbjct: 1282 INEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDH 1341
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
L +AA ++ D + GVSE IIMG +GTG F L+ EK
Sbjct: 1342 LFEAAFFSQKDVIHGVSECIIMGTPMTVGTGTFKLMQKYEK 1382
>gi|159107886|ref|XP_001704218.1| DNA-directed RNA polymerase II largest subunit RPB1 [Giardia lamblia
ATCC 50803]
gi|21842235|gb|AAM77743.1|AF510651_1 RNA polymerase II subunit Rpb1 [Giardia intestinalis]
gi|157432274|gb|EDO76544.1| DNA-directed RNA polymerase II largest subunit RPB1 [Giardia lamblia
ATCC 50803]
Length = 2076
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 1532 IADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYG 1591
I++ L+TDG+ L+ +L++ +VD RT++ ++ EI+++LGIEA R K++ L
Sbjct: 1661 ISELYLQTDGSDLLWILTQPEVDFTRTWTTNVREIYEILGIEAARALFIKQIRATLDKVD 1720
Query: 1592 LYVNYRHLALLCDVMTAKGH---LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1648
L N H +L D+M+++ +++I R+G+ +TG L + +FE ++ AAA
Sbjct: 1721 L--NIHHYLILADIMSSRPQNNKMISINRYGMQATNTGVLAQATFERPGATVLKAAAFGV 1778
Query: 1649 ADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
DP++ VS ++MG+ GTGCFDLLL+
Sbjct: 1779 VDPLKSVSSCVVMGKQGDFGTGCFDLLLN 1807
>gi|57641016|ref|YP_183494.1| DNA-directed RNA polymerase subunit A'' [Thermococcus kodakarensis
KOD1]
gi|73917871|sp|Q5JE34.1|RPOA2_PYRKO RecName: Full=DNA-directed RNA polymerase subunit A''
gi|57159340|dbj|BAD85270.1| DNA-directed RNA polymerase, subunit A'' [Thermococcus kodakarensis
KOD1]
Length = 391
Score = 105 bits (262), Expect = 2e-19, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 18/178 (10%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+G+ +GK II + G+ ++++ T+G++ +VL VDP RT
Sbjct: 223 LKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQVLKVPGVDPTRT 264
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+N+I EI +VLGIEA R ++ E+ + ++ GL V+ RH+ L+ D+MT G + I RH
Sbjct: 265 RTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRH 324
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
GI + L R +FE T L AA E DP+ GV EN+++GQ +GTG L +
Sbjct: 325 GIVGEKASVLARAAFEITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAM 382
>gi|448363835|ref|ZP_21552430.1| DNA-directed RNA polymerase subunit A'' [Natrialba asiatica DSM
12278]
gi|445645419|gb|ELY98423.1| DNA-directed RNA polymerase subunit A'' [Natrialba asiatica DSM
12278]
Length = 399
Score = 105 bits (262), Expect = 2e-19, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 107/182 (58%), Gaps = 14/182 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+T +GIE + +V + + D + GE ++L T+G++ VL V
Sbjct: 217 LRDITFKGIEEVSRVVIRREELD--------DGGE-----QFVLYTEGSAFGDVLEIDGV 263
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT N+I EI + LGIEA R+++ +E N L GL VN RHL L+ D+MT +G +
Sbjct: 264 DASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTNRGEI 323
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L++AA H E D + GV+EN+I+G+ ++GTG
Sbjct: 324 ESIGRHGISGSKDSVLARAAFEVTVNHLLNAAIHGEIDELDGVAENVIVGKPIKLGTGDV 383
Query: 1673 DL 1674
DL
Sbjct: 384 DL 385
>gi|57157183|dbj|BAD83621.1| RNA polymerase II subunit Rpb1 [Giardia intestinalis]
Length = 2076
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 1532 IADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYG 1591
I++ L+TDG+ L+ +L++ +VD RT++ ++ EI+++LGIEA R K++ L
Sbjct: 1661 ISELYLQTDGSDLLWILTQPEVDFTRTWTTNVREIYEILGIEAARALFIKQIRATLDKVD 1720
Query: 1592 LYVNYRHLALLCDVMTAKGH---LMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1648
L N H +L D+M+++ +++I R+G+ +TG L + +FE ++ AAA
Sbjct: 1721 L--NIHHYLILADIMSSRPQNNKMISINRYGMQATNTGVLAQATFERPGATVLKAAAFGV 1778
Query: 1649 ADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
DP++ VS ++MG+ GTGCFDLLL+
Sbjct: 1779 VDPLKSVSSCVVMGKQGDFGTGCFDLLLN 1807
>gi|448411892|ref|ZP_21576248.1| DNA-directed RNA polymerase subunit A'' [Halosimplex carlsbadense
2-9-1]
gi|445669826|gb|ELZ22434.1| DNA-directed RNA polymerase subunit A'' [Halosimplex carlsbadense
2-9-1]
Length = 401
Score = 105 bits (262), Expect = 3e-19, Method: Composition-based stats.
Identities = 75/194 (38%), Positives = 112/194 (57%), Gaps = 16/194 (8%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+ +GIE + +V + +TD + +++L T+G++L VL V
Sbjct: 220 LRDIVFKGIEEVSRVVIRKEETDDGE--------------EFVLYTEGSALGDVLGLDGV 265
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT N+I EI + LGIEA R+++ E L+ GL VN RHL L+ D+MT +G +
Sbjct: 266 DASRTTCNNIHEIHRQLGIEAAREAIINETMNTLEEQGLDDVNIRHLMLVADIMTNRGSI 325
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L+DAA H E D + GV+EN+I+G+ ++GTG
Sbjct: 326 ESIGRHGISGNKESVLARAAFEVTVNHLLDAAIHGEVDDLNGVTENVIVGKPIKLGTGDV 385
Query: 1673 DLLLDAEKCKDGIE 1686
DL + A + DG E
Sbjct: 386 DLRMAAGR-GDGAE 398
>gi|255076723|ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
gi|226517297|gb|ACO63290.1| predicted protein [Micromonas sp. RCC299]
Length = 1479
Score = 105 bits (262), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 17/181 (9%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ +QGI ++ R +I + G+ K + L +GT+L V+ V
Sbjct: 1219 VPNVIVQGIPSV-------------SRAVINDVGQGK----YNLVVEGTNLQAVMGVEGV 1261
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
T +N + E + LGIEA R + KE+N ++ +G+ ++ RH LL DVMT KG ++
Sbjct: 1262 KGTHTTTNHVMEAERTLGIEAARSCIIKEINDTMKAHGMSIDARHSMLLADVMTYKGEVL 1321
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA H D + GVSE IIMG +GTG F
Sbjct: 1322 GITRFGMAKMKDSVLMLASFEKTTDHLFDAALHGRTDTIDGVSECIIMGIPMPVGTGMFK 1381
Query: 1674 L 1674
L
Sbjct: 1382 L 1382
>gi|25145495|ref|NP_501127.2| Protein RPC-1 [Caenorhabditis elegans]
gi|351059526|emb|CCD66619.1| Protein RPC-1 [Caenorhabditis elegans]
Length = 1400
Score = 105 bits (262), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 117/215 (54%), Gaps = 16/215 (7%)
Query: 1461 RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1520
+I+ + M + K+ M ++ ++ + L+++ ++GI ++ + +H D KK
Sbjct: 1179 KIVAHGKTMMAIRPPSTSKLSKTMTMQILKYS-LANVVVKGIPSVNRCVIH---ADEKK- 1233
Query: 1521 IIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1580
G+F + L +GT VLS VDP +T N+ + VLGIEA R +
Sbjct: 1234 ------GDF-----YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCII 1282
Query: 1581 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1640
E+ + +G+ ++ RH+ LL DVMT +G ++ ITR+G+ + L+ SFE+T+D L
Sbjct: 1283 NEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHL 1342
Query: 1641 MDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
+AA ++ D + GVSE IIMG +GTG F L+
Sbjct: 1343 FEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLM 1377
>gi|403416877|emb|CCM03577.1| predicted protein [Fibroporia radiculosa]
Length = 1403
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L KV+ + + +T SN I E+ QVLGIEA R+++ E+ + +G+ ++
Sbjct: 1246 LLVEGYGLQKVMVTQGIIGEQTTSNHIIEVAQVLGIEAARRTIINEIQYTMSSHGMSIDP 1305
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVM+ KG ++ ITR G+ + LM SFE+T D L DAAA+ + D + GVS
Sbjct: 1306 RHVMLLGDVMSYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAAAYGKTDSIAGVS 1365
Query: 1657 ENIIMGQLPRMGTG 1670
E+IIMG P + TG
Sbjct: 1366 ESIIMGN-PAVMTG 1378
>gi|218884684|ref|YP_002429066.1| DNA-directed RNA polymerase subunit A'' [Desulfurococcus
kamchatkensis 1221n]
gi|218766300|gb|ACL11699.1| DNA-directed RNA polymerase, subunit A'' [Desulfurococcus
kamchatkensis 1221n]
Length = 406
Score = 105 bits (261), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/161 (37%), Positives = 102/161 (63%), Gaps = 5/161 (3%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL +++II + G+ ++++ ++G++L +++ VD R ++N+I EI +V
Sbjct: 228 LHLKGIKEIRKVIIQKRGD-----EYVIISEGSNLEEIMRIEGVDWRRVYTNNIHEIERV 282
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R+++ KE+ +L GL V+ RH+ LL D+MT GH+ I R G+ + L
Sbjct: 283 LGIEAARQAIIKEIKEILDDQGLDVDIRHIMLLADMMTWTGHVRQIGRMGVAGEKPSVLA 342
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
R +FE TV L+++AA +E D + GV+ENII+GQ +GTG
Sbjct: 343 RATFEMTVQKLLESAATSEEDRLYGVTENIIIGQTIPVGTG 383
>gi|383320562|ref|YP_005381403.1| DNA-directed RNA polymerase subunit A'' [Methanocella conradii HZ254]
gi|379321932|gb|AFD00885.1| DNA-directed RNA polymerase, subunit A'' [Methanocella conradii
HZ254]
Length = 388
Score = 105 bits (261), Expect = 3e-19, Method: Composition-based stats.
Identities = 60/142 (42%), Positives = 90/142 (63%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
++++ T G++L KV+ VD RT +N+I EI +VLGIEA R ++ E L GL
Sbjct: 235 EYVIYTQGSALKKVIHFEGVDAARTKTNNINEIAEVLGIEAARNAIINEALDTLSEQGLT 294
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ L+ D+MT G + I RHGI+ + L R +FE TV+ L+DAA E D +
Sbjct: 295 VDIRHIMLVADMMTIDGEVKQIGRHGISGEKASVLSRAAFEVTVNHLLDAAVAGEVDELT 354
Query: 1654 GVSENIIMGQLPRMGTGCFDLL 1675
GV+EN+I+GQ ++GTG +L+
Sbjct: 355 GVTENVIVGQPIQLGTGDVELV 376
>gi|58268624|ref|XP_571468.1| DNA-directed RNA polymerase iii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|57227703|gb|AAW44161.1| DNA-directed RNA polymerase iii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1466
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L G L +V+ VD ++T +N + E QVLGIEA R ++ E+ T ++ +G+ ++
Sbjct: 1293 LLVTGYGLSEVMGTEGVDGLKTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDP 1352
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+ + LM SFE+T D L DA+ +++ D ++GVS
Sbjct: 1353 RHVMLLGDVMTYKGEVLGITRFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVS 1412
Query: 1657 ENIIMG-QLPRMGTGCFDLLLDAEK 1680
E IIMG P GT ++ A
Sbjct: 1413 ECIIMGTPAPGCGTSLASIVTPAPP 1437
>gi|448347129|ref|ZP_21536008.1| DNA-directed RNA polymerase subunit A'' [Natrinema altunense JCM
12890]
gi|445631466|gb|ELY84698.1| DNA-directed RNA polymerase subunit A'' [Natrinema altunense JCM
12890]
Length = 398
Score = 105 bits (261), Expect = 3e-19, Method: Composition-based stats.
Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+T +GIE + +V + + ++ +++L T+G++ VL V
Sbjct: 217 LRDITFKGIEEVSRVVIRREELET-------------GTEEFVLYTEGSAFGDVLEIEGV 263
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT N+I EI + LGIEA R+++ +E N L GL VN RHL L+ D+MT +G +
Sbjct: 264 DASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTNRGEI 323
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L++AA H E D + GV+EN+I+G+ ++GTG
Sbjct: 324 ESIGRHGISGSKESVLARAAFEVTVNHLLNAAIHGEVDELDGVTENVIVGKPIKLGTGDV 383
Query: 1673 DLLLDAEKCKDG 1684
DL + + G
Sbjct: 384 DLRMGSTTSGSG 395
>gi|134113452|ref|XP_774751.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1466
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L G L +V+ VD ++T +N + E QVLGIEA R ++ E+ T ++ +G+ ++
Sbjct: 1293 LLVTGYGLSEVMGTEGVDGLKTKTNHVMETQQVLGIEAARSTIYNEIQTTMKSHGMSIDP 1352
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+ + LM SFE+T D L DA+ +++ D ++GVS
Sbjct: 1353 RHVMLLGDVMTYKGEVLGITRFGVQKMKDSVLMLASFEKTTDHLFDASLYSKKDEIQGVS 1412
Query: 1657 ENIIMG-QLPRMGTGCFDLLLDAEK 1680
E IIMG P GT ++ A
Sbjct: 1413 ECIIMGTPAPGCGTSLASIVTPAPP 1437
>gi|363753734|ref|XP_003647083.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae DBVPG#7215]
gi|356890719|gb|AET40266.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae DBVPG#7215]
Length = 1459
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 85/139 (61%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L V++ V +T +N E+F+VLGIEA R S+ E++ + +G+ V+
Sbjct: 1292 LLVEGYGLRDVMTTDGVIGYKTKTNHFLEVFEVLGIEAARTSIIDEIDYTMSNHGMSVDP 1351
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D + GVS
Sbjct: 1352 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVS 1411
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F ++
Sbjct: 1412 ECIILGQTMSIGTGSFKVV 1430
>gi|307196534|gb|EFN78064.1| DNA-directed RNA polymerase III subunit RPC1 [Harpegnathos saltator]
Length = 1334
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 91/141 (64%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+ L +G +L +V++ + +T SN+ E+++ LGIEA R ++ E+ +V++ + + +
Sbjct: 1160 YKLFVEGDNLREVMATTGILSKKTTSNNTMEVYKALGIEAARTTIMTEIESVMENHAISI 1219
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
++RHL L+ D+MT++G ++ ITR G+ + L SFE+T D L DAA + ++D + G
Sbjct: 1220 DHRHLMLVADLMTSRGEVLGITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQSDTICG 1279
Query: 1655 VSENIIMGQLPRMGTGCFDLL 1675
VSE+IIMG +GTG F LL
Sbjct: 1280 VSESIIMGIPIPVGTGLFTLL 1300
>gi|20978713|sp|Q976A6.2|RPOA2_SULTO RecName: Full=DNA-directed RNA polymerase subunit A''
gi|342306128|dbj|BAK54217.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus tokodaii str. 7]
Length = 392
Score = 105 bits (261), Expect = 3e-19, Method: Composition-based stats.
Identities = 83/259 (32%), Positives = 135/259 (52%), Gaps = 26/259 (10%)
Query: 1418 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAV 1477
+ I N + DEE DK D ++ I +S + L IRI + DD + +
Sbjct: 155 VDITNMSITIQLDEEMLKDKGVDPSSVKKI----ISKLKLGKIRIEDIDDYTFTIYFEEI 210
Query: 1478 DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLL 1537
D + +R L + ++GI+ I +R I+ + G+ ++++
Sbjct: 211 DNISALFKMR----EKLLNTKIKGIKGI-------------RRAIVQKKGD-----EYVI 248
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
TDG++L V+ + VD + +N+I EI GIEA R+++ +E+ VL+ GL V+ R
Sbjct: 249 ITDGSNLEGVIGIKGVDVNKIQTNNIHEIADTFGIEAAREAIAREIKKVLEEQGLDVDMR 308
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
H+ L+ D+MT G + I RHG+ + + L R +FE TV L+DAAA E + +GV E
Sbjct: 309 HILLVADIMTRTGVVRQIGRHGVTGEKSSVLARAAFEVTVKHLLDAAARGEMEEFKGVVE 368
Query: 1658 NIIMGQLPRMGTGCFDLLL 1676
NII+GQ R+GTG +L +
Sbjct: 369 NIIIGQPIRLGTGIVELTM 387
>gi|407464207|ref|YP_006775089.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
gi|407047395|gb|AFS82147.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
Length = 1263
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W+++T G+++ KVL + +D +N++ EI LGIEA R S+ E+N L GL
Sbjct: 1115 EWVIQTTGSNIAKVLEVKGIDKKNVRTNNVFEIAGTLGIEAARNSLIDELNHTLGDQGLE 1174
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ R++ L+ D+M ++G++ I RHGI L R +FE TV + AA E + ++
Sbjct: 1175 VDNRYIMLVSDLMCSRGYMQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGEVEQLK 1234
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEKCK 1682
G++EN+I+G +G+G DL + K K
Sbjct: 1235 GITENVIVGSNIPIGSGTVDLYMQVSKKK 1263
>gi|448737565|ref|ZP_21719605.1| DNA-directed RNA polymerase subunit A'' [Halococcus thailandensis JCM
13552]
gi|445803709|gb|EMA53992.1| DNA-directed RNA polymerase subunit A'' [Halococcus thailandensis JCM
13552]
Length = 393
Score = 105 bits (261), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 1516 DSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAV 1575
D R++I + E + +++L T+G++ VL VD RT N+I E+++ LG+EA
Sbjct: 221 DEVSRVVIRKE-EVEGNEEFILYTEGSAFGDVLDIEGVDASRTTCNNIHEVYRNLGVEAA 279
Query: 1576 RKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1634
R+++ E L+ GL VN RHL L+ D+MTA+G + +I RHGI+ L R +FE
Sbjct: 280 RETIIDETMNTLEEQGLGDVNIRHLMLVADIMTAEGTIESIGRHGISGNKDSVLARAAFE 339
Query: 1635 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
TV+ L+DAA H E D + GV+EN+I+G+ ++GTG +L
Sbjct: 340 VTVNHLLDAAVHGEVDDLDGVTENVIVGKPIKLGTGDVNL 379
>gi|451770412|ref|NP_001263425.1| DNA-directed RNA polymerase III subunit RPC1 [Danio rerio]
Length = 1390
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ FK L +G ++ V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKQK--------FK------LLVEGDNMRSVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+ +T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+M+ KG ++
Sbjct: 1242 NGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEIL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL + + D PL
Sbjct: 1362 LLHRSNREADPPRRPL 1377
>gi|328710964|ref|XP_001945328.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Acyrthosiphon pisum]
Length = 1366
Score = 105 bits (261), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 110/191 (57%), Gaps = 14/191 (7%)
Query: 1489 IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVL 1548
I + L + ++GI A+ + +H + D ++GE + + L +G +L +V+
Sbjct: 1187 IYSQNLQKVVIKGISAVSRAVIH--EED--------DNGEIR----YKLLVEGDNLREVM 1232
Query: 1549 SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTA 1608
+ V R SN+ +++ LGIEA R ++ E+++V+ +G+ ++ RH L+ D+MT+
Sbjct: 1233 ATPGVIGKRCTSNNTFQVWNALGIEASRATIISEIDSVMGNHGISIDPRHPMLIADLMTS 1292
Query: 1609 KGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMG 1668
+G L+ ITR G+++ L SFE+T D L DAA + + D + GVSE+IIMG +G
Sbjct: 1293 RGELLGITRFGLSKMKESVLNLASFEKTSDHLFDAAYYGQTDTINGVSESIIMGIPINLG 1352
Query: 1669 TGCFDLLLDAE 1679
TG F L+ ++
Sbjct: 1353 TGFFKLIYKSK 1363
>gi|297619551|ref|YP_003707656.1| DNA-directed RNA polymerase subunit A'' [Methanococcus voltae A3]
gi|297378528|gb|ADI36683.1| DNA-directed RNA polymerase, subunit A'' [Methanococcus voltae A3]
Length = 387
Score = 105 bits (261), Expect = 4e-19, Method: Composition-based stats.
Identities = 63/170 (37%), Positives = 97/170 (57%), Gaps = 3/170 (1%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + R+II + +++L ++G++L +V VDP +T +N+I EI V
Sbjct: 215 IHLKGVSNITRVIIRKE---DGSEEYILYSEGSNLKEVFEIEGVDPSKTTTNNIIEIQDV 271
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LG+EA R ++ EM L GL V+ RHL ++ D+MT G + I RHGI + L
Sbjct: 272 LGVEAARNAIIYEMAATLSNQGLTVDPRHLMMVSDLMTTDGVVKPIGRHGIGGEKASVLA 331
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
R +FEETV L A+ +D + GV ENII+G+ +GTGC ++ + E
Sbjct: 332 RAAFEETVKHLYSASMRGYSDELDGVVENIIVGKPISIGTGCINVGIKRE 381
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,669,170,023
Number of Sequences: 23463169
Number of extensions: 958738266
Number of successful extensions: 3817320
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4274
Number of HSP's successfully gapped in prelim test: 2608
Number of HSP's that attempted gapping in prelim test: 3728834
Number of HSP's gapped (non-prelim): 45276
length of query: 1764
length of database: 8,064,228,071
effective HSP length: 157
effective length of query: 1607
effective length of database: 8,675,477,834
effective search space: 13941492879238
effective search space used: 13941492879238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 85 (37.4 bits)