BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6965
(1764 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/295 (78%), Positives = 249/295 (84%), Gaps = 14/295 (4%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RI+ITE+GEFKAI +WLLETDGTS+MKVLSERDVDP+RT SNDICEIFQVLGIEAVRKSV
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEMN VLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIP--LATGMMGGP 1697
LMDAAAHAE DPMRGVSENIIMGQLP+MGTGCFDLLLDAEKC+ GIEIP L M+GG
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGG- 1489
Query: 1698 AGMFFGSAATPSSMIHNPLQTPH---NTS--LTNATHQSRDKAFAPSELFLSPDS 1747
A MF G +TPS P TP NT + H S A P SP +
Sbjct: 1490 AAMFIGGGSTPSM---TPPMTPWANCNTPRYFSPPGHVS---AMTPGGPSFSPSA 1538
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKIN GFG+DLNCIFNDDNA+KLVLRIRIMN++++K QDE++AVDKMEDDMFLRC
Sbjct: 1220 MEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Query: 61 IEANMLSDMTLQFI 74
IEANMLSDMTLQ I
Sbjct: 1280 IEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMN++++K QDE++AVDKMEDDMFLRCIEANMLSDMTLQ I
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a
PE=1 SV=3
Length = 1970
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A
PE=1 SV=2
Length = 1970
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/293 (68%), Positives = 233/293 (79%), Gaps = 6/293 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQGIE I KVYMHLPQTD+KK
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKK 1318
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+IIITE GEFKA+ +W+LETDG SLM+VLSE+DVDPVRT SNDI EIF VLGIEAVRK++
Sbjct: 1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+E+ V+ F G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDV
Sbjct: 1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMG--GP 1697
LM+AAAH E+DPM+GVSENI++GQL GTGCFDLLLDAEKCK G+EIP +G GP
Sbjct: 1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGP 1498
Query: 1698 AGMFFGSAATPSSMIHNPLQTPHN---TSLTNATHQSRDKAFAPSELFLSPDS 1747
GMFFGSA +P I +P TP N T A S P SP +
Sbjct: 1499 TGMFFGSAPSPMGGI-SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+EKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSD++KMQ+EE+ VDKM+DD+FLRC
Sbjct: 1228 MEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRC 1287
Query: 61 IEANMLSDMTLQFI 74
IE+NML+DMTLQ I
Sbjct: 1288 IESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 158
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 200
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 242
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 284
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 326
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 368
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 410
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 452
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 494
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 536
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 578
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 620
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 662
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 704
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 746
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 788
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 830
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 872
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 914
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 956
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 998
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1040
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1082
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1124
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1166
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1208
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1250
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1292
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1334
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1376
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 1418
IRIMNSD++KMQ+EE+ VDKM+DD+FLRCIE+NML+DMTLQ I
Sbjct: 1259 IRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGI 1301
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/291 (64%), Positives = 232/291 (79%), Gaps = 10/291 (3%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KK
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT G FK++ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRK++
Sbjct: 1311 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1370
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
E+EM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+
Sbjct: 1371 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1430
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+AA HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP M GG
Sbjct: 1431 LMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGG--- 1487
Query: 1700 MFFGS-AATPSSMIHNPLQTPHNTSLTNATHQSRDKAFAPSELFLSPDSRY 1749
F+GS A +PS+ +P +P N+ +T T+ A++P+ +SP + +
Sbjct: 1488 -FYGSFAGSPSNREFSPAHSPWNSGVT-PTYAG--AAWSPTTGGMSPGAGF 1534
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 10/91 (10%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG+D++ I+ DDNAEKLV R+RI D + Q+E+ VDKMEDD+FLRC
Sbjct: 1222 MEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQ--VDKMEDDVFLRC 1279
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 1280 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 10/60 (16%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+RI D + Q+E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAGEDKGEAQEEQ--VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/285 (65%), Positives = 224/285 (78%), Gaps = 6/285 (2%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQGI AI KVYM+ P TD KK
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
RIIIT G FKA+ADW+LETDGT+L++VLSER +DPVRT SNDICEIF+VLGIEAVRKS+
Sbjct: 1312 RIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSI 1371
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
EKEM+ V+ F G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+
Sbjct: 1372 EKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1431
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGPAG 1699
LM+A+ HAE DP++GVSENI++GQL R GTGCFDL+LD EKCK G+EIP +MG AG
Sbjct: 1432 LMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNV-VMG--AG 1488
Query: 1700 MFFGSAATPSSMIHNPLQTPHNTSLTN--ATHQSRDKAFAPSELF 1742
++ G A S +P +P N+ +T + S +PS F
Sbjct: 1489 IYGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSPSAGF 1533
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 9/91 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
ME I+++I+ GFG D++ I+ DDNAEKLV R+RI +D + +E+ VDKMEDD+FLRC
Sbjct: 1222 MEMIADRIHGGFGQDVHTIYTDDNAEKLVFRLRIAG-EDKGAEGQEEQVDKMEDDVFLRC 1280
Query: 61 IEANMLSDMTLQFIRIM--------NSDDSK 83
IEANMLSD+TLQ I + N+DD K
Sbjct: 1281 IEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 167
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 209
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 251
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 293
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 335
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 377
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 419
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 461
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 503
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 545
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 587
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 629
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 671
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 713
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 755
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 797
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 839
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 881
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 923
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 965
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1007
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1049
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1091
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1133
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1175
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1217
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1259
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1301
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1343
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1385
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIM--------NSDDSK 1427
+RI +D + +E+ VDKMEDD+FLRCIEANMLSD+TLQ I + N+DD K
Sbjct: 1253 LRIAG-EDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1311
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 257 bits (656), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 137/269 (50%), Positives = 179/269 (66%), Gaps = 22/269 (8%)
Query: 1460 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1519
IR++ S ++K D +D DD FLR IE+NMLS+M L+GI+ I KV+M +TD K
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFM---RTDDKI 1307
Query: 1520 RIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSV 1579
+ TE+G F +W+L+TDG SL++V+S DVD RT SNDI EI QVLGIEAVR ++
Sbjct: 1308 PKV-TENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNAL 1366
Query: 1580 EKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1639
KE+ V+ F G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++
Sbjct: 1367 LKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEI 1426
Query: 1640 LMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA--------- 1690
LMDAA +E D ++GV+ENII+GQLP +GTG F++ L+ + K+ I L
Sbjct: 1427 LMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPD 1486
Query: 1691 TGMMGGPAGMFFGSAATPSSMIHNPLQTP 1719
T P+ + + TP HNP P
Sbjct: 1487 TPGSQTPSYSYGDGSTTP---FHNPYDAP 1512
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 12 FGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 71
FG LNCIF+DDNAEKL+LRIR++ S ++K D +D DD FLR IE+NMLS+M L
Sbjct: 1237 FGLSLNCIFSDDNAEKLILRIRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVL 1290
Query: 72 QFIR-----IMNSDDSKMQDEEDAVDKMEDDMFL 100
+ I+ M +DD + E+ + ++ L
Sbjct: 1291 RGIKGIKKVFMRTDDKIPKVTENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 116 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 170
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 171 EEDAVDKMEDDMFL 184
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 158 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 212
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 213 EEDAVDKMEDDMFL 226
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 200 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 254
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 255 EEDAVDKMEDDMFL 268
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 242 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 296
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 297 EEDAVDKMEDDMFL 310
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 284 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 338
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 339 EEDAVDKMEDDMFL 352
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 326 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 380
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 381 EEDAVDKMEDDMFL 394
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 368 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 422
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 423 EEDAVDKMEDDMFL 436
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 410 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 464
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 465 EEDAVDKMEDDMFL 478
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 452 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 506
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 507 EEDAVDKMEDDMFL 520
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 494 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 548
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 549 EEDAVDKMEDDMFL 562
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 536 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 590
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 591 EEDAVDKMEDDMFL 604
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 578 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 632
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 633 EEDAVDKMEDDMFL 646
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 620 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 674
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 675 EEDAVDKMEDDMFL 688
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 662 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 716
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 717 EEDAVDKMEDDMFL 730
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 704 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 758
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 759 EEDAVDKMEDDMFL 772
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 746 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 800
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 801 EEDAVDKMEDDMFL 814
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 788 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 842
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 843 EEDAVDKMEDDMFL 856
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 830 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 884
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 885 EEDAVDKMEDDMFL 898
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 872 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 926
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 927 EEDAVDKMEDDMFL 940
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 914 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 968
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 969 EEDAVDKMEDDMFL 982
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 956 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1010
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1011 EEDAVDKMEDDMFL 1024
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 998 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1052
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1053 EEDAVDKMEDDMFL 1066
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1040 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1094
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1095 EEDAVDKMEDDMFL 1108
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1082 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1136
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1137 EEDAVDKMEDDMFL 1150
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1124 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1178
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1179 EEDAVDKMEDDMFL 1192
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1166 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1220
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1221 EEDAVDKMEDDMFL 1234
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1208 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1262
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1263 EEDAVDKMEDDMFL 1276
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1250 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1304
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1305 EEDAVDKMEDDMFL 1318
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1292 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1346
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1347 EEDAVDKMEDDMFL 1360
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1334 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1388
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1389 EEDAVDKMEDDMFL 1402
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1376 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIR-----IMNSDDSKMQD 1430
IR++ S ++K D +D DD FLR IE+NMLS+M L+ I+ M +DD +
Sbjct: 1257 IRMVESQETKGTDNDD------DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKV 1310
Query: 1431 EEDAVDKMEDDMFL 1444
E+ + ++ L
Sbjct: 1311 TENGGFGVREEWIL 1324
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 177/262 (67%), Gaps = 12/262 (4%)
Query: 1460 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1517
IRIMN + K +QDE EDD+FL+ IE+NML++M L+GI I KV++ +
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFI---KQVR 1309
Query: 1518 KKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1577
K R E G FK +W+L+T+G +L+ V+ DVDP RT SN + EI +VLGIEAVR+
Sbjct: 1310 KSRF--DEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRR 1367
Query: 1578 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1637
++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETV
Sbjct: 1368 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETV 1427
Query: 1638 DVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLATGMMGGP 1697
D+L+DAAA+AE D +RGV+ENI++GQL +GTG +L L+ E K+ IE+ L + M G
Sbjct: 1428 DILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLE 1487
Query: 1698 AGMFFGSAATPSSMIHNPLQTP 1719
GM + + H + +P
Sbjct: 1488 FGMTPARSPVSGTPYHEGMMSP 1509
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 7/77 (9%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK--MQDEEDAVDKMEDDMFLRCI 61
I+EKIN F DDL CIFNDDNA+KL+LRIRIMN + K +QDE EDD+FL+ I
Sbjct: 1230 IAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDES-----AEDDVFLKKI 1284
Query: 62 EANMLSDMTLQFIRIMN 78
E+NML++M L+ I +N
Sbjct: 1285 ESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 116 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 162
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 158 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 204
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 200 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 246
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 242 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 288
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 284 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 330
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 326 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 372
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 368 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 414
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 410 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 456
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 452 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 498
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 494 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 540
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 536 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 582
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 578 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 624
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 620 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 666
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 662 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 708
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 704 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 750
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 746 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 792
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 788 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 834
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 830 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 876
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 872 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 918
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 914 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 960
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 956 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1002
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 998 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1044
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1040 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1086
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1082 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1128
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1124 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1170
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1166 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1212
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1208 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1254
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1250 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1296
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1292 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1338
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1334 IRIMNSDDSK--MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMN 1380
IRIMN + K +QDE EDD+FL+ IE+NML++M L+ I +N
Sbjct: 1258 IRIMNDEGPKGELQDES-----AEDDVFLKKIESNMLTEMALRGIPDIN 1301
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 233 bits (595), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 159/238 (66%), Gaps = 21/238 (8%)
Query: 1480 MEDDMFLRCIEANMLSDMTLQGIEAIGKVYM--HLPQTDSKKRIIITESGEFKAIADWLL 1537
+E+D+FL+ IE +ML ++L+G+ I +VYM H K + E G F+ +W+L
Sbjct: 1260 IEEDVFLKTIEGHMLESISLRGVPNITRVYMMEH-------KIVRQIEDGTFERADEWVL 1312
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
ETDG +L + ++ VD RT+SN EI Q+LGIEA R ++ KE+ V++F G YVNYR
Sbjct: 1313 ETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYR 1372
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
HLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEETV++LMDAAA E D +G+SE
Sbjct: 1373 HLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISE 1432
Query: 1658 NIIMGQLPRMGTGCFDLLLDAE---KCKDGIEIP-LATGMMGG---PAGMFFGSAATP 1708
NI++GQL MGTG FD+ LD + G +P LA MG P G A TP
Sbjct: 1433 NIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEG-----AGTP 1485
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 4 ISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEA 63
++ KI F DL I+++DNA+KL++R RI+ DD K +D+++ + E+D+FL+ IE
Sbjct: 1215 VAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMI---EEDVFLKTIEG 1271
Query: 64 NMLSDMTLQFI----RIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFI 116
+ML ++L+ + R+ + ++ ED + D+ L N+ MT++ +
Sbjct: 1272 HMLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGV 1328
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments) OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1 PE=3 SV=2
Length = 1579
Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 144/197 (73%), Gaps = 5/197 (2%)
Query: 1481 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETD 1540
E+D L+ IEA+ML ++L+GI+ I +V+M K + E+GEFK +W+LETD
Sbjct: 1089 EEDQILKRIEAHMLESISLRGIQGITRVFMM-----QHKLSLPDETGEFKQGQEWVLETD 1143
Query: 1541 GTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
G +L V++ VD RT+SN+ EI VLGIEA R ++ KE+ V+ F G YVNYRH+A
Sbjct: 1144 GVNLADVMAVPGVDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 1203
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENII 1660
LL DVMTA+GHLMAITRHGINR DTGALMRCSFEETV++L++A A AE D G+SEN++
Sbjct: 1204 LLVDVMTARGHLMAITRHGINRADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVV 1263
Query: 1661 MGQLPRMGTGCFDLLLD 1677
+GQL +GTG FD+++D
Sbjct: 1264 LGQLAPLGTGAFDVMVD 1280
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 5/75 (6%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M ++EKI+ FG+DL I++DD A+KL++R R++ D K DE+ VD E+D L+
Sbjct: 1042 MAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVR--DPKSLDED--VD-AEEDQILKR 1096
Query: 61 IEANMLSDMTLQFIR 75
IEA+ML ++L+ I+
Sbjct: 1097 IEAHMLESISLRGIQ 1111
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
+D FL+ + LS + L+GIE I KVYM + K +++G+F + W+L+TDG
Sbjct: 1865 EDTFLKKLMEQCLSTLKLRGIENITKVYMR----EESKITYDSDNGKFVRSSHWVLDTDG 1920
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
+L + VD +T SNDI EIF+VLGIEAVR+++ KE+ TV+ F YVNYRHL++
Sbjct: 1921 CNLENIFCAPQVDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1980
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
LCDVMT KG+LM+ITRHGINR D G L++CSFEETV++L++AAA A+ D +RG++ENI++
Sbjct: 1981 LCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIML 2040
Query: 1662 GQLPRMGTGCFDLLLDAEKCKD 1683
GQL ++GTG FD+++D +K D
Sbjct: 2041 GQLCKIGTGSFDIIIDNQKLND 2062
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 143/203 (70%), Gaps = 5/203 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML +TL+G++ I +V M + D K + +E+GE+ I +
Sbjct: 1250 DAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMM--KYDRK---VPSETGEYHKIPE 1304
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V+S VDP R ++N +I VLGIEA R ++ KE+ V+ G YV
Sbjct: 1305 WVLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYV 1364
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L +A A AE D G
Sbjct: 1365 NYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCSG 1424
Query: 1655 VSENIIMGQLPRMGTGCFDLLLD 1677
VSEN+I+GQ+ +GTG FD+++D
Sbjct: 1425 VSENVILGQMAPIGTGSFDVMID 1447
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + EKI F +DL I+++DNAEKL++R R++ D K D E + E+D L+
Sbjct: 1209 MGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVR--DPKTLDAE---AEAEEDHMLKK 1263
Query: 61 IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMED 96
IE ML +TL+ ++ +M D K+ E K+ +
Sbjct: 1264 IENTMLESITLRGVQDITRVVMMKYDRKVPSETGEYHKIPE 1304
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 203 bits (517), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Query: 1475 DAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIAD 1534
DA + E+D L+ IE ML ++TL+G+E I +V M + D K + + +GE+ +
Sbjct: 1249 DAETEAEEDHMLKKIENTMLENITLRGVENIERVVMM--KYDRK---VPSPTGEYVKEPE 1303
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W+LETDG +L +V++ +DP R ++N +I +VLGIEA R ++ KE+ V+ G YV
Sbjct: 1304 WVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NYRH+ALL DVMT +G L ++TRHG NR +TGALMRCSFEETV++L +A A AE D RG
Sbjct: 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAE 1679
VSEN+I+GQ+ +GTG FD+++D E
Sbjct: 1424 VSENVILGQMAPIGTGAFDVMIDEE 1448
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 1 MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
M + E+I F +DL I+++DN EKL++R R++ DA + E+D L+
Sbjct: 1209 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL------DAETEAEEDHMLKK 1262
Query: 61 IEANMLSDMTLQFI 74
IE ML ++TL+ +
Sbjct: 1263 IENTMLENITLRGV 1276
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 117/172 (68%), Gaps = 5/172 (2%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
K++ I+E + K +W L+TDG L ++L V+ T SND+ EI + LGIEA R+S
Sbjct: 1254 KKVYISEDKDRK---EWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARES 1310
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E+ V+ G YVNYRH++LL DVMT +G+L ITRHG+N+ GAL R SFEETV+
Sbjct: 1311 ILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVE 1370
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEIPLA 1690
+L+DAA +E + RG++ENI+MGQL MGTG +++LD +K IPL+
Sbjct: 1371 ILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDK--AIPLS 1420
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 148/258 (57%), Gaps = 25/258 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++++ IE M +++ + IR+ S+ + D++ K++ R
Sbjct: 1233 MKDVKQAILRVDESYI---IETGMANNVRQRTIRM----RSRYNEGADSIPKLK-----R 1280
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT+L +
Sbjct: 1281 EIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGTALRRA 1335
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ ++ V+T SN + E+ +LGIEA R + E+ YGL +NYRH
Sbjct: 1336 FIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYT 1395
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RGVS N+
Sbjct: 1396 ILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANL 1455
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
++G R+GTG FDL+L+
Sbjct: 1456 VLGNQARVGTGLFDLVLN 1473
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 148/258 (57%), Gaps = 25/258 (9%)
Query: 1428 MQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLR 1487
M+D + A+ ++++ IE M +++ + IR+ S+ + D++ K++ R
Sbjct: 1233 MKDVKQAILRVDESYI---IETGMANNVRQRTIRM----RSRYNEGADSIPKLK-----R 1280
Query: 1488 CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKV 1547
I A +L+ + L+GI + + + D+ + + +G+ W ++TDGT+L +
Sbjct: 1281 EIPA-LLARVHLRGIPGVRRALL----KDTTEFTVDQATGKMSGNKIWAIDTDGTALRRA 1335
Query: 1548 L-------SERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLA 1600
+ ++ V+T SN + E+ +LGIEA R + E+ YGL +NYRH
Sbjct: 1336 FIGVVGEDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYT 1395
Query: 1601 LLCDVMTAKGHLMAITRHGINRQDT-GALMRCSFEETVDVLMDAAAHAEADPMRGVSENI 1659
+L D + G+LMA++R GINR DT G LMRCSFEETV VLM AA+ E DP+RGVS N+
Sbjct: 1396 ILVDTICQHGYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANL 1455
Query: 1660 IMGQLPRMGTGCFDLLLD 1677
++G R+GTG FDL+L+
Sbjct: 1456 VLGNQARVGTGLFDLVLN 1473
>sp|A6UV49|RPOA2_META3 DNA-directed RNA polymerase subunit A'' OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 3/168 (1%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + R+I+ + + +++L ++G++L V VD VRT SN+I EI V
Sbjct: 215 IHLKGVPNIPRVIVKKD---DTMGEYILHSEGSNLSAVFEIDGVDMVRTTSNNIVEIQDV 271
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ E++ VL GL V+ RHL ++ D+MTA G + +I RHG++ + L
Sbjct: 272 LGIEAARNAIINEISGVLNQQGLNVDIRHLMVIADIMTADGSVKSIGRHGLSGEKASVLA 331
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
R +FEETV L AA +D + GV ENII+G+ MGTGC D+ +D
Sbjct: 332 RAAFEETVKHLYSAAEKGHSDKLSGVVENIIVGKPISMGTGCVDVYID 379
>sp|Q58446|RPOA2_METJA DNA-directed RNA polymerase subunit A'' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA2 PE=3 SV=1
Length = 859
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 106/186 (56%), Gaps = 18/186 (9%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
+ ++ L+GI I +R+++ + G +++L T G++L +V V
Sbjct: 683 IKNIQLKGIPGI-------------ERVLVKKEG-----GEYVLYTQGSNLREVFKIDGV 724
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
D RT +N+I EI +VLGIEA R ++ EM L+ GL V+ RHL L+ D+MTA G +
Sbjct: 725 DTTRTITNNIIEIQEVLGIEAARNAIINEMRNTLEQQGLEVDIRHLMLVADIMTADGEVK 784
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
I RHG+ + L R +FEETV L AA + D ++GV EN+I+G+ +GTGC +
Sbjct: 785 PIGRHGVAGEKGSVLARAAFEETVKHLYAAAERGDVDKLKGVIENVIVGKPIYLGTGCVE 844
Query: 1674 LLLDAE 1679
L +D E
Sbjct: 845 LTIDRE 850
>sp|Q8PUR2|RPOA2_METMA DNA-directed RNA polymerase subunit A'' OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=rpoA2 PE=3 SV=1
Length = 408
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 20/198 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++TL+GIE I KR+++ + GE ++ L T+G++L +VL
Sbjct: 217 AKSIHNVTLKGIEGI-------------KRVVVRKEGE-----EYTLYTEGSALREVLQF 258
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI++VLGIEA R ++ KE L+ GL V+ RH+ L+ D+MT+ G
Sbjct: 259 EGVDRTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSDG 318
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA D ++GV+ENII+GQ RMGTG
Sbjct: 319 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGTG 378
Query: 1671 CFDLLLDAEKCKDGIEIP 1688
D+ L + K + +E+P
Sbjct: 379 --DVHLISRKAEKVVEVP 394
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 90/146 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
+++ +G +L ++ +D +RT NDI I+++ G+EA R + KE ++ G +
Sbjct: 1316 YVIIAEGINLSEMSQINGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFS 1375
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
NY+H+ +L D +T G L+ + RHG N+ DT R SFE+TV+ L+ AA E+D MR
Sbjct: 1376 NYQHIEILADAITHMGGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGESDHMRS 1435
Query: 1655 VSENIIMGQLPRMGTGCFDLLLDAEK 1680
VS I++G L GTGCFDLLLD +K
Sbjct: 1436 VSARIMVGALINGGTGCFDLLLDHKK 1461
>sp|P11514|RPOA2_SULAC DNA-directed RNA polymerase subunit A'' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA2 PE=3 SV=2
Length = 393
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR I+ + G+ ++++ TDG++L +++ VD + +N+I E+ +VLGIEA R+
Sbjct: 236 KRAIVQKKGD-----EYVIITDGSNLEGIMNVTGVDINKIQTNNIHEVEEVLGIEAAREL 290
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E+ VL+ GL V+ RH+ L+ D+MT G + I RHG+ + + L R +FE TV
Sbjct: 291 ISREIKKVLEEQGLDVDMRHIVLVSDIMTRTGDIRQIGRHGVTGEKSSVLARAAFEVTVK 350
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDL 1674
L+DAAA E + +GV ENII+GQ R+GTG +L
Sbjct: 351 HLLDAAARGEREEFKGVIENIIIGQPIRLGTGIVEL 386
>sp|Q8TRB8|RPOA2_METAC DNA-directed RNA polymerase subunit A'' OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpoA2
PE=3 SV=1
Length = 397
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 72/180 (40%), Positives = 107/180 (59%), Gaps = 18/180 (10%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A + ++TL+GIE I KR+++ + GE ++ L T+G++L VL
Sbjct: 214 AKSIHNVTLKGIEGI-------------KRVVVRKEGE-----EYTLYTEGSALRDVLQF 255
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD RT +N+I EI++VLGIEA R ++ KE L+ GL V+ RH+ L+ D+MT G
Sbjct: 256 EGVDKTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTCDG 315
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ I RHGI+ + R +FE TV+ L+DA + D ++GV+ENII+GQ RMGTG
Sbjct: 316 EVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGDVDQLQGVTENIIVGQPIRMGTG 375
>sp|O28390|RPOA2_ARCFU DNA-directed RNA polymerase subunit A'' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoA2 PE=3 SV=1
Length = 380
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR+II + + +++L T+G++L K++ + VD RT +N+I EI++VLGIEA R +
Sbjct: 222 KRVIIRKEED-----EYVLYTEGSNLKKIMKVKGVDFTRTTTNNIYEIYEVLGIEAARNA 276
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E L+ GL V+ RH+ L+ DVMTA G L I RHG+ + L R +FE TV+
Sbjct: 277 IIREALDTLEEQGLEVDVRHIMLVADVMTADGELRQIGRHGVAGEKQSILARAAFEMTVN 336
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAA E D +RG++ENII+GQ ++GTG +L+L
Sbjct: 337 NLLDAAVRGEEDHLRGITENIIVGQPIKLGTGDVELVL 374
>sp|Q8ZYQ7|RPOA2_PYRAE DNA-directed RNA polymerase subunit A'' OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rpoA2 PE=3 SV=1
Length = 379
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 74/195 (37%), Positives = 109/195 (55%), Gaps = 17/195 (8%)
Query: 1482 DDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDG 1541
D + +R I+ +L + + GI+ + KV + Q DSK +W + T+G
Sbjct: 200 DILKIRKIKDKILQ-IKISGIKGVRKVVL---QYDSKND-------------EWYIVTEG 242
Query: 1542 TSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLAL 1601
T+L VL +VDP RT+SND+ E+ +VLGIEA R V +E+ VL+ GL V+ RH+ L
Sbjct: 243 TNLEAVLQLEEVDPTRTYSNDLHEVEEVLGIEATRALVAQEIKRVLEEQGLDVDIRHMYL 302
Query: 1602 LCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIM 1661
+ D MT G L I RHG+ L R +FE TV L++A+ E + +GV E+II
Sbjct: 303 VADAMTWSGRLRPIGRHGVVGSKESPLARAAFEVTVKTLIEASVRGEDELFKGVVESIIA 362
Query: 1662 GQLPRMGTGCFDLLL 1676
G+ +GTG LL+
Sbjct: 363 GKYVPIGTGIVRLLM 377
>sp|Q979F5|RPOA2_THEVO DNA-directed RNA polymerase subunit A'' OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rpoA2 PE=3 SV=1
Length = 508
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 87/141 (61%)
Query: 1535 WLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1594
W++ T G++L VL +VDP RT++NDI EI VLGIEA R ++ E LQ GL V
Sbjct: 359 WVIYTQGSNLKDVLEVDEVDPTRTYTNDIVEIATVLGIEAARNAILNEAQRTLQEQGLNV 418
Query: 1595 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRG 1654
+ RHL L+ D+MT G + A+ R GI+ + + L R +FE T L+ A E D + G
Sbjct: 419 DVRHLMLVADMMTFSGSVRAVGRTGISGRKSSVLARAAFEITTKHLLRAGIMGEVDKLAG 478
Query: 1655 VSENIIMGQLPRMGTGCFDLL 1675
V+ENII+GQ +GTG D++
Sbjct: 479 VAENIIVGQPITLGTGAVDII 499
>sp|Q03586|RPOA2_THEAC DNA-directed RNA polymerase subunit A'' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA2 PE=1 SV=1
Length = 508
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 17/207 (8%)
Query: 1470 MQDEEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGE 1528
M+D + K + + F + + + +T++GI I K+ I E E
Sbjct: 309 MEDSGQIIIKPQQESFKKLYLLQEQIKGLTIKGISGI------------KRAIARVEGKE 356
Query: 1529 FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQ 1588
+ W++ T G++L VL +VDP RT++NDI EI VLGIEA R ++ E LQ
Sbjct: 357 HR----WVIYTQGSNLKDVLEVDEVDPTRTYTNDIVEIANVLGIEAARNAILNEALRTLQ 412
Query: 1589 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE 1648
GL V+ RHL L+ D+MT G + A+ R GI+ + + L R +FE T L+ A E
Sbjct: 413 EQGLNVDVRHLMLVADMMTFSGSVRAVGRTGISGRKSSVLARAAFEITTKHLLRAGIMGE 472
Query: 1649 ADPMRGVSENIIMGQLPRMGTGCFDLL 1675
D + GV+ENII+GQ +GTG D++
Sbjct: 473 VDKLAGVAENIIVGQPITLGTGAVDII 499
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 87/139 (62%)
Query: 1537 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1596
L +G L +V+S V +T +N I E+FQVLGIEA R S+ E++ + +G+ V+
Sbjct: 1292 LLVEGYGLKEVMSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDP 1351
Query: 1597 RHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVS 1656
RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DA+ + + D + GVS
Sbjct: 1352 RHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVS 1411
Query: 1657 ENIIMGQLPRMGTGCFDLL 1675
E II+GQ +GTG F L+
Sbjct: 1412 ECIILGQTMNIGTGAFKLV 1430
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 18/202 (8%)
Query: 1475 DAVDKMEDDMFLRCIE-ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIA 1533
A + E+D+F R + L D+ ++G+ I + +++ + D K+ +++
Sbjct: 1247 SAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINI-RDDGKRELLV---------- 1295
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+G L V+ V RT +N + E+F VLGIEA R S+ +E+N + +G+
Sbjct: 1296 ------EGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMS 1349
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ LL DVMT KG ++ ITR G+++ L SFE+T D L DAA + + D +
Sbjct: 1350 VDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVE 1409
Query: 1654 GVSENIIMGQLPRMGTGCFDLL 1675
GVSE II+GQ +GTG F ++
Sbjct: 1410 GVSECIILGQTMSIGTGSFKVV 1431
>sp|A4YCR0|RPOA2_METS5 DNA-directed RNA polymerase subunit A'' OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR II + G+ ++++ TDG++L VL + VD R +N++ E+ VLG+EA R+
Sbjct: 235 KRAIIRKKGD-----EYVIITDGSNLEGVLGVKGVDVSRIETNNLHEVESVLGVEAAREL 289
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E+ VL+ GL V+ RH+ L+ D+MT G + I RHG+ + T L R +FE TV
Sbjct: 290 ITREIKRVLEEQGLDVDIRHIELVSDIMTRTGEVRQIGRHGVTGEKTSVLARAAFEVTVK 349
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAAA + + +GV ENII+GQ ++GTG +LL+
Sbjct: 350 HLLDAAARGDMEEFKGVVENIIIGQPIKLGTGMVELLM 387
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 28/221 (12%)
Query: 1456 TLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRC-IEANMLSDMTLQGIEAIGKVYMHLPQ 1514
TLQ I + S D K E +++ R +L D+ + GI I
Sbjct: 1184 TLQQIHVHTSSDGKSS---------ETEVYYRLQTYKRVLPDVVVAGIPTI--------- 1225
Query: 1515 TDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEA 1574
+ +I ESG+ + L +GT L V++ + +T +N + E+ VLGIEA
Sbjct: 1226 ---NRSVINQESGKIE------LFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEA 1276
Query: 1575 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1634
R S+ E+ + +GL V+ RH+ LL DVMT KG ++ ITR G+ + L SFE
Sbjct: 1277 ARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFE 1336
Query: 1635 ETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLL 1675
+T D L +AAA D + G+SE I++G+L +GT F L+
Sbjct: 1337 KTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLI 1377
>sp|P14247|RPOA2_METVS DNA-directed RNA polymerase subunit A'' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA2 PE=3 SV=2
Length = 386
Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K I +++L ++G++L +V VD +T +N+I EI V
Sbjct: 215 IHLKGVPNIKRVIIR-----KEIDEYVLYSEGSNLKEVFEIDGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LG+EA R ++ +EM+ L GL V+ RHL ++ D+MT G + I RHGI + L
Sbjct: 270 LGVEAARNAIIREMDATLGNQGLTVDKRHLMMVADLMTTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAE 1679
R +FEETV L A+ D + GV ENII+G+ MGTGC ++ + E
Sbjct: 330 RAAFEETVKHLYSASMRGYVDDLSGVVENIIVGKPISMGTGCINVCIKKE 379
>sp|Q6LXI7|RPOA2_METMP DNA-directed RNA polymerase subunit A'' OS=Methanococcus maripaludis
(strain S2 / LL) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K + +++L ++G+++ +V VD +T +N+I EI V
Sbjct: 215 IHLKGVQNIKRVIIR-----KEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ EM+ L GL V+ RHL ++ D+M G + I RHGI + L
Sbjct: 270 LGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
R +FEETV L A+ D + GV ENII+G+ MGTGC D+ +D
Sbjct: 330 RAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTGCIDICID 377
>sp|O27126|RPOA2_METTH DNA-directed RNA polymerase subunit A'' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA2 PE=3 SV=1
Length = 451
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 91/147 (61%)
Query: 1534 DWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1593
+W++ T+G++L VL E VD VRT +NDI EI VLGIEA R ++ E ++ GL
Sbjct: 305 EWVIHTEGSNLGAVLKEEGVDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLT 364
Query: 1594 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMR 1653
V+ RH+ L+ D+MTA G + +I RHGI+ + L R SFEET L+ A+ E D +
Sbjct: 365 VDIRHIMLVADMMTADGSVKSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHLT 424
Query: 1654 GVSENIIMGQLPRMGTGCFDLLLDAEK 1680
G+ ENII+GQ +GTG +++ K
Sbjct: 425 GIIENIIIGQPIPLGTGSVSVVMKERK 451
>sp|A4FWF5|RPOA2_METM5 DNA-directed RNA polymerase subunit A'' OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K + +++L ++G+++ +V VD +T +N+I EI V
Sbjct: 215 IHLKGVQNIKRVIIR-----KEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ EM+ L GL V+ RHL ++ D+M G + I RHGI + L
Sbjct: 270 LGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
R +FEETV L A+ D + GV ENII+G+ MGTGC D+ +D
Sbjct: 330 RAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPIAMGTGCIDICID 377
>sp|A6VGV0|RPOA2_METM7 DNA-directed RNA polymerase subunit A'' OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 6/178 (3%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K + +++L ++G+++ +V VD +T +N+I EI V
Sbjct: 215 IHLKGVQNIKRVIIR-----KEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ EM+ L GL V+ RHL ++ D+M G + I RHGI + L
Sbjct: 270 LGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKDGIEI 1687
R +FEETV L A+ D + GV ENII+G+ MGTGC D+ +D +K ++G E+
Sbjct: 330 RAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPIAMGTGCIDVCID-KKYEEGKEL 386
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEKCKDGIEIPL 1689
LL A++ + + PL
Sbjct: 1362 LLHKADRDPNPPKRPL 1377
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus GN=POLR3A
PE=2 SV=1
Length = 1390
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
RT SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A +
Sbjct: 1362 LLHKANR 1368
>sp|A9A9U9|RPOA2_METM6 DNA-directed RNA polymerase subunit A'' OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 1510 MHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQV 1569
+HL + KR+II K + +++L ++G+++ +V VD +T +N+I EI V
Sbjct: 215 IHLKGVQNIKRVIIR-----KEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDV 269
Query: 1570 LGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALM 1629
LGIEA R ++ EM+ L GL V+ RHL ++ D+M G + I RHGI + L
Sbjct: 270 LGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLA 329
Query: 1630 RCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
R +FEETV L A+ D + GV ENII+G+ MGTGC D+ +D
Sbjct: 330 RAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPIAMGTGCIDVCID 377
>sp|C5A207|RPOA2_THEGJ DNA-directed RNA polymerase subunit A'' OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rpoA2 PE=3 SV=1
Length = 391
Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 101/179 (56%), Gaps = 18/179 (10%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+G+ +GK II + G+ ++++ T+G++ +VL VDP RT
Sbjct: 223 LKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQVLKVPGVDPTRT 264
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+N+I EI VLGIEA R ++ +E+ ++ GL V+ RH+ L+ D+MT G + I RH
Sbjct: 265 RTNNIWEIADVLGIEAARNAIIEEIVNTMREQGLEVDIRHIMLVADMMTLDGVIRPIGRH 324
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLD 1677
GI + + L R +FE T L +AA E DP+ GV EN+++GQ +GTG L ++
Sbjct: 325 GIVGEKSSVLARAAFEITTQHLFEAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLTMN 383
>sp|P0CX07|RPOA2_HALSA DNA-directed RNA polymerase subunit A'' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA2 PE=3
SV=1
Length = 397
Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats.
Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+ +GIE + +V + E + +++L T+G++ K L V
Sbjct: 221 LRDIVFKGIEEVSRV--------------VIRREETERGEEFVLYTEGSAFKKALKIEGV 266
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT N+I E+ + LGIEA R+++ E T L+ GL VN RHL L+ D+MT G +
Sbjct: 267 DATRTSCNNIHEVHKTLGIEAAREAIINETMTTLEEQGLDDVNIRHLMLVADIMTNDGTI 326
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L+DAA H E+D + GV EN+I+G+ R+GTG
Sbjct: 327 ESIGRHGISGNKNSVLARAAFEVTVNHLLDAAIHGESDDLDGVIENVIVGKPVRLGTGDV 386
Query: 1673 DLLLDAEKCKD 1683
DL + A + D
Sbjct: 387 DLRMGATQTSD 397
>sp|B0R8D3|RPOA2_HALS3 DNA-directed RNA polymerase subunit A'' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA2 PE=1 SV=1
Length = 397
Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats.
Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L D+ +GIE + +V + E + +++L T+G++ K L V
Sbjct: 221 LRDIVFKGIEEVSRV--------------VIRREETERGEEFVLYTEGSAFKKALKIEGV 266
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY-VNYRHLALLCDVMTAKGHL 1612
D RT N+I E+ + LGIEA R+++ E T L+ GL VN RHL L+ D+MT G +
Sbjct: 267 DATRTSCNNIHEVHKTLGIEAAREAIINETMTTLEEQGLDDVNIRHLMLVADIMTNDGTI 326
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+I RHGI+ L R +FE TV+ L+DAA H E+D + GV EN+I+G+ R+GTG
Sbjct: 327 ESIGRHGISGNKNSVLARAAFEVTVNHLLDAAIHGESDDLDGVIENVIVGKPVRLGTGDV 386
Query: 1673 DLLLDAEKCKD 1683
DL + A + D
Sbjct: 387 DLRMGATQTSD 397
>sp|P09847|RPOA2_METTW DNA-directed RNA polymerase subunit A'' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA2 PE=1 SV=2
Length = 449
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 1491 ANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSE 1550
A+ + + + G++ IGKV + K +W++ T+G++L E
Sbjct: 280 ADKVRKLQISGVKNIGKVVIR------------------KEDDEWVIHTEGSNLGDRFKE 321
Query: 1551 RDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKG 1610
VD VRT +NDI EI VLGIEA R ++ E ++ GL V+ RH+ L+ D+MTA G
Sbjct: 322 EGVDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADG 381
Query: 1611 HLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTG 1670
+ +I RHGI+ + L R SFEET L+ A+ E D + G+ ENII+GQ +GTG
Sbjct: 382 SVKSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTG 441
Query: 1671 CFDLLL 1676
+++
Sbjct: 442 SVSVIM 447
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 1494 LSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDV 1553
L + +QGI + + +H+ + K++ + L +G +L V++ V
Sbjct: 1196 LPKVVVQGIPEVSRAVIHIDEQSGKEK--------------YKLLVEGDNLRAVMATHGV 1241
Query: 1554 DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLM 1613
+T SN+ E+ + LGIEA R ++ E+ + +G+ ++ RH+ LL D+MT KG ++
Sbjct: 1242 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVL 1301
Query: 1614 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFD 1673
ITR G+ + LM SFE+T D L DAA + D + GVSE IIMG +GTG F
Sbjct: 1302 GITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFK 1361
Query: 1674 LLLDAEK 1680
LL A+K
Sbjct: 1362 LLHKADK 1368
>sp|B6YT17|RPOA2_THEON DNA-directed RNA polymerase subunit A'' OS=Thermococcus onnurineus
(strain NA1) GN=rpoA2 PE=3 SV=1
Length = 391
Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 30/245 (12%)
Query: 1443 FLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMT---- 1498
F+ I+ L L +I +S + E VD + +R + LSD+
Sbjct: 159 FIVEIDPERLEKSGLDMEKIQKKLESSFKSAEFEVDGYT--LIMRPKKVTKLSDLRRLSE 216
Query: 1499 ------LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERD 1552
L+G+ +GK II + G+ ++++ T+G++ ++L
Sbjct: 217 KVKKHRLKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQILKVPG 258
Query: 1553 VDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHL 1612
VDP RT +N+I EI +VLGIEA R ++ +E+ ++ GL V+ RH+ L+ D+MT G +
Sbjct: 259 VDPTRTRTNNIHEIAEVLGIEAARNAIIEEIVNTMRDQGLEVDVRHIMLVADMMTLDGVI 318
Query: 1613 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCF 1672
+ I RHGI + L R +FE T L +AA E DP+ GV EN+++GQ +GTG
Sbjct: 319 LPIGRHGIVGEKASVLARAAFEITTQHLFEAAERGETDPLNGVVENVLIGQPVPVGTGIV 378
Query: 1673 DLLLD 1677
L ++
Sbjct: 379 KLAMN 383
>sp|Q8U0M5|RPOA2_PYRFU DNA-directed RNA polymerase subunit A'' OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoA2
PE=1 SV=1
Length = 397
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 82/280 (29%), Positives = 137/280 (48%), Gaps = 51/280 (18%)
Query: 1430 DEEDAVDKMEDDMFLRCIEANMLSDMT-------LQFIRIMNSDDSKMQDE----EDAVD 1478
DEE D+ + + R IE L ++ + F I+ D +++ E V
Sbjct: 123 DEEHRYDRAKAEEVARRIEGTTLENLARSTTLDLINFEFIVEIDPERLERSGLTMEKVVK 182
Query: 1479 KMEDD------------MFLRCIEANMLSDMT----------LQGIEAIGKVYMHLPQTD 1516
K+E + +R +A+ +SD+ L+G+ +GK
Sbjct: 183 KLESSFKSAEFEVDGYTLIVRPKKADKISDLRRFAEKIKKHRLKGLSGVGKT-------- 234
Query: 1517 SKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVR 1576
I+ + G+ ++++ T+G++ +VL VDP RT +N+I EI +VLGIEA R
Sbjct: 235 -----IVRKEGD-----EYVIYTEGSNFKQVLKVPGVDPTRTRTNNIHEIAEVLGIEAAR 284
Query: 1577 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1636
++ E+ + +Q GL V+ RH+ L+ D+MT G + I RHG+ + + L R +FE T
Sbjct: 285 NAIIDEIVSTMQEQGLEVDIRHIMLVADMMTLDGIVRPIGRHGVVGEKSSVLARAAFEIT 344
Query: 1637 VDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
V L +AA E D + GV EN+++GQ +GTG L +
Sbjct: 345 VQHLFEAAEKGEVDNLNGVIENVLIGQPVPVGTGMVKLTM 384
>sp|P29158|RPOA2_THECE DNA-directed RNA polymerase subunit A'' OS=Thermococcus celer
GN=rpoA2 PE=3 SV=2
Length = 393
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 87/145 (60%)
Query: 1533 ADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGL 1592
++++ T+G++ +VL VDP RT +NDI EI +VLGIEA R ++ E+ ++ GL
Sbjct: 241 GEYIIRTEGSNFKQVLKVPGVDPTRTRTNDIREIAEVLGIEAARNAIIDEILKTMEEQGL 300
Query: 1593 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPM 1652
V+ RH+ L+ D+MT G + I RHGI + L R +FE T L +AA DP+
Sbjct: 301 EVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITTQHLFEAAERGAVDPL 360
Query: 1653 RGVSENIIMGQLPRMGTGCFDLLLD 1677
GV EN+++GQ +GTG L ++
Sbjct: 361 NGVVENVLIGQPVPVGTGTVKLAMN 385
>sp|Q5JE34|RPOA2_PYRKO DNA-directed RNA polymerase subunit A'' OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoA2 PE=3
SV=1
Length = 391
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 18/178 (10%)
Query: 1499 LQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRT 1558
L+G+ +GK II + G+ ++++ T+G++ +VL VDP RT
Sbjct: 223 LKGLSGVGKT-------------IIRKEGD-----EYVIYTEGSNFKQVLKVPGVDPTRT 264
Query: 1559 FSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1618
+N+I EI +VLGIEA R ++ E+ + ++ GL V+ RH+ L+ D+MT G + I RH
Sbjct: 265 RTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRH 324
Query: 1619 GINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
GI + L R +FE T L AA E DP+ GV EN+++GQ +GTG L +
Sbjct: 325 GIVGEKASVLARAAFEITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAM 382
>sp|Q976A6|RPOA2_SULTO DNA-directed RNA polymerase subunit A'' OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoA2
PE=3 SV=2
Length = 392
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 83/259 (32%), Positives = 135/259 (52%), Gaps = 26/259 (10%)
Query: 1418 IRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAV 1477
+ I N + DEE DK D ++ I +S + L IRI + DD + +
Sbjct: 155 VDITNMSITIQLDEEMLKDKGVDPSSVKKI----ISKLKLGKIRIEDIDDYTFTIYFEEI 210
Query: 1478 DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITESGEFKAIADWLL 1537
D + +R L + ++GI+ I +R I+ + G+ ++++
Sbjct: 211 DNISALFKMR----EKLLNTKIKGIKGI-------------RRAIVQKKGD-----EYVI 248
Query: 1538 ETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYVNYR 1597
TDG++L V+ + VD + +N+I EI GIEA R+++ +E+ VL+ GL V+ R
Sbjct: 249 ITDGSNLEGVIGIKGVDVNKIQTNNIHEIADTFGIEAAREAIAREIKKVLEEQGLDVDMR 308
Query: 1598 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADPMRGVSE 1657
H+ L+ D+MT G + I RHG+ + + L R +FE TV L+DAAA E + +GV E
Sbjct: 309 HILLVADIMTRTGVVRQIGRHGVTGEKSSVLARAAFEVTVKHLLDAAARGEMEEFKGVVE 368
Query: 1658 NIIMGQLPRMGTGCFDLLL 1676
NII+GQ R+GTG +L +
Sbjct: 369 NIIIGQPIRLGTGIVELTM 387
>sp|C3N7Q1|RPOA2_SULIY DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 98/158 (62%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR I+ + G+ ++++ TDG++L VLS + VD + +N+I EI +V GIEA R+
Sbjct: 235 KRAIVQKKGD-----EYIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREI 289
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E++ VL GL V+ RH+ L+ DVMT G + I RHG+ + L R +FE TV
Sbjct: 290 IIREISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVK 349
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAAA + + +GV ENII+G ++GTG +L +
Sbjct: 350 HLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTM 387
>sp|C3NFS2|RPOA2_SULIN DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 98/158 (62%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR I+ + G+ ++++ TDG++L VLS + VD + +N+I EI +V GIEA R+
Sbjct: 235 KRAIVQKKGD-----EYIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREI 289
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E++ VL GL V+ RH+ L+ DVMT G + I RHG+ + L R +FE TV
Sbjct: 290 IIREISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVK 349
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAAA + + +GV ENII+G ++GTG +L +
Sbjct: 350 HLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTM 387
>sp|C3MYA0|RPOA2_SULIM DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 98/158 (62%), Gaps = 5/158 (3%)
Query: 1519 KRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1578
KR I+ + G+ ++++ TDG++L VLS + VD + +N+I EI +V GIEA R+
Sbjct: 235 KRAIVQKKGD-----EYIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREI 289
Query: 1579 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1638
+ +E++ VL GL V+ RH+ L+ DVMT G + I RHG+ + L R +FE TV
Sbjct: 290 IIREISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVK 349
Query: 1639 VLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLL 1676
L+DAAA + + +GV ENII+G ++GTG +L +
Sbjct: 350 HLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTM 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,357,172
Number of Sequences: 539616
Number of extensions: 24119792
Number of successful extensions: 109350
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 104754
Number of HSP's gapped (non-prelim): 3439
length of query: 1764
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1632
effective length of database: 120,340,147
effective search space: 196395119904
effective search space used: 196395119904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)