RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6965
         (1764 letters)



>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1449

 Score =  241 bits (616), Expect = 7e-65
 Identities = 151/592 (25%), Positives = 267/592 (45%), Gaps = 44/592 (7%)

Query: 1108 LRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCI---EANMLSDMTLQ 1164
            L  I  +  +      + ++N+D +      ++  ++  D+ L+ +   E   L      
Sbjct: 882  LDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKF 941

Query: 1165 FIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDA 1224
               +    ++      +    +++      I+    SD+T++ I        K   E   
Sbjct: 942  LREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDI----VLGVKDLQENLL 997

Query: 1225 VDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANML 1284
            V + ++++    I+      +TL    + +   ++   +E  + K   D  L  IEA  L
Sbjct: 998  VLRGKNEI----IQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFL 1053

Query: 1285 SDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKM 1344
              +       M    +     E A     +      + +  ++    +   I+N   +  
Sbjct: 1054 RSVVHPGE--MVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMK 1111

Query: 1345 Q-------DEEDAVDKMEDDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKME 1397
                    +   A D+ +  +    IE   L  +T+      + D       ED  + ++
Sbjct: 1112 TPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDE-EIIQ 1170

Query: 1398 DDMFLRCIEANMLSDMTLQFIRIMNSDDSKMQDEEDAVDKMEDDMFLRCIEANMLSDMTL 1457
                L   EA    D    ++  +  D + M D++  + ++ +      I+    +D+  
Sbjct: 1171 LHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGER-----IKQTFKNDL-- 1223

Query: 1458 QFIRIMNSDDSKMQD---------EEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKV 1508
                I + D+ +              DA  + E+D  L+ IE  ML ++TL+G+E I +V
Sbjct: 1224 --FVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERV 1281

Query: 1509 YMHLPQTDSKKRIIITESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQ 1568
             M         R + + +GE+    +W+LETDG +L +V++   +DP R ++N   +I +
Sbjct: 1282 VMM-----KYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIME 1336

Query: 1569 VLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 1628
            VLGIEA R ++ KE+  V+   G YVNYRH+ALL DVMT +G L ++TRHG NR +TGAL
Sbjct: 1337 VLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGAL 1396

Query: 1629 MRCSFEETVDVLMDAAAHAEADPMRGVSENIIMGQLPRMGTGCFDLLLDAEK 1680
            MRCSFEETV++L +A A AE D  RGVSEN+I+GQ+  +GTG FD+++D E 
Sbjct: 1397 MRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEES 1448



 Score = 49.1 bits (116), Expect = 6e-06
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 1    MEAISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQDEEDAVDKMEDDMFLRC 60
            M  + E+I   F +DL  I+++DN EKL++R R++           DA  + E+D  L+ 
Sbjct: 1208 MGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVR------PKSLDAETEAEEDHMLKK 1261

Query: 61   IEANMLSDMTLQFIR-----IMNSDDSKMQDEEDAVDKMEDDMFL 100
            IE  ML ++TL+ +      +M   D K+        K  + +  
Sbjct: 1262 IENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLE 1306


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
            [TaxId: 274]}
          Length = 1504

 Score =  123 bits (310), Expect = 9e-29
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 24/146 (16%)

Query: 1532 IADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYG 1591
            + D  +E     +MK +   D    R     + E      +EA+ +              
Sbjct: 1362 LHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLE---KWDVEALNE-------------- 1404

Query: 1592 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEADP 1651
                 R +A     +  K  LM +T+  ++      L   SF+ T  VL +AA   + D 
Sbjct: 1405 -----RLIAEGKTPVAWKPLLMGVTKSALST--KSWLSAASFQNTTHVLTEAAIAGKKDE 1457

Query: 1652 MRGVSENIIMGQLPRMGTGCFDLLLD 1677
            + G+ EN+I+G+L   GTG   +   
Sbjct: 1458 LIGLKENVILGRLIPAGTGSDFVRFT 1483


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,099,670
Number of extensions: 293463
Number of successful extensions: 674
Number of sequences better than 10.0: 1
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 49
Length of query: 1764
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1666
Effective length of database: 1,062,056
Effective search space: 1769385296
Effective search space used: 1769385296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)