BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6966
(155 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 28/35 (80%)
Query: 121 YHLLVLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
Y + E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1352 YSNDICEIFAVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1336 ICEIFAVLGIEAVRKSVEKEMNTVLQFYGLY 1366
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1387
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1355 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1385
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1343 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1373
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1354 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1384
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|195566225|ref|XP_002106688.1| RNA polymerase II 215kD subunit [Drosophila simulans]
gi|194204073|gb|EDX17649.1| RNA polymerase II 215kD subunit [Drosophila simulans]
Length = 552
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 19 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 49
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1386
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1353 ICEIFQVLGIEAVRKSVEKEMNNVLQFYGLY 1383
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1347 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1377
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1338 ICEIFQVLGIEAVRKSVEKEMNNVLQFYGLY 1368
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
Length = 1429
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 896 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 926
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1276 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1306
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 27/35 (77%)
Query: 121 YHLLVLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
Y + E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1342 YSNDICEIFSVLGIEAVRKSVEKEMNQVLQFYGLY 1376
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1355 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1385
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1355 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1385
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1353 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1383
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN+VLQFYGLY
Sbjct: 1355 ICEIFSVLGIEAVRKSVEKEMNSVLQFYGLY 1385
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1347 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1377
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1365
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1365
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1386
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1347 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1377
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1355 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1385
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1355 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1385
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1365
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1386
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1386
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1365
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1387
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1351 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1381
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1355 ICEIFEVLGIEAVRKSVEKEMNAVLQFYGLY 1385
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1359 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1389
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1361 ICEIFSVLGIEAVRKSVEKEMNQVLQFYGLY 1391
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1363 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1393
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVL FYGLY
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNTVLNFYGLY 1387
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVL FYGLY
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNTVLNFYGLY 1387
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1336 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1366
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVR+SVEKEMN VLQFYGLY
Sbjct: 1335 ICEIFQVLGIEAVRRSVEKEMNAVLQFYGLY 1365
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1355 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1385
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
Length = 1341
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+EKEMN VLQFYGLY
Sbjct: 1274 ICEIFTVLGIEAVRKSIEKEMNAVLQFYGLY 1304
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1353 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1383
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFAVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|78183107|gb|ABB29549.1| putative RNA polymerase II 215 kD subunit [Drosophila simulans]
Length = 746
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 526
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1348 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1378
>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
Length = 1677
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1355 ICEIFAVLGIEAVRKSVEKEMNAVLQFYGLY 1385
>gi|78183105|gb|ABB29548.1| putative RNA polymerase II 215 kD subunit [Drosophila orena]
Length = 750
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 526
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVLQFYGLY
Sbjct: 1356 ICEIFQVLGIEAVRKSVEKEMNTVLQFYGLY 1386
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVL FYGLY
Sbjct: 1353 ICEIFAVLGIEAVRKSVEKEMNTVLNFYGLY 1383
>gi|78183103|gb|ABB29547.1| putative RNA polymerase II 215 kD subunit [Drosophila erecta]
Length = 760
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 526
>gi|78183109|gb|ABB29550.1| putative RNA polymerase II 215 kD subunit [Drosophila teissieri]
Length = 769
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 526
>gi|38232293|gb|AAR14982.1| RNA polymerase II largest subunit [Limnadia lenticularis]
Length = 137
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 25/30 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGL 154
+ E VLGIEAVRKSVEKEMN VLQFYGL
Sbjct: 108 ICEIFSVLGIEAVRKSVEKEMNMVLQFYGL 137
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVL FYGLY
Sbjct: 1335 ICEIFSVLGIEAVRKSVEKEMNTVLNFYGLY 1365
>gi|78183111|gb|ABB29551.1| putative RNA polymerase II 215 kD subunit [Drosophila yakuba]
Length = 766
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 496 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 526
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN+VLQFYGLY
Sbjct: 1355 ICEIFSVLGIEAVRKSVEKEMNSVLQFYGLY 1385
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1340 ICEIFSVLGIEAVRKSVEKEMNQVLQFYGLY 1370
>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
Length = 1705
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1387
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1335 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1365
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1359 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1389
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1352 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1382
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1386
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1355 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1385
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNQVLQFYGLY 1386
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMNTVL FYGLY
Sbjct: 1357 ICEIFSVLGIEAVRKSVEKEMNTVLNFYGLY 1387
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1359 ICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1389
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1352 ICEIFSVLGIEAVRKSVEKEMNNVLQFYGLY 1382
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1352 ICEIFSVLGIEAVRKSVEKEMNNVLQFYGLY 1382
>gi|38232239|gb|AAR14955.1| RNA polymerase II largest subunit [Semibalanus balanoides]
Length = 137
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 25/30 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGL 154
+ E VLGIEAVRK +EKE+NTVLQFYGL
Sbjct: 108 ICEIFSVLGIEAVRKCIEKEINTVLQFYGL 137
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VL FYGLY
Sbjct: 1335 ICEIFSVLGIEAVRKSVEKEMNMVLNFYGLY 1365
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VL FYGLY
Sbjct: 1336 ICEIFQVLGIEAVRKSVEKEMNAVLSFYGLY 1366
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VL FYGLY
Sbjct: 1355 ICEIFSVLGIEAVRKSVEKEMNMVLSFYGLY 1385
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VL FYGLY
Sbjct: 1333 ICEIFSVLGIEAVRKSVEKEMNAVLSFYGLY 1363
>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VL FYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNAVLSFYGLY 1386
>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
Length = 1699
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VL FYGLY
Sbjct: 1356 ICEIFSVLGIEAVRKSVEKEMNAVLSFYGLY 1386
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEM+ VL YGLY
Sbjct: 1335 ICEIFQVLGIEAVRKSVEKEMDAVLHSYGLY 1365
>gi|157841474|gb|ABV83203.1| RNA polymerase 2 [Oscheius tipulae]
Length = 446
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+EKEMN V+ F G Y
Sbjct: 392 ICEIFEVLGIEAVRKSIEKEMNNVISFDGSY 422
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 121 YHLLVLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
Y + E VLGIEAVRK+VEKEMN V+ F G Y
Sbjct: 1355 YSNDICEIFAVLGIEAVRKAVEKEMNHVISFDGSY 1389
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 121 YHLLVLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
Y + E VLGIEAVRK+VEKEMN V+ F G Y
Sbjct: 1358 YSNDICEIFAVLGIEAVRKAVEKEMNHVISFDGSY 1392
>gi|198424613|ref|XP_002122390.1| PREDICTED: similar to synaptojanin 1 [Ciona intestinalis]
Length = 1245
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 2 LPLHPLILPPSSPY---SCTSTPLILPRTTHLILNAHSPSGIRSYPSPPTPHPSSTSKGP 58
LP PL P S+P S T PL R + P+ ++ P PP P + P
Sbjct: 1113 LPTRPLTRPQSTPILKSSPTKEPLPPTRPQKKVPPPRPPAITKATP-PPKPEAPNVVSAP 1171
Query: 59 PHWTPYIRPDPSPFILPL 76
P P +P PS F PL
Sbjct: 1172 PQNPPITQPPPSSFTTPL 1189
>gi|157841400|gb|ABV83155.1| RNA polymerase 2 [Rhabditis brassicae]
Length = 205
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 146 ICEIFEVLGIEAVRKSIEREMNNVISFDGSY 176
>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
Length = 1457
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGL 154
+ E VLG+EA RK++EKEMN +LQFYGL
Sbjct: 1337 IREIFSVLGVEAARKALEKEMNNLLQFYGL 1366
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEA RKS+++E+N+VLQ+Y LY
Sbjct: 1316 ICEIMDVLGIEAARKSIKRELNSVLQYYDLY 1346
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVRK+VEKEMN V+ F G Y
Sbjct: 1341 IVEIFSVLGIEAVRKAVEKEMNHVISFDGSY 1371
>gi|157841420|gb|ABV83169.1| RNA polymerase 2 [Phasmarhabditis sp. EM434]
Length = 204
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 152 ICEIFEVLGIEAVRKSIEREMNNVISFDGSY 182
>gi|50346874|gb|AAT75144.1| RNA polymerase 2 [Oscheius myriophila]
Length = 70
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 17 ICEIFEVLGIEAVRKSIEREMNNVISFDGSY 47
>gi|157841417|gb|ABV83167.1| RNA polymerase 2 [Cruznema tripartitum]
Length = 335
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E +LGIEAVRKS+E+EMN V+ F G Y
Sbjct: 276 ICEIFEILGIEAVRKSIEREMNNVISFDGSY 306
>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
Length = 1459
Score = 42.7 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEA RKS+++E+N+VLQ+Y LY
Sbjct: 1334 ICEIMDVLGIEAARKSIKRELNSVLQYYDLY 1364
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
Length = 1853
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+EKEM+ V+ F G Y
Sbjct: 1355 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSY 1385
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 64 YIRPDPSPFILPLT-----GVSHPLDLHPSVLLLEGTTGSYGPEGTWIHD----PLYGLR 114
++R S + LT G+ + ++++ TGS+ E W+ + +
Sbjct: 1240 FLRKVESQLLSNLTLSGIPGIDKVFTRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVM 1299
Query: 115 GGVILDYHLLV----LETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
G +D+ V +ET VLGIEAVR ++ E+ TV+ F G Y
Sbjct: 1300 GHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 1344
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 42.4 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E +LGIEAVRKS+EKEMN V+ F G Y
Sbjct: 1273 IVEVFSILGIEAVRKSIEKEMNHVISFDGSY 1303
>gi|157841484|gb|ABV83208.1| RNA polymerase 2 [Choriorhabditis cristata]
Length = 378
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 319 ICEIFEVLGIEAVRKAIEREMNNVISFDGSY 349
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E +LGIEAVRK++EKEMN V+ F G Y
Sbjct: 1358 IVEIFQILGIEAVRKAIEKEMNHVISFDGSY 1388
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKE+N V+ F G Y
Sbjct: 1363 ICEIFQVLGIEAVRKSVEKELNHVISFDGSY 1393
>gi|161897753|gb|ABX80022.1| RNA polymerase 2 largest subunit [Cephaloboides cf. armata SB363]
Length = 89
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 24 ICEIFEVLGIEAVRKAIEREMNNVISFDGSY 54
>gi|157841368|gb|ABV83138.1| RNA polymerase 2 [Oscheius tipulae]
Length = 629
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+EKEMN V+ F G Y
Sbjct: 570 ICEIFEVLGIEAVRKSIEKEMNNVISFDGSY 600
>gi|157841364|gb|ABV83136.1| RNA polymerase 2 [Rhabditis sp. SB347]
Length = 621
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+EKEMN V+ F G Y
Sbjct: 569 ICEIFEVLGIEAVRKSIEKEMNNVISFDGSY 599
>gi|157841414|gb|ABV83165.1| RNA polymerase 2 [Choriorhabditis dudichi]
Length = 380
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 328 ICEIFEVLGIEAVRKAIEREMNNVISFDGSY 358
>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit, partial [Helobdella stagnalis]
Length = 1337
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 1270 IVEVFEVLGIEAVRKSIEREMNNVISFDGSY 1300
>gi|157841392|gb|ABV83150.1| RNA polymerase 2 [Brevibucca saprophaga]
Length = 386
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EM+ V+ F G Y
Sbjct: 319 ICEIFDVLGIEAVRKSIEREMDNVISFDGSY 349
>gi|157841476|gb|ABV83204.1| RNA polymerase 2 [Oscheius dolichura]
Length = 371
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EM+ V+ F G Y
Sbjct: 324 ICEIFEVLGIEAVRKSIEREMDNVISFDGSY 354
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform 3
[Strongylocentrotus purpuratus]
Length = 1921
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVE EMN V+ F G Y
Sbjct: 1362 ICEIFQVLGIEAVRKSVETEMNHVISFDGSY 1392
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVE EMN V+ F G Y
Sbjct: 1362 ICEIFQVLGIEAVRKSVETEMNHVISFDGSY 1392
>gi|449687727|ref|XP_002164354.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
1, partial [Hydra magnipapillata]
Length = 1595
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E +LGIEAVRKS+EKEM+ V+ F G Y
Sbjct: 918 ICEIFSILGIEAVRKSIEKEMDHVISFDGSY 948
>gi|157841478|gb|ABV83205.1| RNA polymerase 2 [Pellioditis sp. JU274]
Length = 526
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 467 ICEIFEVLGIEAVRKSIEREMNNVISFDGSY 497
>gi|157841468|gb|ABV83200.1| RNA polymerase 2 [Rhabditis brassicae]
Length = 628
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 562 ICEIFEVLGIEAVRKSIEREMNNVISFDGSY 592
>gi|157841466|gb|ABV83199.1| RNA polymerase 2 [Pellioditis typica]
Length = 633
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 565 ICEIFEVLGIEAVRKSIEREMNNVISFDGSY 595
>gi|157841394|gb|ABV83151.1| RNA polymerase 2 [Rhabditis sp. PS1130]
Length = 619
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 561 ICEIFEVLGIEAVRKSIEREMNNVISFDGSY 591
>gi|157841366|gb|ABV83137.1| RNA polymerase 2 [Rhabditis rainai]
Length = 618
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 561 ICEIFEVLGIEAVRKSIEREMNNVISFDGSY 591
>gi|50346876|gb|AAT75145.1| RNA polymerase 2 [Rhabditella axei]
Length = 621
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 569 ICEIFEVLGIEAVRKSIEREMNNVISFDGSY 599
>gi|157841462|gb|ABV83197.1| RNA polymerase 2 [Pellioditis sp. JU274]
Length = 26
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 131 VLGIEAVRKSVEKEMNTVLQFYGLY 155
VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 1 VLGIEAVRKSIEREMNNVISFDGSY 25
>gi|157841457|gb|ABV83193.1| RNA polymerase 2 [Pellioditis typica]
Length = 45
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 131 VLGIEAVRKSVEKEMNTVLQFYGLY 155
VLGIEAVRKS+E+EMN V+ F G Y
Sbjct: 1 VLGIEAVRKSIEREMNNVISFDGSY 25
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 1353 ICEIFEVLGIEAVRKAIEREMNHVISFDGSY 1383
>gi|402590450|gb|EJW84380.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 1251
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 734 ICEIFEVLGIEAVRKAIEREMNHVISFDGSY 764
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 1358 ICEIFEVLGIEAVRKAIEREMNHVISFDGSY 1388
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 1353 ICEIFEVLGIEAVRKAIEREMNHVISFDGSY 1383
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVRK+VEKEMN V+ F G Y
Sbjct: 1356 IIEVFSVLGIEAVRKAVEKEMNHVISFDGSY 1386
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 1426 ICEIFEVLGIEAVRKAIEREMNHVISFDGSY 1456
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVRK+VEKEMN V+ F G Y
Sbjct: 1357 IIEVFSVLGIEAVRKAVEKEMNHVISFDGSY 1387
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E +LGIEAVRKS+EKEMN V+ F G Y
Sbjct: 1355 IVEVFSILGIEAVRKSIEKEMNHVISFDGSY 1385
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 1357 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 1387
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 1355 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 1385
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 1354 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 1384
>gi|1916659|gb|AAB51210.1| large subunit RNA polymerase II, partial [Cruznema tripartitum]
Length = 633
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E +LGIEAVRKS+E+EMN V+ F G Y
Sbjct: 566 ICEIFEILGIEAVRKSIEREMNNVISFDGSY 596
>gi|157841472|gb|ABV83202.1| RNA polymerase 2 [Oscheius insectivora]
Length = 246
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EM+ V+ F G Y
Sbjct: 186 ICEIFEVLGIEAVRKSIEREMHNVISFDGSY 216
>gi|157841403|gb|ABV83157.1| RNA polymerase 2 [Oscheius insectivora]
Length = 83
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EM+ V+ F G Y
Sbjct: 24 ICEIFEVLGIEAVRKSIEREMHNVISFDGSY 54
>gi|356605958|gb|AET25010.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 9
KK-2011]
Length = 607
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+EKEM+ V+ F G Y
Sbjct: 550 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSY 580
>gi|356605950|gb|AET25006.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 5
KK-2011]
Length = 614
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+EKEM+ V+ F G Y
Sbjct: 564 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSY 594
>gi|157841422|gb|ABV83170.1| RNA polymerase 2 [Caenorhabditis sp. JU727]
Length = 620
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+EKEM+ V+ F G Y
Sbjct: 570 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSY 600
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEA RK++E+EMN V+ F G Y
Sbjct: 1374 ICEVFEVLGIEAARKAIEREMNHVISFDGSY 1404
>gi|157841406|gb|ABV83159.1| RNA polymerase 2 [Rhabditoides inermis]
Length = 104
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E +LGIEAVRKS+EKEM+ V+ F G Y
Sbjct: 63 ICEIFEILGIEAVRKSIEKEMHQVISFDGSY 93
>gi|157841480|gb|ABV83206.1| RNA polymerase 2 [Pellioditis mediterranea]
Length = 618
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 566 ICEIFEVLGIEAVRKAIEREMNNVISFDGSY 596
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVRK++EKE+N V+ F G Y
Sbjct: 1358 IVEIFQVLGIEAVRKALEKEINHVISFDGSY 1388
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK+VE+EM+ V+ F G Y
Sbjct: 1357 ICEIFSVLGIEAVRKAVEREMDHVISFDGSY 1387
>gi|1778038|gb|AAB40622.1| RNA polymerase II large subunit, partial [Zeldia punctata]
Length = 629
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 562 ICEIFEVLGIEAVRKAIEREMNQVISFDGSY 592
>gi|157841390|gb|ABV83149.1| RNA polymerase 2 [Acrobeloides maximus]
Length = 616
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 569 ICEIFEVLGIEAVRKAIEREMNQVISFDGSY 599
>gi|157841384|gb|ABV83146.1| RNA polymerase 2 [rhabditoid sp. PDL15]
Length = 587
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 555 ICEIFEVLGIEAVRKAIEREMNQVISFDGSY 585
>gi|157841388|gb|ABV83148.1| RNA polymerase 2 [Panagrellus redivivus]
Length = 636
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 570 ICEVFEVLGIEAVRKAIEREMNHVISFDGSY 600
>gi|157841429|gb|ABV83175.1| RNA polymerase 2 [Rhabditis blumi]
Length = 193
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EM V+ F G Y
Sbjct: 141 ICEIFEVLGIEAVRKSIEREMYNVISFDGSY 171
>gi|356605934|gb|AET24998.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 15
KK-2011]
Length = 614
Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EM+ V+ F G Y
Sbjct: 555 ICEIFEVLGIEAVRKSIEREMDNVISFDGSY 585
>gi|157841370|gb|ABV83139.1| RNA polymerase 2 [Oscheius dolichuroides]
Length = 629
Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+E+EM+ V+ F G Y
Sbjct: 572 ICEIFEVLGIEAVRKSIEREMDNVISFDGSY 602
>gi|157841494|gb|ABV83213.1| RNA polymerase 2 [Rhabditoides inermiformis]
Length = 597
Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 528 ICEIFEVLGIEAVRKAIEREMNHVISFDGSY 558
>gi|157841386|gb|ABV83147.1| RNA polymerase 2 [Poikilolaimus regenfussi]
Length = 620
Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EMN V+ F G Y
Sbjct: 562 ICEIFEVLGIEAVRKAIEREMNHVISFDGSY 592
>gi|157841496|gb|ABV83214.1| RNA polymerase 2 [Rhabditoides inermis]
Length = 630
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E +LGIEAVRKS+EKEM+ V+ F G Y
Sbjct: 561 ICEIFEILGIEAVRKSIEKEMHQVISFDGSY 591
>gi|356605938|gb|AET25000.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 13
KK-2011]
Length = 623
Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 564 ICEIFAVLGIEAVRKAIEREMDNVISFDGSY 594
>gi|316997013|dbj|BAJ52634.1| RNA polymerase II largest subunit [Ephydatia fluviatilis]
Length = 1146
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVRK+VEKE++ V+ F G Y
Sbjct: 865 IVEIFSVLGIEAVRKAVEKELHHVISFDGSY 895
>gi|390364778|ref|XP_001200118.2| PREDICTED: leucine-rich repeat and IQ domain-containing protein
1-like [Strongylocentrotus purpuratus]
Length = 1753
Score = 38.9 bits (89), Expect = 0.80, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 10 PPSSPYSCTSTPLILPRTTHLILNAHSPSGIRSYPSPPTPHPSSTSKGPPHWTPYIRPDP 69
PP P S +S PR T + S PSP P+P ST+K P RP
Sbjct: 1408 PPLPPTSNSSHARPNPRPT-----------LPSSPSPHKPYPPSTTKPSSPEKPQTRPLR 1456
Query: 70 SPFILPLTGVSHPLDLHPSVLLLEGTTGSYGPEG 103
+ G PL+LHP L G G PEG
Sbjct: 1457 QAW----RGADSPLNLHPQGQNLPG-GGVSPPEG 1485
>gi|161897750|gb|ABX80020.1| RNA polymerase 2 largest subunit [Diploscapter sp. JU359]
Length = 63
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++++EM+ V+ F G Y
Sbjct: 17 ICEIFQVLGIEAVRKAIQREMHNVISFDGSY 47
>gi|157841434|gb|ABV83178.1| RNA polymerase 2 [Bunonema reticulatum]
Length = 614
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 556 ICEIFAVLGIEAVRKAIEREMHQVISFDGSY 586
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK+VEKE+ V+ F G Y
Sbjct: 1317 ICEIFEVLGIEAVRKAVEKEIKHVISFDGSY 1347
>gi|157841432|gb|ABV83177.1| RNA polymerase 2 [Rhabditoides inermiformis]
Length = 68
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++ +EMN V+ F G Y
Sbjct: 17 ICEIFEVLGIEAVRKAIXREMNHVISFDGSY 47
>gi|356605936|gb|AET24999.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 6
KK-2011]
Length = 577
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 546 ICEILEVLGIEAVRKAIEREMDKVISFDGSY 576
>gi|356605956|gb|AET25009.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 7
KK-2011]
Length = 621
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 552 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 582
>gi|356605952|gb|AET25007.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 10
KK-2011]
Length = 599
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 550 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 580
>gi|356605948|gb|AET25005.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 16
KK-2011]
Length = 613
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 553 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 583
>gi|356605942|gb|AET25002.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 20
KK-2011]
Length = 505
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 440 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 470
>gi|356605932|gb|AET24997.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 14
KK-2011]
Length = 624
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 555 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 585
>gi|50346858|gb|AAT75140.1| RNA polymerase 2 [Caenorhabditis remanei]
Length = 611
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 553 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 583
>gi|50346868|gb|AAT75142.1| RNA polymerase 2 [Caenorhabditis brenneri]
Length = 596
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 545 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 575
>gi|50346879|gb|AAT75146.1| RNA polymerase 2 [Caenorhabditis japonica]
Length = 608
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 553 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 583
>gi|157841500|gb|ABV83216.1| RNA polymerase 2 [Pelodera pseudoteres]
Length = 366
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK +E+EM+ V+ F G Y
Sbjct: 316 ICEIFEVLGIEAVRKGIEREMHQVISFDGSY 346
>gi|78190645|gb|ABB29644.1| DNA-directed RNA polymerase II largest subunit [Suberites fuscus]
Length = 292
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVRK+VEKE++ V+ F G Y
Sbjct: 259 IVEIFSVLGIEAVRKAVEKELHHVISFDGSY 289
>gi|157841440|gb|ABV83182.1| RNA polymerase 2 [Rhabditoides regina]
Length = 426
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK +E+EM+ V+ F G Y
Sbjct: 362 ICEIFEVLGIEAVRKGIEREMHQVISFDGSY 392
>gi|161897744|gb|ABX80015.1| RNA polymerase 2 largest subunit [Diploscapter sp. JU359]
Length = 374
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++++EM+ V+ F G Y
Sbjct: 320 ICEIFEVLGIEAVRKAIQREMHNVISFDGSY 350
>gi|157841382|gb|ABV83145.1| RNA polymerase 2 [Distolabrellus veechi]
Length = 583
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 553 ICEIFEVLGIEAVRKAIEREMDQVISFDGSY 583
>gi|1916670|gb|AAB51213.1| large subunit RNA polymerase II, partial [unidentified nematode]
Length = 633
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 566 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 596
>gi|356605954|gb|AET25008.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 8
KK-2011]
Length = 604
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 550 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 580
>gi|356605946|gb|AET25004.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 17
KK-2011]
Length = 623
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 560 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 590
>gi|356605944|gb|AET25003.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 19
KK-2011]
Length = 610
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 551 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 581
>gi|356605940|gb|AET25001.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 12
KK-2010]
Length = 604
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 551 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 581
>gi|356605930|gb|AET24996.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 18
KK-2011]
Length = 598
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 548 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 578
>gi|50346881|gb|AAT75147.1| RNA polymerase 2 [Caenorhabditis plicata]
Length = 636
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 570 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 600
>gi|50346887|gb|AAT75150.1| RNA polymerase 2 [Caenorhabditis sp. DF5070]
Length = 606
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 552 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 582
>gi|50346885|gb|AAT75149.1| RNA polymerase 2 [Caenorhabditis drosophilae]
Length = 633
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 568 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 598
>gi|50346863|gb|AAT75141.1| RNA polymerase 2 [Caenorhabditis angaria]
Length = 601
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 553 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 583
>gi|48869087|gb|AAT47141.1| RNA polymerase 2 [Prodontorhabditis wirthi]
Length = 630
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 573 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 603
>gi|50346883|gb|AAT75148.1| RNA polymerase 2 [Caenorhabditis sp. SB341]
Length = 622
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 570 ICEIFEVLGIEAVRKAIEREMHNVISFDGSY 600
>gi|390348762|ref|XP_003727075.1| PREDICTED: uncharacterized protein LOC100893836 [Strongylocentrotus
purpuratus]
Length = 1224
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 9 LPPSSPYSCTSTPLILPRTTHLILN-AHSPSGIRSYPSPPTPHPSSTSKGPPHWTPYIRP 67
+PPS+ + +ST I T H+ + +H PS PS + +PSSTS PP T +I P
Sbjct: 718 IPPSTSHIPSSTSHIPSSTNHIPSSTSHIPSSTSHNPSSTSHNPSSTSHNPPS-TSHIPP 776
Query: 68 DPS 70
S
Sbjct: 777 STS 779
>gi|1916666|gb|AAB51212.1| large subunit RNA polymerase II, partial [Teratorhabditis palmarum]
Length = 631
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 564 ICEIFEVLGIEAVRKAIEREMHQVISFDGSY 594
>gi|1916663|gb|AAB51211.1| large subunit RNA polymerase II, partial [Mesorhabditis sp.]
Length = 633
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 566 ICEIFEVLGIEAVRKAIEREMHQVISFDGSY 596
>gi|157841488|gb|ABV83210.1| RNA polymerase 2 [Pelodera punctata]
Length = 605
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 547 ICEIFEVLGIEAVRKAIEREMHQVISFDGSY 577
>gi|157841380|gb|ABV83144.1| RNA polymerase 2 [Teratorhabditis palmarum]
Length = 633
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 568 ICEIFEVLGIEAVRKAIEREMHQVISFDGSY 598
>gi|157841378|gb|ABV83143.1| RNA polymerase 2 [Mesorhabditis longespiculosa]
Length = 623
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 571 ICEIFEVLGIEAVRKAIEREMHQVISFDGSY 601
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLG+EAVR+S+ KEM+ V YG+Y
Sbjct: 1385 IVEIMRVLGVEAVRQSLFKEMHAVYSLYGIY 1415
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+LE VLGIEAVR S+ E+ VL FYG+Y
Sbjct: 1349 ILEILNVLGIEAVRMSLINELRAVLNFYGIY 1379
>gi|1778036|gb|AAB40621.1| RNA polymerase II large subunit, partial [Aduncospiculum halicti]
Length = 631
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E +LGIEAVRK++E+EM+ V+ F G Y
Sbjct: 564 ICEIFEILGIEAVRKAIEREMHQVISFDGSY 594
>gi|157841498|gb|ABV83215.1| RNA polymerase 2 [Pristionchus pacificus]
Length = 583
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E +LGIEAVRK++E+EM+ V+ F G Y
Sbjct: 531 ICEIFEILGIEAVRKAIEREMHQVISFDGSY 561
>gi|157841492|gb|ABV83212.1| RNA polymerase 2 [Rhabditoides regina]
Length = 626
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK +E+EM+ V+ F G Y
Sbjct: 566 ICEIFEVLGIEAVRKGIEREMHQVISFDGSY 596
>gi|157841490|gb|ABV83211.1| RNA polymerase 2 [Pelodera teres]
Length = 629
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK +E+EM+ V+ F G Y
Sbjct: 566 ICEIFEVLGIEAVRKGIEREMHQVISFDGSY 596
>gi|157841486|gb|ABV83209.1| RNA polymerase 2 [Pelodera strongyloides dermatitica]
Length = 633
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK +E+EM+ V+ F G Y
Sbjct: 571 ICEIFEVLGIEAVRKGIEREMHQVISFDGSY 601
>gi|444721249|gb|ELW61993.1| Serine/threonine-protein kinase N3 [Tupaia chinensis]
Length = 1169
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 8 ILPPSSPYSCTSTPLILPRTTHLILNAHSPSGIRSYPSPPTPH---PSSTSKG----PPH 60
+LPP S S S P PRT P+ R PSP +P P TS G PP
Sbjct: 746 LLPPCSSPSTISPPKECPRT---------PTAPRGDPSPASPSHFLPKETSSGEEVKPPA 796
Query: 61 WTP--YIRPDPSPFILPLTGVSH 81
P Y+ +P+P PLT H
Sbjct: 797 KPPRLYLPQEPTPEETPLTKRPH 819
>gi|157841464|gb|ABV83198.1| RNA polymerase 2 [Protorhabditis sp. JB122]
Length = 595
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++++EM+ V+ F G Y
Sbjct: 529 ICEIFEVLGIEAVRKAIQREMHNVISFDGSY 559
>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
Length = 1713
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 1374 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 1404
>gi|222622030|gb|EEE56162.1| hypothetical protein OsJ_05065 [Oryza sativa Japonica Group]
Length = 2645
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 21/89 (23%)
Query: 12 SSPYSCTSTPLILPRTTHLILNAHSPSGIRSYPSPPTPH--------PSSTSKGPPHWTP 63
SSP+S STP+ +P T+ A P P+PH P +TS G H P
Sbjct: 2502 SSPFS--STPMPMPHGTYRAAGAQ--------PHAPSPHLQQLRMPSPYATSHGNQHQRP 2551
Query: 64 YIRPDPSPFILPLT---GVSHPLDLHPSV 89
I PF+LP + ++ PL L+ V
Sbjct: 2552 SILASLLPFVLPSSSNPSLTAPLSLNTVV 2580
>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E LG+EAVRKS+EKEM V+ F G Y
Sbjct: 1359 IVEIFSCLGVEAVRKSIEKEMFNVISFDGSY 1389
>gi|328785762|ref|XP_392332.4| PREDICTED: hypothetical protein LOC408801, partial [Apis mellifera]
Length = 2081
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 24/48 (50%)
Query: 10 PPSSPYSCTSTPLILPRTTHLILNAHSPSGIRSYPSPPTPHPSSTSKG 57
P +S +STP I T L + PS SY PPTPH STS G
Sbjct: 930 PANSDTPASSTPGISQPATPQSLISSQPSTPHSYSQPPTPHSHSTSSG 977
>gi|222110722|ref|YP_002552986.1| pepsy-associated tm helix domain-containing protein [Acidovorax
ebreus TPSY]
gi|221730166|gb|ACM32986.1| PepSY-associated TM helix domain protein [Acidovorax ebreus TPSY]
Length = 517
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 84 DLHPSVLLLEGTTG-----------SYGPEGTWIHDPLYGLRGGVILDYHLLVLETTIVL 132
D H +VL + GTTG + G W+H LY LRGG++ Y ++ +L
Sbjct: 174 DAHDTVLYISGTTGEVVRDATRTERQWNYAGAWLH-WLYPLRGGLVDRYWADIVNALSLL 232
Query: 133 GIEAV 137
GI AV
Sbjct: 233 GIAAV 237
>gi|121594673|ref|YP_986569.1| PepSY-associated TM helix domain-containing protein [Acidovorax sp.
JS42]
gi|120606753|gb|ABM42493.1| PepSY-associated TM helix domain protein [Acidovorax sp. JS42]
Length = 517
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 84 DLHPSVLLLEGTTG-----------SYGPEGTWIHDPLYGLRGGVILDYHLLVLETTIVL 132
D H +VL + GTTG + G W+H LY LRGG++ Y ++ +L
Sbjct: 174 DAHDTVLYISGTTGEVVRDATRTERQWNYAGAWLH-WLYPLRGGLVDRYWADIVNALSLL 232
Query: 133 GIEAV 137
GI AV
Sbjct: 233 GIAAV 237
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,959,731,099
Number of Sequences: 23463169
Number of extensions: 144779554
Number of successful extensions: 743515
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 946
Number of HSP's that attempted gapping in prelim test: 730319
Number of HSP's gapped (non-prelim): 12458
length of query: 155
length of database: 8,064,228,071
effective HSP length: 117
effective length of query: 38
effective length of database: 9,614,004,594
effective search space: 365332174572
effective search space used: 365332174572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)