BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6966
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
 pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
          Length = 1752

 Score = 29.6 bits (65), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 126  LETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
            +E   +LGIEA R ++ KE+  V++F G Y
Sbjct: 1339 VEILQILGIEATRSALLKELRNVIEFDGSY 1368


>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
           Reductase From Sinorhizobium Meliloti
 pdb|3U5T|B Chain B, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
           Reductase From Sinorhizobium Meliloti
 pdb|3U5T|C Chain C, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
           Reductase From Sinorhizobium Meliloti
 pdb|3U5T|D Chain D, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
           Reductase From Sinorhizobium Meliloti
          Length = 267

 Score = 26.9 bits (58), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 68  DPSPFILPLTGVSHPLDLHPSVLLLEGTTGSYGPEGTWIHDPLYGLRGGVI 118
           D    + PL  +  P D+  +V  L       GP+G W++  +    GG+I
Sbjct: 223 DRFAKLAPLERLGTPQDIAGAVAFL------AGPDGAWVNGQVLRANGGII 267


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.144    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,751,515
Number of Sequences: 62578
Number of extensions: 139946
Number of successful extensions: 238
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 2
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)