BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6966
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct: 1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRKS+EKEM+ V+ F G Y
Sbjct: 1355 ICEIFEVLGIEAVRKSIEKEMDNVISFDGSY 1385
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
+ E VLGIEAVRK++E+EM+ V+ F G Y
Sbjct: 1354 ICEIFEVLGIEAVRKAIEREMDNVISFDGSY 1384
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a
PE=1 SV=3
Length = 1970
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVRK++E+E+ V+ F G Y
Sbjct: 1362 IVEIFTVLGIEAVRKALERELYHVISFDGSY 1392
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A
PE=1 SV=2
Length = 1970
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVRK++E+E+ V+ F G Y
Sbjct: 1362 IVEIFTVLGIEAVRKALERELYHVISFDGSY 1392
>sp|A9KMP5|COBQ_CLOPH Cobyric acid synthase OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=cobQ PE=3 SV=1
Length = 513
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 91 LLEGTTGSYGPEGTWIHDPLYGLRGGVILDYHLLVLETTIVLGIEAVRKSVEKEMNTV 148
L+ G G Y G W+HDP YG+ GG + L +L V E VRK +N V
Sbjct: 328 LIFGICGGYQMLGEWLHDP-YGVEGGGEIK-GLSLLPINTVFAKEKVRKQNSGTLNKV 383
>sp|B0JU67|IF2_MICAN Translation initiation factor IF-2 OS=Microcystis aeruginosa
(strain NIES-843) GN=infB PE=3 SV=1
Length = 1010
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 3 PLHPLILPPSSPYSCTSTPLILPRTTHLILNAHSPSGIRSYP--SPPTPHPSSTSKGPPH 60
P+ PL+ PP + TP P ++ +HSPS ++ P +P P + T PP+
Sbjct: 118 PVKPLVAPPGRDEAAEKTP---PTAAEML--SHSPS-VKETPTETPLVPEAAPTLIAPPN 171
Query: 61 WTPYIRPDPSP 71
P + P P P
Sbjct: 172 -RPSLTPKPRP 181
>sp|P11260|TR22_MOUSE Putative transposase element L1Md-A101/L1Md-A102/L1Md-A2 OS=Mus
musculus PE=1 SV=2
Length = 357
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 35 HSPSGIRSYPSPPTPHPSSTSKGPPHWTPYIRPDPSPFILPLTGVSHPLDLHPSVLLLEG 94
HSPS RS P+PP+P G P+ T + PD F++ + D H S+ L+
Sbjct: 16 HSPSSERSTPTPPSP-------GHPNTTENLDPDLKTFLMMMIE-DIKKDFHKSLKDLQE 67
Query: 95 TTGS 98
+T
Sbjct: 68 STAK 71
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVR ++ KE+ V+ F G Y
Sbjct: 1350 IVEIIQVLGIEAVRNALLKELRAVISFDGSY 1380
>sp|Q91VW9|ZKSC3_MOUSE Zinc finger protein with KRAB and SCAN domains 3 OS=Mus musculus
GN=Zkscan3 PE=2 SV=1
Length = 553
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 5 HPLILPPSSPYSCTSTPLILPRTTHLILNAHSPSGIRSYPSPPTPHPSSTSKGPPHW 61
H I PY C P R++HL+ + + +G + + P P+ S S+ HW
Sbjct: 415 HHRIHTGEKPYQCNMCPKAFRRSSHLLRHQRTHTGDKDF-FVPEPYWESQSRVESHW 470
>sp|Q9KLK7|LUXQ_VIBCH Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=luxQ PE=1 SV=1
Length = 857
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 67 PDPSPFILPLTGVSHPLDLHPSVLLLEGTTGSYGPEGTWIHDPLYGLRGGVILDYHLLVL 126
PDP P V D H + + + YG + +W+ D L + I DY L+++
Sbjct: 720 PDPQPLFDKTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLM 779
Query: 127 ETTI--VLGIEAVR 138
+ + + G+E R
Sbjct: 780 DNQLPYLDGVETTR 793
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
++E VLGIEAVR+++ KE+ TV+ F Y
Sbjct: 1942 IVEIFEVLGIEAVRRALLKELRTVISFDSSY 1972
>sp|Q5P3B0|COBQ_AROAE Cobyric acid synthase OS=Aromatoleum aromaticum (strain EbN1)
GN=cobQ PE=3 SV=1
Length = 489
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 92 LEGTTGSYGPEGTWIHDPLYGLRGGV--ILDYHLLVLETTI 130
L G G + G W+HDPL GL GG I LL +ETT+
Sbjct: 328 LAGICGGFQMLGGWLHDPL-GLEGGAGSIAGLGLLDMETTL 367
>sp|P08466|NUC1_YEAST Mitochondrial nuclease OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUC1 PE=1 SV=1
Length = 329
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 28 THLILNAHSPSGIRSYPSPPTPHPSST 54
T+L+LN HSP+ I P PPT P+S
Sbjct: 20 TYLLLNKHSPTQIIETPYPPTQKPNSN 46
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,500,771
Number of Sequences: 539616
Number of extensions: 3273547
Number of successful extensions: 16989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 346
Number of HSP's that attempted gapping in prelim test: 15110
Number of HSP's gapped (non-prelim): 1800
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)