Query psy6966
Match_columns 155
No_of_seqs 121 out of 458
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 23:21:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_A DNA-directed RNA polyme 99.7 1.1E-18 3.7E-23 174.1 4.1 82 74-155 1277-1368(1752)
2 1twf_A B220, DNA-directed RNA 99.7 6.4E-18 2.2E-22 168.4 5.8 82 74-155 1271-1362(1733)
3 4ayb_C DNA-directed RNA polyme 99.4 1.3E-13 4.5E-18 117.4 5.6 63 88-155 237-307 (395)
4 2a6h_D DNA-directed RNA polyme 97.3 0.00017 5.7E-09 72.5 4.8 34 122-155 1329-1362(1524)
5 1hqm_D DNA-directed RNA polyme 96.7 0.00096 3.3E-08 66.0 3.8 33 122-154 1070-1102(1265)
6 3lu0_D DNA-directed RNA polyme 95.6 0.0033 1.1E-07 63.0 1.3 34 122-155 1214-1247(1407)
7 1esw_A Amylomaltase; (beta,alp 39.5 13 0.00045 33.3 2.1 19 1-20 46-64 (500)
8 1x1n_A 4-alpha-glucanotransfer 37.1 16 0.00053 33.0 2.2 20 1-20 67-89 (524)
9 2pa2_A 60S ribosomal protein L 31.3 27 0.00092 27.2 2.4 15 134-148 34-48 (151)
10 1ffk_F Ribosomal protein L10E; 30.3 27 0.00094 27.3 2.3 16 134-149 61-76 (157)
11 1tz7_A 4-alpha-glucanotransfer 29.7 21 0.00071 32.1 1.7 20 1-20 63-83 (505)
12 3ls0_A SLL1638 protein, PSBQ; 26.3 55 0.0019 25.0 3.3 33 117-150 13-48 (133)
13 1vq8_H 50S ribosomal protein L 25.7 38 0.0013 26.9 2.4 15 133-147 61-75 (171)
14 2zkr_h 60S ribosomal protein L 23.3 52 0.0018 27.0 2.9 17 133-149 64-80 (214)
15 2kjg_A Archaeal protein SSO690 23.1 36 0.0012 25.1 1.7 32 115-146 56-91 (99)
16 3k4t_A Virion-associated prote 22.9 53 0.0018 24.1 2.6 33 118-150 18-58 (95)
17 2ftc_I Mitochondrial ribosomal 20.8 32 0.0011 25.3 1.0 22 115-145 22-43 (118)
18 3zsu_A TLL2057 protein, cyanoq 20.4 55 0.0019 24.8 2.3 32 118-150 12-45 (130)
No 1
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.72 E-value=1.1e-18 Score=174.06 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=66.7
Q ss_pred Eeecccccc--cccCCcceEEEcCCCCcCCccceEEecccc--------ceeeeceeeccCHHHHHHHHhHHHHHHHHHH
Q psy6966 74 LPLTGVSHP--LDLHPSVLLLEGTTGSYGPEGTWIHDPLYG--------LRGGVILDYHLLVLETTIVLGIEAVRKSVEK 143 (155)
Q Consensus 74 LpL~g~~~i--~dl~~~~RavI~edg~~~~~~e~~LeTeGt--------~gVD~~RTySNDI~EI~~VLGIEAAR~aIIk 143 (155)
+.|+|+++| +.+.+.++.+++++|++....+|+|+|+|+ +|||.+||+||||+||++||||||||++|++
T Consensus 1277 ~~i~Gi~~I~rv~i~~~~~~~~~~~g~~~~~~~~~l~teG~nL~~v~~~~gVD~~rt~sNdI~ei~~vlGIEAAR~~Ii~ 1356 (1752)
T 3h0g_A 1277 ISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLK 1356 (1752)
T ss_dssp CCSSCCTTCCCCCEEEEEEEEECSSSCEEEEEEEEEECCSCCCSTTTSSSSCCTTTCCCSCHHHHHHHSCHHHHHHHHHH
T ss_pred eEEecCCCccEEEEecccceeecCCCcccccceEEEEecccCHHHHhCcCCCccccCeeCCHHHHHHHHhHHHHHHHHHH
Confidence 566677765 444444444444455444456899999998 8999999999999999999999999999999
Q ss_pred HHHHHhhhcCCC
Q psy6966 144 EMNTVLQFYGLY 155 (155)
Q Consensus 144 EI~~Vf~~yGsY 155 (155)
||++||++||+|
T Consensus 1357 Ei~~v~~~~G~~ 1368 (1752)
T 3h0g_A 1357 ELRNVIEFDGSY 1368 (1752)
T ss_dssp HHHTTSCSSSCC
T ss_pred HHHHHHHhcCCC
Confidence 999999999987
No 2
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=99.70 E-value=6.4e-18 Score=168.39 Aligned_cols=82 Identities=26% Similarity=0.259 Sum_probs=67.3
Q ss_pred Eeecccccc--cccCCcceEEEcCCCCcCCccceEEecccc--------ceeeeceeeccCHHHHHHHHhHHHHHHHHHH
Q psy6966 74 LPLTGVSHP--LDLHPSVLLLEGTTGSYGPEGTWIHDPLYG--------LRGGVILDYHLLVLETTIVLGIEAVRKSVEK 143 (155)
Q Consensus 74 LpL~g~~~i--~dl~~~~RavI~edg~~~~~~e~~LeTeGt--------~gVD~~RTySNDI~EI~~VLGIEAAR~aIIk 143 (155)
+.|.|+++| +.+...+|.+++++|.+...++|+|+|+|+ ++||.+||+||||+||++||||||||++|++
T Consensus 1271 ~~v~Gi~~I~r~~i~~~~~~~~~~~g~~~~~~~~~L~teG~nL~~vl~~~~VD~~rt~SNdI~eI~~vlGIEAAR~~Ii~ 1350 (1733)
T 1twf_A 1271 ITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYK 1350 (1733)
T ss_dssp CEEESCTTCCCEEEEEEEEEEECTTSSEEEEEEEEEEEESCCHHHHTTSTTBCTTTCBCSCHHHHHHHHCHHHHHHHHHH
T ss_pred eEEecCCCccEEEEecccceeecCCCccccCcceEEEeecccHHHHhccCCcccccceeccHHHHHHHhhHHHHHHHHHH
Confidence 566777765 344333455556666554456899999998 6799999999999999999999999999999
Q ss_pred HHHHHhhhcCCC
Q psy6966 144 EMNTVLQFYGLY 155 (155)
Q Consensus 144 EI~~Vf~~yGsY 155 (155)
||++||++||+|
T Consensus 1351 Ei~~V~~~~Gi~ 1362 (1733)
T 1twf_A 1351 EVYNVIASDGSY 1362 (1733)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHHhhcCcc
Confidence 999999999986
No 3
>4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C 4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C
Probab=99.41 E-value=1.3e-13 Score=117.39 Aligned_cols=63 Identities=22% Similarity=0.124 Sum_probs=55.9
Q ss_pred cceEEEcCCCCcCCccceEEecccc--------ceeeeceeeccCHHHHHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q psy6966 88 SVLLLEGTTGSYGPEGTWIHDPLYG--------LRGGVILDYHLLVLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155 (155)
Q Consensus 88 ~~RavI~edg~~~~~~e~~LeTeGt--------~gVD~~RTySNDI~EI~~VLGIEAAR~aIIkEI~~Vf~~yGsY 155 (155)
..|+++.+.+ .+|++.|+|. +++|.++++|||++||+++|||||||+.|++|+++||..||.+
T Consensus 237 i~r~~~~~~~-----~~~~~~t~g~~l~~~~~~~~vd~~~~~sn~i~eI~~vlGiEAar~~iv~Ei~~V~~~~Gv~ 307 (395)
T 4ayb_C 237 IKRAIVQKKG-----DEYIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLD 307 (395)
T ss_dssp CCEEEEEEET-----TEEEEEEESCCHHHHTTSTTCCTTTCEESCTTHHHHHHCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred eeEEEEeccC-----CEEEEEecCCCceeeeEeecccccccccCcchhhhhhhhHHHHHHHHHHhHHHHHhccCce
Confidence 4577765433 4799999997 7899999999999999999999999999999999999999975
No 4
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=97.30 E-value=0.00017 Score=72.53 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=32.1
Q ss_pred ccCHHHHHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q psy6966 122 HLLVLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155 (155)
Q Consensus 122 SNDI~EI~~VLGIEAAR~aIIkEI~~Vf~~yGsY 155 (155)
+||++||++++||||||+.|++||++|+..+|..
T Consensus 1329 ~~~~~dil~v~Giea~~~~iv~Eiq~Vyr~QGv~ 1362 (1524)
T 2a6h_D 1329 AIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVK 1362 (1524)
T ss_dssp BCCHHHHHHHHCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCchhheeecCHHHHHHHHHHHHHHHHHhcCcc
Confidence 4999999999999999999999999999999963
No 5
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D
Probab=96.67 E-value=0.00096 Score=66.03 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=31.7
Q ss_pred ccCHHHHHHHHhHHHHHHHHHHHHHHHhhhcCC
Q psy6966 122 HLLVLETTIVLGIEAVRKSVEKEMNTVLQFYGL 154 (155)
Q Consensus 122 SNDI~EI~~VLGIEAAR~aIIkEI~~Vf~~yGs 154 (155)
+||++||++++||||||+.|++||++|+..+|.
T Consensus 1070 ~~~~~eil~v~Giea~~~~lv~EIq~vyr~QGv 1102 (1265)
T 1hqm_D 1070 AIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGV 1102 (1265)
T ss_dssp BSHHHHHHHTTHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc
Confidence 599999999999999999999999999999996
No 6
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=95.56 E-value=0.0033 Score=63.03 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=31.9
Q ss_pred ccCHHHHHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q psy6966 122 HLLVLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155 (155)
Q Consensus 122 SNDI~EI~~VLGIEAAR~aIIkEI~~Vf~~yGsY 155 (155)
+.|.++|++++||||+|+.|++||++|+..+|.+
T Consensus 1214 ~~~p~dil~v~Giea~~~ylv~Evq~VYr~QGV~ 1247 (1407)
T 3lu0_D 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 (1407)
T ss_dssp CCCHHHHHHHSCHHHHHHHTTTTTHHHHHHHTCC
T ss_pred CCCHHHHHHhhCHHHHHHHHHHHHHHHHHhcCcc
Confidence 6789999999999999999999999999999963
No 7
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase FAMI acarbose, transferase; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*
Probab=39.48 E-value=13 Score=33.27 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=15.1
Q ss_pred CCCCcccccCCCCCCccccc
Q psy6966 1 MLPLHPLILPPSSPYSCTST 20 (155)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (155)
+|||||.- --.|||+|.|.
T Consensus 46 ilPL~pt~-~~~SPY~~~S~ 64 (500)
T 1esw_A 46 VLPLGPTG-YGDSPYQSFSA 64 (500)
T ss_dssp CCCCSCBC-TTCCTTSBSCS
T ss_pred EcCCCCCC-CCCCCcCcccc
Confidence 58999876 45679999886
No 8
>1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP: c.1.8.1
Probab=37.13 E-value=16 Score=33.05 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=15.3
Q ss_pred CCCCccccc---CCCCCCccccc
Q psy6966 1 MLPLHPLIL---PPSSPYSCTST 20 (155)
Q Consensus 1 ~~~~~~~~~---~~~~~~~~~~~ 20 (155)
+|||||.-. --.|||+|.|.
T Consensus 67 ilPL~~t~~~~p~~~SPY~~~S~ 89 (524)
T 1x1n_A 67 VLPLVPPGKRGNEDGSPYSGQDA 89 (524)
T ss_dssp CCCCSCBCCSSSCTTCTTSBSCS
T ss_pred ecCCCCCCCCCCCCCCCcCcccc
Confidence 589999863 33579999886
No 9
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=31.32 E-value=27 Score=27.20 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy6966 134 IEAVRKSVEKEMNTV 148 (155)
Q Consensus 134 IEAAR~aIIkEI~~V 148 (155)
|||||.++-+-++..
T Consensus 34 IEAaRia~~R~lkr~ 48 (151)
T 2pa2_A 34 LEAARICANKYMVKS 48 (151)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 699999999999865
No 10
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=30.33 E-value=27 Score=27.27 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHh
Q psy6966 134 IEAVRKSVEKEMNTVL 149 (155)
Q Consensus 134 IEAAR~aIIkEI~~Vf 149 (155)
|||||.++-+-|+.-.
T Consensus 61 IEAaRia~nR~lkr~~ 76 (157)
T 1ffk_F 61 LEAARNAANRFVQNSG 76 (157)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6999999999998653
No 11
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1
Probab=29.72 E-value=21 Score=32.14 Aligned_cols=20 Identities=50% Similarity=0.796 Sum_probs=14.1
Q ss_pred CCCCccccc-CCCCCCccccc
Q psy6966 1 MLPLHPLIL-PPSSPYSCTST 20 (155)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~ 20 (155)
+|||||.-- --.|||+|.|.
T Consensus 63 ilPL~pt~p~~~~SPY~~~S~ 83 (505)
T 1tz7_A 63 VLPLNPTSLEAGNSPYSSNSL 83 (505)
T ss_dssp CCCCSCCCGGGTTCTTSCSCS
T ss_pred EcCCCCCCCCCCCCCcCcccc
Confidence 589998731 22479999886
No 12
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=26.29 E-value=55 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=24.7
Q ss_pred eceeeccCHHHHHHHH--hHHHHHHHHHHH-HHHHhh
Q psy6966 117 VILDYHLLVLETTIVL--GIEAVRKSVEKE-MNTVLQ 150 (155)
Q Consensus 117 ~~RTySNDI~EI~~VL--GIEAAR~aIIkE-I~~Vf~ 150 (155)
.--|||++=+|..+.| +|++||+.+ .| +..-++
T Consensus 13 ~pptysp~~i~~Iq~y~~~i~~ar~Rl-~e~L~~lI~ 48 (133)
T 3ls0_A 13 IPTTYSPEKIAQLQVYVNPIAVARDGM-EKRLQGLIA 48 (133)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHH-HHTHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHh-HHHHHHHhh
Confidence 3468999999988876 999999999 66 665543
No 13
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=25.69 E-value=38 Score=26.86 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHH
Q psy6966 133 GIEAVRKSVEKEMNT 147 (155)
Q Consensus 133 GIEAAR~aIIkEI~~ 147 (155)
-|||||.++-+-++.
T Consensus 61 qIEAaRia~~R~lkk 75 (171)
T 1vq8_H 61 SLEASRLSANRHLIK 75 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHH
Confidence 369999999999986
No 14
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.28 E-value=52 Score=26.97 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHh
Q psy6966 133 GIEAVRKSVEKEMNTVL 149 (155)
Q Consensus 133 GIEAAR~aIIkEI~~Vf 149 (155)
-|||||.++-+-++...
T Consensus 64 qIEAARia~nR~lkr~~ 80 (214)
T 2zkr_h 64 ALEAARICANKYMVKSC 80 (214)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 36999999999998753
No 15
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=23.05 E-value=36 Score=25.10 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=20.0
Q ss_pred eeeceeeccCHHHHHHHH----hHHHHHHHHHHHHH
Q psy6966 115 GGVILDYHLLVLETTIVL----GIEAVRKSVEKEMN 146 (155)
Q Consensus 115 VD~~RTySNDI~EI~~VL----GIEAAR~aIIkEI~ 146 (155)
|-.+|-.-|-|.+|++-| |||-.++.|++-|+
T Consensus 56 V~knk~fy~li~~IlekYs~KiGiEnV~eLIlnt~~ 91 (99)
T 2kjg_A 56 IRKNKEFYDMIAEILQRYYKKIGIENVNQLILTTIK 91 (99)
T ss_dssp HHHTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHhCccccchhHHHHHHHHHh
Confidence 333333334444444443 99999999998775
No 16
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=22.88 E-value=53 Score=24.07 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=27.5
Q ss_pred ceeeccCHHHHHHHHh--------HHHHHHHHHHHHHHHhh
Q psy6966 118 ILDYHLLVLETTIVLG--------IEAVRKSVEKEMNTVLQ 150 (155)
Q Consensus 118 ~RTySNDI~EI~~VLG--------IEAAR~aIIkEI~~Vf~ 150 (155)
.|+.-|||-+|+.-+| .|+.-+.||++|.+.|.
T Consensus 18 ~~~~~~~i~aiL~~~gs~~p~~~~lEsiAAKIIkDisdkId 58 (95)
T 3k4t_A 18 QKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLIN 58 (95)
T ss_dssp HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 3556789999999885 89999999999988775
No 17
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=20.77 E-value=32 Score=25.27 Aligned_cols=22 Identities=18% Similarity=0.031 Sum_probs=16.3
Q ss_pred eeeceeeccCHHHHHHHHhHHHHHHHHHHHH
Q psy6966 115 GGVILDYHLLVLETTIVLGIEAVRKSVEKEM 145 (155)
Q Consensus 115 VD~~RTySNDI~EI~~VLGIEAAR~aIIkEI 145 (155)
.+..++.+|. |||||.+|-+-|
T Consensus 22 ~e~~~it~~q---------iEaaR~ai~r~l 43 (118)
T 2ftc_I 22 LGGGYLHWGH---------FEMMRLTINRSM 43 (118)
T ss_pred CcCCccCHHH---------HHHHHHHHHhee
Confidence 4444666665 599999999888
No 18
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=20.38 E-value=55 Score=24.82 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=26.8
Q ss_pred ceeeccCHHHHHHHH--hHHHHHHHHHHHHHHHhh
Q psy6966 118 ILDYHLLVLETTIVL--GIEAVRKSVEKEMNTVLQ 150 (155)
Q Consensus 118 ~RTySNDI~EI~~VL--GIEAAR~aIIkEI~~Vf~ 150 (155)
--|||++-+|..+.| +|++||+.+ .|+..-++
T Consensus 12 pptysp~~i~~iq~y~~~i~~~r~Rl-~eL~~lI~ 45 (130)
T 3zsu_A 12 PPTYSELQITRIQDYLRDIEKNAERF-ADLEVSVA 45 (130)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTH-HHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 458999999998888 999999998 77776554
Done!