BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy6966
MLPLHPLILPPSSPYSCTSTPLILPRTTHLILNAHSPSGIRSYPSPPTPHPSSTSKGPPH
WTPYIRPDPSPFILPLTGVSHPLDLHPSVLLLEGTTGSYGPEGTWIHDPLYGLRGGVILD
YHLLVLETTIVLGIEAVRKSVEKEMNTVLQFYGLY

High Scoring Gene Products

Symbol, full name Information P value
RpII215
RNA polymerase II 215kD subunit 		protein from Drosophila melanogaster 9.4e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy6966
        (155 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ...   119  9.4e-06   1


>FB|FBgn0003277 [details] [associations]
            symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
            "Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
            II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
            chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
            "mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
            "polytene chromosome" evidence=IDA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
            GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
            GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
            EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
            RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
            SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
            STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
            KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
            InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
            GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
            Uniprot:P04052
        Length = 1887

 Score = 119 (46.9 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 25/31 (80%), Positives = 26/31 (83%)

Query:   125 VLETTIVLGIEAVRKSVEKEMNTVLQFYGLY 155
             + E   VLGIEAVRKSVEKEMN VLQFYGLY
Sbjct:  1354 ICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.144   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      155       116   0.00091  102 3  11 22  0.49    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  516 (55 KB)
  Total size of DFA:  113 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.86u 0.10s 12.96t   Elapsed:  00:00:24
  Total cpu time:  12.86u 0.10s 12.96t   Elapsed:  00:00:24
  Start:  Thu Aug 15 14:15:45 2013   End:  Thu Aug 15 14:16:09 2013

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