RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6966
         (155 letters)



>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1449

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 85   LHPSVLLLEGTTGSYGPEGTWIHDPLYGLRGGVILDYHLLVLETTI--------VLGIEA 136
            +      +   TG Y  E  W+ +        V+    +               VLGIEA
Sbjct: 1283 MMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEA 1342

Query: 137  VRKSVEKEMNTVLQFYGLY 155
             R ++ KE+  V+   G Y
Sbjct: 1343 GRAALYKEVYNVIASDGSY 1361


>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus
          [TaxId: 63363]}
          Length = 485

 Score = 29.6 bits (66), Expect = 0.14
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 1  MLPLHPLILP-PSSPYSCTS 19
          +LPL+P  L   +SPYS  S
Sbjct: 43 VLPLNPTSLEAGNSPYSSNS 62


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
            [TaxId: 274]}
          Length = 1504

 Score = 27.8 bits (61), Expect = 0.73
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 120  DYHLLVLETTIVLGIEAVRKSVEKEMNTVLQFYG 153
            D  LL  +      +EA+ + +  E  T + +  
Sbjct: 1385 DSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKP 1418


>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
          tuberosum) [TaxId: 4113]}
          Length = 523

 Score = 26.2 bits (57), Expect = 2.2
 Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 3/22 (13%)

Query: 1  MLPLHPLILPP---SSPYSCTS 19
          +LPL P         SPYS   
Sbjct: 66 VLPLVPPGKRGNEDGSPYSGQD 87


>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain
          {Thermus thermophilus [TaxId: 274]}
          Length = 158

 Score = 24.1 bits (51), Expect = 7.8
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 65 IRPDPSPFILPLTGVSHP 82
           RP P   IL   G+  P
Sbjct: 5  YRPSPDALILVAVGLEKP 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 619,498
Number of extensions: 29020
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 16
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)