BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6968
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 60/63 (95%)
Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP 82
P+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+V+DG S+LLLIRDEG PP
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 83 ELQ 85
ELQ
Sbjct: 79 ELQ 81
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%)
Query: 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEG 79
R +P+LRLG++G SGKS+L+HRF+TG++ E E ++KKE+++DG +HL+LIR+E
Sbjct: 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 62
Query: 80 VPPE 83
P+
Sbjct: 63 GAPD 66
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%)
Query: 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEG 79
R +P+LRLG++G SGKS+L+HRF+TG++ E E ++KKE+++DG +HL+LIR+E
Sbjct: 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 62
Query: 80 VPPE 83
P+
Sbjct: 63 GAPD 66
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ + +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ + +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 58
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ + +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 2 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 58
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ + +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ + +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ +L ++GS+ GKSAL +F+ G F+++ P ++K+V +D +L I D
Sbjct: 5 EYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILD 59
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ +L ++GS GKSAL +F+ G F+ E P ++K+V +D +L I D
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILD 57
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals
A Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRD 77
+VGS GKSAL +FM F+++ P + ++K+VV+DG + I D
Sbjct: 23 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 72
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRD 77
+VGS GKSAL +FM F+++ P + ++K+VV+DG + I D
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 60
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRD 77
+VGS GKSAL +FM F+++ P + ++K+VV+DG + I D
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 58
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRD 77
+VGS GKSAL +FM F+++ P + ++K+VV+DG + I D
Sbjct: 19 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 68
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRD 77
+VGS GKSAL +FM F+++ P + ++K+VV+DG + I D
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 60
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ +L ++GS GKSAL +F+ G F+++ P ++K+V +D +L I D
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILD 57
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRD 77
+VGS GKSAL +FM F+++ P + ++K+VV+DG + I D
Sbjct: 12 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 61
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRD 77
+VGS GKSAL +FM F+++ P + ++K+VV+DG + I D
Sbjct: 8 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 57
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ +L ++GS GKSAL +F+ G F+++ P ++K+V +D +L I D
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILD 57
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound
State
Length = 196
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP 82
+++L I G GKSALV RF+T F+ E P + + H I DE V
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDP--------TLESTYRHQATIDDEVVSM 78
Query: 83 EL 84
E+
Sbjct: 79 EI 80
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIR 76
L D+ + +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I
Sbjct: 3 LGSDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDIL 62
Query: 77 D 77
D
Sbjct: 63 D 63
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAF--LQEESPEGGRFKKEVVIDGHSHLLLIRD 77
+ +L ++G A GKS+LV RF+ G F QE + + + V +D + I D
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWD 60
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 37 KSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE 83
KSAL + + F+ E P ++K+VVIDG + LL I D G E
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEE 63
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGV 80
+++ +VG+ A GKS+++ R+ G F ++ +KK + +D + + DE V
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKD-------YKKTIGVDFLERQIQVNDEDV 54
>pdb|3IC7|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Of Gntr Family From Bacteroides Thetaiotaomicron
pdb|3IC7|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Of Gntr Family From Bacteroides Thetaiotaomicron
Length = 126
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 6 NSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE 53
N++T S+E+ +++V + GI +ASG L+H FL+EE
Sbjct: 48 NANTVXRSYEYLQSQEVIYNKRGIGFFVASGAKXLIHSLRKEQFLKEE 95
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ + +L ++G A GKS+LV RF+ G F + +ES G F + V
Sbjct: 1 MGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 50
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 19 ARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRF-KKEVVIDGHSHLLLIR 76
A + +L ++G A GKS+LV RF+ G F + +ES G F + V +D + I
Sbjct: 3 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 77 D 77
D
Sbjct: 63 D 63
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRF-KKEVVIDG 68
L++ I+G GK++L+HR++ + Q+ ++ G F KEV +DG
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG 54
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
V ++L ++G A GKS++V RF++ F + + P G + V I+ H+ I D
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWD 58
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ +L ++G A GKS+LV RF+ G F + +ES G F + V
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 48
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ +L ++G A GKS+LV RF+ G F + +ES G F + V
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVC 46
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ + +L ++G A GKS+LV RF+ G F + +ES G F + V
Sbjct: 1 MGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 50
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ +L ++G A GKS+LV RF+ G F + +ES G F + V
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 49
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ +L ++G A GKS+LV RF+ G F + +ES G F + V
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVC 48
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE 83
GKSAL + + F+ E P ++K+VVIDG + LL I D E
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEE 63
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE 83
GKSAL + + F+ E P ++K+VVIDG + LL I D E
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEE 63
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
Length = 187
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
++ L I+G +GKSAL +F+T F+ E P
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDP 52
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPEL 84
++ +VG GK+ L+ RF GAFL G F V ID + +L + +GV +L
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFL------AGTFISTVGIDFRNKVLDV--DGVKVKL 62
Query: 85 QPPNPS 90
Q + +
Sbjct: 63 QMWDTA 68
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58
+L +VG + GK+ +V RF TGAF + + G
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG 63
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSHLLLIRDEGVPP 82
+ +L ++G + +GKS+LV RF+ F++ +ES G F S L + D V
Sbjct: 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--------FSQTLAVNDATVKF 63
Query: 83 EL 84
E+
Sbjct: 64 EI 65
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVV-IDGHSHLLLIRD 77
++GS +GKS L+H+F+ F Q+ + G F VV + G + L I D
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWD 80
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILD 57
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDGHSHLLLIRDEGVPP 82
L++ I+G GKS+L+ RF F E + G FK K + +DG+ L I D
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 83 ELQPPNPS 90
+ PS
Sbjct: 76 RFRTLTPS 83
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILD 57
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With
Gdp
Length = 190
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 33 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 75
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus
Des C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate
Conformation Of H-Ras P21 At 1.35 Angstroms Resolution:
Implications For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In
Calcium A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution:
One Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs
Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs
Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs
Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHS-HLLLIRDEG 79
++ I+G + GKS+L +F+ G F+ P F K + ++G HL L+ G
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAG 61
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gdp (2)
Length = 166
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1RVD|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
D R+ + G+ GKS+LV RF+ G F + P
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP 34
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 21 DVPDLRLGIVGSLASGKSALVHRFMTGAF 49
+VP +L +VG +GK+ V R +TG F
Sbjct: 9 EVPTFKLVLVGDGGTGKTTFVKRHLTGEF 37
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant
In Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ + +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 20 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 62
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 20 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 62
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 21 DVPDLRLGIVGSLASGKSALVHRFMTGAF 49
+VP +L +VG +GK+ V R +TG F
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEF 29
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 20 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 62
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 21 DVPDLRLGIVGSLASGKSALVHRFMTGAF 49
+VP +L +VG +GK+ V R +TG F
Sbjct: 2 EVPTFKLVLVGDGGTGKTTFVKRHLTGEF 30
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound
Form
Length = 166
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHS-HLLLIRDEG 79
++ I+G + GKS+L +F+ G F+ P F K + ++G HL L+ G
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 63
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ + +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By
The Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An
Oncogenic Mutant Complexed With Gsp
Length = 171
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An
Oncogenic Mutant Complexed With Gsp
Length = 171
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHS-HLLLIRDEG 79
++ I+G + GKS+L +F+ G F+ P F K + ++G HL L+ G
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 63
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 16 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 58
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 16 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 58
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gdp
Length = 166
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 37 KSALVHRFMTGAFLQEESPEGGRF-KKEVVIDGHSHLLLIRD 77
KSAL +F+TG F+++ P F +KE+ +D +L I D
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILD 57
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ + +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 75
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To
Gdp
Length = 169
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHS-HLLLIRDEG 79
++ I+G + GKS+L +F+ G F+ P F K + ++G HL L+ G
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 58
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHS-HLLLIRD 77
+ +L++ ++G GKS++V RF+ F SP G F + V G+ H LI D
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ +L ++G GKS+LV RF+ G F + +ES G F + V
Sbjct: 4 ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 49
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILD 57
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With
Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With
Hras
Length = 173
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 22 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 64
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ +L ++G GKS+LV RF+ G F + +ES G F + V
Sbjct: 4 ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 49
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
Length = 166
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 37 KSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
K+AL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ +L ++G GKS+LV RF+ G F + +ES G F + V
Sbjct: 4 ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 49
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ +L ++G GKS+LV RF+ G F + +ES G F + V
Sbjct: 4 ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 49
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+++ P ++K+VVIDG + LL I D
Sbjct: 15 GKSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed
With The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed
With The Ras-interacting Domain Of Ralgds
Length = 167
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 37 KSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
KSAL + + F+ + P ++K+VVIDG + LL I D
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILD 57
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVI 66
+ +L ++G GKS+LV RF+ G F + +ES G F + V
Sbjct: 4 ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 49
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 36 GKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
GKSAL + + F+ E P ++K+VVIDG LL I D
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILD 57
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 15/46 (32%)
Query: 27 LGIVGSLASGKSA---LVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+GIVG SGKS L+ RF PE G +V+IDGH
Sbjct: 34 IGIVGRAGSGKSTLTKLIQRFYI--------PENG----QVLIDGH 67
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRF-KKEVVIDGHSHLLLIRD 77
+L++ ++G GKS++V RF+ +F +P G F K V H LI D
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 60
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
Length = 241
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 15/46 (32%)
Query: 27 LGIVGSLASGKSA---LVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+GIVG SGKS L+ RF PE G +V+IDGH
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFYI--------PENG----QVLIDGH 65
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 15/46 (32%)
Query: 27 LGIVGSLASGKSA---LVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+GIVG SGKS L+ RF PE G +V+IDGH
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYI--------PENG----QVLIDGH 71
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 15/46 (32%)
Query: 27 LGIVGSLASGKSA---LVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+GIVG SGKS L+ RF PE G +V+IDGH
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYI--------PENG----QVLIDGH 71
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 15/46 (32%)
Query: 27 LGIVGSLASGKSA---LVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+GIVG SGKS L+ RF PE G +V+IDGH
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFYI--------PENG----QVLIDGH 65
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 15/46 (32%)
Query: 27 LGIVGSLASGKSA---LVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+GIVG SGKS L+ RF PE G +V+IDGH
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYI--------PENG----QVLIDGH 71
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 15/46 (32%)
Query: 27 LGIVGSLASGKSA---LVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+GIVG SGKS L+ RF PE G +V+IDGH
Sbjct: 34 IGIVGRSGSGKSTLTKLIQRFYI--------PENG----QVLIDGH 67
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 30 VGSLASGKSALVHRFMTGAFLQEESPEG--GRFKKEVVIDGHSHLLLIRDEGV 80
V LA + VH + G F SPE GR +ID S L++ DEGV
Sbjct: 147 VAMLACARIGAVHSVIFGGF----SPEAVAGR-----IIDSSSRLVITADEGV 190
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 30 VGSLASGKSALVHRFMTGAFLQEESPEG--GRFKKEVVIDGHSHLLLIRDEGV 80
V LA + VH + G F SPE GR +ID S L++ DEGV
Sbjct: 147 VAMLACARIGAVHSVIFGGF----SPEAVAGR-----IIDSSSRLVITADEGV 190
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 30 VGSLASGKSALVHRFMTGAFLQEESPEG--GRFKKEVVIDGHSHLLLIRDEGV 80
V LA + VH + G F SPE GR +ID S L++ DEGV
Sbjct: 147 VAMLACARIGAVHSVIFGGF----SPEAVAGR-----IIDSSSRLVITADEGV 190
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 30 VGSLASGKSALVHRFMTGAFLQEESPEG--GRFKKEVVIDGHSHLLLIRDEGV 80
V LA + VH + G F SPE GR +ID S L++ DEGV
Sbjct: 147 VAMLACARIGAVHSVIFGGF----SPEAVAGR-----IIDSSSRLVITADEGV 190
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 30 VGSLASGKSALVHRFMTGAFLQEESPEG--GRFKKEVVIDGHSHLLLIRDEGV 80
V LA + VH + G F SPE GR +ID S L++ DEGV
Sbjct: 147 VAMLACARIGAVHSVIFGGF----SPEAVAGR-----IIDSSSRLVITADEGV 190
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 30 VGSLASGKSALVHRFMTGAFLQEESPEG--GRFKKEVVIDGHSHLLLIRDEGV 80
V LA + VH + G F SPE GR +ID S L++ DEGV
Sbjct: 147 VAMLACARIGAVHSVIFGGF----SPEAVAGR-----IIDSSSRLVITADEGV 190
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 13/69 (18%)
Query: 2 KMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK 61
K + + + + F+++ P R+G++G SGKS L+ AFL+ + EG
Sbjct: 28 KYTEGGNAILENISFSIS---PGQRVGLLGRTGSGKSTLL-----SAFLRLLNTEG---- 75
Query: 62 KEVVIDGHS 70
E+ IDG S
Sbjct: 76 -EIQIDGVS 83
>pdb|1XTO|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein
(Pqqb) From Pseudomonas Putida, Northeast Structural
Genomics Target Ppr6
Length = 311
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG---RFKKEVVIDGHSHLLL 74
LA++ P L ++ + L+H T L E SPE R EV DG S LL
Sbjct: 245 LAQNGPGGXLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVEVAFDGXSIELL 304
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus
Complexed With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation
Factor 2 Reveals A Nucleotide State Between The Gtp And
The Gdp States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation
Factor 2 Reveals A Nucleotide State Between The Gtp And
The Gdp States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR 59
P++ +G+VG + GK+ LV +TG + + S E R
Sbjct: 7 PEVNIGVVGHVDHGKTTLVQA-ITGIWTSKHSEELKR 42
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2
From S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2
From S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2
From S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2
From S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2
From S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2
From S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2
From S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2
From S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR 59
P++ +G+VG + GK+ LV +TG + + S E R
Sbjct: 8 PEVNIGVVGHVDHGKTTLVQA-ITGIWTSKHSEELKR 43
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 29 IVGSLASGKSALVHRFMTGAF 49
++G+ +GKS L+H+F+ F
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKF 35
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 29 IVGSLASGKSALVHRFMTGAF 49
++G+ +GKS L+H+F+ F
Sbjct: 16 VIGNAGTGKSCLLHQFIEKKF 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,981,232
Number of Sequences: 62578
Number of extensions: 111678
Number of successful extensions: 513
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 126
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)