Query psy6968
Match_columns 93
No_of_seqs 123 out of 1815
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:23:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 99.9 7.6E-23 1.6E-27 130.9 5.8 69 23-91 8-78 (205)
2 KOG0094|consensus 99.9 4.7E-22 1E-26 127.3 6.6 70 23-92 21-92 (221)
3 KOG0092|consensus 99.9 1.4E-21 3E-26 124.7 7.8 70 23-92 4-75 (200)
4 KOG0080|consensus 99.8 6.7E-21 1.4E-25 119.3 7.1 69 24-92 11-81 (209)
5 KOG0394|consensus 99.8 8.9E-21 1.9E-25 120.6 5.3 68 23-90 8-77 (210)
6 KOG0098|consensus 99.8 1.8E-20 3.9E-25 119.4 5.0 70 23-92 5-76 (216)
7 KOG0095|consensus 99.8 3E-20 6.5E-25 115.4 3.6 67 25-91 8-76 (213)
8 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 2.8E-19 6.1E-24 114.3 8.0 69 23-91 4-73 (182)
9 cd01875 RhoG RhoG subfamily. 99.8 3.6E-19 7.9E-24 114.2 8.1 68 24-91 3-71 (191)
10 KOG0078|consensus 99.8 7.7E-20 1.7E-24 118.0 4.4 69 24-92 12-82 (207)
11 cd04133 Rop_like Rop subfamily 99.8 1.1E-18 2.3E-23 111.2 9.3 66 25-90 2-68 (176)
12 KOG0393|consensus 99.8 6.7E-20 1.5E-24 118.2 3.6 69 24-92 4-74 (198)
13 cd04131 Rnd Rnd subfamily. Th 99.8 1.1E-18 2.5E-23 111.0 8.5 67 25-91 2-69 (178)
14 KOG0087|consensus 99.8 7.4E-19 1.6E-23 113.6 6.2 68 24-91 14-83 (222)
15 cd01874 Cdc42 Cdc42 subfamily. 99.8 4.3E-18 9.4E-23 107.9 8.9 66 25-90 2-68 (175)
16 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.9E-18 4.1E-23 113.7 7.1 67 25-91 2-69 (222)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.1E-18 4.6E-23 114.1 7.2 68 23-90 12-80 (232)
18 KOG0086|consensus 99.7 6.6E-19 1.4E-23 109.8 2.5 67 25-91 10-78 (214)
19 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.1E-17 2.3E-22 106.9 7.6 66 25-90 1-68 (182)
20 cd04120 Rab12 Rab12 subfamily. 99.7 9.7E-18 2.1E-22 108.9 6.5 64 26-89 2-67 (202)
21 cd01871 Rac1_like Rac1-like su 99.7 3.6E-17 7.8E-22 103.6 8.6 66 25-90 2-68 (174)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2.4E-17 5.2E-22 104.1 7.2 66 25-90 3-69 (172)
23 KOG0079|consensus 99.7 1.2E-18 2.6E-23 108.0 1.0 64 25-88 9-74 (198)
24 cd04136 Rap_like Rap-like subf 99.7 2.9E-17 6.3E-22 101.6 7.3 65 25-89 2-67 (163)
25 cd04134 Rho3 Rho3 subfamily. 99.7 8.9E-17 1.9E-21 102.8 8.9 65 26-90 2-67 (189)
26 cd04103 Centaurin_gamma Centau 99.7 7.6E-17 1.7E-21 100.8 8.0 62 25-86 1-62 (158)
27 PTZ00369 Ras-like protein; Pro 99.7 6.4E-17 1.4E-21 103.4 7.7 67 23-89 4-71 (189)
28 cd04176 Rap2 Rap2 subgroup. T 99.7 1.2E-16 2.6E-21 99.2 8.6 66 25-90 2-68 (163)
29 cd04175 Rap1 Rap1 subgroup. T 99.7 8E-17 1.7E-21 100.2 7.7 66 24-89 1-67 (164)
30 cd04121 Rab40 Rab40 subfamily. 99.7 5.3E-17 1.1E-21 104.5 6.6 66 24-89 6-73 (189)
31 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.3E-16 2.8E-21 98.2 7.7 65 25-89 2-67 (162)
32 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 5.8E-17 1.3E-21 102.2 6.0 64 26-89 2-67 (170)
33 cd04130 Wrch_1 Wrch-1 subfamil 99.7 4.1E-16 8.9E-21 98.1 9.1 66 25-90 1-67 (173)
34 PLN03071 GTP-binding nuclear p 99.7 4E-16 8.6E-21 102.2 8.4 69 22-90 11-81 (219)
35 cd01892 Miro2 Miro2 subfamily. 99.7 6.5E-16 1.4E-20 97.3 8.9 67 24-90 4-73 (169)
36 cd01870 RhoA_like RhoA-like su 99.7 6.9E-16 1.5E-20 96.7 8.8 66 25-90 2-68 (175)
37 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 2.8E-16 6.2E-21 101.2 6.8 65 25-89 1-68 (201)
38 cd04122 Rab14 Rab14 subfamily. 99.7 2.7E-16 5.8E-21 98.2 6.1 64 25-88 3-68 (166)
39 cd04117 Rab15 Rab15 subfamily. 99.7 3.8E-16 8.3E-21 97.4 6.7 64 25-88 1-66 (161)
40 cd04124 RabL2 RabL2 subfamily. 99.7 5.9E-16 1.3E-20 96.5 7.4 65 25-89 1-67 (161)
41 smart00174 RHO Rho (Ras homolo 99.7 8.9E-16 1.9E-20 96.2 8.2 64 27-90 1-65 (174)
42 cd04102 RabL3 RabL3 (Rab-like3 99.7 2.1E-16 4.5E-21 102.8 5.5 65 25-89 1-72 (202)
43 cd04143 Rhes_like Rhes_like su 99.6 4.6E-16 9.9E-21 103.8 6.8 65 25-89 1-66 (247)
44 KOG0097|consensus 99.6 7.9E-17 1.7E-21 99.6 2.7 68 24-91 11-80 (215)
45 cd04144 Ras2 Ras2 subfamily. 99.6 7.4E-16 1.6E-20 98.5 7.3 64 26-89 1-65 (190)
46 PLN00023 GTP-binding protein; 99.6 6.7E-16 1.5E-20 106.3 7.5 69 23-91 20-103 (334)
47 cd04177 RSR1 RSR1 subgroup. R 99.6 1.8E-15 3.9E-20 94.7 8.6 66 25-90 2-68 (168)
48 cd04135 Tc10 TC10 subfamily. 99.6 2.6E-15 5.7E-20 94.0 9.3 66 25-90 1-67 (174)
49 cd04119 RJL RJL (RabJ-Like) su 99.6 6.2E-16 1.3E-20 95.7 6.3 64 25-88 1-66 (168)
50 cd04140 ARHI_like ARHI subfami 99.6 1.7E-15 3.7E-20 94.5 8.3 64 25-88 2-66 (165)
51 smart00173 RAS Ras subfamily o 99.6 1.4E-15 3.1E-20 94.3 7.7 65 25-89 1-66 (164)
52 cd04132 Rho4_like Rho4-like su 99.6 7.6E-16 1.7E-20 97.7 6.5 65 25-89 1-67 (187)
53 cd04118 Rab24 Rab24 subfamily. 99.6 1.8E-15 3.9E-20 96.5 8.2 65 25-89 1-68 (193)
54 cd04145 M_R_Ras_like M-Ras/R-R 99.6 3E-15 6.4E-20 92.7 8.3 65 24-88 2-67 (164)
55 KOG0091|consensus 99.6 5.6E-17 1.2E-21 102.0 0.3 70 23-92 7-79 (213)
56 cd04116 Rab9 Rab9 subfamily. 99.6 1.4E-15 3E-20 95.1 6.6 66 24-89 5-72 (170)
57 cd01865 Rab3 Rab3 subfamily. 99.6 1.4E-15 3.1E-20 94.9 6.3 64 25-88 2-67 (165)
58 cd00877 Ran Ran (Ras-related n 99.6 4E-15 8.7E-20 93.3 8.3 65 25-89 1-67 (166)
59 PF00071 Ras: Ras family; Int 99.6 3.8E-15 8.2E-20 92.3 7.7 62 26-87 1-64 (162)
60 PTZ00132 GTP-binding nuclear p 99.6 6.2E-15 1.3E-19 95.8 8.9 69 21-89 6-76 (215)
61 cd01867 Rab8_Rab10_Rab13_like 99.6 3.2E-15 7E-20 93.4 7.3 65 24-88 3-69 (167)
62 cd04110 Rab35 Rab35 subfamily. 99.6 4.3E-15 9.4E-20 95.7 8.0 65 24-88 6-72 (199)
63 cd04125 RabA_like RabA-like su 99.6 2.7E-15 5.8E-20 95.6 6.5 64 25-88 1-66 (188)
64 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 5.7E-15 1.2E-19 92.0 7.6 64 25-88 3-68 (166)
65 KOG0088|consensus 99.6 4.4E-16 9.6E-21 97.6 2.5 71 22-92 11-83 (218)
66 KOG0395|consensus 99.6 1.7E-15 3.7E-20 98.1 5.0 66 24-89 3-69 (196)
67 PLN03110 Rab GTPase; Provision 99.6 5.7E-15 1.2E-19 96.5 7.2 65 24-88 12-78 (216)
68 COG1100 GTPase SAR1 and relate 99.6 1.9E-15 4E-20 97.9 4.6 67 25-91 6-74 (219)
69 cd01864 Rab19 Rab19 subfamily. 99.6 5.7E-15 1.2E-19 92.0 6.6 65 24-88 3-69 (165)
70 cd04106 Rab23_lke Rab23-like s 99.6 5.5E-15 1.2E-19 91.4 6.3 64 25-88 1-68 (162)
71 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.4E-14 2.9E-19 90.9 7.8 61 25-85 3-65 (170)
72 cd04127 Rab27A Rab27a subfamil 99.6 6.1E-15 1.3E-19 92.9 6.2 65 24-88 4-80 (180)
73 KOG0093|consensus 99.6 3.1E-15 6.7E-20 92.8 4.6 66 25-90 22-89 (193)
74 cd04109 Rab28 Rab28 subfamily. 99.6 5.8E-15 1.3E-19 96.2 5.9 65 25-89 1-68 (215)
75 cd04111 Rab39 Rab39 subfamily. 99.6 9.1E-15 2E-19 95.3 6.5 65 24-88 2-69 (211)
76 cd01860 Rab5_related Rab5-rela 99.6 1.5E-14 3.3E-19 89.5 7.1 64 25-88 2-67 (163)
77 smart00176 RAN Ran (Ras-relate 99.6 6.7E-15 1.5E-19 95.5 5.6 61 30-90 1-63 (200)
78 PLN03108 Rab family protein; P 99.6 1.6E-14 3.4E-19 94.0 7.1 65 24-88 6-72 (210)
79 cd04113 Rab4 Rab4 subfamily. 99.6 1.5E-14 3.3E-19 89.5 6.6 64 25-88 1-66 (161)
80 cd04146 RERG_RasL11_like RERG/ 99.6 2.9E-14 6.3E-19 88.8 7.9 59 26-84 1-60 (165)
81 cd01868 Rab11_like Rab11-like. 99.5 1.7E-14 3.6E-19 89.7 6.7 66 24-89 3-70 (165)
82 cd00157 Rho Rho (Ras homology) 99.5 6E-14 1.3E-18 87.3 9.1 65 25-89 1-66 (171)
83 cd04142 RRP22 RRP22 subfamily. 99.5 4.2E-14 9.1E-19 91.4 8.5 61 25-85 1-63 (198)
84 cd04112 Rab26 Rab26 subfamily. 99.5 2.2E-14 4.8E-19 91.8 7.1 64 25-88 1-67 (191)
85 cd04129 Rho2 Rho2 subfamily. 99.5 6.1E-14 1.3E-18 89.4 9.0 65 25-89 2-67 (187)
86 cd01866 Rab2 Rab2 subfamily. 99.5 3.1E-14 6.8E-19 89.1 7.3 65 24-88 4-70 (168)
87 cd01893 Miro1 Miro1 subfamily. 99.5 2.8E-14 6.1E-19 89.2 6.7 63 25-87 1-63 (166)
88 cd01873 RhoBTB RhoBTB subfamil 99.5 7.8E-14 1.7E-18 90.1 8.5 59 25-83 3-78 (195)
89 cd01862 Rab7 Rab7 subfamily. 99.5 5.1E-14 1.1E-18 87.7 7.1 64 25-88 1-66 (172)
90 cd04147 Ras_dva Ras-dva subfam 99.5 4E-14 8.7E-19 91.1 6.5 64 26-89 1-65 (198)
91 KOG0083|consensus 99.5 5.2E-16 1.1E-20 95.1 -2.1 63 29-91 2-67 (192)
92 cd04139 RalA_RalB RalA/RalB su 99.5 6.6E-14 1.4E-18 86.4 7.2 64 25-88 1-65 (164)
93 cd01861 Rab6 Rab6 subfamily. 99.5 5.7E-14 1.2E-18 86.8 6.7 64 25-88 1-66 (161)
94 KOG0081|consensus 99.5 4.1E-16 8.9E-21 97.8 -3.3 65 25-89 10-85 (219)
95 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 3.9E-14 8.4E-19 88.8 5.2 61 27-89 2-62 (164)
96 cd04101 RabL4 RabL4 (Rab-like4 99.5 5.3E-14 1.2E-18 87.2 5.6 63 25-87 1-68 (164)
97 PLN03118 Rab family protein; P 99.5 1.6E-13 3.5E-18 89.0 8.0 64 24-88 14-79 (211)
98 cd01863 Rab18 Rab18 subfamily. 99.5 2.3E-13 4.9E-18 84.1 8.2 64 25-88 1-66 (161)
99 cd04148 RGK RGK subfamily. Th 99.5 2.2E-13 4.7E-18 89.4 8.5 58 25-82 1-61 (221)
100 smart00175 RAB Rab subfamily o 99.5 1.4E-13 3.1E-18 85.0 6.6 63 25-87 1-65 (164)
101 cd04137 RheB Rheb (Ras Homolog 99.5 2E-13 4.2E-18 86.1 7.0 64 25-88 2-66 (180)
102 cd04123 Rab21 Rab21 subfamily. 99.5 2.4E-13 5.2E-18 83.6 6.9 65 25-89 1-67 (162)
103 cd04114 Rab30 Rab30 subfamily. 99.4 6.6E-13 1.4E-17 82.6 7.6 64 24-87 7-72 (169)
104 cd04126 Rab20 Rab20 subfamily. 99.4 4.5E-13 9.8E-18 88.1 6.7 61 25-89 1-62 (220)
105 cd04149 Arf6 Arf6 subfamily. 99.4 1.4E-13 2.9E-18 86.7 3.9 63 23-88 8-70 (168)
106 PLN00223 ADP-ribosylation fact 99.4 2E-13 4.4E-18 87.0 4.6 63 23-88 16-78 (181)
107 cd04150 Arf1_5_like Arf1-Arf5- 99.4 1.6E-13 3.4E-18 85.6 3.9 61 25-88 1-61 (159)
108 PTZ00133 ADP-ribosylation fact 99.4 2.1E-13 4.6E-18 86.9 4.6 62 23-87 16-77 (182)
109 smart00177 ARF ARF-like small 99.4 5.9E-13 1.3E-17 84.2 6.4 62 24-88 13-74 (175)
110 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 5.2E-13 1.1E-17 85.0 5.9 63 24-87 3-68 (183)
111 cd00876 Ras Ras family. The R 99.4 6.9E-13 1.5E-17 81.4 6.1 62 26-87 1-63 (160)
112 TIGR00231 small_GTP small GTP- 99.4 3.7E-12 8E-17 77.1 7.9 63 25-87 2-66 (161)
113 cd00154 Rab Rab family. Rab G 99.4 4.2E-12 9.1E-17 77.3 7.4 62 25-86 1-64 (159)
114 cd04158 ARD1 ARD1 subfamily. 99.3 4.7E-12 1E-16 79.4 7.2 60 26-88 1-60 (169)
115 cd04154 Arl2 Arl2 subfamily. 99.3 2.3E-12 4.9E-17 81.0 5.3 61 24-87 14-74 (173)
116 KOG1673|consensus 99.3 7.8E-13 1.7E-17 82.8 3.0 72 20-91 16-89 (205)
117 cd04161 Arl2l1_Arl13_like Arl2 99.3 1.9E-12 4.1E-17 81.3 4.0 60 26-88 1-60 (167)
118 cd04157 Arl6 Arl6 subfamily. 99.3 4.7E-12 1E-16 78.1 5.4 61 26-88 1-62 (162)
119 cd04159 Arl10_like Arl10-like 99.3 1.6E-11 3.4E-16 74.8 6.9 59 27-87 2-60 (159)
120 cd00879 Sar1 Sar1 subfamily. 99.3 1.5E-11 3.2E-16 78.2 6.9 60 24-86 19-78 (190)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 8.7E-12 1.9E-16 78.6 5.6 62 24-88 15-76 (174)
122 cd04156 ARLTS1 ARLTS1 subfamil 99.3 1.3E-11 2.9E-16 76.1 5.5 60 26-87 1-60 (160)
123 PF08477 Miro: Miro-like prote 99.3 3.5E-11 7.7E-16 71.2 6.9 62 26-87 1-66 (119)
124 cd04160 Arfrp1 Arfrp1 subfamil 99.2 2.3E-11 5E-16 75.5 5.6 60 26-87 1-66 (167)
125 KOG4252|consensus 99.2 9.2E-14 2E-18 88.8 -5.4 65 25-89 21-87 (246)
126 smart00178 SAR Sar1p-like memb 99.2 1.3E-11 2.9E-16 78.6 4.4 61 24-87 17-77 (184)
127 cd04151 Arl1 Arl1 subfamily. 99.2 8.5E-12 1.8E-16 77.2 3.4 60 26-88 1-60 (158)
128 cd00878 Arf_Arl Arf (ADP-ribos 99.2 3.1E-11 6.6E-16 74.4 5.7 60 26-88 1-60 (158)
129 KOG0096|consensus 99.2 2.9E-11 6.3E-16 77.7 5.5 68 23-90 9-78 (216)
130 KOG0070|consensus 99.2 3E-11 6.6E-16 76.9 3.8 69 20-91 13-81 (181)
131 PF00025 Arf: ADP-ribosylation 99.2 3.3E-11 7.1E-16 76.4 3.7 66 22-90 12-77 (175)
132 cd04155 Arl3 Arl3 subfamily. 99.1 2.7E-10 5.8E-15 71.1 7.1 59 24-85 14-72 (173)
133 cd04105 SR_beta Signal recogni 99.1 1.7E-10 3.6E-15 74.9 5.8 61 26-86 2-63 (203)
134 KOG0073|consensus 99.1 1.6E-10 3.5E-15 72.8 5.1 65 24-91 16-80 (185)
135 COG1116 TauB ABC-type nitrate/ 99.1 3.5E-10 7.7E-15 75.3 6.1 52 8-71 16-67 (248)
136 cd01891 TypA_BipA TypA (tyrosi 99.1 3E-10 6.6E-15 72.7 5.6 63 25-87 3-81 (194)
137 cd04171 SelB SelB subfamily. 99.1 2.8E-10 6.1E-15 70.1 5.1 59 26-85 2-65 (164)
138 COG3839 MalK ABC-type sugar tr 99.1 4.6E-10 1E-14 77.9 6.2 50 10-71 18-67 (338)
139 COG3842 PotA ABC-type spermidi 99.1 5.4E-10 1.2E-14 77.9 6.4 52 8-71 18-69 (352)
140 cd01850 CDC_Septin CDC/Septin. 99.0 2.1E-09 4.6E-14 72.9 9.0 61 24-84 4-76 (276)
141 PRK04213 GTP-binding protein; 99.0 3.8E-10 8.1E-15 72.4 5.1 54 24-81 9-62 (201)
142 cd01897 NOG NOG1 is a nucleola 99.0 1.6E-09 3.6E-14 67.2 7.7 56 26-83 2-59 (168)
143 PRK15494 era GTPase Era; Provi 99.0 1.5E-09 3.2E-14 75.5 8.1 58 24-83 52-112 (339)
144 cd01890 LepA LepA subfamily. 99.0 1.1E-09 2.4E-14 68.7 6.4 62 26-87 2-83 (179)
145 COG1126 GlnQ ABC-type polar am 99.0 1.4E-09 3E-14 71.5 6.4 52 8-71 15-66 (240)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.0 5.2E-10 1.1E-14 69.3 4.2 62 26-87 2-66 (168)
147 COG1120 FepC ABC-type cobalami 99.0 1.6E-09 3.5E-14 72.8 6.2 53 7-71 14-66 (258)
148 cd01879 FeoB Ferrous iron tran 99.0 2.3E-09 5E-14 65.7 6.5 57 29-87 1-59 (158)
149 TIGR00450 mnmE_trmE_thdF tRNA 99.0 3.5E-09 7.6E-14 75.9 8.2 59 25-85 204-265 (442)
150 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.0 2.6E-09 5.5E-14 69.6 6.6 52 8-71 17-68 (218)
151 KOG4423|consensus 99.0 1.6E-12 3.5E-17 83.4 -8.4 66 25-90 26-94 (229)
152 TIGR01166 cbiO cobalt transpor 99.0 3.2E-09 6.9E-14 67.9 6.7 52 8-71 5-56 (190)
153 COG1125 OpuBA ABC-type proline 99.0 2.6E-09 5.6E-14 71.9 6.3 53 8-72 14-66 (309)
154 cd03292 ABC_FtsE_transporter F 98.9 4.4E-09 9.5E-14 68.2 6.9 52 8-71 14-65 (214)
155 cd03226 ABC_cobalt_CbiO_domain 98.9 4.2E-09 9E-14 68.1 6.8 52 8-71 13-64 (205)
156 TIGR00960 3a0501s02 Type II (G 98.9 4E-09 8.6E-14 68.6 6.7 51 9-71 17-67 (216)
157 cd03261 ABC_Org_Solvent_Resist 98.9 4.2E-09 9.2E-14 69.4 6.8 52 8-71 13-64 (235)
158 TIGR02315 ABC_phnC phosphonate 98.9 4.1E-09 9E-14 69.6 6.6 52 8-71 15-66 (243)
159 cd03257 ABC_NikE_OppD_transpor 98.9 4.1E-09 8.9E-14 68.9 6.5 51 9-71 19-69 (228)
160 cd03225 ABC_cobalt_CbiO_domain 98.9 4.9E-09 1.1E-13 67.9 6.7 52 8-71 14-65 (211)
161 TIGR03608 L_ocin_972_ABC putat 98.9 4.8E-09 1E-13 67.7 6.6 51 8-70 11-61 (206)
162 cd03263 ABC_subfamily_A The AB 98.9 4.8E-09 1E-13 68.4 6.6 52 8-71 15-66 (220)
163 cd03224 ABC_TM1139_LivF_branch 98.9 5.5E-09 1.2E-13 68.1 6.9 51 9-71 14-64 (222)
164 PRK11629 lolD lipoprotein tran 98.9 5.2E-09 1.1E-13 68.9 6.8 51 9-71 23-73 (233)
165 cd03266 ABC_NatA_sodium_export 98.9 5E-09 1.1E-13 68.2 6.7 51 9-71 19-69 (218)
166 PRK13540 cytochrome c biogenes 98.9 4.5E-09 9.7E-14 67.8 6.4 52 8-71 14-65 (200)
167 cd03259 ABC_Carb_Solutes_like 98.9 4.7E-09 1E-13 68.2 6.5 52 8-71 13-64 (213)
168 cd03229 ABC_Class3 This class 98.9 6.5E-09 1.4E-13 66.0 6.9 52 8-71 13-64 (178)
169 cd03262 ABC_HisP_GlnQ_permease 98.9 4.8E-09 1.1E-13 68.0 6.4 52 8-71 13-64 (213)
170 cd03269 ABC_putative_ATPase Th 98.9 4.4E-09 9.5E-14 68.2 6.2 52 8-71 13-64 (210)
171 cd03301 ABC_MalK_N The N-termi 98.9 5.9E-09 1.3E-13 67.6 6.7 52 8-71 13-64 (213)
172 PF00005 ABC_tran: ABC transpo 98.9 2.7E-09 5.9E-14 64.6 4.8 49 11-71 1-49 (137)
173 cd03258 ABC_MetN_methionine_tr 98.9 5.9E-09 1.3E-13 68.5 6.8 51 9-71 19-69 (233)
174 COG1134 TagH ABC-type polysacc 98.9 4.5E-09 9.7E-14 70.0 6.1 52 8-71 40-91 (249)
175 TIGR02673 FtsE cell division A 98.9 6E-09 1.3E-13 67.7 6.6 52 8-71 15-66 (214)
176 TIGR03864 PQQ_ABC_ATP ABC tran 98.9 6.4E-09 1.4E-13 68.6 6.8 52 8-71 14-65 (236)
177 TIGR01189 ccmA heme ABC export 98.9 7.3E-09 1.6E-13 66.7 6.9 52 8-71 13-64 (198)
178 cd03293 ABC_NrtD_SsuB_transpor 98.9 6.3E-09 1.4E-13 67.9 6.6 52 8-71 17-68 (220)
179 PRK10908 cell division protein 98.9 8.1E-09 1.8E-13 67.5 7.1 52 8-71 15-66 (222)
180 TIGR03410 urea_trans_UrtE urea 98.9 5.8E-09 1.3E-13 68.4 6.4 51 8-70 13-63 (230)
181 cd03256 ABC_PhnC_transporter A 98.9 6.7E-09 1.5E-13 68.5 6.7 52 8-71 14-65 (241)
182 cd03265 ABC_DrrA DrrA is the A 98.9 6.5E-09 1.4E-13 67.9 6.5 52 8-71 13-64 (220)
183 cd03218 ABC_YhbG The ABC trans 98.9 6.3E-09 1.4E-13 68.3 6.5 52 8-71 13-64 (232)
184 PRK11248 tauB taurine transpor 98.9 7.1E-09 1.5E-13 69.4 6.8 52 8-71 14-65 (255)
185 TIGR02868 CydC thiol reductant 98.9 4.9E-09 1.1E-13 76.1 6.5 51 9-71 349-399 (529)
186 PRK13538 cytochrome c biogenes 98.9 7.7E-09 1.7E-13 66.9 6.7 52 8-71 14-65 (204)
187 cd04164 trmE TrmE (MnmE, ThdF, 98.9 2.4E-08 5.1E-13 60.8 8.6 59 25-85 2-63 (157)
188 cd03214 ABC_Iron-Siderophores_ 98.9 8.6E-09 1.9E-13 65.6 6.8 51 9-71 13-63 (180)
189 cd03216 ABC_Carb_Monos_I This 98.9 8.8E-09 1.9E-13 64.7 6.7 52 8-71 13-64 (163)
190 cd03296 ABC_CysA_sulfate_impor 98.9 7.5E-09 1.6E-13 68.4 6.6 52 8-71 15-66 (239)
191 TIGR02211 LolD_lipo_ex lipopro 98.9 8.3E-09 1.8E-13 67.3 6.8 51 9-71 19-69 (221)
192 PRK10895 lipopolysaccharide AB 98.9 7.8E-09 1.7E-13 68.3 6.7 52 8-71 16-67 (241)
193 PRK15056 manganese/iron transp 98.9 8.1E-09 1.8E-13 69.6 6.8 51 8-70 20-70 (272)
194 PRK10584 putative ABC transpor 98.9 8.3E-09 1.8E-13 67.6 6.7 51 9-71 24-74 (228)
195 TIGR02769 nickel_nikE nickel i 98.9 7.8E-09 1.7E-13 69.4 6.7 52 8-71 24-75 (265)
196 TIGR01188 drrA daunorubicin re 98.9 7.9E-09 1.7E-13 70.6 6.8 52 8-71 6-57 (302)
197 cd03230 ABC_DR_subfamily_A Thi 98.9 1.1E-08 2.3E-13 64.8 6.9 51 9-71 14-64 (173)
198 TIGR03598 GTPase_YsxC ribosome 98.9 1.7E-08 3.7E-13 63.9 7.8 64 16-82 10-75 (179)
199 PRK13646 cbiO cobalt transport 98.9 7.8E-09 1.7E-13 70.2 6.7 51 9-71 21-71 (286)
200 COG1124 DppF ABC-type dipeptid 98.9 4.8E-09 1E-13 69.8 5.4 49 9-69 21-69 (252)
201 PRK13543 cytochrome c biogenes 98.9 8.9E-09 1.9E-13 67.1 6.7 52 8-71 24-75 (214)
202 TIGR03005 ectoine_ehuA ectoine 98.9 9.3E-09 2E-13 68.4 6.9 52 8-71 13-64 (252)
203 cd03235 ABC_Metallic_Cations A 98.9 5.8E-09 1.3E-13 67.7 5.7 51 8-70 12-62 (213)
204 cd03219 ABC_Mj1267_LivG_branch 98.9 8E-09 1.7E-13 68.0 6.4 50 9-70 14-63 (236)
205 PRK15112 antimicrobial peptide 98.9 8.8E-09 1.9E-13 69.2 6.7 51 9-71 27-77 (267)
206 COG3638 ABC-type phosphate/pho 98.9 7.6E-09 1.6E-13 68.8 6.1 52 7-70 16-67 (258)
207 cd03215 ABC_Carb_Monos_II This 98.9 9.7E-09 2.1E-13 65.4 6.5 50 10-71 15-64 (182)
208 PRK00454 engB GTP-binding prot 98.9 1E-08 2.2E-13 65.3 6.5 59 23-82 23-81 (196)
209 PRK00093 GTP-binding protein D 98.9 1.5E-08 3.2E-13 72.1 8.0 57 25-83 2-61 (435)
210 cd03233 ABC_PDR_domain1 The pl 98.9 1.2E-08 2.6E-13 66.1 6.9 56 7-71 19-74 (202)
211 cd03260 ABC_PstB_phosphate_tra 98.9 9E-09 2E-13 67.4 6.4 56 8-71 13-69 (227)
212 PRK13649 cbiO cobalt transport 98.9 1E-08 2.2E-13 69.2 6.9 51 9-71 21-71 (280)
213 TIGR02528 EutP ethanolamine ut 98.9 5.2E-09 1.1E-13 63.5 5.0 44 26-81 2-45 (142)
214 PRK11124 artP arginine transpo 98.9 1.1E-08 2.4E-13 67.7 6.8 52 8-71 15-66 (242)
215 PRK10247 putative ABC transpor 98.9 1.1E-08 2.3E-13 67.2 6.7 51 8-70 20-70 (225)
216 PRK13638 cbiO cobalt transport 98.9 8.6E-09 1.9E-13 69.4 6.4 52 8-71 14-65 (271)
217 PRK14250 phosphate ABC transpo 98.9 1.1E-08 2.4E-13 67.7 6.8 52 8-71 16-67 (241)
218 PRK11831 putative ABC transpor 98.9 1.1E-08 2.3E-13 68.9 6.8 52 8-71 20-71 (269)
219 PRK13637 cbiO cobalt transport 98.9 1E-08 2.3E-13 69.6 6.7 51 9-71 21-71 (287)
220 cd03268 ABC_BcrA_bacitracin_re 98.9 1.1E-08 2.3E-13 66.3 6.5 52 8-71 13-64 (208)
221 PRK11300 livG leucine/isoleuci 98.8 1.1E-08 2.3E-13 68.1 6.6 52 8-71 18-69 (255)
222 TIGR03797 NHPM_micro_ABC2 NHPM 98.8 8.3E-09 1.8E-13 77.0 6.7 52 8-71 466-517 (686)
223 cd03295 ABC_OpuCA_Osmoprotecti 98.8 1.3E-08 2.7E-13 67.4 6.8 52 8-71 14-65 (242)
224 PRK09493 glnQ glutamine ABC tr 98.8 1.3E-08 2.7E-13 67.3 6.7 52 8-71 14-65 (240)
225 cd01878 HflX HflX subfamily. 98.8 1.2E-08 2.6E-13 65.6 6.4 58 24-82 41-100 (204)
226 PRK10418 nikD nickel transport 98.8 1.5E-08 3.2E-13 67.6 7.1 56 8-71 16-71 (254)
227 KOG0058|consensus 98.8 5.7E-09 1.2E-13 77.7 5.5 52 8-71 481-532 (716)
228 PRK11614 livF leucine/isoleuci 98.8 1.3E-08 2.9E-13 67.0 6.8 52 8-71 18-69 (237)
229 cd03247 ABCC_cytochrome_bd The 98.8 1.4E-08 2.9E-13 64.5 6.5 50 9-70 16-65 (178)
230 PRK11264 putative amino-acid A 98.8 1.3E-08 2.7E-13 67.6 6.6 52 8-71 16-67 (250)
231 COG4525 TauB ABC-type taurine 98.8 6.7E-09 1.5E-13 67.8 5.1 52 8-71 18-69 (259)
232 PRK13647 cbiO cobalt transport 98.8 1.3E-08 2.8E-13 68.8 6.7 52 8-71 18-69 (274)
233 PRK13539 cytochrome c biogenes 98.8 1.4E-08 3E-13 65.9 6.6 51 9-71 16-66 (207)
234 PRK10575 iron-hydroxamate tran 98.8 1.2E-08 2.7E-13 68.4 6.5 51 9-71 25-75 (265)
235 cd03231 ABC_CcmA_heme_exporter 98.8 1.4E-08 3.1E-13 65.6 6.6 52 8-71 13-64 (201)
236 cd03294 ABC_Pro_Gly_Bertaine T 98.8 1.5E-08 3.1E-13 68.3 6.9 52 8-71 37-88 (269)
237 cd03251 ABCC_MsbA MsbA is an e 98.8 1.3E-08 2.9E-13 66.8 6.5 50 9-70 16-65 (234)
238 TIGR01288 nodI ATP-binding ABC 98.8 1.2E-08 2.6E-13 69.8 6.5 52 8-71 17-68 (303)
239 cd01894 EngA1 EngA1 subfamily. 98.8 1.4E-08 3.1E-13 61.9 6.3 56 28-85 1-59 (157)
240 TIGR03411 urea_trans_UrtD urea 98.8 1.4E-08 3E-13 67.1 6.6 51 9-71 16-66 (242)
241 PRK11153 metN DL-methionine tr 98.8 1.3E-08 2.8E-13 70.9 6.7 52 8-71 18-69 (343)
242 PRK15093 antimicrobial peptide 98.8 1.6E-08 3.4E-13 70.1 7.1 56 8-71 20-75 (330)
243 cd03267 ABC_NatA_like Similar 98.8 1.5E-08 3.3E-13 67.0 6.8 51 8-70 34-84 (236)
244 cd03246 ABCC_Protease_Secretio 98.8 1.8E-08 3.9E-13 63.7 6.8 51 9-71 16-66 (173)
245 TIGR03522 GldA_ABC_ATP gliding 98.8 1.5E-08 3.3E-13 69.2 6.9 52 8-71 15-66 (301)
246 PRK13645 cbiO cobalt transport 98.8 1.6E-08 3.4E-13 68.7 6.8 51 9-71 25-75 (289)
247 TIGR01186 proV glycine betaine 98.8 1.4E-08 3E-13 71.3 6.7 52 8-71 6-57 (363)
248 PRK13634 cbiO cobalt transport 98.8 1.4E-08 3.1E-13 69.1 6.6 52 8-71 20-71 (290)
249 PRK11247 ssuB aliphatic sulfon 98.8 1.5E-08 3.3E-13 68.0 6.6 51 8-70 25-75 (257)
250 PRK13641 cbiO cobalt transport 98.8 1.5E-08 3.2E-13 68.8 6.7 51 9-71 21-71 (287)
251 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 1.8E-08 3.9E-13 66.2 6.9 52 8-71 35-86 (224)
252 TIGR02314 ABC_MetN D-methionin 98.8 1.4E-08 3.1E-13 70.8 6.7 51 9-71 19-69 (343)
253 PRK13536 nodulation factor exp 98.8 1.4E-08 3E-13 70.7 6.6 52 8-71 54-105 (340)
254 PRK13652 cbiO cobalt transport 98.8 1.6E-08 3.4E-13 68.4 6.7 51 9-71 18-68 (277)
255 KOG0071|consensus 98.8 7.7E-09 1.7E-13 64.0 4.6 64 23-89 16-79 (180)
256 cd03252 ABCC_Hemolysin The ABC 98.8 1.5E-08 3.3E-13 66.7 6.4 51 8-70 15-65 (237)
257 TIGR03873 F420-0_ABC_ATP propo 98.8 1.8E-08 3.9E-13 67.2 6.8 52 8-71 14-65 (256)
258 cd04163 Era Era subfamily. Er 98.8 3.1E-08 6.7E-13 60.5 7.3 61 24-84 3-64 (168)
259 PRK13643 cbiO cobalt transport 98.8 1.6E-08 3.5E-13 68.8 6.6 51 9-71 20-70 (288)
260 PRK13633 cobalt transporter AT 98.8 1.8E-08 4E-13 68.2 6.8 52 8-71 23-74 (280)
261 cd03228 ABCC_MRP_Like The MRP 98.8 1.9E-08 4.1E-13 63.5 6.5 51 9-71 16-66 (171)
262 TIGR03265 PhnT2 putative 2-ami 98.8 1.6E-08 3.6E-13 70.7 6.7 51 9-71 18-68 (353)
263 PRK11650 ugpC glycerol-3-phosp 98.8 1.6E-08 3.6E-13 70.7 6.7 52 8-71 17-68 (356)
264 PRK13548 hmuV hemin importer A 98.8 1.9E-08 4.1E-13 67.3 6.7 51 8-70 15-65 (258)
265 cd00882 Ras_like_GTPase Ras-li 98.8 1.5E-08 3.3E-13 60.2 5.7 58 29-86 1-60 (157)
266 PRK11432 fbpC ferric transport 98.8 1.7E-08 3.7E-13 70.6 6.7 51 9-71 20-70 (351)
267 cd03290 ABCC_SUR1_N The SUR do 98.8 1.8E-08 3.8E-13 65.7 6.4 51 8-70 14-64 (218)
268 PRK10619 histidine/lysine/argi 98.8 2.1E-08 4.5E-13 67.0 6.8 52 8-71 18-69 (257)
269 PRK13537 nodulation ABC transp 98.8 1.8E-08 3.8E-13 69.2 6.6 52 8-71 20-71 (306)
270 TIGR02982 heterocyst_DevA ABC 98.8 2.2E-08 4.8E-13 65.4 6.7 52 8-71 18-69 (220)
271 PRK10253 iron-enterobactin tra 98.8 1.8E-08 3.9E-13 67.6 6.4 52 8-71 20-71 (265)
272 PRK05291 trmE tRNA modificatio 98.8 3.8E-08 8.2E-13 70.8 8.4 59 25-85 216-277 (449)
273 PRK11231 fecE iron-dicitrate t 98.8 1.9E-08 4.1E-13 67.1 6.5 51 8-70 15-65 (255)
274 PRK11701 phnK phosphonate C-P 98.8 1.9E-08 4E-13 67.2 6.5 51 8-70 19-69 (258)
275 PRK13644 cbiO cobalt transport 98.8 2.1E-08 4.5E-13 67.7 6.7 51 9-71 16-66 (274)
276 TIGR03740 galliderm_ABC gallid 98.8 2.2E-08 4.8E-13 65.4 6.7 51 8-70 13-63 (223)
277 KOG0705|consensus 98.8 1.8E-09 3.9E-14 78.7 1.6 79 4-82 10-88 (749)
278 TIGR00972 3a0107s01c2 phosphat 98.8 2E-08 4.3E-13 66.6 6.5 51 9-71 15-70 (247)
279 PRK10419 nikE nickel transport 98.8 2.1E-08 4.5E-13 67.5 6.7 52 8-71 25-76 (268)
280 cd03244 ABCC_MRP_domain2 Domai 98.8 1.9E-08 4.1E-13 65.6 6.3 50 9-70 18-67 (221)
281 PRK13639 cbiO cobalt transport 98.8 2.2E-08 4.8E-13 67.6 6.8 51 9-71 16-66 (275)
282 COG1131 CcmA ABC-type multidru 98.8 2.2E-08 4.7E-13 68.5 6.8 52 8-71 18-69 (293)
283 PRK13632 cbiO cobalt transport 98.8 2.1E-08 4.6E-13 67.5 6.7 52 8-71 22-73 (271)
284 TIGR01978 sufC FeS assembly AT 98.8 2E-08 4.4E-13 66.3 6.4 53 8-70 13-65 (243)
285 COG4608 AppF ABC-type oligopep 98.8 1.4E-08 3.1E-13 68.4 5.6 51 9-71 27-77 (268)
286 PRK13648 cbiO cobalt transport 98.8 2.2E-08 4.9E-13 67.3 6.7 51 9-71 23-73 (269)
287 PRK10790 putative multidrug tr 98.8 1.6E-08 3.4E-13 74.4 6.4 52 8-71 354-405 (592)
288 TIGR01184 ntrCD nitrate transp 98.8 1.8E-08 3.9E-13 66.4 6.0 49 11-71 1-49 (230)
289 COG1136 SalX ABC-type antimicr 98.8 2.1E-08 4.5E-13 66.3 6.3 52 8-71 18-69 (226)
290 PRK11000 maltose/maltodextrin 98.8 2E-08 4.3E-13 70.6 6.6 51 9-71 17-67 (369)
291 cd03245 ABCC_bacteriocin_expor 98.8 2.2E-08 4.7E-13 65.3 6.3 51 8-70 17-67 (220)
292 cd03234 ABCG_White The White s 98.8 2.2E-08 4.8E-13 65.6 6.4 55 8-71 20-74 (226)
293 cd03253 ABCC_ATM1_transporter 98.8 2.5E-08 5.4E-13 65.6 6.6 52 8-71 14-65 (236)
294 COG1132 MdlB ABC-type multidru 98.8 1.5E-08 3.1E-13 74.3 6.0 52 8-71 342-393 (567)
295 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.8 2.3E-08 4.9E-13 65.9 6.4 50 9-70 17-66 (238)
296 TIGR03796 NHPM_micro_ABC1 NHPM 98.8 1.5E-08 3.3E-13 75.9 6.2 52 8-71 492-543 (710)
297 PRK11176 lipid transporter ATP 98.8 1.4E-08 3.1E-13 74.4 5.9 52 8-71 356-407 (582)
298 PRK13631 cbiO cobalt transport 98.8 2.6E-08 5.6E-13 68.8 6.8 51 9-71 40-90 (320)
299 TIGR01193 bacteriocin_ABC ABC- 98.8 1.6E-08 3.5E-13 75.8 6.2 52 8-71 487-538 (708)
300 cd03213 ABCG_EPDR ABCG transpo 98.8 2.7E-08 5.8E-13 64.1 6.5 54 8-71 22-75 (194)
301 PRK03003 GTP-binding protein D 98.8 3.9E-08 8.5E-13 71.0 8.0 57 24-82 211-270 (472)
302 PRK13636 cbiO cobalt transport 98.8 2.7E-08 5.8E-13 67.5 6.8 52 8-71 19-70 (283)
303 PRK11174 cysteine/glutathione 98.8 2.1E-08 4.5E-13 73.7 6.6 51 8-71 363-413 (588)
304 cd03254 ABCC_Glucan_exporter_l 98.8 2.3E-08 5.1E-13 65.5 6.2 50 9-70 17-66 (229)
305 PRK13635 cbiO cobalt transport 98.8 2.7E-08 5.8E-13 67.4 6.7 51 9-71 21-71 (279)
306 TIGR02323 CP_lyasePhnK phospho 98.8 2.1E-08 4.6E-13 66.7 6.0 49 9-69 17-65 (253)
307 cd03300 ABC_PotA_N PotA is an 98.8 2.7E-08 5.9E-13 65.5 6.5 52 8-71 13-64 (232)
308 TIGR02857 CydD thiol reductant 98.8 1.9E-08 4.1E-13 73.1 6.2 51 9-71 336-386 (529)
309 PRK10851 sulfate/thiosulfate t 98.8 2.8E-08 6E-13 69.5 6.8 51 9-71 16-66 (353)
310 PRK11022 dppD dipeptide transp 98.8 3.1E-08 6.8E-13 68.5 7.0 55 9-71 21-75 (326)
311 COG1119 ModF ABC-type molybden 98.8 1.4E-08 3E-13 67.7 5.0 44 7-58 43-86 (257)
312 cd03248 ABCC_TAP TAP, the Tran 98.8 2.1E-08 4.6E-13 65.6 5.8 50 9-70 28-77 (226)
313 cd03299 ABC_ModC_like Archeal 98.8 3.6E-08 7.7E-13 65.1 6.8 50 9-70 13-62 (235)
314 PRK13541 cytochrome c biogenes 98.8 3.2E-08 6.9E-13 63.6 6.4 49 11-71 16-64 (195)
315 COG4619 ABC-type uncharacteriz 98.8 2.3E-08 4.9E-13 64.0 5.6 53 8-72 16-68 (223)
316 TIGR03375 type_I_sec_LssB type 98.8 2.2E-08 4.8E-13 74.9 6.4 52 8-71 478-529 (694)
317 COG4133 CcmA ABC-type transpor 98.8 2.3E-08 5.1E-13 64.6 5.6 57 3-71 10-66 (209)
318 PRK13650 cbiO cobalt transport 98.8 3.2E-08 7E-13 67.0 6.7 51 9-71 21-71 (279)
319 TIGR00958 3a01208 Conjugate Tr 98.8 1.8E-08 3.9E-13 75.7 5.9 51 9-71 495-545 (711)
320 PRK14267 phosphate ABC transpo 98.8 3.2E-08 6.9E-13 65.8 6.5 56 8-71 17-73 (253)
321 TIGR00968 3a0106s01 sulfate AB 98.8 3.5E-08 7.6E-13 65.2 6.7 52 8-71 13-64 (237)
322 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 4.1E-08 8.8E-13 60.6 6.5 49 9-69 14-62 (144)
323 PRK09536 btuD corrinoid ABC tr 98.8 3E-08 6.6E-13 70.4 6.7 52 8-71 16-67 (402)
324 PRK09452 potA putrescine/sperm 98.8 3E-08 6.5E-13 69.9 6.6 51 9-71 28-78 (375)
325 TIGR02770 nickel_nikD nickel i 98.8 2.9E-08 6.2E-13 65.3 6.2 53 11-71 2-54 (230)
326 cd01898 Obg Obg subfamily. Th 98.8 3.8E-08 8.3E-13 61.0 6.4 56 26-82 2-59 (170)
327 PRK11160 cysteine/glutathione 98.7 2.6E-08 5.7E-13 73.2 6.4 52 8-71 353-404 (574)
328 PRK14259 phosphate ABC transpo 98.7 3.3E-08 7.1E-13 66.6 6.4 55 9-71 27-82 (269)
329 COG2274 SunT ABC-type bacterio 98.7 1.8E-08 3.9E-13 75.8 5.7 51 9-71 487-537 (709)
330 PRK13651 cobalt transporter AT 98.7 3.3E-08 7.1E-13 67.9 6.4 49 9-69 21-69 (305)
331 PRK11308 dppF dipeptide transp 98.7 3.9E-08 8.4E-13 68.1 6.8 52 8-71 28-79 (327)
332 PRK13547 hmuV hemin importer A 98.7 4E-08 8.6E-13 66.5 6.7 52 8-71 14-73 (272)
333 cd01895 EngA2 EngA2 subfamily. 98.7 8.5E-08 1.8E-12 59.1 7.7 58 25-84 3-63 (174)
334 PRK10070 glycine betaine trans 98.7 3.2E-08 7E-13 70.3 6.4 50 10-71 43-92 (400)
335 cd03369 ABCC_NFT1 Domain 2 of 98.7 3.7E-08 8.1E-13 63.7 6.2 50 9-70 22-71 (207)
336 KOG0074|consensus 98.7 5.1E-08 1.1E-12 60.5 6.4 65 22-88 15-79 (185)
337 cd03250 ABCC_MRP_domain1 Domai 98.7 4.1E-08 8.8E-13 63.4 6.4 48 9-68 19-66 (204)
338 cd03223 ABCD_peroxisomal_ALDP 98.7 4.6E-08 1E-12 61.6 6.4 49 8-68 14-62 (166)
339 PRK13640 cbiO cobalt transport 98.7 3.9E-08 8.5E-13 66.6 6.5 51 9-71 21-74 (282)
340 PRK14235 phosphate transporter 98.7 3.7E-08 8E-13 66.2 6.3 56 8-71 32-88 (267)
341 PRK14247 phosphate ABC transpo 98.7 5E-08 1.1E-12 64.8 6.9 55 9-71 17-72 (250)
342 cd03232 ABC_PDR_domain2 The pl 98.7 4.5E-08 9.8E-13 62.9 6.5 54 8-71 20-73 (192)
343 COG0411 LivG ABC-type branched 98.7 5.5E-09 1.2E-13 69.5 2.2 49 11-71 20-68 (250)
344 cd03288 ABCC_SUR2 The SUR doma 98.7 4.6E-08 1E-12 65.4 6.7 52 8-71 34-85 (257)
345 COG4987 CydC ABC-type transpor 98.7 2E-08 4.3E-13 73.0 5.2 54 6-71 349-402 (573)
346 TIGR03258 PhnT 2-aminoethylpho 98.7 4.2E-08 9.2E-13 68.8 6.7 51 9-71 19-71 (362)
347 PRK13657 cyclic beta-1,2-gluca 98.7 3.3E-08 7.2E-13 72.7 6.4 52 8-71 348-399 (588)
348 cd03298 ABC_ThiQ_thiamine_tran 98.7 4.5E-08 9.8E-13 63.5 6.4 48 12-71 15-62 (211)
349 PRK15079 oligopeptide ABC tran 98.7 4.7E-08 1E-12 67.8 6.8 52 8-71 34-85 (331)
350 PRK10522 multidrug transporter 98.7 3.9E-08 8.4E-13 71.9 6.7 51 9-71 337-387 (547)
351 COG0410 LivF ABC-type branched 98.7 5.3E-08 1.2E-12 64.4 6.6 52 8-71 16-67 (237)
352 PRK14241 phosphate transporter 98.7 4.7E-08 1E-12 65.3 6.5 56 8-71 17-73 (258)
353 cd01889 SelB_euk SelB subfamil 98.7 2.1E-08 4.4E-13 64.2 4.6 60 25-84 1-81 (192)
354 COG1129 MglA ABC-type sugar tr 98.7 3.2E-08 6.9E-13 71.7 6.0 52 9-72 22-73 (500)
355 PRK09984 phosphonate/organopho 98.7 5.3E-08 1.1E-12 65.2 6.7 55 8-71 17-71 (262)
356 PRK13642 cbiO cobalt transport 98.7 4.9E-08 1.1E-12 66.0 6.6 51 9-71 21-71 (277)
357 PRK11607 potG putrescine trans 98.7 4.8E-08 1E-12 68.9 6.7 51 9-71 33-83 (377)
358 PRK14269 phosphate ABC transpo 98.7 6.2E-08 1.3E-12 64.3 6.9 54 9-71 16-69 (246)
359 PRK14237 phosphate transporter 98.7 5.3E-08 1.2E-12 65.5 6.6 56 8-71 33-89 (267)
360 PRK15177 Vi polysaccharide exp 98.7 4.7E-08 1E-12 63.8 6.1 41 10-58 2-42 (213)
361 PRK14242 phosphate transporter 98.7 4.6E-08 9.9E-13 65.1 6.1 56 8-71 19-75 (253)
362 cd04104 p47_IIGP_like p47 (47- 98.7 5.6E-08 1.2E-12 62.7 6.3 60 25-84 2-65 (197)
363 cd03264 ABC_drug_resistance_li 98.7 4.5E-08 9.8E-13 63.5 5.9 50 9-71 14-63 (211)
364 PRK14238 phosphate transporter 98.7 6E-08 1.3E-12 65.4 6.6 56 8-71 37-93 (271)
365 CHL00131 ycf16 sulfate ABC tra 98.7 6.5E-08 1.4E-12 64.3 6.7 53 8-70 20-72 (252)
366 PRK10762 D-ribose transporter 98.7 4.8E-08 1E-12 70.7 6.5 50 9-70 18-67 (501)
367 PRK14254 phosphate ABC transpo 98.7 6.4E-08 1.4E-12 65.8 6.7 56 8-71 52-108 (285)
368 PRK13546 teichoic acids export 98.7 6.9E-08 1.5E-12 65.1 6.8 50 8-69 37-86 (264)
369 PRK10744 pstB phosphate transp 98.7 5.8E-08 1.2E-12 65.0 6.4 55 9-71 27-82 (260)
370 TIGR02324 CP_lyasePhnL phospho 98.7 5.6E-08 1.2E-12 63.5 6.2 47 9-67 22-68 (224)
371 PRK14273 phosphate ABC transpo 98.7 5.9E-08 1.3E-12 64.6 6.4 56 8-71 20-76 (254)
372 TIGR00487 IF-2 translation ini 98.7 5.7E-08 1.2E-12 71.9 6.8 64 25-89 88-153 (587)
373 PRK09580 sufC cysteine desulfu 98.7 5.7E-08 1.2E-12 64.3 6.2 52 8-69 14-65 (248)
374 cd03217 ABC_FeS_Assembly ABC-t 98.7 6.5E-08 1.4E-12 62.5 6.3 54 8-71 13-66 (200)
375 PRK09700 D-allose transporter 98.7 5.2E-08 1.1E-12 70.7 6.4 51 8-70 18-68 (510)
376 KOG0057|consensus 98.7 2.3E-08 5E-13 72.8 4.6 51 8-71 365-415 (591)
377 PRK10771 thiQ thiamine transpo 98.7 6.1E-08 1.3E-12 63.8 6.3 47 12-70 16-62 (232)
378 PRK14251 phosphate ABC transpo 98.7 6.9E-08 1.5E-12 64.2 6.5 56 8-71 17-73 (251)
379 TIGR01842 type_I_sec_PrtD type 98.7 4.9E-08 1.1E-12 71.3 6.3 52 8-71 331-382 (544)
380 PRK14268 phosphate ABC transpo 98.7 8E-08 1.7E-12 64.2 6.8 56 8-71 25-81 (258)
381 PRK14262 phosphate ABC transpo 98.7 7.5E-08 1.6E-12 63.9 6.6 56 8-71 16-72 (250)
382 PRK03003 GTP-binding protein D 98.7 1.1E-07 2.4E-12 68.6 8.0 57 25-83 39-98 (472)
383 cd01876 YihA_EngB The YihA (En 98.7 8.3E-08 1.8E-12 58.7 6.3 54 26-82 1-56 (170)
384 PRK15439 autoinducer 2 ABC tra 98.7 6.5E-08 1.4E-12 70.3 6.7 51 8-70 24-74 (510)
385 PRK09544 znuC high-affinity zi 98.7 7.9E-08 1.7E-12 64.3 6.6 49 8-68 17-65 (251)
386 PRK10789 putative multidrug tr 98.7 5E-08 1.1E-12 71.6 6.1 52 8-71 328-379 (569)
387 TIGR02204 MsbA_rel ABC transpo 98.7 4.9E-08 1.1E-12 71.5 6.0 51 9-71 354-404 (576)
388 cd01896 DRG The developmentall 98.7 1.8E-07 3.9E-12 62.0 8.2 57 26-84 2-60 (233)
389 TIGR01846 type_I_sec_HlyB type 98.7 5.3E-08 1.2E-12 72.9 6.3 52 8-71 470-521 (694)
390 TIGR02203 MsbA_lipidA lipid A 98.7 4.7E-08 1E-12 71.4 5.9 52 8-71 345-396 (571)
391 TIGR03594 GTPase_EngA ribosome 98.7 1.2E-07 2.7E-12 67.2 7.8 55 26-82 1-58 (429)
392 cd04167 Snu114p Snu114p subfam 98.7 4E-08 8.6E-13 64.0 4.9 60 26-85 2-85 (213)
393 PRK14274 phosphate ABC transpo 98.7 8.8E-08 1.9E-12 64.0 6.7 56 8-71 25-81 (259)
394 PRK14240 phosphate transporter 98.7 8.3E-08 1.8E-12 63.7 6.5 56 8-71 16-72 (250)
395 PRK10982 galactose/methyl gala 98.7 6.3E-08 1.4E-12 69.9 6.4 51 8-70 11-61 (491)
396 TIGR01194 cyc_pep_trnsptr cycl 98.7 6.5E-08 1.4E-12 70.9 6.5 51 9-71 356-406 (555)
397 PRK09473 oppD oligopeptide tra 98.7 7.4E-08 1.6E-12 66.8 6.4 54 9-71 30-83 (330)
398 TIGR03594 GTPase_EngA ribosome 98.7 1.6E-07 3.5E-12 66.6 8.3 62 24-87 172-236 (429)
399 PRK14248 phosphate ABC transpo 98.7 8.5E-08 1.8E-12 64.4 6.5 56 8-71 34-90 (268)
400 TIGR01277 thiQ thiamine ABC tr 98.7 9.1E-08 2E-12 62.2 6.4 50 10-71 13-62 (213)
401 PRK10762 D-ribose transporter 98.7 5.5E-08 1.2E-12 70.5 5.8 52 8-71 265-316 (501)
402 PRK14256 phosphate ABC transpo 98.7 1.1E-07 2.5E-12 63.2 6.9 56 8-71 17-73 (252)
403 PRK14249 phosphate ABC transpo 98.7 1E-07 2.2E-12 63.4 6.6 56 8-71 17-73 (251)
404 cd03291 ABCC_CFTR1 The CFTR su 98.7 9.2E-08 2E-12 65.1 6.5 49 8-68 50-98 (282)
405 KOG0055|consensus 98.7 4.3E-08 9.2E-13 76.7 5.4 52 8-71 366-417 (1228)
406 PRK14272 phosphate ABC transpo 98.7 9.1E-08 2E-12 63.6 6.4 56 8-71 17-73 (252)
407 COG0396 sufC Cysteine desulfur 98.7 5.3E-08 1.2E-12 64.6 5.1 54 8-71 17-70 (251)
408 PRK14263 phosphate ABC transpo 98.7 9.8E-08 2.1E-12 64.1 6.5 56 8-71 21-77 (261)
409 PRK14261 phosphate ABC transpo 98.7 1.3E-07 2.9E-12 62.9 7.1 56 8-71 19-75 (253)
410 COG1121 ZnuC ABC-type Mn/Zn tr 98.7 7.9E-08 1.7E-12 64.6 5.9 49 9-69 18-66 (254)
411 cd00267 ABC_ATPase ABC (ATP-bi 98.7 1.5E-07 3.2E-12 58.5 6.9 51 9-71 13-63 (157)
412 PRK10636 putative ABC transpor 98.6 7.2E-08 1.6E-12 71.8 6.3 50 8-69 14-63 (638)
413 TIGR00436 era GTP-binding prot 98.6 1.5E-07 3.3E-12 63.4 7.3 58 26-84 2-61 (270)
414 TIGR03156 GTP_HflX GTP-binding 98.6 1.3E-07 2.8E-12 66.2 7.1 56 25-81 190-247 (351)
415 TIGR03415 ABC_choXWV_ATP choli 98.6 1E-07 2.3E-12 67.3 6.7 50 8-69 37-86 (382)
416 COG2884 FtsE Predicted ATPase 98.6 6.7E-08 1.5E-12 62.7 5.2 52 8-71 15-66 (223)
417 PRK11288 araG L-arabinose tran 98.6 9E-08 2E-12 69.3 6.5 50 9-70 18-67 (501)
418 PRK14244 phosphate ABC transpo 98.6 9.4E-08 2E-12 63.6 6.1 56 8-71 18-74 (251)
419 cd03222 ABC_RNaseL_inhibitor T 98.6 1.5E-07 3.2E-12 60.2 6.8 50 10-72 15-64 (177)
420 cd03238 ABC_UvrA The excision 98.6 4.7E-08 1E-12 62.4 4.5 40 2-45 2-41 (176)
421 COG1135 AbcC ABC-type metal io 98.6 9.4E-08 2E-12 65.8 6.2 51 9-71 20-70 (339)
422 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.6E-07 3.4E-12 57.6 6.6 54 25-81 84-138 (141)
423 COG1117 PstB ABC-type phosphat 98.6 7.1E-08 1.5E-12 63.6 5.3 57 8-71 20-76 (253)
424 PRK14239 phosphate transporter 98.6 1.5E-07 3.2E-12 62.5 6.9 54 8-71 18-74 (252)
425 PRK14270 phosphate ABC transpo 98.6 1.2E-07 2.6E-12 63.1 6.4 56 8-71 17-73 (251)
426 PRK09700 D-allose transporter 98.6 8.5E-08 1.8E-12 69.6 6.1 50 9-70 277-326 (510)
427 PRK11147 ABC transporter ATPas 98.6 9.5E-08 2.1E-12 71.1 6.5 49 8-68 16-64 (635)
428 PRK10261 glutathione transport 98.6 1.1E-07 2.4E-12 70.6 6.8 51 9-71 338-388 (623)
429 PRK09518 bifunctional cytidyla 98.6 1.6E-07 3.4E-12 70.9 7.6 56 25-82 451-509 (712)
430 PRK14246 phosphate ABC transpo 98.6 1.4E-07 3E-12 63.2 6.6 43 8-58 23-65 (257)
431 COG1127 Ttg2A ABC-type transpo 98.6 9.7E-08 2.1E-12 63.7 5.7 53 7-71 20-72 (263)
432 PRK13549 xylose transporter AT 98.6 1E-07 2.2E-12 69.2 6.3 52 9-70 19-70 (506)
433 PRK14275 phosphate ABC transpo 98.6 1.4E-07 2.9E-12 64.2 6.6 54 9-71 53-108 (286)
434 PRK14271 phosphate ABC transpo 98.6 1.4E-07 3.1E-12 63.8 6.6 56 8-71 34-90 (276)
435 PRK15134 microcin C ABC transp 98.6 1.2E-07 2.7E-12 69.1 6.5 55 9-71 23-78 (529)
436 TIGR01192 chvA glucan exporter 98.6 1E-07 2.2E-12 70.3 6.2 51 9-71 349-399 (585)
437 PRK14255 phosphate ABC transpo 98.6 1.9E-07 4.1E-12 62.1 6.9 56 8-71 18-74 (252)
438 PRK15064 ABC transporter ATP-b 98.6 1.2E-07 2.6E-12 69.1 6.4 49 8-68 14-62 (530)
439 KOG0055|consensus 98.6 5.3E-08 1.2E-12 76.1 4.8 52 8-71 1003-1054(1228)
440 PRK14243 phosphate transporter 98.6 1.3E-07 2.9E-12 63.4 6.2 56 8-71 23-79 (264)
441 PRK10938 putative molybdenum t 98.6 9.9E-08 2.1E-12 68.9 5.8 49 9-69 17-65 (490)
442 PRK11288 araG L-arabinose tran 98.6 1E-07 2.2E-12 69.1 5.9 51 9-71 267-317 (501)
443 PLN03232 ABC transporter C fam 98.6 9.5E-08 2.1E-12 76.7 6.2 52 8-71 1249-1300(1495)
444 PRK11144 modC molybdate transp 98.6 1.5E-07 3.2E-12 65.8 6.4 48 12-71 15-62 (352)
445 TIGR02142 modC_ABC molybdenum 98.6 1.5E-07 3.2E-12 65.8 6.4 47 13-71 15-61 (354)
446 PRK14253 phosphate ABC transpo 98.6 1.5E-07 3.3E-12 62.4 6.2 56 8-71 16-72 (249)
447 PLN03130 ABC transporter C fam 98.6 1.2E-07 2.5E-12 76.7 6.5 51 9-71 1253-1303(1622)
448 PRK10982 galactose/methyl gala 98.6 1.3E-07 2.7E-12 68.4 6.1 51 9-71 262-312 (491)
449 COG4559 ABC-type hemin transpo 98.6 1E-07 2.2E-12 62.9 5.1 52 7-70 13-64 (259)
450 PRK14236 phosphate transporter 98.6 1.8E-07 4E-12 63.0 6.5 56 8-71 38-94 (272)
451 COG1122 CbiO ABC-type cobalt t 98.6 2.2E-07 4.8E-12 61.9 6.7 52 8-71 17-68 (235)
452 cd01881 Obg_like The Obg-like 98.6 9.8E-08 2.1E-12 59.3 4.8 52 29-82 1-55 (176)
453 PRK15439 autoinducer 2 ABC tra 98.6 1.2E-07 2.6E-12 68.9 5.9 51 9-71 277-327 (510)
454 COG4167 SapF ABC-type antimicr 98.6 1.3E-07 2.9E-12 61.5 5.4 51 9-71 27-77 (267)
455 PRK03695 vitamin B12-transport 98.6 1.9E-07 4.2E-12 62.2 6.4 49 10-71 11-59 (248)
456 CHL00189 infB translation init 98.6 8.4E-08 1.8E-12 72.5 5.0 64 25-88 245-312 (742)
457 PRK14265 phosphate ABC transpo 98.6 2.7E-07 5.8E-12 62.4 7.0 55 9-71 34-89 (274)
458 TIGR01393 lepA GTP-binding pro 98.6 2.2E-07 4.7E-12 69.0 7.1 62 25-86 4-85 (595)
459 PRK14266 phosphate ABC transpo 98.6 2.5E-07 5.4E-12 61.4 6.7 56 8-71 16-72 (250)
460 PRK14264 phosphate ABC transpo 98.6 2.3E-07 4.9E-12 63.6 6.6 56 8-71 58-114 (305)
461 PRK10261 glutathione transport 98.6 2.2E-07 4.7E-12 69.1 7.0 49 9-69 30-78 (623)
462 COG1118 CysA ABC-type sulfate/ 98.6 1.9E-07 4E-12 64.3 6.1 47 11-69 18-64 (345)
463 TIGR02633 xylG D-xylose ABC tr 98.6 1.8E-07 4E-12 67.6 6.4 53 8-70 14-66 (500)
464 PRK14252 phosphate ABC transpo 98.6 2.2E-07 4.7E-12 62.3 6.3 54 9-70 30-84 (265)
465 PRK14260 phosphate ABC transpo 98.6 2.1E-07 4.6E-12 62.2 6.2 54 9-71 21-76 (259)
466 PRK14245 phosphate ABC transpo 98.6 2.7E-07 5.8E-12 61.4 6.6 55 8-71 16-72 (250)
467 PRK11147 ABC transporter ATPas 98.6 2.6E-07 5.7E-12 68.8 7.1 43 8-58 332-374 (635)
468 TIGR00957 MRP_assoc_pro multi 98.6 1.7E-07 3.7E-12 75.4 6.5 51 9-71 1300-1350(1522)
469 COG1123 ATPase components of v 98.6 1.8E-07 3.9E-12 68.4 6.0 50 9-70 305-354 (539)
470 PRK14258 phosphate ABC transpo 98.6 2.9E-07 6.2E-12 61.7 6.6 37 9-49 21-57 (261)
471 cd03289 ABCC_CFTR2 The CFTR su 98.6 2.5E-07 5.4E-12 62.8 6.2 51 8-71 17-67 (275)
472 TIGR02633 xylG D-xylose ABC tr 98.6 2E-07 4.4E-12 67.4 6.1 51 9-71 274-325 (500)
473 PTZ00243 ABC transporter; Prov 98.5 2.1E-07 4.6E-12 75.0 6.8 52 9-72 1324-1375(1560)
474 PRK14257 phosphate ABC transpo 98.5 4.1E-07 8.9E-12 63.1 7.3 55 9-71 96-151 (329)
475 PRK13549 xylose transporter AT 98.5 2.3E-07 5E-12 67.3 6.2 51 9-71 276-327 (506)
476 PRK11819 putative ABC transpor 98.5 2.5E-07 5.4E-12 67.9 6.4 43 8-58 20-62 (556)
477 cd00881 GTP_translation_factor 98.5 2.6E-07 5.6E-12 58.0 5.5 60 26-85 1-76 (189)
478 COG3845 ABC-type uncharacteriz 98.5 2.4E-07 5.2E-12 66.8 5.8 51 11-73 20-70 (501)
479 COG4618 ArpD ABC-type protease 98.5 1.5E-07 3.1E-12 68.4 4.7 58 7-78 348-405 (580)
480 PF01926 MMR_HSR1: 50S ribosom 98.5 8.8E-07 1.9E-11 52.3 7.4 55 26-82 1-58 (116)
481 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 2.8E-07 6.2E-12 67.5 6.2 43 8-58 18-60 (552)
482 PRK13545 tagH teichoic acids e 98.5 4E-07 8.8E-12 66.7 6.9 50 9-70 38-87 (549)
483 PF04670 Gtr1_RagA: Gtr1/RagA 98.5 2.6E-07 5.7E-12 61.4 5.4 58 26-85 1-62 (232)
484 PRK15064 ABC transporter ATP-b 98.5 3.2E-07 6.9E-12 66.9 6.3 48 9-68 333-380 (530)
485 COG4586 ABC-type uncharacteriz 98.5 1.8E-07 4E-12 63.6 4.6 47 10-68 39-85 (325)
486 KOG0056|consensus 98.5 1.2E-07 2.7E-12 69.1 4.0 52 8-71 551-602 (790)
487 PRK15134 microcin C ABC transp 98.5 4.2E-07 9E-12 66.3 6.7 51 8-71 299-349 (529)
488 cd03237 ABC_RNaseL_inhibitor_d 98.5 6.1E-07 1.3E-11 59.9 6.9 50 11-72 10-64 (246)
489 COG4175 ProV ABC-type proline/ 98.5 3.2E-07 6.9E-12 63.6 5.5 49 11-71 44-92 (386)
490 COG4152 ABC-type uncharacteriz 98.5 1.5E-07 3.1E-12 63.3 3.7 61 8-80 15-75 (300)
491 COG4988 CydD ABC-type transpor 98.5 3.1E-07 6.8E-12 67.2 5.7 51 9-71 335-385 (559)
492 TIGR03771 anch_rpt_ABC anchore 98.5 3.2E-07 6.9E-12 60.2 5.3 42 17-70 2-43 (223)
493 COG4615 PvdE ABC-type sideroph 98.5 2.6E-07 5.7E-12 65.8 5.1 50 11-72 339-388 (546)
494 PRK10938 putative molybdenum t 98.5 3.3E-07 7.1E-12 66.2 5.7 36 9-48 274-309 (490)
495 PRK10636 putative ABC transpor 98.5 3.9E-07 8.4E-12 68.0 6.2 47 9-67 326-372 (638)
496 TIGR03269 met_CoM_red_A2 methy 98.5 4.9E-07 1.1E-11 65.8 6.3 47 9-67 298-344 (520)
497 PTZ00265 multidrug resistance 98.5 2.7E-07 5.9E-12 74.0 5.3 38 9-50 1182-1219(1466)
498 KOG0075|consensus 98.5 2.5E-08 5.4E-13 62.2 -0.5 63 24-88 20-82 (186)
499 PLN03211 ABC transporter G-25; 98.4 6.1E-07 1.3E-11 67.3 6.6 52 8-71 81-134 (659)
500 PRK10535 macrolide transporter 98.4 6.9E-07 1.5E-11 66.8 6.8 51 9-71 22-72 (648)
No 1
>KOG0084|consensus
Probab=99.88 E-value=7.6e-23 Score=130.86 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=62.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
+.+|++|+|++|||||+|+.||..+.|.+.|..|.| +| .+++.++|+.++++||||+|||||+++..++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~sy 78 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSY 78 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhh
Confidence 448999999999999999999999999999999966 57 6899999999999999999999999876554
No 2
>KOG0094|consensus
Probab=99.86 E-value=4.7e-22 Score=127.34 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=64.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP 92 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~ 92 (93)
..+|++++|+.+||||||+.||+.+.|...|.+|.| +| ++++.+.|..+.|++|||+|||||+++.|++.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~ 92 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 92 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhc
Confidence 348999999999999999999999999999999965 67 78999999999999999999999999988753
No 3
>KOG0092|consensus
Probab=99.86 E-value=1.4e-21 Score=124.69 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=63.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP 92 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~ 92 (93)
.++|++++|+.+||||||+.||..+.|.+...||.| .| .+.+.+++..++++||||+|||+|.++.|.+|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYy 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYY 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccccee
Confidence 358999999999999999999999999998889944 56 78999999999999999999999999988764
No 4
>KOG0080|consensus
Probab=99.84 E-value=6.7e-21 Score=119.26 Aligned_cols=69 Identities=26% Similarity=0.389 Sum_probs=62.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP 92 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~ 92 (93)
.+|++++|++|||||+|+.||..+.|.++.+.|.| +| .+.+.++|+.+++-||||+|||+|+.+.|+++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyy 81 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYY 81 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHh
Confidence 48999999999999999999999999998777655 68 68899999999999999999999999988764
No 5
>KOG0394|consensus
Probab=99.83 E-value=8.9e-21 Score=120.57 Aligned_cols=68 Identities=26% Similarity=0.351 Sum_probs=62.2
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..+||+++|++|||||||+++|..+.|...|..|. .+| .+++.+|++.+.++||||+|||||+++.-.
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~a 77 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVA 77 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccc
Confidence 34899999999999999999999999999999994 467 799999999999999999999999998643
No 6
>KOG0098|consensus
Probab=99.81 E-value=1.8e-20 Score=119.42 Aligned_cols=70 Identities=27% Similarity=0.301 Sum_probs=63.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP 92 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~ 92 (93)
+.+|++++|+.|||||+|+.||+.+.|.+-++.|.| +| .+.+.+|+++|+++||||+|||.|+++++++|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syY 76 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYY 76 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHh
Confidence 348999999999999999999999999999988855 68 78899999999999999999999998876653
No 7
>KOG0095|consensus
Probab=99.80 E-value=3e-20 Score=115.40 Aligned_cols=67 Identities=28% Similarity=0.428 Sum_probs=60.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
+|+++||..|||||+|+.||..+.|++-...|.| .| .+++.++|..++++||||+|||+|+++..++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsy 76 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSY 76 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHH
Confidence 8999999999999999999999999887767754 57 7999999999999999999999999886654
No 8
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.80 E-value=2.8e-19 Score=114.33 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=61.7
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
..+|++++|+.|||||||+.||+.+.|.++|.||.+ .|.+.+.+++..+.+++|||+||++|..+++..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~ 73 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLS 73 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhh
Confidence 348999999999999999999999999999999954 567788899999999999999999998887643
No 9
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.79 E-value=3.6e-19 Score=114.16 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=60.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
.+|++++|+.|||||||+.||+.+.|.++|.||.+ .|.+.+.+++..+.+++|||+||++|+.+++..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhh
Confidence 38999999999999999999999999999999954 566667889999999999999999999887643
No 10
>KOG0078|consensus
Probab=99.79 E-value=7.7e-20 Score=118.05 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=62.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP 92 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~ 92 (93)
.+|++++||+|||||+++.||..+.|...+..|.| +| .++++++|+.+.+++|||+|||+|+.+.++++
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy 82 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY 82 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence 48999999999999999999999999998888855 67 68999999999999999999999998876654
No 11
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.79 E-value=1.1e-18 Score=111.20 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=60.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|+.|||||+|+.||+.+.|.++|.||. +.|.+.+.+++..+++++|||+|+++|+.+++.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchh
Confidence 699999999999999999999999999999995 456677889999999999999999999988765
No 12
>KOG0393|consensus
Probab=99.79 E-value=6.7e-20 Score=118.20 Aligned_cols=69 Identities=25% Similarity=0.343 Sum_probs=64.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-cceeEEEEEEC-CeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVID-GHSHLLLIRDEGVPPELQPPNPSAP 92 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~~~~~~~~-g~~i~~~i~d~~g~~~~~~~~~~~~ 92 (93)
..|+++|||.+||||+|+..|..+.|+++|.|| .++|...+.++ |+.+.+.+|||+|||+|..+||..+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY 74 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSY 74 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCC
Confidence 489999999999999999999999999999999 77898899995 9999999999999999999998754
No 13
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=1.1e-18 Score=111.05 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=60.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
+|++++|++|||||||+.+|+.+.|+.+|.||. ..|.+.+.+++..+.+++|||+|+++|..+++..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~ 69 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLC 69 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhh
Confidence 799999999999999999999999999999995 4567778899999999999999999998877653
No 14
>KOG0087|consensus
Probab=99.77 E-value=7.4e-19 Score=113.64 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=61.0
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
-+|++++||+|||||-|+.||..+.|..+-.+|.| +| .+.+.++++.++.+||||+|||||+.+..++
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaY 83 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAY 83 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchh
Confidence 38999999999999999999999999998888855 56 6889999999999999999999999775443
No 15
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.76 E-value=4.3e-18 Score=107.86 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=59.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|+.|||||||+.+|+.+.|.++|.||.+ .|...+.+++..+.+.+|||+|+++|..+++.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhh
Confidence 7999999999999999999999999988999954 56667788999999999999999999877654
No 16
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.76 E-value=1.9e-18 Score=113.73 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=60.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
.|+++||+.|||||||+.+|+.+.|+++|.||. ..|...+.+++..+.+.+|||+|+++|..+++..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~ 69 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLA 69 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHh
Confidence 799999999999999999999999999999994 4677778899999999999999999998877653
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=2.1e-18 Score=114.14 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=60.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..+|+++||+.|||||+|+.+|+.+.|.++|.||. ..|...+.+++..+.+++|||+|+++|..+++.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~ 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPL 80 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHH
Confidence 34899999999999999999999999999999994 467667889999999999999999999877654
No 18
>KOG0086|consensus
Probab=99.74 E-value=6.6e-19 Score=109.76 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=60.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
+|++++|++|.|||+|+++|+.++|.+....|.| +| ++.+.+.++.++++||||+|||+|++..+++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsY 78 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSY 78 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHH
Confidence 7999999999999999999999999988777755 67 7888999999999999999999999876554
No 19
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.74 E-value=1.1e-17 Score=106.86 Aligned_cols=66 Identities=27% Similarity=0.461 Sum_probs=58.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|+.|||||||+.||+.+.|.++|.||.+ ++ .+.+.+++..+.+++||++|+++|..+++.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~ 68 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPL 68 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHH
Confidence 4899999999999999999999999999999954 45 578899999999999999999999877654
No 20
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.73 E-value=9.7e-18 Score=108.91 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=57.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.++++|+.|||||||+.||+.+.|.++|.||.+ .| .+.+.+++..+++++|||+||++|+.+++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence 689999999999999999999999999988854 45 67889999999999999999999987754
No 21
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.72 E-value=3.6e-17 Score=103.56 Aligned_cols=66 Identities=26% Similarity=0.343 Sum_probs=58.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|+.|||||||+.||+.+.|.++|.|+.. .|...+.+++..+.+.+|||+|+++|..+++.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhh
Confidence 7999999999999999999999999999999854 45667788999999999999999999887654
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.72 E-value=2.4e-17 Score=104.12 Aligned_cols=66 Identities=24% Similarity=0.362 Sum_probs=59.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|+.|||||||+.+|+.+.|.+++.|+.+ .|.+.+.+++..+.+++|||+|+++|..+++.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~ 69 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQ 69 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHH
Confidence 7999999999999999999999999988889854 56677889999999999999999999887654
No 23
>KOG0079|consensus
Probab=99.72 E-value=1.2e-18 Score=108.03 Aligned_cols=64 Identities=28% Similarity=0.370 Sum_probs=58.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|.+++||+|||||+|+.||..+.|...|..|.| +| .+++.++|..++++||||+|||+|+.+.
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH
Confidence 6889999999999999999999999999988855 57 6899999999999999999999998764
No 24
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.72 E-value=2.9e-17 Score=101.62 Aligned_cols=65 Identities=26% Similarity=0.466 Sum_probs=58.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|++|||||||+.+++.+.|.+.+.|+.+ .|.+.+.+++..+.+++|||+|+++|..++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHH
Confidence 7999999999999999999999999888888854 4677788999999999999999999987754
No 25
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.71 E-value=8.9e-17 Score=102.78 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=58.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
|++++|++|||||||+.+|..+.|.+++.|+. ..|.+.+.+++..+.+.+||++|+++|..+++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccc
Confidence 89999999999999999999999999898984 456667788999999999999999999887654
No 26
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.70 E-value=7.6e-17 Score=100.80 Aligned_cols=62 Identities=73% Similarity=1.166 Sum_probs=54.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
+|++++|++|||||||+.+|+.+.|.+.+.|+.+.|.+.+.++|..+.+++||++|+++...
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~~~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDAQF 62 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCchhH
Confidence 48999999999999999999999998888777777777889999999999999999986543
No 27
>PTZ00369 Ras-like protein; Provisional
Probab=99.70 E-value=6.4e-17 Score=103.37 Aligned_cols=67 Identities=31% Similarity=0.446 Sum_probs=59.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.++|++++|++|||||||+.+++.+.|..++.||. ..|.+.+.+++..+.+++|||+|+++|..+++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~ 71 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRD 71 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHH
Confidence 34899999999999999999999999988888984 45677888999999999999999999987764
No 28
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.70 E-value=1.2e-16 Score=99.23 Aligned_cols=66 Identities=26% Similarity=0.425 Sum_probs=58.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|++|||||||+.+++.+.|.+++.|+.+ .+...+.+++..+.+++|||+|+++|..+++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHH
Confidence 7999999999999999999999999988888854 45678888999999999999999999887643
No 29
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.70 E-value=8e-17 Score=100.18 Aligned_cols=66 Identities=29% Similarity=0.485 Sum_probs=58.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
++|++++|+.|||||||+.+++.+.|.+.+.|+.+ .+.+.+.+++..+.+++|||+|+++|..+++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD 67 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHH
Confidence 37999999999999999999999999888888844 5667788899999999999999999987654
No 30
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.70 E-value=5.3e-17 Score=104.45 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=58.0
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.+|++++|+.|||||||+.+|..+.|.+++.|+.+ .| ...+.+++..+.+++||++|+++|..+++
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~ 73 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFR 73 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHH
Confidence 38999999999999999999999999888888743 45 56788899999999999999999987754
No 31
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.69 E-value=1.3e-16 Score=98.24 Aligned_cols=65 Identities=34% Similarity=0.469 Sum_probs=57.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|++|||||||+++++.+.|..++.|+.+ .|.+.+.+++..+.+++||++|+++|..++.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHH
Confidence 7999999999999999999999999888888844 4667788899889999999999999876643
No 32
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.69 E-value=5.8e-17 Score=102.21 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=57.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
|++++|+.|||||||+++++.+.|.++|.|+.+ .| .+.+.++|..+.+++|||+|+++|..+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHH
Confidence 799999999999999999999999999999943 55 57788899999999999999999877653
No 33
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.68 E-value=4.1e-16 Score=98.10 Aligned_cols=66 Identities=27% Similarity=0.387 Sum_probs=58.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|++|||||||+.+++.+.|..++.|+.. .|...+.+++..+.+++||++|+++|..+++.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccccc
Confidence 4899999999999999999999999999999854 45667889998999999999999999888754
No 34
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=4e-16 Score=102.21 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=59.3
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
...+|+++||+.|||||||+.+++.+.|..++.||.+ .+ ...+..++..+.+.+|||+|+++|..++..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 81 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG 81 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHH
Confidence 3458999999999999999999999999999999854 44 566777888899999999999999887643
No 35
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=6.5e-16 Score=97.26 Aligned_cols=67 Identities=27% Similarity=0.356 Sum_probs=58.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFL-QEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~-~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
.+|++++|++|||||||+.||+.+.|. .+|.||. ..| ...+.++|..+.+.+||++|++++..+++.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~ 73 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDA 73 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchh
Confidence 389999999999999999999999998 8899984 456 467888998899999999999999776553
No 36
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.66 E-value=6.9e-16 Score=96.74 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=57.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
.|++++|++|||||||+.+++.+.|.+.|.|+.+ .+...+.+++..+.+.+|||+|+++|..+++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 68 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhcccc
Confidence 5899999999999999999999999988888844 45567788999999999999999999876543
No 37
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=2.8e-16 Score=101.22 Aligned_cols=65 Identities=23% Similarity=0.352 Sum_probs=56.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC-CeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID-GHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~-g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|++|||||||+.+++.+.|...+.||.+ +| .+.+.++ +..+.+.+||++|+++|..+++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHH
Confidence 4899999999999999999999999988989854 45 5677888 8899999999999999987653
No 38
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.65 E-value=2.7e-16 Score=98.17 Aligned_cols=64 Identities=23% Similarity=0.440 Sum_probs=56.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|+.|||||||+.+++.+.|.+++.|+.+ ++ .+.+.+++..+.+.+||++|+++|..++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 7999999999999999999999999988888843 55 5677889999999999999999987654
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=3.8e-16 Score=97.40 Aligned_cols=64 Identities=27% Similarity=0.389 Sum_probs=56.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|++|||||||+.+++.+.|.+++.|+.+ ++ .+.+.+++..+.+++||++|+++|..++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 66 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTIT 66 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhH
Confidence 4899999999999999999999999988888854 45 5778889989999999999999987664
No 40
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.65 E-value=5.9e-16 Score=96.46 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=55.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|++|||||||+.+++.+.|.+.+.++.+ . +...+.+++..+.+++|||+|+++|..+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Confidence 4899999999999999999999999887777733 3 456778889999999999999999987764
No 41
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.65 E-value=8.9e-16 Score=96.16 Aligned_cols=64 Identities=27% Similarity=0.382 Sum_probs=56.2
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 27 v~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
++++|+.|||||||+.+++.+.|...+.|+. ..|...+.+++..+.+.+|||+|+++|..+++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchh
Confidence 5799999999999999999999998888884 456667888999999999999999999887654
No 42
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.65 E-value=2.1e-16 Score=102.76 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=55.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC-----CeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID-----GHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~-----g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|++|||||||+.+++.+.|.+++.||.+ .+ .+.+.++ ++.+.+++||++|+++|..+++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHH
Confidence 4899999999999999999999999998988854 44 4556663 5789999999999999987654
No 43
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.65 E-value=4.6e-16 Score=103.76 Aligned_cols=65 Identities=26% Similarity=0.348 Sum_probs=57.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+||+++|+.|||||||+.+|+.+.|.++|.||.++ +.+.+.+++..+.+++|||+|+++|..++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHH
Confidence 48999999999999999999999999889898554 467788999999999999999999877654
No 44
>KOG0097|consensus
Probab=99.64 E-value=7.9e-17 Score=99.56 Aligned_cols=68 Identities=24% Similarity=0.383 Sum_probs=59.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
.+|.+++|+.|||||+|+++|..+.|...-+.+.+ +| ...+++.|+.++++||||+|||+|+...+++
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsy 80 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 80 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHH
Confidence 48999999999999999999999998876666654 57 6788999999999999999999998776554
No 45
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=7.4e-16 Score=98.52 Aligned_cols=64 Identities=25% Similarity=0.410 Sum_probs=56.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
|++++|++|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+++|||+|+++|..++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 689999999999999999999999888888854 4566778899999999999999999987653
No 46
>PLN00023 GTP-binding protein; Provisional
Probab=99.64 E-value=6.7e-16 Score=106.31 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=58.2
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC-------------CeEEEEEEEecCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID-------------GHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~-------------g~~i~~~i~d~~g~~~~~~~ 87 (93)
..+||+++|+.|||||||+++++.+.|..++.||.+ .+ .+.+.++ ++.+.++||||+||++|+.+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 348999999999999999999999999988989954 44 5667765 35789999999999999988
Q ss_pred CCCC
Q psy6968 88 NPSA 91 (93)
Q Consensus 88 ~~~~ 91 (93)
++..
T Consensus 100 ~~~y 103 (334)
T PLN00023 100 RSLF 103 (334)
T ss_pred hHHh
Confidence 6543
No 47
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.64 E-value=1.8e-15 Score=94.69 Aligned_cols=66 Identities=26% Similarity=0.391 Sum_probs=58.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|++|||||||+.++..+.|..++.|+.+ .|.+.+.+++..+.+++||++|+++|..++..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 68 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMREL 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHH
Confidence 7899999999999999999999999888888854 56677888999999999999999999877653
No 48
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.64 E-value=2.6e-15 Score=94.02 Aligned_cols=66 Identities=26% Similarity=0.349 Sum_probs=57.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|+.|+|||||+.+++.+.|.+++.|+.. .+...+.+++..+.+.+||++|+++|..+++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 67 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL 67 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc
Confidence 4899999999999999999999999888888844 45667888999999999999999999877654
No 49
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.64 E-value=6.2e-16 Score=95.73 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=56.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|++|||||||+.+++.+.|.+++.|+.+ ++ .+.+.+++..+.+++|||+|+++|..++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR 66 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH
Confidence 4899999999999999999999999998888844 45 5678889999999999999999876554
No 50
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=1.7e-15 Score=94.54 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=56.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|++|||||||+++++.+.|..++.|+.+ .|...+..++..+.+++|||+|+++|..++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 7999999999999999999999999888888844 566667788888999999999999997654
No 51
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.63 E-value=1.4e-15 Score=94.29 Aligned_cols=65 Identities=32% Similarity=0.483 Sum_probs=56.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|++|||||||+.+++.+.|...+.|+.. .+.+.+.+++..+.+++|||+|+++|..++.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHH
Confidence 4899999999999999999999999888888843 4666778899999999999999999976543
No 52
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=7.6e-16 Score=97.73 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=55.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEEC-CeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVID-GHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~-g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|+.|||||||+.+++.+.|.+++.|+. ..|...+..+ +..+.+.+|||+|+++|..+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHH
Confidence 489999999999999999999999998888884 4565556665 7889999999999999877654
No 53
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=1.8e-15 Score=96.52 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=56.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.|++++|++|||||||+.+++.+.|.. +|.|+.+ .| .+.+.+++..+.+.+||++|++++..++.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSR 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhH
Confidence 489999999999999999999999975 5777743 45 56788999999999999999999877654
No 54
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.62 E-value=3e-15 Score=92.67 Aligned_cols=65 Identities=29% Similarity=0.406 Sum_probs=56.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|++|+|||||+.+++.+.|..++.|+.+ .+.....+++..+.+++|||+|++++..++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHH
Confidence 38999999999999999999999999888888844 456667889999999999999999987654
No 55
>KOG0091|consensus
Probab=99.62 E-value=5.6e-17 Score=101.98 Aligned_cols=70 Identities=24% Similarity=0.353 Sum_probs=58.5
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEE-CCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVI-DGHSHLLLIRDEGVPPELQPPNPSAP 92 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~-~g~~i~~~i~d~~g~~~~~~~~~~~~ 92 (93)
++++++++||+-||||+|+++|..+.|.+--+||.| + |..-+++ +|..|++++|||+|||+|+++..+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyy 79 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYY 79 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHh
Confidence 358999999999999999999999999988899954 3 4444444 58899999999999999999876543
No 56
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.62 E-value=1.4e-15 Score=95.07 Aligned_cols=66 Identities=27% Similarity=0.391 Sum_probs=57.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.+|++++|++|||||||+.+++.+.|.+++.++.+ ++ .+.+.+++..+.+++||++|+++|..++.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 72 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRT 72 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHH
Confidence 48999999999999999999999999887777744 44 56788999999999999999999876654
No 57
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.62 E-value=1.4e-15 Score=94.91 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=55.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|+.|||||||+.+++.+.|...+.|+.+ ++ ...+..++..+.+++||++|+++|..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 7999999999999999999999999888888855 45 4567778888999999999999887654
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.61 E-value=4e-15 Score=93.34 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=55.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|+.|||||||+.+++.+.|...+.|+.+ ++ ...+..++..+.+.+|||+|++++..++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccH
Confidence 4899999999999999999999999888888854 44 45566788889999999999999987754
No 59
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.61 E-value=3.8e-15 Score=92.25 Aligned_cols=62 Identities=31% Similarity=0.506 Sum_probs=55.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
|++++|+.|||||||+.+|..+.|.+++.|+.+ + +...+.+++..+.+++||++|+++|..+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999853 4 4788899999999999999999987543
No 60
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.61 E-value=6.2e-15 Score=95.85 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=58.4
Q ss_pred CCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 21 DVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
....+|++++|++|||||||+++++.+.|..+|.||.+ ++ ...+..++..+.+++||++|+++|..++.
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~ 76 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRD 76 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 34558999999999999999999999999988989854 34 45666788899999999999999876653
No 61
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.61 E-value=3.2e-15 Score=93.44 Aligned_cols=65 Identities=25% Similarity=0.339 Sum_probs=57.0
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|++|||||||+.++..+.|.++|.|+.+ .+ ...+.+++..+.+++||++|++++..++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 48999999999999999999999999999888854 45 4677889989999999999999887654
No 62
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.61 E-value=4.3e-15 Score=95.72 Aligned_cols=65 Identities=28% Similarity=0.350 Sum_probs=56.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|+.|||||||+.+++.+.|...+.||.+ .+ ...+.+++..+.+.+||++|+++|..++
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH
Confidence 48999999999999999999999999888888854 45 5677888988999999999999987654
No 63
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=2.7e-15 Score=95.57 Aligned_cols=64 Identities=28% Similarity=0.417 Sum_probs=55.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|+.|||||||+++++.+.|...+.|+.+ ++ .+.+.+++..+.+++||++|+++|..++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 4899999999999999999999999887888844 45 5678889999999999999999887554
No 64
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.60 E-value=5.7e-15 Score=91.96 Aligned_cols=64 Identities=23% Similarity=0.389 Sum_probs=55.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|++|||||||+.+++.+.|...+.|+.+ .+ .+.+.+++..+.+++||++|+++|..++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH
Confidence 7999999999999999999999999888878744 45 5678888999999999999999987653
No 65
>KOG0088|consensus
Probab=99.59 E-value=4.4e-16 Score=97.63 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=62.5
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-ccee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP 92 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~ 92 (93)
...+|++++|+.-||||+|+.||+.+.|...+..| ...| .+.+.+.++...+.||||+|||+|..+.|.+|
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY 83 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY 83 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE
Confidence 34599999999999999999999999999888777 4556 67888989999999999999999999987654
No 66
>KOG0395|consensus
Probab=99.59 E-value=1.7e-15 Score=98.09 Aligned_cols=66 Identities=29% Similarity=0.528 Sum_probs=61.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..|++++|..|||||+|+.+|+++.|.++|+|| ++.|.+.+.+++..+.++|+||+||++|..|+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHH
Confidence 489999999999999999999999999999999 456889999999999999999999999987754
No 67
>PLN03110 Rab GTPase; Provisional
Probab=99.59 E-value=5.7e-15 Score=96.46 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=57.0
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|+.|||||||+.+++.+.|..++.|+.+ ++ .+.+.+++..+.+++||++|+++|..++
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 38999999999999999999999999888888844 55 6788899999999999999999987654
No 68
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.58 E-value=1.9e-15 Score=97.93 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=56.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
+|++++|+.|||||||++++..+.|.+.+.|+.+ .+ ......++..+++.+|||+||++|+.+++.+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y 74 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEY 74 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999844 45 3455555558999999999999997776543
No 69
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=5.7e-15 Score=91.97 Aligned_cols=65 Identities=25% Similarity=0.420 Sum_probs=55.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|+.|+|||||+.++..+.|.+++.++.+ ++ .+.+.+++..+.+.+||++|+++|..++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 38999999999999999999999999888877744 44 5678889988999999999999886543
No 70
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.58 E-value=5.5e-15 Score=91.43 Aligned_cols=64 Identities=23% Similarity=0.461 Sum_probs=54.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC--CeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID--GHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~--g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|++|+|||||+.+++.+.|.+.+.|+.+ +| ...+.++ +..+.+.+||++|+++|..++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH
Confidence 4899999999999999999999999888888843 55 5667777 778999999999999887654
No 71
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.57 E-value=1.4e-14 Score=90.94 Aligned_cols=61 Identities=25% Similarity=0.453 Sum_probs=54.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
.|++++|++|||||||+.+++.+.|+..+.++.+ .+ .+.+.+++..+.+.+||++|+++|.
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 7999999999999999999999999888888743 44 5678889999999999999999885
No 72
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.57 E-value=6.1e-15 Score=92.89 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=53.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC----------CeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID----------GHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~----------g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|++|||||||+.+++.+.|.+++.|+.+ ++ ...+.++ +..+.+++||++||++|..++
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 48999999999999999999999999998888844 44 4445543 457899999999999886543
No 73
>KOG0093|consensus
Probab=99.57 E-value=3.1e-15 Score=92.78 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=57.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|++++|++.+|||+++.||+.+.|...+..|.| .| .+++.-..+.+++++|||+|||+|+.+..+
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTa 89 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTA 89 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHH
Confidence 7999999999999999999999999888888855 57 466666778899999999999999876543
No 74
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.57 E-value=5.8e-15 Score=96.19 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=55.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECC-eEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDG-HSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g-~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|++|||||||+.+|+.+.|...|.||.+ + +.+.+.+++ ..+.+++||++|++.+..+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999999999999999954 4 467788865 579999999999998776543
No 75
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=9.1e-15 Score=95.26 Aligned_cols=65 Identities=28% Similarity=0.461 Sum_probs=55.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEE-CCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVI-DGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~-~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|+.|||||||+.+++.+.|...+.|+.+ ++ .+.+.+ ++..+.+++||++|+++|..++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHH
Confidence 48999999999999999999999999888888844 44 566766 4678999999999999987654
No 76
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.56 E-value=1.5e-14 Score=89.48 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=55.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|+.+||||||+++++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 7999999999999999999999998887777744 45 6788899999999999999999886543
No 77
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.56 E-value=6.7e-15 Score=95.47 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=53.7
Q ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 30 VGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 30 vG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
||+.|||||||+.||+.+.|..+|.||.+ .+ .+.+.+++..+++.+|||+|+++|..+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~ 63 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDG 63 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHH
Confidence 69999999999999999999988999954 45 677888999999999999999999887653
No 78
>PLN03108 Rab family protein; Provisional
Probab=99.55 E-value=1.6e-14 Score=93.98 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=56.3
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|++|||||||+.+++.+.|...+.|+.+ ++ .+.+.+++..+.+.+|||+|+++|..++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 48999999999999999999999989887888743 45 5678899999999999999999887654
No 79
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.55 E-value=1.5e-14 Score=89.53 Aligned_cols=64 Identities=28% Similarity=0.471 Sum_probs=54.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|++|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+++||++|+++|..++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH
Confidence 4899999999999999999999998887777743 44 5677888888999999999999886543
No 80
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.55 E-value=2.9e-14 Score=88.78 Aligned_cols=59 Identities=34% Similarity=0.528 Sum_probs=51.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
|++++|++|||||||+.+++.+.|..+|.|+. ..+...+.++++.+.+++||++|++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQA 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCccc
Confidence 68999999999999999999999988888884 346667788999999999999999863
No 81
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.55 E-value=1.7e-14 Score=89.67 Aligned_cols=66 Identities=23% Similarity=0.372 Sum_probs=56.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.+|++++|+++||||||+.+++.+.|..++.|+.+ ++ ...+.+++..+.+.+||++|++++..+++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 70 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITS 70 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHH
Confidence 37999999999999999999999999888888854 45 67788889889999999999998876543
No 82
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=6e-14 Score=87.31 Aligned_cols=65 Identities=28% Similarity=0.425 Sum_probs=55.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|++|||||||+++++.+.+...+.|+. ..+...+..++..+.+++||++|++++..++.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccch
Confidence 489999999999999999999999877777774 34566677889999999999999998866544
No 83
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.55 E-value=4.2e-14 Score=91.44 Aligned_cols=61 Identities=28% Similarity=0.456 Sum_probs=52.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
+|++++|++|||||||+.+++.+.|...+.|+.+ + +...+.++|+.+.+++|||+|++++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~ 63 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP 63 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC
Confidence 4899999999999999999999999988888843 3 45677889999999999999987664
No 84
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.55 E-value=2.2e-14 Score=91.76 Aligned_cols=64 Identities=30% Similarity=0.454 Sum_probs=53.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|+.|||||||+.+++.+.|.. ++.++.+ .+ ...+.+++..+.+.+|||+|+++|..++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh
Confidence 489999999999999999999999864 5667743 45 4567889999999999999999887654
No 85
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.54 E-value=6.1e-14 Score=89.45 Aligned_cols=65 Identities=29% Similarity=0.429 Sum_probs=55.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.|++++|++|||||||+.++..+.|.+++.++. ..+...+.+++..+.+.+||++|++++..+++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccch
Confidence 689999999999999999999899888887773 44556778889889999999999999876553
No 86
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.54 E-value=3.1e-14 Score=89.11 Aligned_cols=65 Identities=25% Similarity=0.338 Sum_probs=55.5
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|++|||||||+++++.+.+...+.++.+ ++ ...+.+++..+.+.+||++|+++|..++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 37999999999999999999999998888777743 44 5667888989999999999999887654
No 87
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=2.8e-14 Score=89.18 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=51.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.|++++|+.|||||||+.+++.+.|..++.++...+.....+++..+.+.+|||+|++++...
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 63 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRAN 63 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHH
Confidence 389999999999999999999999987765554445445567788899999999999887543
No 88
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=7.8e-14 Score=90.08 Aligned_cols=59 Identities=25% Similarity=0.293 Sum_probs=46.5
Q ss_pred eeEEEECCCCCCHHHHHH-HHHhCC-----CCCCCCCCcc---eeEEE--------EEECCeEEEEEEEecCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVH-RFMTGA-----FLQEESPEGG---RFKKE--------VVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~-r~~~~~-----f~~~~~~t~~---~~~~~--------~~~~g~~i~~~i~d~~g~~~ 83 (93)
+|++++|+.|||||||+. ++..+. |.++|.||.+ .|... +.++|+.+.+++|||+||++
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~ 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh
Confidence 799999999999999996 565543 5567788852 34332 26799999999999999986
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.52 E-value=5.1e-14 Score=87.72 Aligned_cols=64 Identities=27% Similarity=0.404 Sum_probs=54.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|++|||||||+++++++.+...+.++.+ .+ .+.+.+++..+.+.+||++|++.|..++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH
Confidence 4899999999999999999999998887777743 44 5678889999999999999998887554
No 90
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.52 E-value=4e-14 Score=91.08 Aligned_cols=64 Identities=27% Similarity=0.306 Sum_probs=55.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
|++++|+.|||||||+.+++.+.|..++.++.. .+...+.+++..+.+++||++|+++|..++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHH
Confidence 689999999999999999999999888888843 3456788889889999999999999876643
No 91
>KOG0083|consensus
Probab=99.52 E-value=5.2e-16 Score=95.06 Aligned_cols=63 Identities=27% Similarity=0.387 Sum_probs=53.3
Q ss_pred EECCCCCCHHHHHHHHHhCCCCCC-CCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 29 lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
++|++++|||+|+.||-.+.|... ..+|.+ +| .+.+..+++.+++++|||+|||+|++...++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ay 67 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAY 67 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhh
Confidence 689999999999999999988764 445544 67 5788899999999999999999999886554
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.52 E-value=6.6e-14 Score=86.40 Aligned_cols=64 Identities=30% Similarity=0.465 Sum_probs=55.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|++|||||||+.+++.+.|...+.++.+ .+.+...+++..+.+.+||++|++++..++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHH
Confidence 4899999999999999999999999888888743 466677889999999999999999886654
No 93
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.51 E-value=5.7e-14 Score=86.77 Aligned_cols=64 Identities=20% Similarity=0.344 Sum_probs=54.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.|++++|+++||||||+++++.+.+...+.|+.+ ++ .+.+.+++..+.+.+||++|++++..+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~ 66 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999999998877777744 34 6778888888999999999999886543
No 94
>KOG0081|consensus
Probab=99.50 E-value=4.1e-16 Score=97.83 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=54.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC---------CeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID---------GHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~---------g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|.+.+||+|||||+++++|..+.|......|.+ +| .+.+.++ +..|.+++|||+|||+|+++..
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 6889999999999999999999999888777744 56 4555542 4579999999999999998753
No 95
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.50 E-value=3.9e-14 Score=88.77 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 27 v~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
++++|+.|||||||+.+++.+.|..++.||.+.. .+.+++..+++.+||++|+++|+.+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~~~~~ 62 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLRKYWK 62 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEeeCCeEEEEEECCCCcchhHHHH
Confidence 7899999999999999999998888888985532 234566678999999999999977653
No 96
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.49 E-value=5.3e-14 Score=87.22 Aligned_cols=63 Identities=32% Similarity=0.391 Sum_probs=51.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC--CCCCCCCCCcc-ee-EEEEEEC-CeEEEEEEEecCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG--AFLQEESPEGG-RF-KKEVVID-GHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~--~f~~~~~~t~~-~~-~~~~~~~-g~~i~~~i~d~~g~~~~~~~ 87 (93)
+|++++|++|||||||+.++..+ .|.+++.|+.+ ++ .+.+.++ +..+.+.+||++|++++..+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHH
Confidence 48999999999999999998865 68888888854 44 5566665 57899999999999887654
No 97
>PLN03118 Rab family protein; Provisional
Probab=99.49 E-value=1.6e-13 Score=88.99 Aligned_cols=64 Identities=22% Similarity=0.402 Sum_probs=53.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|+.|||||||+.+++.+.+. ++.|+.+ .+ ...+.+++..+.+.+|||+|+++|..++
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 79 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT 79 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 489999999999999999999988874 4667744 44 5677888888999999999999987654
No 98
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.49 E-value=2.3e-13 Score=84.15 Aligned_cols=64 Identities=27% Similarity=0.417 Sum_probs=54.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|+.+||||||+++++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 4899999999999999999999988777777743 45 4567788888999999999999887654
No 99
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.49 E-value=2.2e-13 Score=89.36 Aligned_cols=58 Identities=26% Similarity=0.480 Sum_probs=51.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFL-QEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~-~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
+||+++|++|||||||+.+|+.+.|. ..+.|+.+ + +.+.+.+++..+.+.+||++|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 48999999999999999999999887 66777753 3 57788999999999999999998
No 100
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.48 E-value=1.4e-13 Score=84.96 Aligned_cols=63 Identities=27% Similarity=0.461 Sum_probs=52.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
+|++++|++|||||||+.+++.+.+...+.++.+ ++ ...+.+++..+.+.+||++|++++..+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 65 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 4899999999999999999999888777767733 44 567788898899999999999887654
No 101
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.47 E-value=2e-13 Score=86.09 Aligned_cols=64 Identities=27% Similarity=0.362 Sum_probs=54.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.|++++|++|||||||+.++..+.+...+.|+.. .+...+.+++..+.+++||++|+++|..++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHH
Confidence 6899999999999999999999998887888743 456677888888999999999999886543
No 102
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.46 E-value=2.4e-13 Score=83.61 Aligned_cols=65 Identities=25% Similarity=0.393 Sum_probs=53.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|+.|+|||||+++++.+.+...+.++. ..+ ...+.+.+..+.+.+||++|++++..+++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhH
Confidence 489999999999999999999998877666663 334 56677788889999999999998876654
No 103
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=6.6e-13 Score=82.64 Aligned_cols=64 Identities=28% Similarity=0.420 Sum_probs=53.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
..|++++|++|||||||+.+++.+.+.+.+.++.+ .+ ...+.+++..+.+.+||++|+++|..+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 48999999999999999999998888777767643 33 567788999999999999999887654
No 104
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.43 E-value=4.5e-13 Score=88.12 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=48.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|+.|||||||+.+++.+.|.+ +.||.+ .+.. ..+ ..+.+.+|||+|+++|..++.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~-~~~--~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL-KQW--GPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE-EEe--eEEEEEEEeCCCcccchhhHH
Confidence 489999999999999999999999975 467743 3321 112 467899999999999987654
No 105
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.43 E-value=1.4e-13 Score=86.66 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=48.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..+|++++|+.|||||||++++..+.|.. +.||.+.....+.. ..+.+++||++|+++++.++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~ 70 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTY--KNVKFNVWDVGGQDKIRPLW 70 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceEEEEE--CCEEEEEEECCCCHHHHHHH
Confidence 34899999999999999999998888764 56775432223333 45889999999999986653
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.42 E-value=2e-13 Score=86.98 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=48.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+.|++++|+.+||||||+.++..+.|.. +.||.+.....+.. ..+.+++||++||++++.++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~~~~~--~~~~~~i~D~~Gq~~~~~~~ 78 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--KNISFTVWDVGGQDKIRPLW 78 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEEEEEE--CCEEEEEEECCCCHHHHHHH
Confidence 34899999999999999999998888864 66775532223333 45889999999999987654
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.42 E-value=1.6e-13 Score=85.58 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=47.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+|++++|+.+||||||+.++..+.|.. +.||.+.-...+.. ..+.+.+||++|+++|..++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~~~~~--~~~~~~l~D~~G~~~~~~~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--KNISFTVWDVGGQDKIRPLW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceEEEEE--CCEEEEEEECCCCHhHHHHH
Confidence 489999999999999999998888874 67775421223333 45889999999999886553
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.42 E-value=2.1e-13 Score=86.88 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=48.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
..+|++++|+.|||||||+.++..+.|.. +.||.+.....+.. ..+.+++||++|+++++.+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEY--KNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEE--CCEEEEEEECCCCHhHHHH
Confidence 34899999999999999999998888875 56775432223333 4588999999999988754
No 109
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.42 E-value=5.9e-13 Score=84.17 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=48.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..|++++|++|||||||+.++..+.|.. +.||.+.....+.. ..+.+.+||++|++++..++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~~~~~--~~~~l~l~D~~G~~~~~~~~ 74 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVETVTY--KNISFTVWDVGGQDKIRPLW 74 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceEEEEE--CCEEEEEEECCCChhhHHHH
Confidence 4899999999999999999998888854 66775432223344 35889999999999987653
No 110
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.41 E-value=5.2e-13 Score=84.98 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=49.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEE-CCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVI-DGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~-~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.+|++++|+.|||||||+.+++.+.|..+ .||.+ . +...+.+ ++..+.+.+|||+|++++..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH
Confidence 38999999999999999999999888765 56643 2 2334444 456789999999999988654
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.41 E-value=6.9e-13 Score=81.41 Aligned_cols=62 Identities=29% Similarity=0.495 Sum_probs=52.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
|++++|+.|||||||+.+++.+.+...+.|+.. .+......++..+.+++||+.|++++..+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 689999999999999999999888888888844 34667778888899999999998876543
No 112
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.38 E-value=3.7e-12 Score=77.05 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=51.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
+|++++|..|+|||||+.+++.+.++.++.++. ..+ ...+..++..+.+.+||+.|++++..+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 66 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI 66 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH
Confidence 799999999999999999999988777776663 234 445677887789999999999888544
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.36 E-value=4.2e-12 Score=77.26 Aligned_cols=62 Identities=27% Similarity=0.487 Sum_probs=51.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
+|++++|++++|||||+.++..+.+...+.++.+ .+ ...+..++..+.+.+||++|++++..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS 64 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH
Confidence 4799999999999999999999998887667743 34 56777788889999999999887643
No 114
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.35 E-value=4.7e-12 Score=79.44 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=46.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
|++++|+.+||||||+.++..+.|.. +.||.+.-...+.. ..+.+.+||++|++++..++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~~~--~~~~i~l~Dt~G~~~~~~~~ 60 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETVEY--KNLKFTIWDVGGKHKLRPLW 60 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEEEE--CCEEEEEEECCCChhcchHH
Confidence 68999999999999999999987764 67775422123333 45788999999999886543
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.34 E-value=2.3e-12 Score=80.99 Aligned_cols=61 Identities=26% Similarity=0.368 Sum_probs=47.0
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
..+++++|++|||||||+.++..+.+ ..+.|+.+.....+.+++ +.+.+||++|+++++.+
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~--~~l~l~D~~G~~~~~~~ 74 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEG--YKLNIWDVGGQKTLRPY 74 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECC--EEEEEEECCCCHHHHHH
Confidence 47999999999999999999887754 456677553244556654 77899999999987654
No 116
>KOG1673|consensus
Probab=99.33 E-value=7.8e-13 Score=82.83 Aligned_cols=72 Identities=26% Similarity=0.420 Sum_probs=62.5
Q ss_pred CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
++.-..|+.++||+..|||||+.+|.++.+.+++..+.| ++ .+++.+.|.++.+.|||..||++|.++.|.+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia 89 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA 89 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence 344458999999999999999999999999887777744 56 7899999999999999999999999887743
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.31 E-value=1.9e-12 Score=81.26 Aligned_cols=60 Identities=22% Similarity=0.179 Sum_probs=46.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+++++|++|||||||+.++..+ |..++.||.+.....+..+ .+.+.+||++|+++++.++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~--~~~~~i~D~~G~~~~~~~~ 60 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLD--KYEVCIFDLGGGANFRGIW 60 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEEC--CEEEEEEECCCcHHHHHHH
Confidence 4799999999999999877755 7777888855333344454 4788999999998876553
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.30 E-value=4.7e-12 Score=78.10 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=45.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGA-FLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+++++|++|||||||+.++..+. +...+.|+.+.....+. ...+.+.+||++|++++..++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~ 62 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE--KGNLSFTAFDMSGQGKYRGLW 62 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE--ECCEEEEEEECCCCHhhHHHH
Confidence 47899999999999999998875 45567787542122222 345788999999999886553
No 119
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.29 E-value=1.6e-11 Score=74.85 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=46.2
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 27 v~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
++++|++|||||||++++....|..++.|+.+.-...+..++ +.+.+||++|++++..+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~ 60 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGN--VTLKVWDLGGQPRFRSM 60 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECC--EEEEEEECCCCHhHHHH
Confidence 789999999999999999999898888888542112334433 78999999999887643
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.28 E-value=1.5e-11 Score=78.19 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=46.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
..|++++|++|||||||++++..+.+. .+.|+.+.....+.+++ +.+.+||++|++++..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~--~~~~l~D~~G~~~~~~ 78 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGN--IKFKTFDLGGHEQARR 78 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECC--EEEEEEECCCCHHHHH
Confidence 379999999999999999999887764 46677443334566765 5778999999987754
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.28 E-value=8.7e-12 Score=78.62 Aligned_cols=62 Identities=26% Similarity=0.400 Sum_probs=47.5
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..|++++|++|+|||||+.++..+.|.. +.|+.+.....+.++ .+.+.+||++|++++..++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYK--NIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEEC--CeEEEEEECCCCHHHHHHH
Confidence 3899999999999999999999988875 456644222234444 4789999999999886543
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.26 E-value=1.3e-11 Score=76.10 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=45.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
+++++|++|||||||+.++..+.+... .|+.+.....+..+ ..+.+.+||++|++++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~ 60 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVEMLQLE-KHLSLTVWDVGGQEKMRTV 60 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceEEEEeC-CceEEEEEECCCCHhHHHH
Confidence 589999999999999999999887654 56644212334443 4578999999999887654
No 123
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.25 E-value=3.5e-11 Score=71.16 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=44.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-ccee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
||+|+|+.|||||||+.+++.+.+.. .+.+. ...+ .....++.....+.+||++|++.+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc
Confidence 78999999999999999999988761 12222 2233 345667777777999999999877553
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.23 E-value=2.3e-11 Score=75.53 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=41.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC------CCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGA------FLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~------f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
+++++|+.|||||||+.++.... +..++.|+.+.....+.+++ ..+.+||++|++++..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~ 66 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN--ARLKFWDLGGQESLRSL 66 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC--EEEEEEECCCChhhHHH
Confidence 58999999999999998876532 22334555332223455553 68889999999987654
No 125
>KOG4252|consensus
Probab=99.23 E-value=9.2e-14 Score=88.78 Aligned_cols=65 Identities=20% Similarity=0.363 Sum_probs=56.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+|++++|..+|||+|++.||+.|.|...|.-+.+ +| ...+.+++..+.+.+||++|||+|..+..
T Consensus 21 iK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItk 87 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITK 87 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHH
Confidence 8999999999999999999999999988888754 45 45677888888899999999999987643
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.22 E-value=1.3e-11 Score=78.61 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=45.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
..+++++|++|||||||++++..+.+.. +.|+.+.....+.+++ +++.+||++|++++..+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~ 77 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIGN--IKFTTFDLGGHQQARRL 77 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceEEEEECC--EEEEEEECCCCHHHHHH
Confidence 3899999999999999999999887653 4566432222444544 67889999999877544
No 127
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.22 E-value=8.5e-12 Score=77.20 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=44.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
|++++|+++||||||++++..+.+.. +.|+.+.....+.. ..+.+++||++|+++|..++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~ 60 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVETVTY--KNLKFQVWDLGGQTSIRPYW 60 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEEEEE--CCEEEEEEECCCCHHHHHHH
Confidence 68999999999999999998877764 45664321223333 45789999999999886543
No 128
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.22 E-value=3.1e-11 Score=74.45 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=44.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
|++++|+.|||||||+.+++.+.+ .++.++.+.....+.++ .+.+.+||++|++++..++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~ 60 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYK--NVSFTVWDVGGQDKIRPLW 60 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEEC--CEEEEEEECCCChhhHHHH
Confidence 689999999999999999998874 34556644222334454 4789999999999876543
No 129
>KOG0096|consensus
Probab=99.21 E-value=2.9e-11 Score=77.67 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=54.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEE-CCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVI-DGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~-~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..+|++++|+.|.|||+++.|++++.|...|.||.+. ..+.+-. |...|++..|||+|||.+..++.-
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdg 78 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDG 78 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccc
Confidence 3589999999999999999999999999999999653 2222222 223699999999999999776543
No 130
>KOG0070|consensus
Probab=99.16 E-value=3e-11 Score=76.92 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=55.8
Q ss_pred CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
.+..+.+|+++|-.++||||+++++-.+.+... .||.|.-..++.+. .+++.+||..||++++.+++.+
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk--n~~f~vWDvGGq~k~R~lW~~Y 81 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK--NISFTVWDVGGQEKLRPLWKHY 81 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc--ceEEEEEecCCCcccccchhhh
Confidence 455679999999999999999999988887765 68866433455664 6899999999999999886654
No 131
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.15 E-value=3.3e-11 Score=76.45 Aligned_cols=66 Identities=27% Similarity=0.352 Sum_probs=51.2
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..+.+++++|..|+||||+++++..+.+.+ +.||.+.....+.+++ +.+.+||.+|++.++.+++.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~ 77 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIEEIKYKG--YSLTIWDLGGQESFRPLWKS 77 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEEEEEETT--EEEEEEEESSSGGGGGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccceeeeCc--EEEEEEecccccccccccee
Confidence 456999999999999999998887765543 5677664445667766 56789999999988777653
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.13 E-value=2.7e-10 Score=71.15 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=44.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
..+++++|++|||||||+.++....+. .+.|+.+.....+..++ ..+.+||++|++++.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~--~~~~~~D~~G~~~~~ 72 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDG--FKLNVWDIGGQRAIR 72 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECC--EEEEEEECCCCHHHH
Confidence 489999999999999999877766553 35666553234556665 567899999988764
No 133
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.12 E-value=1.7e-10 Score=74.88 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=44.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEE-EEEECCeEEEEEEEecCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKK-EVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~-~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
.++++|++|||||+|+.++..+.+...+.++...+.. .....+....+.+||++|+++++.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~ 63 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRD 63 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHH
Confidence 5899999999999999999999887766544322211 111124457889999999998754
No 134
>KOG0073|consensus
Probab=99.10 E-value=1.6e-10 Score=72.76 Aligned_cols=65 Identities=26% Similarity=0.270 Sum_probs=52.0
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
+++++++|..++||||+++++.... .+...|+.+.-.+++.+++ .++++||..||...++.++.+
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nY 80 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNY 80 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEecc--eEEEEEEcCCcchhHHHHHHh
Confidence 5899999999999999998877654 5557788764467777755 788999999999988776543
No 135
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.08 E-value=3.5e-10 Score=75.31 Aligned_cols=52 Identities=29% Similarity=0.561 Sum_probs=45.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..+.+||++|||||||+ |.+.|. ..|+.| ++.++|.++
T Consensus 16 ~~vl~~i~L~v~~G---EfvsilGpSGcGKSTLL-riiAGL----~~p~~G----~V~~~g~~v 67 (248)
T COG1116 16 VEVLEDINLSVEKG---EFVAILGPSGCGKSTLL-RLIAGL----EKPTSG----EVLLDGRPV 67 (248)
T ss_pred eEEeccceeEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCccc
Confidence 45689999999999 99999999999999999 999998 577877 677777654
No 136
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.07 E-value=3e-10 Score=72.74 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=45.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHh--CCCCCCCC------------CCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT--GAFLQEES------------PEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~--~~f~~~~~------------~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
-+++++|+.+||||||+.+++. +.|...+. ++.+ .+ .+...++...+.+.+|||+|+++|..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 4799999999999999999997 66655431 1111 11 233445556678999999999988543
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.07 E-value=2.8e-10 Score=70.08 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=39.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh---CCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMT---GAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~---~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
.++++|+++||||||+.++.. +.+..++.+. .+.-...+.+++ ...+.+|||+|+++|.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~ 65 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFI 65 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHH
Confidence 578999999999999999885 3444333332 111112344442 3578999999998874
No 138
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.06 E-value=4.6e-10 Score=77.90 Aligned_cols=50 Identities=28% Similarity=0.554 Sum_probs=45.5
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.++++++.+..| ..++++||+||||||++ |.+.|. ..|+.| ++.++|+.+
T Consensus 18 ~l~~i~l~i~~G---ef~vllGPSGcGKSTlL-r~IAGL----e~~~~G----~I~i~g~~v 67 (338)
T COG3839 18 VLKDVNLDIEDG---EFVVLLGPSGCGKSTLL-RMIAGL----EEPTSG----EILIDGRDV 67 (338)
T ss_pred eeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence 688999999999 99999999999999999 999998 678888 788888766
No 139
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.05 E-value=5.4e-10 Score=77.93 Aligned_cols=52 Identities=27% Similarity=0.519 Sum_probs=46.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...+.++++++.+| ..+.++|++||||||++ |.+.|. ..|+.| ++.++|+.+
T Consensus 18 ~~av~~isl~i~~G---ef~~lLGPSGcGKTTlL-R~IAGf----e~p~~G----~I~l~G~~i 69 (352)
T COG3842 18 FTAVDDISLDIKKG---EFVTLLGPSGCGKTTLL-RMIAGF----EQPSSG----EILLDGEDI 69 (352)
T ss_pred eeEEecceeeecCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence 34579999999999 99999999999999999 999998 678888 788888765
No 140
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.05 E-value=2.1e-09 Score=72.88 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=46.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCC----------CCCCcc--eeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQE----------ESPEGG--RFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~----------~~~t~~--~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
.++++++|++|+|||||+++++...+... +.++.. .+...+..+|..+++.+|||+|...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 48999999999999999999998776543 223321 23445667888899999999996544
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.04 E-value=3.8e-10 Score=72.41 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=38.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~ 81 (93)
..+++++|++|||||||++++.++.+...+.|........+.++ .+.+|||+|.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG----DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec----ceEEEeCCcc
Confidence 37999999999999999999988776554444322112223332 5789999993
No 142
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.04 E-value=1.6e-09 Score=67.21 Aligned_cols=56 Identities=18% Similarity=0.039 Sum_probs=37.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-CcceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQE-ESP-EGGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~-t~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
+++++|++|||||||++++..+.+... +.. +.+.....+.. ..+.+.+|||+|++.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCC
Confidence 689999999999999999998876432 211 12211112222 347899999999853
No 143
>PRK15494 era GTPase Era; Provisional
Probab=99.03 E-value=1.5e-09 Score=75.45 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=42.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCC---CCCCCcceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQ---EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~---~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
..+++++|+++||||||++++++..+.. ...+|.+.....+..++. ++.+|||+|+.+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~ 112 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFE 112 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCC
Confidence 3599999999999999999999877642 222333333445666664 568999999853
No 144
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.02 E-value=1.1e-09 Score=68.72 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=42.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhC-------CCCCCCCCCc------c-ee-EEEEE--E---CCeEEEEEEEecCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTG-------AFLQEESPEG------G-RF-KKEVV--I---DGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~-------~f~~~~~~t~------~-~~-~~~~~--~---~g~~i~~~i~d~~g~~~~~ 85 (93)
.++++|+.+||||||+.+++.. .+...+.++. + .+ .+.+. + ++..+.+.+|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 5899999999999999999873 1222333321 1 12 12222 2 6778899999999999886
Q ss_pred CC
Q psy6968 86 PP 87 (93)
Q Consensus 86 ~~ 87 (93)
.+
T Consensus 82 ~~ 83 (179)
T cd01890 82 YE 83 (179)
T ss_pred HH
Confidence 43
No 145
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.00 E-value=1.4e-09 Score=71.52 Aligned_cols=52 Identities=27% Similarity=0.552 Sum_probs=45.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ |.+++. ..|+.| .+.++|..+
T Consensus 15 ~~VLkgi~l~v~~G---evv~iiGpSGSGKSTlL-RclN~L----E~~~~G----~I~i~g~~~ 66 (240)
T COG1126 15 KEVLKGISLSVEKG---EVVVIIGPSGSGKSTLL-RCLNGL----EEPDSG----SITVDGEDV 66 (240)
T ss_pred eEEecCcceeEcCC---CEEEEECCCCCCHHHHH-HHHHCC----cCCCCc----eEEECCEec
Confidence 45689999999999 99999999999999999 999987 567778 788888654
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.00 E-value=5.2e-10 Score=69.28 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=42.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-ccee-EEEEEEC-CeEEEEEEEecCCCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRF-KKEVVID-GHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~-~~~~~~~-g~~i~~~i~d~~g~~~~~~~ 87 (93)
.++++|+.++|||||+++++.+.+...+.++ ...+ ...+..+ +....+.+|||+|++.|..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM 66 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH
Confidence 4899999999999999999988876543332 1111 1233333 23567889999999877543
No 147
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.98 E-value=1.6e-09 Score=72.79 Aligned_cols=53 Identities=30% Similarity=0.619 Sum_probs=43.6
Q ss_pred CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+.++++.++++.+| .-++++|+||||||||+ +.+.+.. .|..| ++.++|+.+
T Consensus 14 ~~~il~~ls~~i~~G---~i~~iiGpNG~GKSTLL-k~l~g~l----~p~~G----~V~l~g~~i 66 (258)
T COG1120 14 GKPILDDLSFSIPKG---EITGILGPNGSGKSTLL-KCLAGLL----KPKSG----EVLLDGKDI 66 (258)
T ss_pred CeeEEecceEEecCC---cEEEEECCCCCCHHHHH-HHHhccC----CCCCC----EEEECCCch
Confidence 366789999999999 99999999999999999 7777763 56666 677777644
No 148
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.98 E-value=2.3e-09 Score=65.68 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=40.7
Q ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 29 IVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 29 lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
++|+.|||||||+.++++..+.....|. .......+.+++ ..+.+|||+|++++..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 59 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPY 59 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCC
Confidence 5899999999999998877544332232 222345667776 46789999999887653
No 149
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.97 E-value=3.5e-09 Score=75.95 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=44.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA--FLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
++++++|+++||||||+++++... +...++.+. +.+...+.++|.. +.+|||+|+.++.
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~ 265 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHA 265 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccch
Confidence 899999999999999999998754 344454443 3335677788754 5799999987653
No 150
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.96 E-value=2.6e-09 Score=69.56 Aligned_cols=52 Identities=29% Similarity=0.494 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 17 ~~il~~~s~~i~~G---~~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~~ 68 (218)
T cd03255 17 VQALKGVSLSIEKG---EFVAIVGPSGSGKSTLL-NILGGL----DRPTSG----EVRVDGTDI 68 (218)
T ss_pred eeEEeeeEEEEcCC---CEEEEEcCCCCCHHHHH-HHHhCC----cCCCce----eEEECCEeh
Confidence 45799999999999 99999999999999999 778776 456667 566766543
No 151
>KOG4423|consensus
Probab=98.95 E-value=1.6e-12 Score=83.35 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=56.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeE-EEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHS-HLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~-i~~~i~d~~g~~~~~~~~~~ 90 (93)
+|+.++|+.|+|||+++.||+...|...|..+.+ .| .+...+|++. +++++||.+|||+|.+|..-
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrV 94 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRV 94 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEE
Confidence 7999999999999999999999999988888855 45 4566677764 69999999999999998643
No 152
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.95 E-value=3.2e-09 Score=67.92 Aligned_cols=52 Identities=29% Similarity=0.513 Sum_probs=43.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| .+.++|..+
T Consensus 5 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~ 56 (190)
T TIGR01166 5 PEVLKGLNFAAERG---EVLALLGANGAGKSTLL-LHLNGL----LRPQSG----AVLIDGEPL 56 (190)
T ss_pred cceecceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----eEEECCEEc
Confidence 45789999999999 99999999999999999 888876 456677 667777654
No 153
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.95 E-value=2.6e-09 Score=71.91 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=47.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL 72 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~ 72 (93)
...++++++++..+ ..++++|++||||||++ +++++. ..|+.| ++.++|+++.
T Consensus 14 ~~av~~v~l~I~~g---ef~vliGpSGsGKTTtL-kMINrL----iept~G----~I~i~g~~i~ 66 (309)
T COG1125 14 KKAVDDVNLTIEEG---EFLVLIGPSGSGKTTTL-KMINRL----IEPTSG----EILIDGEDIS 66 (309)
T ss_pred ceeeeeeeEEecCC---eEEEEECCCCCcHHHHH-HHHhcc----cCCCCc----eEEECCeecc
Confidence 56689999999999 99999999999999999 999988 578888 7888987663
No 154
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.93 E-value=4.4e-09 Score=68.24 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=43.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 14 ~~~l~~~sl~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~i 65 (214)
T cd03292 14 TAALDGINISISAG---EFVFLVGPSGAGKSTLL-KLIYKE----ELPTSG----TIRVNGQDV 65 (214)
T ss_pred ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 888876 456677 667777543
No 155
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.93 E-value=4.2e-09 Score=68.10 Aligned_cols=52 Identities=15% Similarity=0.380 Sum_probs=43.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~~l~~v~~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 64 (205)
T cd03226 13 TEILDDLSLDLYAG---EIIALTGKNGAGKTTLA-KILAGL----IKESSG----SILLNGKPI 64 (205)
T ss_pred CceeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEh
Confidence 35789999999999 99999999999999999 778776 456677 677777654
No 156
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.93 E-value=4e-09 Score=68.64 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=43.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 17 ~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 67 (216)
T TIGR00960 17 PALDNLNFHITKG---EMVFLVGHSGAGKSTFL-KLILGI----EKPTRG----KIRFNGQDL 67 (216)
T ss_pred eEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEeh
Confidence 4789999999999 99999999999999999 888876 456667 677777644
No 157
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=4.2e-09 Score=69.36 Aligned_cols=52 Identities=37% Similarity=0.625 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~ 64 (235)
T cd03261 13 RTVLKGVDLDVRRG---EILAIIGPSGSGKSTLL-RLIVGL----LRPDSG----EVLIDGEDI 64 (235)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 777776 456667 667777543
No 158
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.92 E-value=4.1e-09 Score=69.59 Aligned_cols=52 Identities=19% Similarity=0.419 Sum_probs=42.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 15 ~~il~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 66 (243)
T TIGR02315 15 KQALKNINLNINPG---EFVAIIGPSGAGKSTLL-RCINRL----VEPSSG----SILLEGTDI 66 (243)
T ss_pred cceeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCcc----EEEECCEEh
Confidence 45789999999999 99999999999999999 788876 456666 566776543
No 159
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.92 E-value=4.1e-09 Score=68.89 Aligned_cols=51 Identities=31% Similarity=0.580 Sum_probs=43.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 19 ~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 69 (228)
T cd03257 19 KALDDVSFSIKKG---ETLGLVGESGSGKSTLA-RAILGL----LKPTSG----SIIFDGKDL 69 (228)
T ss_pred eeecCceeEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence 5789999999999 99999999999999999 888886 456777 667777543
No 160
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.92 E-value=4.9e-09 Score=67.93 Aligned_cols=52 Identities=33% Similarity=0.522 Sum_probs=43.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 14 ~~il~~vs~~i~~G---~~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 65 (211)
T cd03225 14 RPALDDISLTIKKG---EFVLIVGPNGSGKSTLL-RLLNGL----LGPTSG----EVLVDGKDL 65 (211)
T ss_pred eeeecceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEc
Confidence 45789999999999 99999999999999999 788776 456677 667777544
No 161
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.92 E-value=4.8e-09 Score=67.68 Aligned_cols=51 Identities=24% Similarity=0.426 Sum_probs=42.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..
T Consensus 11 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~ 61 (206)
T TIGR03608 11 KIILDDLNLTIEKG---KMYAIIGESGSGKSTLL-NIIGLL----EKFDSG----QVYLNGKE 61 (206)
T ss_pred EEEEeceEEEEeCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEE
Confidence 45789999999999 99999999999999999 888776 456777 66777765
No 162
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.92 E-value=4.8e-09 Score=68.38 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=43.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 15 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 66 (220)
T cd03263 15 KPAVDDLSLNVYKG---EIFGLLGHNGAGKTTTL-KMLTGE----LRPTSG----TAYINGYSI 66 (220)
T ss_pred ceeecceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEec
Confidence 45789999999999 99999999999999999 888886 457777 667777654
No 163
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.92 E-value=5.5e-09 Score=68.12 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=42.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 14 ~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 64 (222)
T cd03224 14 QILFGVSLTVPEG---EIVALLGRNGAGKTTLL-KTIMGL----LPPRSG----SIRFDGRDI 64 (222)
T ss_pred eEeeeeeEEEcCC---eEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence 5789999999999 99999999999999999 788876 456777 667776543
No 164
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=5.2e-09 Score=68.90 Aligned_cols=51 Identities=29% Similarity=0.619 Sum_probs=43.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|.++
T Consensus 23 ~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~i 73 (233)
T PRK11629 23 DVLHNVSFSIGEG---EMMAIVGSSGSGKSTLL-HLLGGL----DTPTSG----DVIFNGQPM 73 (233)
T ss_pred eeEEeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence 5799999999999 99999999999999999 888776 456777 677777543
No 165
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.92 E-value=5e-09 Score=68.18 Aligned_cols=51 Identities=25% Similarity=0.470 Sum_probs=43.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 19 ~il~~~sl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 69 (218)
T cd03266 19 QAVDGVSFTVKPG---EVTGLLGPNGAGKTTTL-RMLAGL----LEPDAG----FATVDGFDV 69 (218)
T ss_pred eeecceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----cCCCCc----eEEECCEEc
Confidence 5899999999999 99999999999999999 888886 456777 677777655
No 166
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.92 E-value=4.5e-09 Score=67.83 Aligned_cols=52 Identities=27% Similarity=0.489 Sum_probs=43.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 14 ~~il~~~s~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~v~~~g~~~ 65 (200)
T PRK13540 14 QPLLQQISFHLPAG---GLLHLKGSNGAGKTTLL-KLIAGL----LNPEKG----EILFERQSI 65 (200)
T ss_pred eeEEeeeeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----eEEECCCcc
Confidence 45789999999999 99999999999999999 788876 456777 677777654
No 167
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=4.7e-09 Score=68.18 Aligned_cols=52 Identities=29% Similarity=0.551 Sum_probs=43.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~ 64 (213)
T cd03259 13 VRALDDLSLTVEPG---EFLALLGPSGCGKTTLL-RLIAGL----ERPDSG----EILIDGRDV 64 (213)
T ss_pred eeeecceeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEc
Confidence 35789999999999 99999999999999999 878776 456677 667777643
No 168
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=6.5e-09 Score=66.03 Aligned_cols=52 Identities=29% Similarity=0.574 Sum_probs=42.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 13 ~~~l~~i~~~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 64 (178)
T cd03229 13 KTVLNDVSLNIEAG---EIVALLGPSGSGKSTLL-RCIAGL----EEPDSG----SILIDGEDL 64 (178)
T ss_pred eEEEeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 777776 456677 666776544
No 169
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.91 E-value=4.8e-09 Score=67.98 Aligned_cols=52 Identities=29% Similarity=0.473 Sum_probs=43.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 13 ~~~l~~~s~~i~~G---~~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 64 (213)
T cd03262 13 FHVLKGIDLTVKKG---EVVVIIGPSGSGKSTLL-RCINLL----EEPDSG----TIIIDGLKL 64 (213)
T ss_pred eEeecCceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence 35789999999999 99999999999999999 888876 456677 667777644
No 170
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=4.4e-09 Score=68.17 Aligned_cols=52 Identities=27% Similarity=0.539 Sum_probs=43.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~~l~~v~~~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 64 (210)
T cd03269 13 VTALDDISFSVEKG---EIFGLLGPNGAGKTTTI-RMILGI----ILPDSG----EVLFDGKPL 64 (210)
T ss_pred EEEEeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCCch
Confidence 35789999999999 99999999999999999 888876 456677 677777543
No 171
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.91 E-value=5.9e-09 Score=67.65 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=42.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 13 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~v~~~g~~~ 64 (213)
T cd03301 13 VTALDDLNLDIADG---EFVVLLGPSGCGKTTTL-RMIAGL----EEPTSG----RIYIGGRDV 64 (213)
T ss_pred eeeeeceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 888876 456667 566666543
No 172
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.90 E-value=2.7e-09 Score=64.62 Aligned_cols=49 Identities=27% Similarity=0.511 Sum_probs=40.6
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
++++++.+.++ ..++++|++|+|||||+ +.+.+. +.|..| .+.+++..+
T Consensus 1 L~~v~~~i~~g---~~~~i~G~nGsGKStLl-~~l~g~----~~~~~G----~i~~~~~~~ 49 (137)
T PF00005_consen 1 LKNVSLEIKPG---EIVAIVGPNGSGKSTLL-KALAGL----LPPDSG----SILINGKDI 49 (137)
T ss_dssp EEEEEEEEETT---SEEEEEESTTSSHHHHH-HHHTTS----SHESEE----EEEETTEEG
T ss_pred CCceEEEEcCC---CEEEEEccCCCccccce-eeeccc----cccccc----ccccccccc
Confidence 57889999999 99999999999999999 788776 455666 677777544
No 173
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.90 E-value=5.9e-09 Score=68.52 Aligned_cols=51 Identities=31% Similarity=0.612 Sum_probs=43.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 19 ~il~~~s~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 69 (233)
T cd03258 19 TALKDVSLSVPKG---EIFGIIGRSGAGKSTLI-RCINGL----ERPTSG----SVLVDGTDL 69 (233)
T ss_pred eeeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence 6889999999999 99999999999999999 777776 456677 677777654
No 174
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.90 E-value=4.5e-09 Score=69.97 Aligned_cols=52 Identities=27% Similarity=0.502 Sum_probs=46.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...+++++|++.+| .++++||.+|+|||||+ |.+.+. +.|+.| ++.++|+..
T Consensus 40 ~~aL~disf~i~~G---e~vGiiG~NGaGKSTLl-kliaGi----~~Pt~G----~v~v~G~v~ 91 (249)
T COG1134 40 FWALKDISFEIYKG---ERVGIIGHNGAGKSTLL-KLIAGI----YKPTSG----KVKVTGKVA 91 (249)
T ss_pred EEEecCceEEEeCC---CEEEEECCCCCcHHHHH-HHHhCc----cCCCCc----eEEEcceEe
Confidence 45689999999999 99999999999999999 999998 789988 788888644
No 175
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.90 E-value=6e-09 Score=67.65 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=42.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|..+
T Consensus 15 ~~il~~is~~i~~G---~~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~~ 66 (214)
T TIGR02673 15 VAALHDVSLHIRKG---EFLFLTGPSGAGKTTLL-KLLYGA----LTPSRG----QVRIAGEDV 66 (214)
T ss_pred ceeecceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence 45789999999999 99999999999999999 788876 356667 566776543
No 176
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.90 E-value=6.4e-09 Score=68.60 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=43.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 14 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~i 65 (236)
T TIGR03864 14 RRALDDVSFTVRPG---EFVALLGPNGAGKSTLF-SLLTRL----YVAQEG----QISVAGHDL 65 (236)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 888876 456777 677777654
No 177
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.90 E-value=7.3e-09 Score=66.70 Aligned_cols=52 Identities=29% Similarity=0.484 Sum_probs=43.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 13 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 64 (198)
T TIGR01189 13 RMLFEGLSFTLNAG---EALQVTGPNGIGKTTLL-RILAGL----LRPDSG----EVRWNGTAL 64 (198)
T ss_pred EEEEeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCcc----EEEECCEEc
Confidence 35789999999999 99999999999999999 788876 456777 667777654
No 178
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=6.3e-09 Score=67.92 Aligned_cols=52 Identities=31% Similarity=0.538 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 17 ~~il~~vs~~i~~G---~~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 68 (220)
T cd03293 17 VTALEDISLSVEEG---EFVALVGPSGCGKSTLL-RIIAGL----ERPTSG----EVLVDGEPV 68 (220)
T ss_pred eEEEeceeEEEeCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 777776 456677 667777543
No 179
>PRK10908 cell division protein FtsE; Provisional
Probab=98.89 E-value=8.1e-09 Score=67.48 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=43.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 15 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~i 66 (222)
T PRK10908 15 RQALQGVTFHMRPG---EMAFLTGHSGAGKSTLL-KLICGI----ERPSAG----KIWFSGHDI 66 (222)
T ss_pred CeEEeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence 45789999999999 99999999999999999 777776 456677 667777544
No 180
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.89 E-value=5.8e-09 Score=68.44 Aligned_cols=51 Identities=16% Similarity=0.354 Sum_probs=43.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 13 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~ 63 (230)
T TIGR03410 13 SHILRGVSLEVPKG---EVTCVLGRNGVGKTTLL-KTLMGL----LPVKSG----SIRLDGED 63 (230)
T ss_pred eEEecceeeEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEE
Confidence 35789999999999 99999999999999999 888887 456677 66777654
No 181
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=6.7e-09 Score=68.45 Aligned_cols=52 Identities=25% Similarity=0.484 Sum_probs=42.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|.++
T Consensus 14 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 65 (241)
T cd03256 14 KKALKDVSLSINPG---EFVALIGPSGAGKSTLL-RCLNGL----VEPTSG----SVLIDGTDI 65 (241)
T ss_pred cEEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCCc----eEEECCEec
Confidence 35789999999999 99999999999999999 777776 356666 566666543
No 182
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=6.5e-09 Score=67.86 Aligned_cols=52 Identities=23% Similarity=0.440 Sum_probs=42.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~ 64 (220)
T cd03265 13 FEAVRGVSFRVRRG---EIFGLLGPNGAGKTTTI-KMLTTL----LKPTSG----RATVAGHDV 64 (220)
T ss_pred EEeeeceeEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEec
Confidence 35789999999999 99999999999999999 888886 456667 566666543
No 183
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.89 E-value=6.3e-09 Score=68.30 Aligned_cols=52 Identities=19% Similarity=0.487 Sum_probs=43.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 64 (232)
T cd03218 13 RKVVNGVSLSVKQG---EIVGLLGPNGAGKTTTF-YMIVGL----VKPDSG----KILLDGQDI 64 (232)
T ss_pred EEeeccceeEecCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEec
Confidence 35789999999999 99999999999999999 888876 456677 666776543
No 184
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=7.1e-09 Score=69.36 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=43.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 14 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 65 (255)
T PRK11248 14 KPALEDINLTLESG---ELLVVLGPSGCGKTTLL-NLIAGF----VPYQHG----SITLDGKPV 65 (255)
T ss_pred eeeEeeeeEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence 35789999999999 99999999999999999 878776 456677 667777543
No 185
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.89 E-value=4.9e-09 Score=76.11 Aligned_cols=51 Identities=35% Similarity=0.527 Sum_probs=44.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++++| .+++++|++|+|||||+ +.+.+. |+|+.| ++.+||.++
T Consensus 349 ~vL~~isl~i~~G---~~vaIvG~SGsGKSTLl-~lL~g~----~~p~~G----~I~i~g~~i 399 (529)
T TIGR02868 349 PVLDGVSLDLPPG---ERVAILGPSGSGKSTLL-MLLTGL----LDPLQG----EVTLDGVSV 399 (529)
T ss_pred ceeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEh
Confidence 4789999999999 99999999999999999 777777 678888 788888655
No 186
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.89 E-value=7.7e-09 Score=66.92 Aligned_cols=52 Identities=29% Similarity=0.518 Sum_probs=43.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 14 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~p~~G----~v~~~g~~~ 65 (204)
T PRK13538 14 RILFSGLSFTLNAG---ELVQIEGPNGAGKTSLL-RILAGL----ARPDAG----EVLWQGEPI 65 (204)
T ss_pred EEEEecceEEECCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEc
Confidence 35789999999999 99999999999999999 788876 456677 667777654
No 187
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.89 E-value=2.4e-08 Score=60.83 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=40.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFL--QEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
++++++|+.|+|||||+.++....+. ..+.++... +...+.+++ ..+.+|||.|..++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~ 63 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETE 63 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCc
Confidence 68999999999999999888776532 222222222 233445554 467899999987653
No 188
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.88 E-value=8.6e-09 Score=65.57 Aligned_cols=51 Identities=27% Similarity=0.558 Sum_probs=43.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~l~~~~~~i~~G---~~~~l~G~nGsGKStLl-~~i~G~----~~~~~G----~v~~~g~~~ 63 (180)
T cd03214 13 TVLDDLSLSIEAG---EIVGILGPNGAGKSTLL-KTLAGL----LKPSSG----EILLDGKDL 63 (180)
T ss_pred eeEeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence 5789999999999 99999999999999999 888886 456777 677887654
No 189
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.88 E-value=8.8e-09 Score=64.73 Aligned_cols=52 Identities=23% Similarity=0.492 Sum_probs=43.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~vl~~i~~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~v~~~g~~~ 64 (163)
T cd03216 13 VKALDGVSLSVRRG---EVHALLGENGAGKSTLM-KILSGL----YKPDSG----EILVDGKEV 64 (163)
T ss_pred eEEEeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEC
Confidence 35789999999999 99999999999999999 888886 456677 677777543
No 190
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=7.5e-09 Score=68.39 Aligned_cols=52 Identities=21% Similarity=0.478 Sum_probs=42.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 15 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 66 (239)
T cd03296 15 FVALDDVSLDIPSG---ELVALLGPSGSGKTTLL-RLIAGL----ERPDSG----TILFGGEDA 66 (239)
T ss_pred EEeeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 777776 456667 566666543
No 191
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.88 E-value=8.3e-09 Score=67.27 Aligned_cols=51 Identities=31% Similarity=0.590 Sum_probs=42.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|.++
T Consensus 19 ~~l~~isl~i~~G---~~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~ 69 (221)
T TIGR02211 19 RVLKGVSLSIGKG---EIVAIVGSSGSGKSTLL-HLLGGL----DNPTSG----EVLFNGQSL 69 (221)
T ss_pred EeEeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEh
Confidence 5789999999999 99999999999999999 888776 456677 566776543
No 192
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=7.8e-09 Score=68.32 Aligned_cols=52 Identities=19% Similarity=0.391 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 16 ~~~l~~~sl~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 67 (241)
T PRK10895 16 RRVVEDVSLTVNSG---EIVGLLGPNGAGKTTTF-YMVVGI----VPRDAG----NIIIDDEDI 67 (241)
T ss_pred EEEEeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence 35789999999999 99999999999999999 888886 456667 666776543
No 193
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.88 E-value=8.1e-09 Score=69.58 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=42.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..
T Consensus 20 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~ 70 (272)
T PRK15056 20 HTALRDASFTVPGG---SIAALVGVNGSGKSTLF-KALMGF----VRLASG----KISILGQP 70 (272)
T ss_pred cEEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEE
Confidence 35789999999999 99999999999999999 888876 456667 56666654
No 194
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.88 E-value=8.3e-09 Score=67.64 Aligned_cols=51 Identities=27% Similarity=0.518 Sum_probs=42.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 24 ~~l~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~~ 74 (228)
T PRK10584 24 SILTGVELVVKRG---ETIALIGESGSGKSTLL-AILAGL----DDGSSG----EVSLVGQPL 74 (228)
T ss_pred EEEeccEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCe----eEEECCEEc
Confidence 3789999999999 99999999999999999 888886 456667 566666543
No 195
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.88 E-value=7.8e-09 Score=69.38 Aligned_cols=52 Identities=27% Similarity=0.524 Sum_probs=43.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 24 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i 75 (265)
T TIGR02769 24 APVLTNVSLSIEEG---ETVGLLGRSGCGKSTLA-RLLLGL----EKPAQG----TVSFRGQDL 75 (265)
T ss_pred eEEeeCceeEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEc
Confidence 45789999999999 99999999999999999 888886 467777 677777543
No 196
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.88 E-value=7.9e-09 Score=70.64 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=44.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 6 ~~~l~~vs~~i~~G---e~~~l~G~NGaGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 57 (302)
T TIGR01188 6 FKAVDGVNFKVREG---EVFGFLGPNGAGKTTTI-RMLTTL----LRPTSG----TARVAGYDV 57 (302)
T ss_pred eeEEeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence 45789999999999 99999999999999999 888887 467777 677777654
No 197
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=1.1e-08 Score=64.79 Aligned_cols=51 Identities=24% Similarity=0.489 Sum_probs=42.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.++ ..++++|++|+|||||+ +.+.+. +.|..| ++.++|..+
T Consensus 14 ~~l~~~~~~i~~G---e~~~i~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~g~~~ 64 (173)
T cd03230 14 TALDDISLTVEKG---EIYGLLGPNGAGKTTLI-KIILGL----LKPDSG----EIKVLGKDI 64 (173)
T ss_pred eeeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEc
Confidence 5789999999999 99999999999999999 888876 456667 667777654
No 198
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.87 E-value=1.7e-08 Score=63.89 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=42.9
Q ss_pred eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-e-EEEEEECCeEEEEEEEecCCCC
Q psy6968 16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-F-KKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~-~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
....+.....+++++|++|+|||||+++++...+...+.++.+. . ......++ .+.+|||+|..
T Consensus 10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~ 75 (179)
T TIGR03598 10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYG 75 (179)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCc
Confidence 33344445589999999999999999999887655444444331 1 11223333 58899999953
No 199
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=7.8e-09 Score=70.18 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=43.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 21 ~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~L~Gl----~~p~~G----~i~~~g~~i 71 (286)
T PRK13646 21 QAIHDVNTEFEQG---KYYAIVGQTGSGKSTLI-QNINAL----LKPTTG----TVTVDDITI 71 (286)
T ss_pred CceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence 5899999999999 99999999999999999 888876 467777 677777654
No 200
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.87 E-value=4.8e-09 Score=69.82 Aligned_cols=49 Identities=37% Similarity=0.689 Sum_probs=42.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
.+++++++++.+| ..+.++|++|||||||. |.+.+. ..|+.| ++.++|+
T Consensus 21 ~~l~~VS~~i~~G---e~lgivGeSGsGKSTL~-r~l~Gl----~~p~~G----~I~~~G~ 69 (252)
T COG1124 21 HALNNVSLEIERG---ETLGIVGESGSGKSTLA-RLLAGL----EKPSSG----SILLDGK 69 (252)
T ss_pred hhhcceeEEecCC---CEEEEEcCCCCCHHHHH-HHHhcc----cCCCCc----eEEECCc
Confidence 4789999999999 99999999999999999 888886 467777 6777774
No 201
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.87 E-value=8.9e-09 Score=67.11 Aligned_cols=52 Identities=25% Similarity=0.458 Sum_probs=43.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 24 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~i 75 (214)
T PRK13543 24 EPVFGPLDFHVDAG---EALLVQGDNGAGKTTLL-RVLAGL----LHVESG----QIQIDGKTA 75 (214)
T ss_pred ceeeecceEEECCC---CEEEEEcCCCCCHHHHH-HHHhCC----CCCCCe----eEEECCEEc
Confidence 45789999999999 99999999999999999 888876 466777 677777544
No 202
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.87 E-value=9.3e-09 Score=68.42 Aligned_cols=52 Identities=23% Similarity=0.480 Sum_probs=43.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~i 64 (252)
T TIGR03005 13 LTVLDGLNFSVAAG---EKVALIGPSGSGKSTIL-RILMTL----EPIDEG----QIQVEGEQL 64 (252)
T ss_pred eeEEeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence 45789999999999 99999999999999999 888886 456677 667777644
No 203
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.87 E-value=5.8e-09 Score=67.72 Aligned_cols=51 Identities=25% Similarity=0.424 Sum_probs=42.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 12 ~~~l~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~ 62 (213)
T cd03235 12 HPVLEDVSFEVKPG---EFLAIVGPNGAGKSTLL-KAILGL----LKPTSG----SIRVFGKP 62 (213)
T ss_pred EEeeecceeEEcCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCCC----EEEECCcc
Confidence 35789999999999 99999999999999999 888886 456677 66677643
No 204
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.87 E-value=8e-09 Score=67.97 Aligned_cols=50 Identities=24% Similarity=0.500 Sum_probs=41.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 14 ~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~ 63 (236)
T cd03219 14 VALDDVSFSVRPG---EIHGLIGPNGAGKTTLF-NLISGF----LRPTSG----SVLFDGED 63 (236)
T ss_pred EEecCceEEecCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCCc----eEEECCEE
Confidence 4789999999999 99999999999999999 888876 356666 56666654
No 205
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.87 E-value=8.8e-09 Score=69.24 Aligned_cols=51 Identities=37% Similarity=0.604 Sum_probs=43.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 27 ~~l~~vsl~i~~G---e~~~i~G~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 77 (267)
T PRK15112 27 EAVKPLSFTLREG---QTLAIIGENGSGKSTLA-KMLAGM----IEPTSG----ELLIDDHPL 77 (267)
T ss_pred ceeeeeeEEecCC---CEEEEEcCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEEC
Confidence 5789999999999 99999999999999999 888887 567777 667777544
No 206
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=7.6e-09 Score=68.78 Aligned_cols=52 Identities=23% Similarity=0.487 Sum_probs=44.6
Q ss_pred CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.++.+.++++.+++| ..++++|++|+|||||+ |.+.+. .+|+.| ++.++|.+
T Consensus 16 ~~~aL~~Vnl~I~~G---E~VaiIG~SGaGKSTLL-R~lngl----~d~t~G----~i~~~g~~ 67 (258)
T COG3638 16 GHQALKDVNLEINQG---EMVAIIGPSGAGKSTLL-RSLNGL----VDPTSG----EILFNGVQ 67 (258)
T ss_pred CceeeeeEeEEeCCC---cEEEEECCCCCcHHHHH-HHHhcc----cCCCcc----eEEecccc
Confidence 467789999999999 99999999999999999 888886 578877 66777653
No 207
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.86 E-value=9.7e-09 Score=65.43 Aligned_cols=50 Identities=26% Similarity=0.502 Sum_probs=42.5
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 15 ~l~~vs~~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 64 (182)
T cd03215 15 AVRDVSFEVRAG---EIVGIAGLVGNGQTELA-EALFGL----RPPASG----EITLDGKPV 64 (182)
T ss_pred eecceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence 679999999999 99999999999999999 888887 467777 677777544
No 208
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.86 E-value=1e-08 Score=65.25 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=41.0
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
...+++++|++|+|||||+.+++.+.|...+.++.+.-. .+.+......+.+|||+|..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~l~l~DtpG~~ 81 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQ-LINFFEVNDKLRLVDLPGYG 81 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcee-EEEEEecCCeEEEeCCCCCC
Confidence 347999999999999999999998766665655533210 11111123678999999954
No 209
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.86 E-value=1.5e-08 Score=72.08 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=42.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
.+++++|.+|||||||+++++.... ...+..+ .+.+...+.+++ ..+.+|||+|++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCC
Confidence 4899999999999999999987653 2333332 233345667777 6789999999987
No 210
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=1.2e-08 Score=66.05 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=43.6
Q ss_pred CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+.+++++++.+.+| ..++++|++|+|||||+ +.+.+..... .|+.| ++.++|..+
T Consensus 19 ~~~il~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~~~~~-~~~~G----~i~i~g~~~ 74 (202)
T cd03233 19 KIPILKDFSGVVKPG---EMVLVLGRPGSGCSTLL-KALANRTEGN-VSVEG----DIHYNGIPY 74 (202)
T ss_pred CceeeeeEEEEECCC---cEEEEECCCCCCHHHHH-HHhcccCCCC-CCcce----EEEECCEEC
Confidence 346789999999999 99999999999999999 8888873210 15566 667777543
No 211
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.86 E-value=9e-09 Score=67.41 Aligned_cols=56 Identities=21% Similarity=0.386 Sum_probs=43.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+...+. +.|..| ++.++|..+
T Consensus 13 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~~ 69 (227)
T cd03260 13 KHALKDISLDIPKG---EITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEG----EVLLDGKDI 69 (227)
T ss_pred ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhcccccCCCCCe----EEEECCEEh
Confidence 35789999999999 99999999999999999 7888763211 145566 667777543
No 212
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=1e-08 Score=69.24 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=42.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|.++
T Consensus 21 ~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~i 71 (280)
T PRK13649 21 RALFDVNLTIEDG---SYTAFIGHTGSGKSTIM-QLLNGL----HVPTQG----SVRVDDTLI 71 (280)
T ss_pred ceeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence 5789999999999 99999999999999999 888876 456667 666777544
No 213
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.86 E-value=5.2e-09 Score=63.52 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=32.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~ 81 (93)
|++++|++|||||||+++++.+.+. +.++.+ +.+.+ .+|||+|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-----~~~~~-----~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-----VEYND-----GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-----EEEcC-----eeecCchh
Confidence 7999999999999999999877652 344422 22222 57999997
No 214
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=1.1e-08 Score=67.66 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=43.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 15 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 66 (242)
T PRK11124 15 HQALFDITLDCPQG---ETLVLLGPSGAGKSSLL-RVLNLL----EMPRSG----TLNIAGNHF 66 (242)
T ss_pred eeeEeeeeeEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEec
Confidence 46789999999999 99999999999999999 778776 456677 677777654
No 215
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.86 E-value=1.1e-08 Score=67.21 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=42.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|..
T Consensus 20 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~ 70 (225)
T PRK10247 20 AKILNNISFSLRAG---EFKLITGPSGCGKSTLL-KIVASL----ISPTSG----TLLFEGED 70 (225)
T ss_pred ceeeeccEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCC----eEEECCEE
Confidence 45789999999999 99999999999999999 788876 456677 56666654
No 216
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=8.6e-09 Score=69.38 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=43.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 14 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i 65 (271)
T PRK13638 14 EPVLKGLNLDFSLS---PVTGLVGANGCGKSTLF-MNLSGL----LRPQKG----AVLWQGKPL 65 (271)
T ss_pred cccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCcc----EEEECCEEc
Confidence 35789999999999 99999999999999999 888886 456677 667777654
No 217
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=1.1e-08 Score=67.71 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 16 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i 67 (241)
T PRK14250 16 KEILKDISVKFEGG---AIYTIVGPSGAGKSTLI-KLINRL----IDPTEG----SILIDGVDI 67 (241)
T ss_pred eeeeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEh
Confidence 35789999999999 99999999999999999 888886 356667 677777543
No 218
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.85 E-value=1.1e-08 Score=68.90 Aligned_cols=52 Identities=27% Similarity=0.517 Sum_probs=42.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 20 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i 71 (269)
T PRK11831 20 RCIFDNISLTVPRG---KITAIMGPSGIGKTTLL-RLIGGQ----IAPDHG----EILFDGENI 71 (269)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence 34689999999999 99999999999999999 888887 456666 566666543
No 219
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1e-08 Score=69.64 Aligned_cols=51 Identities=25% Similarity=0.521 Sum_probs=43.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 21 ~~l~~vs~~i~~G---e~~~i~G~nGaGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 71 (287)
T PRK13637 21 KALDNVNIEIEDG---EFVGLIGHTGSGKSTLI-QHLNGL----LKPTSG----KIIIDGVDI 71 (287)
T ss_pred ceeeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCcc----EEEECCEEC
Confidence 5899999999999 99999999999999999 777776 457777 677777654
No 220
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.85 E-value=1.1e-08 Score=66.29 Aligned_cols=52 Identities=21% Similarity=0.470 Sum_probs=43.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 13 ~~~l~~~~~~i~~G---~~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 64 (208)
T cd03268 13 KRVLDDISLHVKKG---EIYGFLGPNGAGKTTTM-KIILGL----IKPDSG----EITFDGKSY 64 (208)
T ss_pred eEeEeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCCcc
Confidence 45789999999999 99999999999999999 778776 356677 677777654
No 221
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.1e-08 Score=68.10 Aligned_cols=52 Identities=19% Similarity=0.403 Sum_probs=43.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 18 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 69 (255)
T PRK11300 18 LLAVNNVNLEVREQ---EIVSLIGPNGAGKTTVF-NCLTGF----YKPTGG----TILLRGQHI 69 (255)
T ss_pred EEEEEeeeeEEcCC---eEEEEECCCCCCHHHHH-HHHhCC----cCCCcc----eEEECCEEC
Confidence 35789999999999 99999999999999999 888886 466777 666776543
No 222
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.85 E-value=8.3e-09 Score=77.05 Aligned_cols=52 Identities=33% Similarity=0.533 Sum_probs=46.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| .+++++|++|+|||||+ +.+.+. |.|+.| ++.+||.++
T Consensus 466 ~~vL~~isl~i~~G---e~vaIvG~sGsGKSTLl-klL~gl----~~p~~G----~I~idg~~i 517 (686)
T TIGR03797 466 PLILDDVSLQIEPG---EFVAIVGPSGSGKSTLL-RLLLGF----ETPESG----SVFYDGQDL 517 (686)
T ss_pred ccceeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEEc
Confidence 45789999999999 99999999999999999 888887 788888 788998765
No 223
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=1.3e-08 Score=67.43 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 14 ~~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 65 (242)
T cd03295 14 KKAVNNLNLEIAKG---EFLVLIGPSGSGKTTTM-KMINRL----IEPTSG----EIFIDGEDI 65 (242)
T ss_pred ceEeeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCeEc
Confidence 35789999999999 99999999999999999 788776 456667 667777543
No 224
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.84 E-value=1.3e-08 Score=67.29 Aligned_cols=52 Identities=23% Similarity=0.433 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 14 ~~il~~~s~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 65 (240)
T PRK09493 14 TQVLHNIDLNIDQG---EVVVIIGPSGSGKSTLL-RCINKL----EEITSG----DLIVDGLKV 65 (240)
T ss_pred eEEeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 788776 456677 667777543
No 225
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.84 E-value=1.2e-08 Score=65.64 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=38.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQE--ESPEGGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~--~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
..+++++|++|||||||+++++...+... +.++.......+.+++. ..+.+|||+|..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~ 100 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFI 100 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccc
Confidence 37999999999999999988887654321 22232222234445443 267899999974
No 226
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.84 E-value=1.5e-08 Score=67.61 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=43.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+.....+.|+.| ++.++|.++
T Consensus 16 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~G----~i~~~g~~i 71 (254)
T PRK10418 16 QPLVHGVSLTLQRG---RVLALVGGSGSGKSLTC-AAALGILPAGVRQTAG----RVLLDGKPV 71 (254)
T ss_pred cceecceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCCCCCCCCCcCC----EEEECCeec
Confidence 45789999999999 99999999999999999 8888874332223666 566776554
No 227
>KOG0058|consensus
Probab=98.84 E-value=5.7e-09 Score=77.71 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=47.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..+++|||+|.||||++ .++.+. |+|+.| ++.+||.++
T Consensus 481 ~~Vlk~lsfti~pG---e~vALVGPSGsGKSTia-sLL~rf----Y~PtsG----~IllDG~~i 532 (716)
T KOG0058|consen 481 VPVLKNLSFTIRPG---EVVALVGPSGSGKSTIA-SLLLRF----YDPTSG----RILLDGVPI 532 (716)
T ss_pred chhhcCceeeeCCC---CEEEEECCCCCCHHHHH-HHHHHh----cCCCCC----eEEECCeeh
Confidence 56799999999999 99999999999999999 777776 899999 899999876
No 228
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=1.3e-08 Score=67.05 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=43.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 18 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~ 69 (237)
T PRK11614 18 IQALHEVSLHINQG---EIVTLIGANGAGKTTLL-GTLCGD----PRATSG----RIVFDGKDI 69 (237)
T ss_pred ceeeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCCc----eEEECCEec
Confidence 45789999999999 99999999999999999 888876 456777 667777543
No 229
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.84 E-value=1.4e-08 Score=64.51 Aligned_cols=50 Identities=28% Similarity=0.587 Sum_probs=42.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 16 ~~l~~i~~~i~~G---e~~~i~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~g~~ 65 (178)
T cd03247 16 QVLKNLSLELKQG---EKIALLGRSGSGKSTLL-QLLTGD----LKPQQG----EITLDGVP 65 (178)
T ss_pred cceEEEEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCC----EEEECCEE
Confidence 5789999999999 99999999999999999 888876 456667 66777754
No 230
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.84 E-value=1.3e-08 Score=67.60 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=42.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 67 (250)
T PRK11264 16 QTVLHGIDLEVKPG---EVVAIIGPSGSGKTTLL-RCINLL----EQPEAG----TIRVGDITI 67 (250)
T ss_pred eeeeccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEEc
Confidence 35789999999999 99999999999999999 777776 456667 566666544
No 231
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.84 E-value=6.7e-09 Score=67.82 Aligned_cols=52 Identities=19% Similarity=0.417 Sum_probs=44.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+..++++++++.++ ..++++|++|||||||+ ..+.+. ..|..| .+++|++.+
T Consensus 18 ~~~le~vsL~ia~g---e~vv~lGpSGcGKTTLL-nl~AGf----~~P~~G----~i~l~~r~i 69 (259)
T COG4525 18 RSALEDVSLTIASG---ELVVVLGPSGCGKTTLL-NLIAGF----VTPSRG----SIQLNGRRI 69 (259)
T ss_pred hhhhhccceeecCC---CEEEEEcCCCccHHHHH-HHHhcC----cCcccc----eEEECCEec
Confidence 34689999999999 99999999999999999 777777 467777 778887755
No 232
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=1.3e-08 Score=68.76 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=44.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 18 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 69 (274)
T PRK13647 18 TKALKGLSLSIPEG---SKTALLGPNGAGKSTLL-LHLNGI----YLPQRG----RVKVMGREV 69 (274)
T ss_pred CeeeeeEEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 888876 467777 677777654
No 233
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.84 E-value=1.4e-08 Score=65.93 Aligned_cols=51 Identities=31% Similarity=0.537 Sum_probs=42.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 16 ~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 66 (207)
T PRK13539 16 VLFSGLSFTLAAG---EALVLTGPNGSGKTTLL-RLIAGL----LPPAAG----TIKLDGGDI 66 (207)
T ss_pred EEEeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEeC
Confidence 4789999999999 99999999999999999 778776 456677 677777643
No 234
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1.2e-08 Score=68.42 Aligned_cols=51 Identities=25% Similarity=0.515 Sum_probs=42.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 25 ~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 75 (265)
T PRK10575 25 TLLHPLSLTFPAG---KVTGLIGHNGSGKSTLL-KMLGRH----QPPSEG----EILLDAQPL 75 (265)
T ss_pred EEEeeeeeEEcCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCCC----EEEECCEeh
Confidence 5789999999999 99999999999999999 888886 456677 666776543
No 235
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.83 E-value=1.4e-08 Score=65.55 Aligned_cols=52 Identities=31% Similarity=0.555 Sum_probs=43.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 13 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 64 (201)
T cd03231 13 RALFSGLSFTLAAG---EALQVTGPNGSGKTTLL-RILAGL----SPPLAG----RVLLNGGPL 64 (201)
T ss_pred ceeeccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEec
Confidence 35689999999999 99999999999999999 888876 456667 566776554
No 236
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=1.5e-08 Score=68.30 Aligned_cols=52 Identities=29% Similarity=0.396 Sum_probs=42.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 37 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~L~Gl----~~p~~G----~i~i~g~~~ 88 (269)
T cd03294 37 TVGVNDVSLDVREG---EIFVIMGLSGSGKSTLL-RCINRL----IEPTSG----KVLIDGQDI 88 (269)
T ss_pred ceEeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEEc
Confidence 34689999999999 99999999999999999 778876 456667 666777543
No 237
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=1.3e-08 Score=66.84 Aligned_cols=50 Identities=26% Similarity=0.484 Sum_probs=42.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 16 ~~l~~i~~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~ 65 (234)
T cd03251 16 PVLRDISLDIPAG---ETVALVGPSGSGKSTLV-NLIPRF----YDVDSG----RILIDGHD 65 (234)
T ss_pred cceeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----ccCCCC----EEEECCEE
Confidence 5789999999999 99999999999999999 788877 456777 56677654
No 238
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.83 E-value=1.2e-08 Score=69.77 Aligned_cols=52 Identities=31% Similarity=0.578 Sum_probs=43.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 17 ~~~l~~vsl~i~~G---e~~~l~G~NGaGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 68 (303)
T TIGR01288 17 KVVVNDLSFTIARG---ECFGLLGPNGAGKSTIA-RMLLGM----ISPDRG----KITVLGEPV 68 (303)
T ss_pred eEEEcceeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 34789999999999 99999999999999999 888876 456777 677777543
No 239
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.83 E-value=1.4e-08 Score=61.88 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=38.7
Q ss_pred EEECCCCCCHHHHHHHHHhCC--CCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 28 GIVGSLASGKSALVHRFMTGA--FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 28 ~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
+++|..|+|||||+++++... +...+.++ ..........++ ..+.+|||+|.+.+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~ 59 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDD 59 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCch
Confidence 479999999999998888764 22333333 222334455555 568899999988764
No 240
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.83 E-value=1.4e-08 Score=67.13 Aligned_cols=51 Identities=20% Similarity=0.370 Sum_probs=42.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|..+
T Consensus 16 ~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~ 66 (242)
T TIGR03411 16 KALNDLSLYVDPG---ELRVIIGPNGAGKTTMM-DVITGK----TRPDEG----SVLFGGTDL 66 (242)
T ss_pred EEeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----eEEECCeec
Confidence 5789999999999 99999999999999999 888876 456667 566766543
No 241
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1.3e-08 Score=70.86 Aligned_cols=52 Identities=25% Similarity=0.480 Sum_probs=43.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 18 ~~il~~vsl~i~~G---ei~~iiG~nGsGKSTLl-k~L~Gl----~~p~~G----~I~~~g~~i 69 (343)
T PRK11153 18 IHALNNVSLHIPAG---EIFGVIGASGAGKSTLI-RCINLL----ERPTSG----RVLVDGQDL 69 (343)
T ss_pred eEEEEeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 888887 457777 677777644
No 242
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=1.6e-08 Score=70.07 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=44.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++|+|++|+|||||+ +.+.+.....+.|+.| ++.++|..+
T Consensus 20 ~~~l~~vsl~i~~G---e~~~ivG~sGsGKSTLl-~~i~Gl~~~~~~~~~G----~i~~~g~~i 75 (330)
T PRK15093 20 VKAVDRVSMTLTEG---EIRGLVGESGSGKSLIA-KAICGVTKDNWRVTAD----RMRFDDIDL 75 (330)
T ss_pred EEEEeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHHccCCCCCCCcce----EEEECCEEC
Confidence 34789999999999 99999999999999999 7787775433345666 667777543
No 243
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.83 E-value=1.5e-08 Score=66.96 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=42.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 34 ~~il~~vs~~i~~G---e~~~i~G~NGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~ 84 (236)
T cd03267 34 VEALKGISFTIEKG---EIVGFIGPNGAGKTTTL-KILSGL----LQPTSG----EVRVAGLV 84 (236)
T ss_pred eeeeeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCEE
Confidence 45789999999999 99999999999999999 888876 456667 56666653
No 244
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.83 E-value=1.8e-08 Score=63.71 Aligned_cols=51 Identities=31% Similarity=0.540 Sum_probs=42.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|..+
T Consensus 16 ~~l~~~~~~i~~G---e~~~i~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~g~~~ 66 (173)
T cd03246 16 PVLRNVSFSIEPG---ESLAIIGPSGSGKSTLA-RLILGL----LRPTSG----RVRLDGADI 66 (173)
T ss_pred cceeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCC----eEEECCEEc
Confidence 4789999999999 99999999999999999 788776 456677 667777544
No 245
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.83 E-value=1.5e-08 Score=69.24 Aligned_cols=52 Identities=23% Similarity=0.438 Sum_probs=44.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 15 ~~~l~~is~~i~~G---ei~~l~G~NGaGKTTLl-~~l~Gl----~~~~~G----~i~i~g~~~ 66 (301)
T TIGR03522 15 QNALDEVSFEAQKG---RIVGFLGPNGAGKSTTM-KIITGY----LPPDSG----SVQVCGEDV 66 (301)
T ss_pred EEEEEEeEEEEeCC---eEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence 45789999999999 99999999999999999 888876 467777 778888654
No 246
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.6e-08 Score=68.73 Aligned_cols=51 Identities=18% Similarity=0.376 Sum_probs=42.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 25 ~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i 75 (289)
T PRK13645 25 KALNNTSLTFKKN---KVTCVIGTTGSGKSTMI-QLTNGL----IISETG----QTIVGDYAI 75 (289)
T ss_pred ceeeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEc
Confidence 4789999999999 99999999999999999 888876 456667 566666543
No 247
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.82 E-value=1.4e-08 Score=71.32 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=45.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++++|++|||||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 6 ~~~l~~vs~~i~~G---ei~~l~G~sGsGKSTLL-r~L~Gl----~~p~~G----~I~i~G~~i 57 (363)
T TIGR01186 6 KKGVNDADLAIAKG---EIFVIMGLSGSGKSTTV-RMLNRL----IEPTAG----QIFIDGENI 57 (363)
T ss_pred ceeEEeeEEEEcCC---CEEEEECCCCChHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 34689999999999 99999999999999999 888887 567888 778888654
No 248
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.4e-08 Score=69.05 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=43.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 20 ~~~L~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i 71 (290)
T PRK13634 20 RRALYDVNVSIPSG---SYVAIIGHTGSGKSTLL-QHLNGL----LQPTSG----TVTIGERVI 71 (290)
T ss_pred ccceeeEEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence 35899999999999 99999999999999999 888876 456777 677777654
No 249
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.82 E-value=1.5e-08 Score=67.98 Aligned_cols=51 Identities=25% Similarity=0.509 Sum_probs=42.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.+++..
T Consensus 25 ~~il~~isl~i~~G---e~~~I~G~NGsGKSTLl-k~l~Gl----~~p~~G----~i~~~g~~ 75 (257)
T PRK11247 25 RTVLNQLDLHIPAG---QFVAVVGRSGCGKSTLL-RLLAGL----ETPSAG----ELLAGTAP 75 (257)
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEE
Confidence 35789999999999 99999999999999999 788776 456667 55666644
No 250
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.5e-08 Score=68.84 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=43.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 21 ~~l~~vsl~i~~G---e~~~iiG~NGaGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 71 (287)
T PRK13641 21 KGLDNISFELEEG---SFVALVGHTGSGKSTLM-QHFNAL----LKPSSG----TITIAGYHI 71 (287)
T ss_pred cceeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence 4799999999999 99999999999999999 777776 467777 677777654
No 251
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.82 E-value=1.8e-08 Score=66.17 Aligned_cols=52 Identities=29% Similarity=0.563 Sum_probs=44.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 35 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~ 86 (224)
T cd03220 35 FWALKDVSFEVPRG---ERIGLIGRNGAGKSTLL-RLLAGI----YPPDSG----TVTVRGRVS 86 (224)
T ss_pred eEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence 45789999999999 99999999999999999 888776 457777 677887654
No 252
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.82 E-value=1.4e-08 Score=70.78 Aligned_cols=51 Identities=25% Similarity=0.506 Sum_probs=44.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ |.+.+. ..|+.| ++.++|.++
T Consensus 19 ~~L~~vsl~i~~G---ei~gIiG~sGaGKSTLl-r~I~gl----~~p~~G----~I~i~G~~i 69 (343)
T TIGR02314 19 QALNNVSLHVPAG---QIYGVIGASGAGKSTLI-RCVNLL----ERPTSG----SVIVDGQDL 69 (343)
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence 5789999999999 99999999999999999 888887 467777 677887654
No 253
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.82 E-value=1.4e-08 Score=70.68 Aligned_cols=52 Identities=29% Similarity=0.552 Sum_probs=44.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 54 ~~~l~~is~~i~~G---ei~gLlGpNGaGKSTLl-~~L~Gl----~~p~~G----~i~i~G~~~ 105 (340)
T PRK13536 54 KAVVNGLSFTVASG---ECFGLLGPNGAGKSTIA-RMILGM----TSPDAG----KITVLGVPV 105 (340)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCce----EEEECCEEC
Confidence 34689999999999 99999999999999999 888887 467777 677777653
No 254
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.6e-08 Score=68.39 Aligned_cols=51 Identities=29% Similarity=0.556 Sum_probs=43.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 18 ~~l~~vsl~i~~G---e~~~i~G~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 68 (277)
T PRK13652 18 EALNNINFIAPRN---SRIAVIGPNGAGKSTLF-RHFNGI----LKPTSG----SVLIRGEPI 68 (277)
T ss_pred ceeeEeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence 4789999999999 99999999999999999 888876 467777 677777644
No 255
>KOG0071|consensus
Probab=98.82 E-value=7.7e-09 Score=64.05 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=50.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.+.+++.+|-.++||||++.++..++... ..||.|.....+++ +.+++.+||..||++.+.+++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnvetVty--kN~kfNvwdvGGqd~iRplWr 79 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTY--KNVKFNVWDVGGQDKIRPLWR 79 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcc-cccccceeEEEEEe--eeeEEeeeeccCchhhhHHHH
Confidence 36899999999999999999988877433 45666643456666 668999999999999887754
No 256
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.82 E-value=1.5e-08 Score=66.73 Aligned_cols=51 Identities=31% Similarity=0.549 Sum_probs=42.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 15 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~ 65 (237)
T cd03252 15 PVILDNISLRIKPG---EVVGIVGRSGSGKSTLT-KLIQRF----YVPENG----RVLVDGHD 65 (237)
T ss_pred ccceeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----EEEECCee
Confidence 34789999999999 99999999999999999 888776 456667 56666654
No 257
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.82 E-value=1.8e-08 Score=67.24 Aligned_cols=52 Identities=31% Similarity=0.482 Sum_probs=43.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 14 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~ 65 (256)
T TIGR03873 14 RLIVDGVDVTAPPG---SLTGLLGPNGSGKSTLL-RLLAGA----LRPDAG----TVDLAGVDL 65 (256)
T ss_pred EEEEeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCCC----EEEECCEEc
Confidence 45789999999999 99999999999999999 888876 456667 566666543
No 258
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.81 E-value=3.1e-08 Score=60.47 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=38.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEES-PEGGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~-~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
..+++++|+.|+|||||+.+++...+..... +.................+.+|||.|....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence 3789999999999999998887654322111 111111111223333467889999997654
No 259
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=1.6e-08 Score=68.76 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=43.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 20 ~~l~~vsl~i~~G---e~v~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i 70 (288)
T PRK13643 20 RALFDIDLEVKKG---SYTALIGHTGSGKSTLL-QHLNGL----LQPTEG----KVTVGDIVV 70 (288)
T ss_pred cceeeeEEEEcCC---CEEEEECCCCChHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence 4789999999999 99999999999999999 888886 467777 677777654
No 260
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=1.8e-08 Score=68.16 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=43.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 23 ~~vl~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~i~g~~i 74 (280)
T PRK13633 23 KLALDDVNLEVKKG---EFLVILGRNGSGKSTIA-KHMNAL----LIPSEG----KVYVDGLDT 74 (280)
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEec
Confidence 35899999999999 99999999999999999 888887 456777 667777554
No 261
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=1.9e-08 Score=63.52 Aligned_cols=51 Identities=29% Similarity=0.518 Sum_probs=42.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|..+
T Consensus 16 ~~l~~i~~~i~~G---~~~~l~G~nGsGKstLl-~~i~G~----~~~~~G----~i~~~g~~~ 66 (171)
T cd03228 16 PVLKDVSLTIKPG---EKVAIVGPSGSGKSTLL-KLLLRL----YDPTSG----EILIDGVDL 66 (171)
T ss_pred ccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCC----EEEECCEEh
Confidence 5789999999999 99999999999999999 888887 456667 566777544
No 262
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.81 E-value=1.6e-08 Score=70.65 Aligned_cols=51 Identities=20% Similarity=0.393 Sum_probs=44.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 18 ~~l~~vs~~i~~G---e~~~l~GpsGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~~ 68 (353)
T TIGR03265 18 TALKDISLSVKKG---EFVCLLGPSGCGKTTLL-RIIAGL----ERQTAG----TIYQGGRDI 68 (353)
T ss_pred EEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHCC----CCCCce----EEEECCEEC
Confidence 4688999999999 99999999999999999 888887 467777 778888654
No 263
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=1.6e-08 Score=70.72 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=44.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++++|++|||||||+ |.+.+. ..|+.| ++.++|..+
T Consensus 17 ~~~l~~vsl~i~~G---e~~~llG~sGsGKSTLL-r~iaGl----~~p~~G----~I~~~g~~i 68 (356)
T PRK11650 17 TQVIKGIDLDVADG---EFIVLVGPSGCGKSTLL-RMVAGL----ERITSG----EIWIGGRVV 68 (356)
T ss_pred CEEEeeeeEEEcCC---CEEEEECCCCCcHHHHH-HHHHCC----CCCCce----EEEECCEEC
Confidence 35688999999999 89999999999999999 888887 457777 777887654
No 264
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.81 E-value=1.9e-08 Score=67.35 Aligned_cols=51 Identities=33% Similarity=0.567 Sum_probs=42.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 15 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~p~~G----~i~~~g~~ 65 (258)
T PRK13548 15 RTLLDDVSLTLRPG---EVVAILGPNGAGKSTLL-RALSGE----LSPDSG----EVRLNGRP 65 (258)
T ss_pred eeeeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEE
Confidence 35789999999999 99999999999999999 888886 356667 56666654
No 265
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.81 E-value=1.5e-08 Score=60.25 Aligned_cols=58 Identities=26% Similarity=0.428 Sum_probs=43.0
Q ss_pred EECCCCCCHHHHHHHHHhCCC-CCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 29 IVGSLASGKSALVHRFMTGAF-LQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 29 lvG~~g~GKtsl~~r~~~~~f-~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
++|+.|+|||||+.++..... .....++..+ +.......+....+.+||+.|+..+..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh
Confidence 589999999999988888765 4445555432 345556666788999999999876643
No 266
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=1.7e-08 Score=70.55 Aligned_cols=51 Identities=25% Similarity=0.574 Sum_probs=44.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|||||||+ |.+.+. ..|+.| ++.++|..+
T Consensus 20 ~~l~~isl~i~~G---e~~~llGpsGsGKSTLL-r~IaGl----~~p~~G----~I~~~g~~i 70 (351)
T PRK11432 20 TVIDNLNLTIKQG---TMVTLLGPSGCGKTTVL-RLVAGL----EKPTEG----QIFIDGEDV 70 (351)
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHHCC----CCCCce----EEEECCEEC
Confidence 4689999999999 99999999999999999 888887 567777 778887654
No 267
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.81 E-value=1.8e-08 Score=65.72 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=42.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..
T Consensus 14 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~ 64 (218)
T cd03290 14 LATLSNINIRIPTG---QLTMIVGQVGCGKSSLL-LAILGE----MQTLEG----KVHWSNKN 64 (218)
T ss_pred CcceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCC----eEEECCcc
Confidence 45789999999999 99999999999999999 888876 356666 56666654
No 268
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.81 E-value=2.1e-08 Score=66.97 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=43.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 18 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~ 69 (257)
T PRK10619 18 HEVLKGVSLQANAG---DVISIIGSSGSGKSTFL-RCINFL----EKPSEG----SIVVNGQTI 69 (257)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEc
Confidence 35789999999999 99999999999999999 888886 456667 667777544
No 269
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.80 E-value=1.8e-08 Score=69.16 Aligned_cols=52 Identities=23% Similarity=0.503 Sum_probs=43.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|.++
T Consensus 20 ~~~l~~vsl~i~~G---ei~gllGpNGaGKSTLl-~~l~Gl----~~p~~G----~v~i~G~~~ 71 (306)
T PRK13537 20 KLVVDGLSFHVQRG---ECFGLLGPNGAGKTTTL-RMLLGL----THPDAG----SISLCGEPV 71 (306)
T ss_pred eEEEecceEEEeCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEec
Confidence 35789999999999 99999999999999999 888776 467777 677777654
No 270
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.80 E-value=2.2e-08 Score=65.42 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=43.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 18 ~~il~~vs~~i~~G---~~~~I~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~g~~~ 69 (220)
T TIGR02982 18 KQVLFDINLEINPG---EIVILTGPSGSGKTTLL-TLIGGL----RSVQEG----SLKVLGQEL 69 (220)
T ss_pred eeEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEh
Confidence 45799999999999 99999999999999999 777776 456777 677777644
No 271
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1.8e-08 Score=67.63 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=43.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 20 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~ 71 (265)
T PRK10253 20 YTVAENLTVEIPDG---HFTAIIGPNGCGKSTLL-RTLSRL----MTPAHG----HVWLDGEHI 71 (265)
T ss_pred EEEeeecceEECCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCCc----EEEECCEEh
Confidence 35789999999999 99999999999999999 888886 456666 566776543
No 272
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.80 E-value=3.8e-08 Score=70.76 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=43.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
++++++|.+++|||||+++++.... ...+..+ .+.+...+.++|. .+.+|||+|++++.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~ 277 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETD 277 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCc
Confidence 8999999999999999999987653 3333333 3333556777774 56899999987654
No 273
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=1.9e-08 Score=67.08 Aligned_cols=51 Identities=18% Similarity=0.380 Sum_probs=42.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..
T Consensus 15 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~ 65 (255)
T PRK11231 15 KRILNDLSLSLPTG---KITALIGPNGCGKSTLL-KCFARL----LTPQSG----TVFLGDKP 65 (255)
T ss_pred EEEEeeeeeEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----cCCCCc----EEEECCEE
Confidence 35789999999999 99999999999999999 888886 456666 56666654
No 274
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.80 E-value=1.9e-08 Score=67.23 Aligned_cols=51 Identities=29% Similarity=0.386 Sum_probs=42.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..
T Consensus 19 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~ 69 (258)
T PRK11701 19 RKGCRDVSFDLYPG---EVLGIVGESGSGKTTLL-NALSAR----LAPDAG----EVHYRMRD 69 (258)
T ss_pred ceeeeeeeEEEeCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCcc
Confidence 35789999999999 99999999999999999 888886 456677 56666654
No 275
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=2.1e-08 Score=67.75 Aligned_cols=51 Identities=25% Similarity=0.485 Sum_probs=42.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 16 ~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 66 (274)
T PRK13644 16 PALENINLVIKKG---EYIGIIGKNGSGKSTLA-LHLNGL----LRPQKG----KVLVSGIDT 66 (274)
T ss_pred ceeeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEC
Confidence 4799999999999 99999999999999999 888876 356667 566666543
No 276
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.80 E-value=2.2e-08 Score=65.45 Aligned_cols=51 Identities=33% Similarity=0.664 Sum_probs=42.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|..
T Consensus 13 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~~~~ 63 (223)
T TIGR03740 13 QTAVNNISLTVPKN---SVYGLLGPNGAGKSTLL-KMITGI----LRPTSG----EIIFDGHP 63 (223)
T ss_pred EEEEeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEe
Confidence 45789999999999 99999999999999999 778876 456667 56666654
No 277
>KOG0705|consensus
Probab=98.80 E-value=1.8e-09 Score=78.70 Aligned_cols=79 Identities=67% Similarity=1.120 Sum_probs=69.6
Q ss_pred CCCCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 4 SSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
..+.+.+++..+|++.+...+.|+.+||..++|||+|++||+++.+..+..|-.+.|++++.++|+.-.+.+.|-+|..
T Consensus 10 ~~~~dafvnsqewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~ 88 (749)
T KOG0705|consen 10 DSIEDAFVNSQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP 88 (749)
T ss_pred hhHHHhhccccceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc
Confidence 4456778999999999999999999999999999999999999998777666677899999999999999999987733
No 278
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.80 E-value=2e-08 Score=66.64 Aligned_cols=51 Identities=20% Similarity=0.362 Sum_probs=42.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-----cceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-----GGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-----~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+.. .|+ .| ++.++|..+
T Consensus 15 ~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~~----~p~~~~~~~G----~i~~~g~~~ 70 (247)
T TIGR00972 15 EALKNINLDIPKN---QVTALIGPSGCGKSTLL-RSLNRMN----DLVPGVRIEG----KVLFDGQDI 70 (247)
T ss_pred eeecceeEEECCC---CEEEEECCCCCCHHHHH-HHHhccC----CCCcCCCCce----EEEECCEEc
Confidence 5789999999999 99999999999999999 7787763 443 56 677777654
No 279
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.80 E-value=2.1e-08 Score=67.50 Aligned_cols=52 Identities=29% Similarity=0.502 Sum_probs=43.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 25 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~sG----~i~~~g~~~ 76 (268)
T PRK10419 25 QTVLNNVSLSLKSG---ETVALLGRSGCGKSTLA-RLLVGL----ESPSQG----NVSWRGEPL 76 (268)
T ss_pred eeeEeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEec
Confidence 45789999999999 99999999999999999 888886 456677 667777543
No 280
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.80 E-value=1.9e-08 Score=65.58 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=42.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..
T Consensus 18 ~~l~~i~~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~ 67 (221)
T cd03244 18 PVLKNISFSIKPG---EKVGIVGRTGSGKSSLL-LALFRL----VELSSG----SILIDGVD 67 (221)
T ss_pred ccccceEEEECCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCC----EEEECCEE
Confidence 5889999999999 99999999999999999 888876 456666 56666654
No 281
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=2.2e-08 Score=67.61 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=43.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|..+
T Consensus 16 ~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~~ 66 (275)
T PRK13639 16 EALKGINFKAEKG---EMVALLGPNGAGKSTLF-LHFNGI----LKPTSG----EVLIKGEPI 66 (275)
T ss_pred eeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCcc----EEEECCEEC
Confidence 4789999999999 99999999999999999 788776 456677 677777655
No 282
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.80 E-value=2.2e-08 Score=68.48 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=44.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++.+.+| ..++++|++|+||||++ +.+.+. ..|+.| ++.++|..+
T Consensus 18 ~~~l~~vs~~i~~G---ei~gllG~NGAGKTTll-k~l~gl----~~p~~G----~i~i~G~~~ 69 (293)
T COG1131 18 KTALDGVSFEVEPG---EIFGLLGPNGAGKTTLL-KILAGL----LKPTSG----EILVLGYDV 69 (293)
T ss_pred CEEEeceeEEEcCC---eEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEEcCEeC
Confidence 46789999999999 99999999999999999 888877 567777 778877543
No 283
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=2.1e-08 Score=67.52 Aligned_cols=52 Identities=29% Similarity=0.518 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 22 ~~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~~i 73 (271)
T PRK13632 22 NNALKNVSFEINEG---EYVAILGHNGSGKSTIS-KILTGL----LKPQSG----EIKIDGITI 73 (271)
T ss_pred ccceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEec
Confidence 35789999999999 99999999999999999 888876 456667 667776544
No 284
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.79 E-value=2e-08 Score=66.25 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=42.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+... +.|+.| ++.++|..
T Consensus 13 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~--~~~~~G----~i~~~g~~ 65 (243)
T TIGR01978 13 KEILKGVNLTVKKG---EIHAIMGPNGSGKSTLS-KTIAGHPS--YEVTSG----TILFKGQD 65 (243)
T ss_pred EEEEeccceEEcCC---CEEEEECCCCCCHHHHH-HHHhCCCC--CCCCcc----eEEECCEe
Confidence 35789999999999 99999999999999999 88877621 245666 56666654
No 285
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.79 E-value=1.4e-08 Score=68.43 Aligned_cols=51 Identities=33% Similarity=0.608 Sum_probs=45.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++|.+.+| ..+.+||++||||||+. |.+.+. +.||.| ++.++|+++
T Consensus 27 ~avd~Vsf~i~~g---e~~glVGESG~GKSTlg-r~i~~L----~~pt~G----~i~f~g~~i 77 (268)
T COG4608 27 KAVDGVSFSIKEG---ETLGLVGESGCGKSTLG-RLILGL----EEPTSG----EILFEGKDI 77 (268)
T ss_pred EEecceeEEEcCC---CEEEEEecCCCCHHHHH-HHHHcC----cCCCCc----eEEEcCcch
Confidence 5689999999999 99999999999999999 888887 678988 788888764
No 286
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=2.2e-08 Score=67.30 Aligned_cols=51 Identities=25% Similarity=0.443 Sum_probs=42.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 23 ~~l~~isl~i~~G---e~~~I~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~~ 73 (269)
T PRK13648 23 FTLKDVSFNIPKG---QWTSIVGHNGSGKSTIA-KLMIGI----EKVKSG----EIFYNNQAI 73 (269)
T ss_pred cceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence 3789999999999 99999999999999999 888887 456677 667777543
No 287
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.79 E-value=1.6e-08 Score=74.38 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=45.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| .+++++|++|+|||||+ +.+.+. +.|+.| .+.+||.++
T Consensus 354 ~~il~~i~l~i~~G---e~iaIvG~SGsGKSTLl-~lL~gl----~~p~~G----~I~idg~~i 405 (592)
T PRK10790 354 NLVLQNINLSVPSR---GFVALVGHTGSGKSTLA-SLLMGY----YPLTEG----EIRLDGRPL 405 (592)
T ss_pred CceeeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCc----eEEECCEEh
Confidence 35789999999999 99999999999999999 888887 678878 788888755
No 288
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.79 E-value=1.8e-08 Score=66.39 Aligned_cols=49 Identities=22% Similarity=0.539 Sum_probs=40.2
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 1 l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 49 (230)
T TIGR01184 1 LKGVNLTIQQG---EFISLIGHSGCGKSTLL-NLISGL----AQPTSG----GVILEGKQI 49 (230)
T ss_pred CCceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence 35788999999 99999999999999999 888877 456677 667777543
No 289
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.79 E-value=2.1e-08 Score=66.34 Aligned_cols=52 Identities=29% Similarity=0.497 Sum_probs=42.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++.+.+| ..++++|++|||||||+ ..+.+. -.|+.+ .+.++|..+
T Consensus 18 ~~~L~~v~l~i~~G---e~vaI~GpSGSGKSTLL-niig~l----d~pt~G----~v~i~g~d~ 69 (226)
T COG1136 18 VEALKDVNLEIEAG---EFVAIVGPSGSGKSTLL-NLLGGL----DKPTSG----EVLINGKDL 69 (226)
T ss_pred eEecccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCc----eEEECCEEc
Confidence 35689999999999 99999999999999999 777766 356777 667777543
No 290
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.79 E-value=2e-08 Score=70.57 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=43.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 17 ~vl~~vsl~i~~G---e~~~l~G~nGsGKSTLL-~~iaGl----~~p~~G----~I~~~g~~i 67 (369)
T PRK11000 17 VISKDINLDIHEG---EFVVFVGPSGCGKSTLL-RMIAGL----EDITSG----DLFIGEKRM 67 (369)
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 4689999999999 99999999999999999 888887 457777 677777654
No 291
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.79 E-value=2.2e-08 Score=65.27 Aligned_cols=51 Identities=27% Similarity=0.555 Sum_probs=42.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
+.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|..
T Consensus 17 ~~~l~~i~~~i~~G---~~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~ 67 (220)
T cd03245 17 IPALDNVSLTIRAG---EKVAIIGRVGSGKSTLL-KLLAGL----YKPTSG----SVLLDGTD 67 (220)
T ss_pred cccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----eEEECCEE
Confidence 34789999999999 99999999999999999 788776 356666 56666654
No 292
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.79 E-value=2.2e-08 Score=65.64 Aligned_cols=55 Identities=18% Similarity=0.404 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.++ ..++++|++|+|||||+ +.+.+.... +.|+.| ++.++|..+
T Consensus 20 ~~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl-k~l~G~~~~-~~~~~G----~i~~~g~~~ 74 (226)
T cd03234 20 ARILNDVSLHVESG---QVMAILGSSGSGKTTLL-DAISGRVEG-GGTTSG----QILFNGQPR 74 (226)
T ss_pred cccccCceEEEcCC---eEEEEECCCCCCHHHHH-HHHhCccCC-CCCCce----EEEECCEEC
Confidence 56789999999999 99999999999999999 788776321 125666 666776543
No 293
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=2.5e-08 Score=65.61 Aligned_cols=52 Identities=27% Similarity=0.480 Sum_probs=42.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++.++.+.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|..+
T Consensus 14 ~~~l~~i~~~i~~G---e~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~v~~~g~~~ 65 (236)
T cd03253 14 RPVLKDVSFTIPAG---KKVAIVGPSGSGKSTIL-RLLFRF----YDVSSG----SILIDGQDI 65 (236)
T ss_pred CceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCC----EEEECCEEh
Confidence 34789999999999 99999999999999999 888776 456667 566776543
No 294
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.78 E-value=1.5e-08 Score=74.30 Aligned_cols=52 Identities=29% Similarity=0.544 Sum_probs=45.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+..++++++.+++| .++++||++|+||||++ +++.+. |+|..| .+.+||.++
T Consensus 342 ~~vl~~is~~i~~G---e~vaiVG~sGsGKSTl~-~LL~r~----~~~~~G----~I~idg~dI 393 (567)
T COG1132 342 KPVLKDISFSIEPG---EKVAIVGPSGSGKSTLI-KLLLRL----YDPTSG----EILIDGIDI 393 (567)
T ss_pred CccccCceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCC----eEEECCEeh
Confidence 46789999999999 99999999999999999 888887 678777 677788665
No 295
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.78 E-value=2.3e-08 Score=65.94 Aligned_cols=50 Identities=26% Similarity=0.497 Sum_probs=42.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..++++++++.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|..
T Consensus 17 ~~l~~i~~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~ 66 (238)
T cd03249 17 PILKGLSLTIPPG---KTVALVGSSGCGKSTVV-SLLERF----YDPTSG----EILLDGVD 66 (238)
T ss_pred cceeceEEEecCC---CEEEEEeCCCCCHHHHH-HHHhcc----CCCCCC----EEEECCEe
Confidence 4789999999999 99999999999999999 888886 456677 66777754
No 296
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.78 E-value=1.5e-08 Score=75.88 Aligned_cols=52 Identities=29% Similarity=0.560 Sum_probs=45.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| .+++++|++|+|||||+ +.+.+. |.|+.| ++.+||.++
T Consensus 492 ~~vL~~isl~i~~G---e~vaIvG~sGsGKSTLl-klL~gl----~~p~~G----~I~idg~~i 543 (710)
T TIGR03796 492 PPLIENFSLTLQPG---QRVALVGGSGSGKSTIA-KLVAGL----YQPWSG----EILFDGIPR 543 (710)
T ss_pred CCcccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEeH
Confidence 45789999999999 99999999999999999 888887 678888 788888654
No 297
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.78 E-value=1.4e-08 Score=74.43 Aligned_cols=52 Identities=25% Similarity=0.448 Sum_probs=45.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++++| .+++++|++|+|||||+ +.+.+. ++|..| ++.+||.++
T Consensus 356 ~~il~~i~l~i~~G---~~~aIvG~sGsGKSTLl-~ll~gl----~~p~~G----~I~i~g~~i 407 (582)
T PRK11176 356 VPALRNINFKIPAG---KTVALVGRSGSGKSTIA-NLLTRF----YDIDEG----EILLDGHDL 407 (582)
T ss_pred CccccCceEEeCCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCc----eEEECCEEh
Confidence 34789999999999 99999999999999999 888887 678877 788888655
No 298
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=2.6e-08 Score=68.83 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=43.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 40 ~~L~~vsl~i~~G---e~~~I~G~nGsGKSTLl-~~L~Gl----~~p~~G----~I~i~g~~~ 90 (320)
T PRK13631 40 VALNNISYTFEKN---KIYFIIGNSGSGKSTLV-THFNGL----IKSKYG----TIQVGDIYI 90 (320)
T ss_pred cceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----eEEECCEEc
Confidence 4899999999999 99999999999999999 888877 467777 677776544
No 299
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.78 E-value=1.6e-08 Score=75.76 Aligned_cols=52 Identities=27% Similarity=0.484 Sum_probs=45.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| .+++++|++|+|||||+ +.+.+. |.|+.| ++.+||.++
T Consensus 487 ~~iL~~isl~i~~G---~~vaIvG~SGsGKSTLl-klL~gl----~~p~~G----~I~idg~~i 538 (708)
T TIGR01193 487 SNILSDISLTIKMN---SKTTIVGMSGSGKSTLA-KLLVGF----FQARSG----EILLNGFSL 538 (708)
T ss_pred CcceeceeEEECCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCc----EEEECCEEH
Confidence 45789999999999 99999999999999999 888887 678888 788888654
No 300
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.78 E-value=2.7e-08 Score=64.07 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=44.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.++ ..++++|++|+|||||+ +.+.+..+ +.|+.| ++.++|+.+
T Consensus 22 ~~~l~~~~~~i~~G---e~~~l~G~nGsGKStLl-~~i~Gl~~--~~~~~G----~i~~~g~~~ 75 (194)
T cd03213 22 KQLLKNVSGKAKPG---ELTAIMGPSGAGKSTLL-NALAGRRT--GLGVSG----EVLINGRPL 75 (194)
T ss_pred ccceecceEEEcCC---cEEEEECCCCCCHHHHH-HHHhCCCC--CCCCce----EEEECCEeC
Confidence 45889999999999 99999999999999999 88887631 256667 677777654
No 301
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.78 E-value=3.9e-08 Score=70.95 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=41.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
..+++++|.++||||||+++++...+ ...+..+ .+.+...+.+++..+ .+|||+|..
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~ 270 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLR 270 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCcc
Confidence 48999999999999999999998754 2233333 233355677788655 689999964
No 302
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=2.7e-08 Score=67.47 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=44.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 19 ~~~l~~vs~~i~~G---e~~~i~G~nGaGKSTLl-~~i~Gl----~~p~~G----~i~i~g~~~ 70 (283)
T PRK13636 19 THALKGININIKKG---EVTAILGGNGAGKSTLF-QNLNGI----LKPSSG----RILFDGKPI 70 (283)
T ss_pred CeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCcc----EEEECCEEC
Confidence 34889999999999 99999999999999999 888887 456777 677777654
No 303
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.78 E-value=2.1e-08 Score=73.70 Aligned_cols=51 Identities=29% Similarity=0.489 Sum_probs=43.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++++++++++| .+++++|++|+|||||+ +.+.+. | |+.| ++.+||.++
T Consensus 363 ~~vL~~i~l~i~~G---~~vaIvG~SGsGKSTL~-~lL~g~----~-p~~G----~I~i~g~~i 413 (588)
T PRK11174 363 KTLAGPLNFTLPAG---QRIALVGPSGAGKTSLL-NALLGF----L-PYQG----SLKINGIEL 413 (588)
T ss_pred CeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----C-CCCc----EEEECCEec
Confidence 45789999999999 99999999999999999 788776 6 6677 788888654
No 304
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=2.3e-08 Score=65.48 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=41.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|..
T Consensus 17 ~~l~~isl~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~ 66 (229)
T cd03254 17 PVLKDINFSIKPG---ETVAIVGPTGAGKTTLI-NLLMRF----YDPQKG----QILIDGID 66 (229)
T ss_pred ccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----EEEECCEe
Confidence 4789999999999 89999999999999999 888776 345666 56666644
No 305
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=2.7e-08 Score=67.39 Aligned_cols=51 Identities=27% Similarity=0.449 Sum_probs=43.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 21 ~~l~~vsl~i~~G---e~~~i~G~nGaGKSTLl-~~i~G~----~~p~~G----~i~~~g~~i 71 (279)
T PRK13635 21 YALKDVSFSVYEG---EWVAIVGHNGSGKSTLA-KLLNGL----LLPEAG----TITVGGMVL 71 (279)
T ss_pred cceeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence 4789999999999 99999999999999999 777777 456777 677777654
No 306
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.77 E-value=2.1e-08 Score=66.68 Aligned_cols=49 Identities=31% Similarity=0.371 Sum_probs=40.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|.
T Consensus 17 ~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~ 65 (253)
T TIGR02323 17 KGCRDVSFDLYPG---EVLGIVGESGSGKSTLL-GCLAGR----LAPDHG----TATYIMR 65 (253)
T ss_pred eEeecceEEEeCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEEecc
Confidence 5689999999999 99999999999999999 888887 456666 5555543
No 307
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=2.7e-08 Score=65.50 Aligned_cols=52 Identities=23% Similarity=0.491 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++.++++.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|..+
T Consensus 13 ~~il~~i~~~i~~G---e~~~i~G~nGsGKSTLl-~~l~g~----~~~~~G----~i~~~g~~~ 64 (232)
T cd03300 13 FVALDGVSLDIKEG---EFFTLLGPSGCGKTTLL-RLIAGF----ETPTSG----EILLDGKDI 64 (232)
T ss_pred eeeeccceEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 888776 456667 667776543
No 308
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.77 E-value=1.9e-08 Score=73.09 Aligned_cols=51 Identities=25% Similarity=0.497 Sum_probs=44.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.++++.++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 336 ~il~~i~l~i~~G---~~~~ivG~sGsGKSTL~-~ll~g~----~~~~~G----~I~~~g~~i 386 (529)
T TIGR02857 336 PALRPVSFTVPPG---ERVALVGPSGAGKSTLL-NLLLGF----VDPTEG----SIAVNGVPL 386 (529)
T ss_pred ccccceeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEeh
Confidence 5789999999999 99999999999999999 888887 678877 778888654
No 309
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.77 E-value=2.8e-08 Score=69.53 Aligned_cols=51 Identities=20% Similarity=0.438 Sum_probs=43.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 16 ~~l~~isl~i~~G---e~~~llGpsGsGKSTLL-r~IaGl----~~p~~G----~I~i~g~~i 66 (353)
T PRK10851 16 QVLNDISLDIPSG---QMVALLGPSGSGKTTLL-RIIAGL----EHQTSG----HIRFHGTDV 66 (353)
T ss_pred EEEEEeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence 4789999999999 99999999999999999 888887 467777 677777654
No 310
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=3.1e-08 Score=68.54 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=43.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|||||||+ +.+.+.....-.++.| ++.++|+++
T Consensus 21 ~~l~~vsl~i~~G---e~~~lvG~sGsGKSTL~-~~l~Gll~~~~~~~~G----~i~~~G~~i 75 (326)
T PRK11022 21 RAVDRISYSVKQG---EVVGIVGESGSGKSVSS-LAIMGLIDYPGRVMAE----KLEFNGQDL 75 (326)
T ss_pred EEEeeeEEEECCC---CEEEEECCCCChHHHHH-HHHHcCCCCCCCCcce----EEEECCEEC
Confidence 4799999999999 99999999999999999 7777764322124556 677777654
No 311
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.77 E-value=1.4e-08 Score=67.75 Aligned_cols=44 Identities=23% Similarity=0.481 Sum_probs=38.0
Q ss_pred CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
-+.++.+.+|+++++ .+.+++|+||+|||||+ +++++. +.|+.+
T Consensus 43 gk~iL~~isW~V~~g---e~W~I~G~NGsGKTTLL-~ll~~~----~~pssg 86 (257)
T COG1119 43 GKKILGDLSWQVNPG---EHWAIVGPNGAGKTTLL-SLLTGE----HPPSSG 86 (257)
T ss_pred CEeeccccceeecCC---CcEEEECCCCCCHHHHH-HHHhcc----cCCCCC
Confidence 477899999999999 99999999999999999 888775 455544
No 312
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.76 E-value=2.1e-08 Score=65.60 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=41.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 28 ~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~ 77 (226)
T cd03248 28 LVLQDVSFTLHPG---EVTALVGPSGSGKSTVV-ALLENF----YQPQGG----QVLLDGKP 77 (226)
T ss_pred ccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCc----EEEECCCc
Confidence 4789999999999 99999999999999999 888876 456666 56666653
No 313
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=3.6e-08 Score=65.11 Aligned_cols=50 Identities=24% Similarity=0.455 Sum_probs=42.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..++++++++.++ ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 13 ~~l~~is~~i~~G---e~~~i~G~nG~GKStLl-~~l~G~----~~p~~G----~v~i~g~~ 62 (235)
T cd03299 13 FKLKNVSLEVERG---DYFVILGPTGSGKSVLL-ETIAGF----IKPDSG----KILLNGKD 62 (235)
T ss_pred ceeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCEE
Confidence 3689999999999 99999999999999999 888876 467777 56666654
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.76 E-value=3.2e-08 Score=63.64 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=40.0
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+.++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 16 l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~i 64 (195)
T PRK13541 16 LFDLSITFLPS---AITYIKGANGCGKSSLL-RMIAGI----MQPSSG----NIYYKNCNI 64 (195)
T ss_pred EEEEEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCccc
Confidence 33499999999 99999999999999999 888776 456677 677777544
No 315
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.76 E-value=2.3e-08 Score=64.04 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=43.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL 72 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~ 72 (93)
..++++.++.+.+| ..+++.|++|||||+|+ +.+... ..|+.| ++.+.|+++.
T Consensus 16 a~il~~isl~v~~G---e~iaitGPSG~GKStll-k~va~L----isp~~G----~l~f~Ge~vs 68 (223)
T COG4619 16 AKILNNISLSVRAG---EFIAITGPSGCGKSTLL-KIVASL----ISPTSG----TLLFEGEDVS 68 (223)
T ss_pred CeeecceeeeecCC---ceEEEeCCCCccHHHHH-HHHHhc----cCCCCc----eEEEcCcccc
Confidence 56789999999999 99999999999999999 555555 467777 6777777653
No 316
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.76 E-value=2.2e-08 Score=74.90 Aligned_cols=52 Identities=27% Similarity=0.529 Sum_probs=45.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| .+++++|++|+|||||+ +.+.+. |.|+.| ++.+||.++
T Consensus 478 ~~vL~~i~l~i~~G---~~iaIvG~sGsGKSTLl-klL~gl----~~p~~G----~I~idg~~l 529 (694)
T TIGR03375 478 TPALDNVSLTIRPG---EKVAIIGRIGSGKSTLL-KLLLGL----YQPTEG----SVLLDGVDI 529 (694)
T ss_pred ccceeeeeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEh
Confidence 34789999999999 99999999999999999 888887 788888 788888654
No 317
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.3e-08 Score=64.56 Aligned_cols=57 Identities=30% Similarity=0.486 Sum_probs=46.6
Q ss_pred cCCCCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 3 MSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+.++.+|.+.+|++.++ .-+.|.|++|+|||||+ |.+.+. -.|..| ++.+++..+
T Consensus 10 ~~R~e~~lf~~L~f~l~~G---e~~~i~G~NG~GKTtLL-RilaGL----l~p~~G----~v~~~~~~i 66 (209)
T COG4133 10 CERGERTLFSDLSFTLNAG---EALQITGPNGAGKTTLL-RILAGL----LRPDAG----EVYWQGEPI 66 (209)
T ss_pred hccCcceeecceeEEEcCC---CEEEEECCCCCcHHHHH-HHHHcc----cCCCCC----eEEecCCCC
Confidence 3455678899999999999 99999999999999999 999998 456677 555555443
No 318
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=3.2e-08 Score=66.96 Aligned_cols=51 Identities=31% Similarity=0.504 Sum_probs=43.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 21 ~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i 71 (279)
T PRK13650 21 YTLNDVSFHVKQG---EWLSIIGHNGSGKSTTV-RLIDGL----LEAESG----QIIIDGDLL 71 (279)
T ss_pred eeeeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence 3789999999999 99999999999999999 777776 467777 677777654
No 319
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.76 E-value=1.8e-08 Score=75.72 Aligned_cols=51 Identities=29% Similarity=0.506 Sum_probs=45.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| .+++++|++|+|||||+ +.+.+. |+|+.| ++.+||.++
T Consensus 495 ~vL~~isl~i~~G---e~vaIvG~SGsGKSTLl-~lL~gl----~~p~~G----~I~idg~~i 545 (711)
T TIGR00958 495 PVLKGLTFTLHPG---EVVALVGPSGSGKSTVA-ALLQNL----YQPTGG----QVLLDGVPL 545 (711)
T ss_pred ccccCceEEEcCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCC----EEEECCEEH
Confidence 5789999999999 99999999999999999 888887 678888 788888765
No 320
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=3.2e-08 Score=65.83 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=42.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+..... ..|..| ++.++|.++
T Consensus 17 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G----~i~~~g~~i 73 (253)
T PRK14267 17 NHVIKGVDLKIPQN---GVFALMGPSGCGKSTLL-RTFNRLLELNEEARVEG----EVRLFGRNI 73 (253)
T ss_pred eeeeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhccCCcccCCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 7887763211 012356 677777654
No 321
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.76 E-value=3.5e-08 Score=65.21 Aligned_cols=52 Identities=23% Similarity=0.489 Sum_probs=42.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 13 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~i~g~~~ 64 (237)
T TIGR00968 13 FQALDDVNLEVPTG---SLVALLGPSGSGKSTLL-RIIAGL----EQPDSG----RIRLNGQDA 64 (237)
T ss_pred eeeeeeEEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 777776 456666 566776543
No 322
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.76 E-value=4.1e-08 Score=60.62 Aligned_cols=49 Identities=27% Similarity=0.504 Sum_probs=41.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.+++.
T Consensus 14 ~~l~~~~~~~~~G---e~~~i~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~~~ 62 (144)
T cd03221 14 LLLKDISLTINPG---DRIGLVGRNGAGKSTLL-KLIAGE----LEPDEG----IVTWGST 62 (144)
T ss_pred eEEEeeEEEECCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCce----EEEECCe
Confidence 5789999999999 99999999999999999 888876 456677 6777764
No 323
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.75 E-value=3e-08 Score=70.44 Aligned_cols=52 Identities=25% Similarity=0.537 Sum_probs=43.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 16 ~~vL~~vs~~i~~G---eiv~liGpNGaGKSTLL-k~LaGl----l~p~sG----~I~l~G~~i 67 (402)
T PRK09536 16 TTVLDGVDLSVREG---SLVGLVGPNGAGKTTLL-RAINGT----LTPTAG----TVLVAGDDV 67 (402)
T ss_pred EEEEEeeEEEECCC---CEEEEECCCCchHHHHH-HHHhcC----CCCCCc----EEEECCEEc
Confidence 45789999999999 99999999999999999 888876 457777 677777543
No 324
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.75 E-value=3e-08 Score=69.90 Aligned_cols=51 Identities=24% Similarity=0.598 Sum_probs=43.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 28 ~~l~~vsl~i~~G---e~~~LlGpsGsGKSTLL-r~IaGl----~~p~~G----~I~~~g~~i 78 (375)
T PRK09452 28 EVISNLDLTINNG---EFLTLLGPSGCGKTTVL-RLIAGF----ETPDSG----RIMLDGQDI 78 (375)
T ss_pred EEEeeeEEEEeCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 4688999999999 99999999999999999 888887 467777 777887654
No 325
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.75 E-value=2.9e-08 Score=65.31 Aligned_cols=53 Identities=28% Similarity=0.413 Sum_probs=40.0
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
++++++++.+| ..++++|++|+|||||+ +.+.+...+...+..| ++.++|..+
T Consensus 2 l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~G----~i~~~g~~~ 54 (230)
T TIGR02770 2 VQDLNLSLKRG---EVLALVGESGSGKSLTC-LAILGLLPPGLTQTSG----EILLDGRPL 54 (230)
T ss_pred ccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcCCCCccCcccc----EEEECCEec
Confidence 57889999999 99999999999999999 8888773211001566 566777544
No 326
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.75 E-value=3.8e-08 Score=61.03 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=34.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC-CCC-CCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQ-EES-PEGGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~-~t~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
.|+++|++|||||||++++....... .+. ++.......+.+++. ..+.+|||+|+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCccc
Confidence 48999999999999998877543211 111 111111112334432 478999999974
No 327
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.75 E-value=2.6e-08 Score=73.22 Aligned_cols=52 Identities=21% Similarity=0.496 Sum_probs=45.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++++++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 353 ~~il~~i~~~i~~G---~~~aivG~sGsGKSTL~-~ll~g~----~~p~~G----~I~i~g~~i 404 (574)
T PRK11160 353 QPVLKGLSLQIKAG---EKVALLGRTGCGKSTLL-QLLTRA----WDPQQG----EILLNGQPI 404 (574)
T ss_pred CcceecceEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEh
Confidence 35789999999999 99999999999999999 888887 678888 788888754
No 328
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=3.3e-08 Score=66.57 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=42.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+.....+ .|+.| ++.++|.++
T Consensus 27 ~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G----~v~~~g~~i 82 (269)
T PRK14259 27 EAVKNVFCDIPRG---KVTALIGPSGCGKSTVL-RSLNRMNDLIEGCSLKG----RVLFDGTDL 82 (269)
T ss_pred EEEcceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccccCCCCCce----EEEECCEEc
Confidence 5789999999999 99999999999999999 77877632111 14566 667777654
No 329
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.75 E-value=1.8e-08 Score=75.79 Aligned_cols=51 Identities=25% Similarity=0.522 Sum_probs=45.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++.++.+++| .+++++|.+|||||||+ +.+.+. |.|+.| ++.+||.++
T Consensus 487 ~vL~~isL~I~~G---e~vaIvG~SGsGKSTL~-KLL~gl----y~p~~G----~I~~dg~dl 537 (709)
T COG2274 487 PVLEDLSLEIPPG---EKVAIVGRSGSGKSTLL-KLLLGL----YKPQQG----RILLDGVDL 537 (709)
T ss_pred chhhceeEEeCCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEeH
Confidence 4689999999999 99999999999999999 888888 788888 788888654
No 330
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=3.3e-08 Score=67.89 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=41.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
..++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|.
T Consensus 21 ~~l~~vsl~i~~G---e~v~iiG~nGsGKSTLl-~~L~Gl----~~p~~G----~i~~~g~ 69 (305)
T PRK13651 21 KALDNVSVEINQG---EFIAIIGQTGSGKTTFI-EHLNAL----LLPDTG----TIEWIFK 69 (305)
T ss_pred cceeeeEEEEeCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCc----EEEEece
Confidence 4799999999999 99999999999999999 888886 456667 5566554
No 331
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=3.9e-08 Score=68.13 Aligned_cols=52 Identities=35% Similarity=0.521 Sum_probs=42.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++|+|++|+|||||+ +.+.+.. .|+.| ++.++|..+
T Consensus 28 ~~~l~~vsl~i~~G---e~~~IvG~sGsGKSTLl-~~l~gl~----~p~~G----~i~~~g~~l 79 (327)
T PRK11308 28 VKALDGVSFTLERG---KTLAVVGESGCGKSTLA-RLLTMIE----TPTGG----ELYYQGQDL 79 (327)
T ss_pred eeEEeeeEEEECCC---CEEEEECCCCCcHHHHH-HHHHcCC----CCCCc----EEEECCEEc
Confidence 35789999999999 99999999999999999 7777763 45666 677777543
No 332
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.74 E-value=4e-08 Score=66.46 Aligned_cols=52 Identities=17% Similarity=0.397 Sum_probs=42.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--------cceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--------GGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--------~~~~~~~~~~~g~~i 71 (93)
+.+++++++.+.+| ..++++|++|+|||||+ +.+.+.. .|. .| ++.++|..+
T Consensus 14 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~laG~~----~p~~~~~~~~~~G----~i~~~g~~~ 73 (272)
T PRK13547 14 RAILRDLSLRIEPG---RVTALLGRNGAGKSTLL-KALAGDL----TGGGAPRGARVTG----DVTLNGEPL 73 (272)
T ss_pred EeEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCCC----CCcccccccCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 8888773 343 45 677777644
No 333
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.74 E-value=8.5e-08 Score=59.09 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=39.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
.+++++|+.|+|||||+.+++...+.. ....+ ...+...+..++.. +.+|||+|..+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~ 63 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRK 63 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccc
Confidence 789999999999999998888765321 12222 22223445566654 569999997654
No 334
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=3.2e-08 Score=70.25 Aligned_cols=50 Identities=30% Similarity=0.428 Sum_probs=42.9
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|.++
T Consensus 43 ~L~~isl~i~~G---ei~~LvG~NGsGKSTLL-r~I~Gl----~~p~sG----~I~i~G~~i 92 (400)
T PRK10070 43 GVKDASLAIEEG---EIFVIMGLSGSGKSTMV-RLLNRL----IEPTRG----QVLIDGVDI 92 (400)
T ss_pred EEEeEEEEEcCC---CEEEEECCCCchHHHHH-HHHHcC----CCCCCC----EEEECCEEC
Confidence 489999999999 99999999999999999 888887 467777 677777653
No 335
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.74 E-value=3.7e-08 Score=63.74 Aligned_cols=50 Identities=28% Similarity=0.456 Sum_probs=41.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|..
T Consensus 22 ~~l~~isl~i~~G---~~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~ 71 (207)
T cd03369 22 PVLKNVSFKVKAG---EKIGIVGRTGAGKSTLI-LALFRF----LEAEEG----KIEIDGID 71 (207)
T ss_pred ccccCceEEECCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCC----eEEECCEE
Confidence 5789999999999 99999999999999999 778776 456666 56666654
No 336
>KOG0074|consensus
Probab=98.74 E-value=5.1e-08 Score=60.53 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=50.0
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..+++++++|-..+||||++.. +.+.-+....||.|...+.+..+| .+.+.+||..||...+..+
T Consensus 15 ~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyW 79 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEYDG-TFHLNVWDIGGQRGIRPYW 79 (185)
T ss_pred cceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEeecC-cEEEEEEecCCccccchhh
Confidence 4569999999999999999955 444444446677664466777775 5899999999998877654
No 337
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.74 E-value=4.1e-08 Score=63.43 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=41.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g 68 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|
T Consensus 19 ~il~~~s~~i~~G---~~~~i~G~nG~GKSTLl-~~i~G~----~~~~~G----~i~~~g 66 (204)
T cd03250 19 FTLKDINLEVPKG---ELVAIVGPVGSGKSSLL-SALLGE----LEKLSG----SVSVPG 66 (204)
T ss_pred ceeeeeeEEECCC---CEEEEECCCCCCHHHHH-HHHhCc----CCCCCC----eEEEcC
Confidence 5899999999999 99999999999999999 888886 456677 667776
No 338
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.74 E-value=4.6e-08 Score=61.61 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=41.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g 68 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.+++
T Consensus 14 ~~~l~~i~l~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~~ 62 (166)
T cd03223 14 RVLLKDLSFEIKPG---DRLLITGPSGTGKSSLF-RALAGL----WPWGSG----RIGMPE 62 (166)
T ss_pred CeeeecCeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECC
Confidence 35789999999999 99999999999999999 888876 356666 556665
No 339
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=3.9e-08 Score=66.64 Aligned_cols=51 Identities=22% Similarity=0.472 Sum_probs=41.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc---ceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG---GRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~---~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+. | ++.++|..+
T Consensus 21 ~~l~~v~l~i~~G---e~~~I~G~nGaGKSTLl-~~l~G~----~~p~~g~~G----~i~i~g~~~ 74 (282)
T PRK13640 21 PALNDISFSIPRG---SWTALIGHNGSGKSTIS-KLINGL----LLPDDNPNS----KITVDGITL 74 (282)
T ss_pred cceeeEEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcc----cCCCCCCCc----EEEECCEEC
Confidence 4799999999999 99999999999999999 778776 34543 5 566666544
No 340
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.73 E-value=3.7e-08 Score=66.23 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=43.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+..... ..|+.| ++.++|..+
T Consensus 32 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~I~~~g~~i 88 (267)
T PRK14235 32 KQALFDVDLDIPEK---TVTAFIGPSGCGKSTFL-RCLNRMNDTIDGCRVTG----KITLDGEDI 88 (267)
T ss_pred EEEEEEEEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhcccccCCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 8888763210 013566 677777654
No 341
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=5e-08 Score=64.79 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=42.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+..... ..|+.| ++.++|..+
T Consensus 17 ~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~i 72 (250)
T PRK14247 17 EVLDGVNLEIPDN---TITALMGPSGSGKSTLL-RVFNRLIELYPEARVSG----EVYLDGQDI 72 (250)
T ss_pred eeeecceeEEcCC---CEEEEECCCCCCHHHHH-HHHhccCCCCCCCCCce----EEEECCEEC
Confidence 5789999999999 99999999999999999 7888764221 113566 666776543
No 342
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=4.5e-08 Score=62.86 Aligned_cols=54 Identities=17% Similarity=0.291 Sum_probs=43.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.++ ..++++|++|+|||||+ +.+.+... ..|+.| ++.++|+.+
T Consensus 20 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~~~--~~~~~G----~i~~~g~~~ 73 (192)
T cd03232 20 RQLLNNISGYVKPG---TLTALMGESGAGKTTLL-DVLAGRKT--AGVITG----EILINGRPL 73 (192)
T ss_pred eEeEEccEEEEeCC---cEEEEECCCCCCHHHHH-HHHhCCCc--CCCcce----EEEECCEeh
Confidence 45789999999999 99999999999999999 77777521 235566 677777654
No 343
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.73 E-value=5.5e-09 Score=69.52 Aligned_cols=49 Identities=24% Similarity=0.491 Sum_probs=43.6
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
++++++++.++ ..++++||+|+||||++ ..+++. |.|+.| ++.++|+.+
T Consensus 20 l~~Vsl~v~~G---ei~~LIGPNGAGKTTlf-NlitG~----~~P~~G----~v~~~G~~i 68 (250)
T COG0411 20 VNDVSLEVRPG---EIVGLIGPNGAGKTTLF-NLITGF----YKPSSG----TVIFRGRDI 68 (250)
T ss_pred EeceeEEEcCC---eEEEEECCCCCCceeee-eeeccc----ccCCCc----eEEECCccc
Confidence 79999999999 99999999999999999 778887 789988 778877744
No 344
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.73 E-value=4.6e-08 Score=65.39 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=42.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 34 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~i~g~~i 85 (257)
T cd03288 34 KPVLKHVKAYIKPG---QKVGICGRTGSGKSSLS-LAFFRM----VDIFDG----KIVIDGIDI 85 (257)
T ss_pred CcceeEEEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcc----cCCCCC----eEEECCEEh
Confidence 35789999999999 99999999999999999 777776 456667 566766543
No 345
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2e-08 Score=73.05 Aligned_cols=54 Identities=28% Similarity=0.532 Sum_probs=45.8
Q ss_pred CCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 6 NSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+...++++++++.+| .|++++|.+||||||++ ..+.+. ++|..| ++.++|.++
T Consensus 349 ~~~~~L~~~~l~l~~G---EkvAIlG~SGsGKSTll-qLl~~~----~~~~~G----~i~~~g~~~ 402 (573)
T COG4987 349 QQTKALKNFNLTLAQG---EKVAILGRSGSGKSTLL-QLLAGA----WDPQQG----SITLNGVEI 402 (573)
T ss_pred CccchhhccceeecCC---CeEEEECCCCCCHHHHH-HHHHhc----cCCCCC----eeeECCcCh
Confidence 3457899999999999 99999999999999999 777776 677777 777777654
No 346
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.73 E-value=4.2e-08 Score=68.83 Aligned_cols=51 Identities=22% Similarity=0.418 Sum_probs=43.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc--ceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG--GRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~--~~~~~~~~~~g~~i 71 (93)
..++++++++.++ ..++++|++|||||||+ +.+.+. ..|+. | ++.++|+.+
T Consensus 19 ~~l~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~iaGl----~~p~~~~G----~i~~~g~~~ 71 (362)
T TIGR03258 19 TVLDDLSLEIEAG---ELLALIGKSGCGKTTLL-RAIAGF----VKAAGLTG----RIAIADRDL 71 (362)
T ss_pred EEEeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCCCE----EEEECCEEC
Confidence 4689999999999 99999999999999999 888887 45666 7 677777654
No 347
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.73 E-value=3.3e-08 Score=72.69 Aligned_cols=52 Identities=27% Similarity=0.460 Sum_probs=44.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| .+.+||.++
T Consensus 348 ~~iL~~inl~i~~G---~~v~IvG~sGsGKSTLl-~lL~gl----~~p~~G----~I~i~g~~i 399 (588)
T PRK13657 348 RQGVEDVSFEAKPG---QTVAIVGPTGAGKSTLI-NLLQRV----FDPQSG----RILIDGTDI 399 (588)
T ss_pred CceecceeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----EEEECCEEh
Confidence 35789999999999 99999999999999999 888887 677777 778888654
No 348
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=4.5e-08 Score=63.45 Aligned_cols=48 Identities=35% Similarity=0.596 Sum_probs=39.3
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 15 ~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~gl----~~~~~G----~i~~~g~~~ 62 (211)
T cd03298 15 MHFDLTFAQG---EITAIVGPSGSGKSTLL-NLIAGF----ETPQSG----RVLINGVDV 62 (211)
T ss_pred cceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence 3889999999 99999999999999999 888876 456667 566666543
No 349
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.72 E-value=4.7e-08 Score=67.83 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=43.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++|+|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 34 ~~~l~~vsl~i~~G---e~~~lvG~sGsGKSTLl-k~i~Gl----~~p~~G----~I~~~G~~i 85 (331)
T PRK15079 34 LKAVDGVTLRLYEG---ETLGVVGESGCGKSTFA-RAIIGL----VKATDG----EVAWLGKDL 85 (331)
T ss_pred eEEEeeEEEEEcCC---CEEEEECCCCCCHHHHH-HHHHCC----CCCCCc----EEEECCEEC
Confidence 35789999999999 99999999999999999 777776 356677 677777643
No 350
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.72 E-value=3.9e-08 Score=71.88 Aligned_cols=51 Identities=33% Similarity=0.508 Sum_probs=44.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++.+.+| .+++++|++|+|||||+ +.+.+. ++|..| ++.+||.++
T Consensus 337 ~~l~~i~~~i~~G---~~~aivG~sGsGKSTL~-~ll~g~----~~~~~G----~i~~~g~~~ 387 (547)
T PRK10522 337 FSVGPINLTIKRG---ELLFLIGGNGSGKSTLA-MLLTGL----YQPQSG----EILLDGKPV 387 (547)
T ss_pred eEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEC
Confidence 4789999999999 99999999999999999 888776 677777 677887654
No 351
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.72 E-value=5.3e-08 Score=64.43 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=43.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++.++++.+.+| ..++++|+||+||||++ +-+.+. ..+..| ++.++|+++
T Consensus 16 ~~~L~gvsl~v~~G---eiv~llG~NGaGKTTlL-kti~Gl----~~~~~G----~I~~~G~di 67 (237)
T COG0410 16 IQALRGVSLEVERG---EIVALLGRNGAGKTTLL-KTIMGL----VRPRSG----RIIFDGEDI 67 (237)
T ss_pred eeEEeeeeeEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----eEEECCeec
Confidence 46789999999999 99999999999999999 767776 345567 788888765
No 352
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.72 E-value=4.7e-08 Score=65.28 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=42.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+.... ...|+.| ++.++|..+
T Consensus 17 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~laGl~~~~~~~~~~G----~I~~~g~~~ 73 (258)
T PRK14241 17 FHAVEDVNLNIEPR---SVTAFIGPSGCGKSTVL-RTLNRMHEVIPGARVEG----EVLLDGEDL 73 (258)
T ss_pred EeeeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhccCCcccCCCcce----EEEECCEec
Confidence 35789999999999 99999999999999999 778776321 0113466 677777654
No 353
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.72 E-value=2.1e-08 Score=64.16 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=37.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC----CCCCCCC-----CCcc-ee-EEEEE----------ECCeEEEEEEEecCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG----AFLQEES-----PEGG-RF-KKEVV----------IDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~----~f~~~~~-----~t~~-~~-~~~~~----------~~g~~i~~~i~d~~g~~~ 83 (93)
++++++|+.++|||||+.+++.. .+...+. .|.+ .+ ...+. .++....+.+|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999862 2222111 1211 11 11221 123467889999999865
Q ss_pred C
Q psy6968 84 L 84 (93)
Q Consensus 84 ~ 84 (93)
+
T Consensus 81 ~ 81 (192)
T cd01889 81 L 81 (192)
T ss_pred H
Confidence 3
No 354
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.72 E-value=3.2e-08 Score=71.74 Aligned_cols=52 Identities=25% Similarity=0.491 Sum_probs=46.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL 72 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~ 72 (93)
+.++++++.+.+| .-.+++|+||+|||||+ +.+.+. |.|+.| ++.++|+.+.
T Consensus 22 ~AL~~v~l~v~~G---EV~aL~GeNGAGKSTLm-KiLsGv----~~p~~G----~I~~~G~~~~ 73 (500)
T COG1129 22 KALDGVSLTVRPG---EVHALLGENGAGKSTLM-KILSGV----YPPDSG----EILIDGKPVA 73 (500)
T ss_pred eeeccceeEEeCc---eEEEEecCCCCCHHHHH-HHHhCc----ccCCCc----eEEECCEEcc
Confidence 4589999999999 99999999999999999 888887 778888 8888988764
No 355
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.72 E-value=5.3e-08 Score=65.17 Aligned_cols=55 Identities=18% Similarity=0.397 Sum_probs=41.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+..... .++.| ++.++|..+
T Consensus 17 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~p~-~~~~G----~i~~~g~~~ 71 (262)
T PRK09984 17 HQALHAVDLNIHHG---EMVALLGPSGSGKSTLL-RHLSGLITGD-KSAGS----HIELLGRTV 71 (262)
T ss_pred eEEEecceEEEcCC---cEEEEECCCCCCHHHHH-HHHhccCCCC-CCCce----EEEECCEec
Confidence 45789999999999 99999999999999999 8888763211 11235 666777554
No 356
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=4.9e-08 Score=65.98 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=42.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 21 ~~l~~v~l~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~i 71 (277)
T PRK13642 21 NQLNGVSFSITKG---EWVSIIGQNGSGKSTTA-RLIDGL----FEEFEG----KVKIDGELL 71 (277)
T ss_pred eeeeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCC----EEEECCEEC
Confidence 3789999999999 99999999999999999 888877 456777 677777543
No 357
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=4.8e-08 Score=68.90 Aligned_cols=51 Identities=27% Similarity=0.546 Sum_probs=43.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|||||||+ |.+.+. ..|+.| ++.++|+.+
T Consensus 33 ~~l~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~IaGl----~~p~~G----~I~i~g~~i 83 (377)
T PRK11607 33 HAVDDVSLTIYKG---EIFALLGASGCGKSTLL-RMLAGF----EQPTAG----QIMLDGVDL 83 (377)
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 4578999999999 99999999999999999 888887 467777 677887654
No 358
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=6.2e-08 Score=64.30 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=42.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+.... +.|+.| ++.++|+++
T Consensus 16 ~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~-~~~~~G----~i~~~g~~i 69 (246)
T PRK14269 16 QALFDINMQIEQN---KITALIGASGCGKSTFL-RCFNRMNDK-IAKIDG----LVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcccCC-CCCCce----EEEECCEec
Confidence 5789999999999 99999999999999999 777775211 235566 677777654
No 359
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.72 E-value=5.3e-08 Score=65.46 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=42.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+..... ..|+.| ++.++|..+
T Consensus 33 ~~il~~vsl~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~~ 89 (267)
T PRK14237 33 KEAIKGIDMQFEKN---KITALIGPSGSGKSTYL-RSLNRMNDTIDIARVTG----QILYRGIDI 89 (267)
T ss_pred eeeEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhccCccCCCCcce----EEEECCEEc
Confidence 45789999999999 99999999999999999 7887763211 024566 667777654
No 360
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.71 E-value=4.7e-08 Score=63.84 Aligned_cols=41 Identities=27% Similarity=0.639 Sum_probs=35.9
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
+++++++.+.++ ..++++|++|+|||||+ +.+.+. +.|+.|
T Consensus 2 vl~~vs~~i~~G---e~~~l~G~NGsGKSTLl-k~i~Gl----~~~~sG 42 (213)
T PRK15177 2 VLDKTDFVMGYH---EHIGILAAPGSGKTTLT-RLLCGL----DAPDEG 42 (213)
T ss_pred eeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----ccCCCC
Confidence 578999999999 99999999999999999 888876 456666
No 361
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.71 E-value=4.6e-08 Score=65.08 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=42.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+..... ..|+.| ++.++|+.+
T Consensus 19 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~i 75 (253)
T PRK14242 19 FQALHDISLEFEQN---QVTALIGPSGCGKSTFL-RCLNRMNDLIPGARVEG----EILLDGENI 75 (253)
T ss_pred eeeecceeEEEeCC---CEEEEECCCCCCHHHHH-HHHHhhcccCCCCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 7777753110 113566 667777654
No 362
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.71 E-value=5.6e-08 Score=62.68 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=36.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccee--E-EEEEEC-CeEEEEEEEecCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF--K-KEVVID-GHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~--~-~~~~~~-g~~i~~~i~d~~g~~~~ 84 (93)
.+++++|++|+|||||++.+++..+..+..+..+.. . ....+. +....+.+||+.|....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 689999999999999997777655443322221211 0 000111 11236889999997643
No 363
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=4.5e-08 Score=63.47 Aligned_cols=50 Identities=26% Similarity=0.512 Sum_probs=40.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.++ .++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 14 ~~l~~vs~~i~~g----~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~ 63 (211)
T cd03264 14 RALDGVSLTLGPG----MYGLLGPNGAGKTTLM-RILATL----TPPSSG----TIRIDGQDV 63 (211)
T ss_pred EEEcceeEEEcCC----cEEEECCCCCCHHHHH-HHHhCC----CCCCcc----EEEECCCcc
Confidence 5789999999875 7899999999999999 888876 456677 677777543
No 364
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.70 E-value=6e-08 Score=65.39 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=43.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+.... ...|+.| ++.++|..+
T Consensus 37 ~~il~~vsl~i~~G---e~~~I~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G----~i~~~g~~~ 93 (271)
T PRK14238 37 DHALKNINLDIHEN---EVTAIIGPSGCGKSTYI-KTLNRMVELVPSVKTTG----KILYRDQNI 93 (271)
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCce----eEEECCEEc
Confidence 35789999999999 99999999999999999 888776321 1114566 677777644
No 365
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.70 E-value=6.5e-08 Score=64.25 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=41.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+.. .+.|+.| ++.++|..
T Consensus 20 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl~--~~~~~~G----~i~~~g~~ 72 (252)
T CHL00131 20 NEILKGLNLSINKG---EIHAIMGPNGSGKSTLS-KVIAGHP--AYKILEG----DILFKGES 72 (252)
T ss_pred EEeeecceeEEcCC---cEEEEECCCCCCHHHHH-HHHcCCC--cCcCCCc----eEEECCEE
Confidence 35789999999999 99999999999999999 7888752 1345666 45555543
No 366
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.70 E-value=4.8e-08 Score=70.74 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=41.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 18 ~~l~~is~~i~~G---e~~~l~G~NGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~ 67 (501)
T PRK10762 18 KALSGAALNVYPG---RVMALVGENGAGKSTMM-KVLTGI----YTRDAG----SILYLGKE 67 (501)
T ss_pred EEeeeeeEEEcCC---eEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEE
Confidence 5789999999999 99999999999999999 888887 356666 56666644
No 367
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=6.4e-08 Score=65.77 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+...... .|+.| .+.++|..+
T Consensus 52 ~~il~~is~~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G----~I~i~G~~i 108 (285)
T PRK14254 52 EQALDDVSMDIPEN---QVTAMIGPSGCGKSTFL-RCINRMNDLIDAARVEG----ELTFRGKNV 108 (285)
T ss_pred EeeEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccCCcccCCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 88887642111 14566 667777654
No 368
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.70 E-value=6.9e-08 Score=65.07 Aligned_cols=50 Identities=28% Similarity=0.330 Sum_probs=42.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|.
T Consensus 37 ~~il~~is~~i~~G---e~~~liG~NGsGKSTLl-k~L~Gl----~~p~~G----~I~~~g~ 86 (264)
T PRK13546 37 FFALDDISLKAYEG---DVIGLVGINGSGKSTLS-NIIGGS----LSPTVG----KVDRNGE 86 (264)
T ss_pred eEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCE
Confidence 45789999999999 99999999999999999 888776 456667 6677774
No 369
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.70 E-value=5.8e-08 Score=64.98 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=42.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+..... ..|+.| ++.++|..+
T Consensus 27 ~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~p~~G----~i~~~g~~~ 82 (260)
T PRK10744 27 HALKNINLDIAKN---QVTAFIGPSGCGKSTLL-RTFNRMYELYPEQRAEG----EILLDGENI 82 (260)
T ss_pred EEeeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcccccCCCCCcce----EEEECCEEc
Confidence 5789999999999 99999999999999999 8888764210 124566 667777544
No 370
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.70 E-value=5.6e-08 Score=63.54 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=39.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~ 67 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++
T Consensus 22 ~il~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~ 68 (224)
T TIGR02324 22 PVLKNVSLTVNAG---ECVALSGPSGAGKSTLL-KSLYAN----YLPDSG----RILVR 68 (224)
T ss_pred EEEecceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----eEEEe
Confidence 5789999999999 99999999999999999 788876 456666 45554
No 371
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=5.9e-08 Score=64.64 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=41.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+...... .|+.| ++.++|..+
T Consensus 20 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~i 76 (254)
T PRK14273 20 FKALNNINIKILKN---SITALIGPSGCGKSTFL-RTLNRMNDLVEGIKIEG----NVIYEGKNI 76 (254)
T ss_pred ceeecceeeEEcCC---CEEEEECCCCCCHHHHH-HHHhccccCCcCCCCce----EEEECCEec
Confidence 35789999999999 99999999999999999 77777632210 12355 666766543
No 372
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.69 E-value=5.7e-08 Score=71.89 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=45.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
-+++++|..++|||||+.++....+...+.+.. -.. ...+.+++.. .+.+|||+|+++|..++.
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~ 153 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRA 153 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHH
Confidence 689999999999999999988877765543321 111 2244554321 678999999999987654
No 373
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.69 E-value=5.7e-08 Score=64.32 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=40.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+... +.|+.| ++.++|.
T Consensus 14 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~--~~~~~G----~i~~~g~ 65 (248)
T PRK09580 14 KAILRGLNLEVRPG---EVHAIMGPNGSGKSTLS-ATLAGRED--YEVTGG----TVEFKGK 65 (248)
T ss_pred eeeeecceeEEcCC---CEEEEECCCCCCHHHHH-HHHcCCcc--CCCCce----EEEECCC
Confidence 35789999999999 99999999999999999 88887621 235566 5556654
No 374
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.69 E-value=6.5e-08 Score=62.50 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=42.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++++|++|+|||||+ +.+.+... +.|+.| ++.++|.++
T Consensus 13 ~~~l~~is~~i~~G---e~~~i~G~nGsGKStLl-~~l~G~~~--~~p~~G----~i~~~g~~~ 66 (200)
T cd03217 13 KEILKGVNLTIKKG---EVHALMGPNGSGKSTLA-KTIMGHPK--YEVTEG----EILFKGEDI 66 (200)
T ss_pred EEeeeccceEECCC---cEEEEECCCCCCHHHHH-HHHhCCCc--CCCCcc----EEEECCEEC
Confidence 35789999999999 99999999999999999 77777521 246667 677777543
No 375
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.69 E-value=5.2e-08 Score=70.68 Aligned_cols=51 Identities=22% Similarity=0.375 Sum_probs=41.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 18 ~~il~~vs~~i~~G---e~~~liG~nGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~ 68 (510)
T PRK09700 18 VHALKSVNLTVYPG---EIHALLGENGAGKSTLM-KVLSGI----HEPTKG----TITINNIN 68 (510)
T ss_pred eEEeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----cCCCcc----EEEECCEE
Confidence 35789999999999 99999999999999999 888887 346666 55666543
No 376
>KOG0057|consensus
Probab=98.69 E-value=2.3e-08 Score=72.81 Aligned_cols=51 Identities=31% Similarity=0.544 Sum_probs=42.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++++++++++| .|++++|++||||||++ |.+-+.|. ..| ++.+||.++
T Consensus 365 ~~iL~gvsf~I~kG---ekVaIvG~nGsGKSTil-r~LlrF~d-----~sG----~I~IdG~di 415 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKG---EKVAIVGSNGSGKSTIL-RLLLRFFD-----YSG----SILIDGQDI 415 (591)
T ss_pred CceecceeEEecCC---CEEEEECCCCCCHHHHH-HHHHHHhc-----cCC----cEEECCeeH
Confidence 45899999999999 99999999999999999 88877753 234 678888654
No 377
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=6.1e-08 Score=63.77 Aligned_cols=47 Identities=28% Similarity=0.611 Sum_probs=38.7
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.++++.+.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|..
T Consensus 16 ~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~ 62 (232)
T PRK10771 16 MRFDLTVERG---ERVAILGPSGAGKSTLL-NLIAGF----LTPASG----SLTLNGQD 62 (232)
T ss_pred ceeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCee
Confidence 3789999999 99999999999999999 888886 456666 56666654
No 378
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=6.9e-08 Score=64.16 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=42.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+...+ ...|+.| ++.++|..+
T Consensus 17 ~~~l~~~sl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G----~v~i~g~~~ 73 (251)
T PRK14251 17 YEALHGISLDFEEK---ELTALIGPSGCGKSTFL-RCLNRMNDDIENIKITG----EIKFEGQNI 73 (251)
T ss_pred eeeeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhhccccccCCCcce----EEEECCEEc
Confidence 45789999999999 99999999999999999 888876321 0013456 666777543
No 379
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.69 E-value=4.9e-08 Score=71.27 Aligned_cols=52 Identities=33% Similarity=0.514 Sum_probs=44.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+..++++++++.+| .+++++|++|+|||||+ +.+.+. +.|+.| ++.++|.++
T Consensus 331 ~~~l~~~~~~i~~G---~~~~ivG~sGsGKSTL~-~ll~g~----~~~~~G----~i~~~g~~i 382 (544)
T TIGR01842 331 KPTLRGISFRLQAG---EALAIIGPSGSGKSTLA-RLIVGI----WPPTSG----SVRLDGADL 382 (544)
T ss_pred ccccccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEeh
Confidence 35789999999999 99999999999999999 778776 577777 677777654
No 380
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=8e-08 Score=64.24 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=42.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+..... ..|+.| ++.++|..+
T Consensus 25 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G----~i~~~g~~i 81 (258)
T PRK14268 25 KQALKNVSMQIPKN---SVTALIGPSGCGKSTFI-RCLNRMNDLIKNCRIEG----KVSIEGEDI 81 (258)
T ss_pred eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcCCCcccCCCcce----EEEECCEEc
Confidence 35789999999999 99999999999999999 8887763221 113566 677777654
No 381
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=7.5e-08 Score=63.95 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=42.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+...+.. .|+.| ++.++|..+
T Consensus 16 ~~~l~~i~~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G----~i~i~g~~~ 72 (250)
T PRK14262 16 KKAVKNVTMKIFKN---QITAIIGPSGCGKTTLL-RSINRMNDHIPGFRVEG----KIYFKGQDI 72 (250)
T ss_pred ceeEeeeeEeecCC---CEEEEECCCCCCHHHHH-HHHhccccCCCCCCcce----EEEECCEEc
Confidence 35789999999999 99999999999999999 88887632110 13456 666776544
No 382
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.68 E-value=1.1e-07 Score=68.59 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=40.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCC--cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
.+|++||.++||||||+++++.+.+.. ...|. .+.....+.+++. .+.+|||+|++.
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~ 98 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEP 98 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCC
Confidence 689999999999999999999876422 12222 2223445566665 467899999874
No 383
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.68 E-value=8.3e-08 Score=58.75 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=36.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
.++++|++|+|||||++.++.+.+.....++.+ .. ......++ .+.+||+.|..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~ 56 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYG 56 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCcc
Confidence 478999999999999988886665554444422 11 12223333 78899998843
No 384
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.68 E-value=6.5e-08 Score=70.28 Aligned_cols=51 Identities=25% Similarity=0.490 Sum_probs=42.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 24 ~~il~~vsl~i~~G---e~~~liG~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~ 74 (510)
T PRK15439 24 VEVLKGIDFTLHAG---EVHALLGGNGAGKSTLM-KIIAGI----VPPDSG----TLEIGGNP 74 (510)
T ss_pred ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEE
Confidence 35789999999999 99999999999999999 888886 456667 56666654
No 385
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.68 E-value=7.9e-08 Score=64.25 Aligned_cols=49 Identities=27% Similarity=0.454 Sum_probs=40.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g 68 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.+++
T Consensus 17 ~~vl~~vs~~i~~G---e~~~I~G~NGsGKSTLl-~~i~Gl----~~p~~G----~i~~~~ 65 (251)
T PRK09544 17 RRVLSDVSLELKPG---KILTLLGPNGAGKSTLV-RVVLGL----VAPDEG----VIKRNG 65 (251)
T ss_pred ceEEEeEEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECC
Confidence 35789999999999 99999999999999999 788876 356666 555655
No 386
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.68 E-value=5e-08 Score=71.64 Aligned_cols=52 Identities=25% Similarity=0.354 Sum_probs=44.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++++++++.+| .+++++|++|+|||||+ +.+.+. +.|+.| ++.++|.++
T Consensus 328 ~~~l~~i~~~i~~G---~~~~ivG~sGsGKSTLl-~ll~g~----~~p~~G----~i~~~g~~~ 379 (569)
T PRK10789 328 HPALENVNFTLKPG---QMLGICGPTGSGKSTLL-SLIQRH----FDVSEG----DIRFHDIPL 379 (569)
T ss_pred CccccCeeEEECCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCC----EEEECCEEH
Confidence 35789999999999 99999999999999999 878776 678877 677777654
No 387
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.68 E-value=4.9e-08 Score=71.46 Aligned_cols=51 Identities=22% Similarity=0.422 Sum_probs=43.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.++++.++++.+| .+++++|++|+|||||+ +.+.+. +.|+.| ++.+||.++
T Consensus 354 ~iL~~inl~i~~G---e~i~IvG~sGsGKSTLl-klL~gl----~~p~~G----~I~i~g~~i 404 (576)
T TIGR02204 354 PALDGLNLTVRPG---ETVALVGPSGAGKSTLF-QLLLRF----YDPQSG----RILLDGVDL 404 (576)
T ss_pred ccccceeEEecCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCC----EEEECCEEH
Confidence 4789999999999 99999999999999999 777776 677777 677887654
No 388
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.68 E-value=1.8e-07 Score=61.98 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=37.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC-CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAF-LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f-~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
+++++|++|||||||++++.+... ...++.+ .......+.+++ ..+++||++|+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccc
Confidence 789999999999999977776432 1122222 222233555665 56789999998654
No 389
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.68 E-value=5.3e-08 Score=72.91 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=45.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| .+++++|++|+|||||+ +.+.+. +.|+.| ++.+||.++
T Consensus 470 ~~il~~i~l~i~~G---~~vaivG~sGsGKSTL~-~ll~g~----~~p~~G----~I~idg~~i 521 (694)
T TIGR01846 470 PEVLSNLNLDIKPG---EFIGIVGPSGSGKSTLT-KLLQRL----YTPQHG----QVLVDGVDL 521 (694)
T ss_pred ccccccceEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEeh
Confidence 34789999999999 99999999999999999 888887 678888 788888765
No 390
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.68 E-value=4.7e-08 Score=71.44 Aligned_cols=52 Identities=27% Similarity=0.499 Sum_probs=44.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| .+++++|++|+|||||+ +.+.+. +.|..| .+.+||.++
T Consensus 345 ~~il~~inl~i~~G---~~v~IvG~sGsGKSTLl-~lL~gl----~~~~~G----~I~i~g~~i 396 (571)
T TIGR02203 345 RPALDSISLVIEPG---ETVALVGRSGSGKSTLV-NLIPRF----YEPDSG----QILLDGHDL 396 (571)
T ss_pred CccccCeeEEecCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCC----eEEECCEeH
Confidence 34789999999999 99999999999999999 878777 677777 778888654
No 391
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.67 E-value=1.2e-07 Score=67.17 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=38.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
+++++|.++||||||+++++.... ...+..+ .+.....+.+++. .+.+|||+|.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCC
Confidence 589999999999999999988653 2222222 2323445667765 57899999964
No 392
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.67 E-value=4e-08 Score=63.97 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=39.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCC-----------CCCC------cc-ee-EE--EEEE---CCeEEEEEEEecCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQE-----------ESPE------GG-RF-KK--EVVI---DGHSHLLLIRDEGVP 81 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~-----------~~~t------~~-~~-~~--~~~~---~g~~i~~~i~d~~g~ 81 (93)
+++++|..|+|||||+.+++...+... +..+ .+ .+ .. .+.+ ++..+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987554321 0011 00 01 11 1112 356789999999999
Q ss_pred CCCC
Q psy6968 82 PELQ 85 (93)
Q Consensus 82 ~~~~ 85 (93)
++|.
T Consensus 82 ~~f~ 85 (213)
T cd04167 82 VNFM 85 (213)
T ss_pred cchH
Confidence 9884
No 393
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=8.8e-08 Score=64.02 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=42.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+.... ...++.| ++.++|..+
T Consensus 25 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~~~~~p~~~~~G----~i~~~g~~~ 81 (259)
T PRK14274 25 HHALKNINLSIPEN---EVTAIIGPSGCGKSTFI-KTLNLMIQMVPNVKLTG----EMNYNGSNI 81 (259)
T ss_pred eeeEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 777775321 0012355 677777654
No 394
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=8.3e-08 Score=63.74 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=42.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+..... ..++.| ++.++|..+
T Consensus 16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~~ 72 (250)
T PRK14240 16 FQALKKINLDIEEN---QVTALIGPSGCGKSTFL-RTLNRMNDLIPSVKIEG----EVLLDGQDI 72 (250)
T ss_pred ceeeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccccCCCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 7787753210 012456 677777654
No 395
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.67 E-value=6.3e-08 Score=69.95 Aligned_cols=51 Identities=16% Similarity=0.334 Sum_probs=42.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..
T Consensus 11 ~~il~~vs~~i~~G---e~~~liG~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~ 61 (491)
T PRK10982 11 VKALDNVNLKVRPH---SIHALMGENGAGKSTLL-KCLFGI----YQKDSG----SILFQGKE 61 (491)
T ss_pred EEeeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCce----EEEECCEE
Confidence 35789999999999 99999999999999999 888886 356666 56666654
No 396
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.67 E-value=6.5e-08 Score=70.90 Aligned_cols=51 Identities=27% Similarity=0.440 Sum_probs=44.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| .+++++|++|+|||||+ +.+.+. +.|+.| ++.+||.++
T Consensus 356 ~~l~~vs~~i~~G---~~~aivG~sGsGKSTl~-~ll~g~----~~p~~G----~i~~~g~~i 406 (555)
T TIGR01194 356 FALGPIDLRIAQG---DIVFIVGENGCGKSTLA-KLFCGL----YIPQEG----EILLDGAAV 406 (555)
T ss_pred ceeccceEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence 4789999999999 99999999999999999 777776 678878 777887654
No 397
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.67 E-value=7.4e-08 Score=66.81 Aligned_cols=54 Identities=31% Similarity=0.428 Sum_probs=42.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|+|||||+ +.+.+...... .+.| ++.++|..+
T Consensus 30 ~~l~~vsl~i~~G---e~~~ivG~sGsGKSTL~-~~l~Gl~~p~~-~~sG----~I~~~G~~i 83 (330)
T PRK09473 30 TAVNDLNFSLRAG---ETLGIVGESGSGKSQTA-FALMGLLAANG-RIGG----SATFNGREI 83 (330)
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCchHHHHH-HHHHcCCCCCC-CCCe----EEEECCEEC
Confidence 4789999999999 99999999999999999 77877742210 1256 677777654
No 398
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.67 E-value=1.6e-07 Score=66.57 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=43.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
..+++++|.+++|||||+++++.... ..++..+ .+.+...+..++. .+.+|||+|+.++..+
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~ 236 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKV 236 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccc
Confidence 47999999999999999999887542 2223333 2323344556665 6789999998776543
No 399
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=8.5e-08 Score=64.41 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=42.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFL-QEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~-~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+... ..+.|..| ++.++|..+
T Consensus 34 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~i 90 (268)
T PRK14248 34 KRAVNDISMDIEKH---AVTALIGPSGCGKSTFL-RSINRMNDLIPSARSEG----EILYEGLNI 90 (268)
T ss_pred ceeeeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhcccccCCCCCce----EEEECCEEc
Confidence 45789999999999 99999999999999999 77777531 11124566 566676544
No 400
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.66 E-value=9.1e-08 Score=62.22 Aligned_cols=50 Identities=24% Similarity=0.499 Sum_probs=40.7
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+.++++.+.+| ..++++|++|+|||||+ +.+.+. ..|..| ++.++|..+
T Consensus 13 ~~~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~ 62 (213)
T TIGR01277 13 LPMEFDLNVADG---EIVAIMGPSGAGKSTLL-NLIAGF----IEPASG----SIKVNDQSH 62 (213)
T ss_pred cceeeEEEEeCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEc
Confidence 356899999999 99999999999999999 777776 456667 666776543
No 401
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.66 E-value=5.5e-08 Score=70.46 Aligned_cols=52 Identities=31% Similarity=0.523 Sum_probs=42.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 265 ~~~l~~vsl~i~~G---e~~~liG~NGsGKSTLl-~~l~G~----~~p~~G----~I~~~g~~i 316 (501)
T PRK10762 265 GPGVNDVSFTLRKG---EILGVSGLMGAGRTELM-KVLYGA----LPRTSG----YVTLDGHEV 316 (501)
T ss_pred cCCcccceEEEcCC---cEEEEecCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 34589999999999 99999999999999999 877776 356667 667776543
No 402
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.1e-07 Score=63.17 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=42.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+.... ...|+.| ++.++|..+
T Consensus 17 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~v~~~g~~i 73 (252)
T PRK14256 17 NHAVKDVSMDFPEN---SVTAIIGPSGCGKSTVL-RSINRMHDLVPSARVTG----KILLDDTDI 73 (252)
T ss_pred eeEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHHhcccCCCCCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 778776321 0012456 566777544
No 403
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1e-07 Score=63.42 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=42.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+...... .++.| ++.++|..+
T Consensus 17 ~~il~~~s~~i~~G---~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~v~~~g~~~ 73 (251)
T PRK14249 17 HQVLKNINMDFPER---QITAIIGPSGCGKSTLL-RALNRMNDIVSGARLEG----AVLLDNENI 73 (251)
T ss_pred eeEecceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcccCccccCCccc----EEEECCEEc
Confidence 35789999999999 99999999999999999 77877643221 12245 566666543
No 404
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.66 E-value=9.2e-08 Score=65.10 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=41.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g 68 (93)
+.+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|
T Consensus 50 ~~vL~~vs~~i~~G---e~~~liG~NGsGKSTLl-~~I~Gl----~~p~~G----~I~i~g 98 (282)
T cd03291 50 APVLKNINLKIEKG---EMLAITGSTGSGKTSLL-MLILGE----LEPSEG----KIKHSG 98 (282)
T ss_pred ccceeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECC
Confidence 45789999999999 99999999999999999 777776 456667 566666
No 405
>KOG0055|consensus
Probab=98.66 E-value=4.3e-08 Score=76.66 Aligned_cols=52 Identities=27% Similarity=0.491 Sum_probs=47.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+++| ..+++||++||||||++ +++.+. |+|+.| ++.+||.++
T Consensus 366 v~Il~g~sl~i~~G---~~valVG~SGsGKST~i-~LL~Rf----ydP~~G----~V~idG~di 417 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSG---QTVALVGPSGSGKSTLI-QLLARF----YDPTSG----EVLIDGEDI 417 (1228)
T ss_pred chhhCCeEEEeCCC---CEEEEECCCCCCHHHHH-HHHHHh----cCCCCc----eEEEcCccc
Confidence 46789999999999 99999999999999999 888887 899988 889998766
No 406
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=9.1e-08 Score=63.55 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=41.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEES-PEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~-~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+...+... ...| ++.++|..+
T Consensus 17 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~~ 73 (252)
T PRK14272 17 KQAVKNVNLDVQRG---TVNALIGPSGCGKTTFL-RAINRMHDLTPGARVTG----RILLDGQDI 73 (252)
T ss_pred EEeeccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCce----eEEECCEEc
Confidence 35789999999999 99999999999999999 888876321100 0245 666776543
No 407
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.3e-08 Score=64.58 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=45.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++.+++++..| ..-+++||+|+|||||. ..+.+. +.|.+|.| ++.++|+.+
T Consensus 17 keILkgvnL~v~~G---EvhaiMGPNGsGKSTLa-~~i~G~--p~Y~Vt~G----~I~~~GedI 70 (251)
T COG0396 17 KEILKGVNLTVKEG---EVHAIMGPNGSGKSTLA-YTIMGH--PKYEVTEG----EILFDGEDI 70 (251)
T ss_pred hhhhcCcceeEcCC---cEEEEECCCCCCHHHHH-HHHhCC--CCceEecc----eEEECCccc
Confidence 47899999999999 99999999999999999 445554 34788888 788998865
No 408
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=9.8e-08 Score=64.07 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=42.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+...+. ..|..| ++.++|..+
T Consensus 21 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G----~i~~~g~~i 77 (261)
T PRK14263 21 FMAVRDSHVPIRKN---EITGFIGPSGCGKSTVL-RSLNRMNDLVKGFRFEG----HVHFLGQDV 77 (261)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcccccccCCCCce----EEEECCEec
Confidence 35789999999999 99999999999999999 7787763210 012345 677777654
No 409
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.3e-07 Score=62.92 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=41.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+...... .++.| ++.++|.++
T Consensus 19 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~~ 75 (253)
T PRK14261 19 KHALYDITISIPKN---RVTALIGPSGCGKSTLL-RCFNRMNDLIPGCRITG----DILYNGENI 75 (253)
T ss_pred eeeeeeeEEEECCC---cEEEEECCCCCCHHHHH-HHHhccccCCCCCCcce----EEEECCEEc
Confidence 35789999999999 99999999999999999 88877532110 01345 566776544
No 410
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=7.9e-08 Score=64.57 Aligned_cols=49 Identities=22% Similarity=0.431 Sum_probs=39.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
.+++++++.+.+| ..+.++||||+|||||+ +.+-+. ..|..| ++.+.|+
T Consensus 18 ~vl~~i~l~v~~G---~~~~iiGPNGaGKSTLl-K~iLGl----l~p~~G----~i~~~g~ 66 (254)
T COG1121 18 PVLEDISLSVEKG---EITALIGPNGAGKSTLL-KAILGL----LKPSSG----EIKIFGK 66 (254)
T ss_pred eeeeccEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CcCCcc----eEEEccc
Confidence 5899999999999 99999999999999999 666665 356655 4444443
No 411
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=1.5e-07 Score=58.52 Aligned_cols=51 Identities=35% Similarity=0.540 Sum_probs=41.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.++++.++.+.++ ..++++|++|+|||||+ +.+.+. +.|..+ ++.+++..+
T Consensus 13 ~~l~~~~~~i~~g---~~~~i~G~nGsGKStll-~~l~g~----~~~~~G----~i~~~~~~~ 63 (157)
T cd00267 13 TALDNVSLTLKAG---EIVALVGPNGSGKSTLL-RAIAGL----LKPTSG----EILIDGKDI 63 (157)
T ss_pred eeEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCcc----EEEECCEEc
Confidence 5789999999999 99999999999999999 777776 345566 667777543
No 412
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=7.2e-08 Score=71.84 Aligned_cols=50 Identities=24% Similarity=0.477 Sum_probs=42.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
+.+++++++.+.+| .+++++|++|+|||||+ +.+.+. ..|+.| .+.+++.
T Consensus 14 ~~~l~~vs~~i~~G---e~v~LvG~NGsGKSTLL-kiL~G~----~~pd~G----~I~~~~~ 63 (638)
T PRK10636 14 RVLLDNATATINPG---QKVGLVGKNGCGKSTLL-ALLKNE----ISADGG----SYTFPGN 63 (638)
T ss_pred ceeecCcEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEecCC
Confidence 45789999999999 99999999999999999 888886 456677 5666653
No 413
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.65 E-value=1.5e-07 Score=63.40 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=37.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQ--EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
+++++|.++||||||++++++..+.. ..+.|.......+..++ ..++.+|||+|....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCC
Confidence 68999999999999998888765431 12223222222233222 246789999997643
No 414
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.65 E-value=1.3e-07 Score=66.21 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=39.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EE-SPEGGRFKKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~-~~t~~~~~~~~~~~g~~i~~~i~d~~g~ 81 (93)
.+++++|.++||||||++++++..+.. .+ .+|.+.....+.+.+. ..+.+|||+|+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~ 247 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGF 247 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcc
Confidence 799999999999999999988765432 22 2333333445666322 36789999997
No 415
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.65 E-value=1e-07 Score=67.34 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=42.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
...++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|+
T Consensus 37 ~~~l~~vsf~i~~G---ei~~I~G~nGsGKSTLl-r~L~Gl----~~p~~G----~I~idG~ 86 (382)
T TIGR03415 37 VVGVANASLDIEEG---EICVLMGLSGSGKSSLL-RAVNGL----NPVSRG----SVLVKDG 86 (382)
T ss_pred EEEEEeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCc----EEEECCE
Confidence 34589999999999 99999999999999999 888887 567777 6777774
No 416
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.65 E-value=6.7e-08 Score=62.71 Aligned_cols=52 Identities=23% Similarity=0.510 Sum_probs=42.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++.+.++ ..+.++|++|+|||||+ +++.+. ..||.| .+.++|.++
T Consensus 15 ~~aL~~vs~~i~~G---ef~fl~GpSGAGKSTll-kLi~~~----e~pt~G----~i~~~~~dl 66 (223)
T COG2884 15 REALRDVSFHIPKG---EFVFLTGPSGAGKSTLL-KLIYGE----ERPTRG----KILVNGHDL 66 (223)
T ss_pred chhhhCceEeecCc---eEEEEECCCCCCHHHHH-HHHHhh----hcCCCc----eEEECCeec
Confidence 44688999999999 99999999999999999 777665 578877 566665543
No 417
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.65 E-value=9e-08 Score=69.34 Aligned_cols=50 Identities=24% Similarity=0.512 Sum_probs=41.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..
T Consensus 18 ~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~~ 67 (501)
T PRK11288 18 KALDDISFDCRAG---QVHALMGENGAGKSTLL-KILSGN----YQPDAG----SILIDGQE 67 (501)
T ss_pred EEEeeeeEEEeCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEE
Confidence 4789999999999 99999999999999999 888886 456666 55666543
No 418
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=9.4e-08 Score=63.56 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=42.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+.... ...|..| ++.++|..+
T Consensus 18 ~~~l~~is~~i~~G---e~~~I~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~i 74 (251)
T PRK14244 18 KQILFDINLDIYKR---EVTAFIGPSGCGKSTFL-RCFNRMNDFVPNCKVKG----ELDIDGIDV 74 (251)
T ss_pred eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhcccCCCCCcce----EEEECCEeh
Confidence 35789999999999 99999999999999999 778776321 0113456 566766543
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.64 E-value=1.5e-07 Score=60.20 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=39.6
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL 72 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~ 72 (93)
++.+ .+.+.++ ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+.
T Consensus 15 ~l~~-~~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i~ 64 (177)
T cd03222 15 LLVE-LGVVKEG---EVIGIVGPNGTGKTTAV-KILAGQ----LIPNGD----NDEWDGITPV 64 (177)
T ss_pred EEcc-CcEECCC---CEEEEECCCCChHHHHH-HHHHcC----CCCCCc----EEEECCEEEE
Confidence 3444 3678888 99999999999999999 888887 467777 6778876543
No 420
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.64 E-value=4.7e-08 Score=62.44 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=34.9
Q ss_pred CcCCCCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 2 KMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
++.......++++++++.++ ..++++|++|||||||+ +.+
T Consensus 2 ~~~~~~~~~l~~isl~i~~G---~~~~l~G~nG~GKSTLl-~~i 41 (176)
T cd03238 2 TVSGANVHNLQNLDVSIPLN---VLVVVTGVSGSGKSTLV-NEG 41 (176)
T ss_pred eecceeeeeecceEEEEcCC---CEEEEECCCCCCHHHHH-HHH
Confidence 34556678899999999999 99999999999999999 555
No 421
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=9.4e-08 Score=65.76 Aligned_cols=51 Identities=29% Similarity=0.533 Sum_probs=45.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++.+.+| ..++++|.+|+|||||+ |+++.. ..|+.| .+.++|.++
T Consensus 20 ~al~~vsL~I~~G---eI~GIIG~SGAGKSTLi-R~iN~L----e~PtsG----~v~v~G~di 70 (339)
T COG1135 20 TALDDVSLEIPKG---EIFGIIGYSGAGKSTLL-RLINLL----ERPTSG----SVFVDGQDL 70 (339)
T ss_pred eeeccceEEEcCC---cEEEEEcCCCCcHHHHH-HHHhcc----CCCCCc----eEEEcCEec
Confidence 4578999999999 99999999999999999 999987 578888 788888654
No 422
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.64 E-value=1.6e-07 Score=57.59 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=36.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i~~~i~d~~g~ 81 (93)
.+++++|.+|+||||++++++......-- .+....+...+.+++ .+.+|||+|-
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 38999999999999999888876643211 111222334555655 5789999984
No 423
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=7.1e-08 Score=63.62 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=42.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+.++++++.+.++ .-.+++||+|||||||+ |.+++-... + | ......++.++|+++
T Consensus 20 ~~aL~~i~l~i~~~---~VTAlIGPSGcGKST~L-R~lNRmndl-~-~-~~r~~G~v~~~g~ni 76 (253)
T COG1117 20 KHALKDINLDIPKN---KVTALIGPSGCGKSTLL-RCLNRMNDL-I-P-GARVEGEVLLDGKNI 76 (253)
T ss_pred hhhhccCceeccCC---ceEEEECCCCcCHHHHH-HHHHhhccc-C-c-CceEEEEEEECCeec
Confidence 56689999999888 78899999999999999 877754221 1 1 112344788888766
No 424
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.5e-07 Score=62.54 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=41.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC---CcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP---EGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~---t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+... ..| +.| ++.++|..+
T Consensus 18 ~~~l~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~--~~p~~~~~G----~i~~~g~~~ 74 (252)
T PRK14239 18 KKALNSVSLDFYPN---EITALIGPSGSGKSTLL-RSINRMND--LNPEVTITG----SIVYNGHNI 74 (252)
T ss_pred eeeeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhcccc--cCCCCCccc----eEEECCEEC
Confidence 35789999999999 99999999999999999 77776521 113 356 566666544
No 425
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.2e-07 Score=63.07 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=42.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+..... ..|+.| ++.++|..+
T Consensus 17 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G----~i~~~g~~i 73 (251)
T PRK14270 17 KQALNDINLPIYEN---KITALIGPSGCGKSTFL-RCLNRMNDLISNVKIEG----EVLLDGKNI 73 (251)
T ss_pred eeeeeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHHhccCcccCCCCcc----EEEECCEec
Confidence 35789999999999 99999999999999999 7777763210 012456 667777654
No 426
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.63 E-value=8.5e-08 Score=69.57 Aligned_cols=50 Identities=28% Similarity=0.569 Sum_probs=41.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|+.
T Consensus 277 ~~l~~isl~i~~G---e~~~l~G~NGsGKSTLl-k~i~Gl----~~p~~G----~I~~~g~~ 326 (510)
T PRK09700 277 KKVRDISFSVCRG---EILGFAGLVGSGRTELM-NCLFGV----DKRAGG----EIRLNGKD 326 (510)
T ss_pred CcccceeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CcCCCC----eEEECCEE
Confidence 4689999999999 99999999999999999 888776 356666 56666654
No 427
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.63 E-value=9.5e-08 Score=71.11 Aligned_cols=49 Identities=20% Similarity=0.471 Sum_probs=41.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g 68 (93)
..+++++++.+.+| .+++++|++|+|||||+ +.+.+. ..|+.| ++.+++
T Consensus 16 ~~il~~is~~i~~G---e~v~LvG~NGsGKSTLL-riiaG~----~~p~~G----~I~~~~ 64 (635)
T PRK11147 16 APLLDNAELHIEDN---ERVCLVGRNGAGKSTLM-KILNGE----VLLDDG----RIIYEQ 64 (635)
T ss_pred ceeEeCcEEEECCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCCe----EEEeCC
Confidence 45789999999999 99999999999999999 888886 456667 566665
No 428
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.1e-07 Score=70.63 Aligned_cols=51 Identities=29% Similarity=0.408 Sum_probs=42.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|||||||+ +.+.+. ..|+.| .+.++|..+
T Consensus 338 ~~l~~vs~~i~~G---e~~~lvG~nGsGKSTLl-k~i~Gl----~~p~~G----~I~~~g~~i 388 (623)
T PRK10261 338 HAVEKVSFDLWPG---ETLSLVGESGSGKSTTG-RALLRL----VESQGG----EIIFNGQRI 388 (623)
T ss_pred EEEeeeEeEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCc----EEEECCEEC
Confidence 5789999999999 99999999999999999 878776 356777 667776543
No 429
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.63 E-value=1.6e-07 Score=70.86 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=42.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
.+++++|.++||||||+++++.... ..++.++ .+.+...+.+++..+ .+|||+|..
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~--~liDTaG~~ 509 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDW--LFIDTAGIK 509 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEE--EEEECCCcc
Confidence 7999999999999999999998763 3445444 333445667787654 589999964
No 430
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.4e-07 Score=63.24 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=37.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
...++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|..|
T Consensus 23 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~iaG~----~~~~~G 65 (257)
T PRK14246 23 KAILKDITIKIPNN---SIFGIMGPSGSGKSTLL-KVLNRL----IEIYDS 65 (257)
T ss_pred ceeEeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCcC
Confidence 45689999999999 99999999999999999 888886 455554
No 431
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.63 E-value=9.7e-08 Score=63.73 Aligned_cols=53 Identities=32% Similarity=0.584 Sum_probs=44.6
Q ss_pred CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+.++.++++++.+| .-++++|++|+|||+|+ |.+.+. ..|+.| ++.++|.++
T Consensus 20 ~~~Ild~v~l~V~~G---ei~~iiGgSGsGKStlL-r~I~Gl----l~P~~G----eI~i~G~~i 72 (263)
T COG1127 20 DRVILDGVDLDVPRG---EILAILGGSGSGKSTLL-RLILGL----LRPDKG----EILIDGEDI 72 (263)
T ss_pred CEEEecCceeeecCC---cEEEEECCCCcCHHHHH-HHHhcc----CCCCCC----eEEEcCcch
Confidence 366789999999999 99999999999999999 888887 467777 677777653
No 432
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=1e-07 Score=69.17 Aligned_cols=52 Identities=17% Similarity=0.431 Sum_probs=40.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+..+. .|+.| .+.++|..
T Consensus 19 ~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl~~~--~~~~G----~i~~~g~~ 70 (506)
T PRK13549 19 KALDNVSLKVRAG---EIVSLCGENGAGKSTLM-KVLSGVYPH--GTYEG----EIIFEGEE 70 (506)
T ss_pred EeecceeEEEeCC---eEEEEECCCCCCHHHHH-HHHhCCCCC--CCCCe----EEEECCEE
Confidence 4789999999999 99999999999999999 888887321 12566 56666643
No 433
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.4e-07 Score=64.18 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=41.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCC--CCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEES--PEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~--~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+.... .+ |+.| ++.++|..+
T Consensus 53 ~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~L~Gl~~~-~p~~~~~G----~I~~~g~~i 108 (286)
T PRK14275 53 EAVKKVNADILSK---YVTAIIGPSGCGKSTFL-RAINRMNDL-IPSCHTTG----ALMFDGEDI 108 (286)
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccc-CCCCCCce----EEEECCEEh
Confidence 4789999999999 99999999999999999 777775210 11 3566 677777644
No 434
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.4e-07 Score=63.78 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=42.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++++++++.++ ..++|+|++|+|||||+ +.+.+...+. ..|..| ++.++|..+
T Consensus 34 ~~il~~vs~~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G----~i~~~g~~i 90 (276)
T PRK14271 34 KTVLDQVSMGFPAR---AVTSLMGPTGSGKTTFL-RTLNRMNDKVSGYRYSG----DVLLGGRSI 90 (276)
T ss_pred EEEeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhccCCcCCCCCCce----EEEECCEEc
Confidence 45689999999999 99999999999999999 7777763211 013455 667777544
No 435
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.61 E-value=1.2e-07 Score=69.06 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=43.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+..+. .+.|+.| ++.++|..+
T Consensus 23 ~~l~~isl~i~~G---e~~~iiG~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~i 78 (529)
T PRK15134 23 TVVNDVSLQIEAG---ETLALVGESGSGKSVTA-LSILRLLPSPPVVYPSG----DIRFHGESL 78 (529)
T ss_pred eeeeceEEEEeCC---CEEEEECCCCCcHHHHH-HHHhcCCCCCcCCccce----EEEECCEec
Confidence 5789999999999 99999999999999999 888877432 1123456 677777654
No 436
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.61 E-value=1e-07 Score=70.30 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=43.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++.++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 349 ~~l~~i~~~i~~G---~~~~ivG~sGsGKSTL~-~ll~g~----~~~~~G----~i~~~g~~~ 399 (585)
T TIGR01192 349 QGVFDVSFEAKAG---QTVAIVGPTGAGKTTLI-NLLQRV----YDPTVG----QILIDGIDI 399 (585)
T ss_pred ccccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHccC----CCCCCC----EEEECCEEh
Confidence 4689999999999 99999999999999999 778776 577777 677777654
No 437
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=1.9e-07 Score=62.10 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=41.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+..... ..++.| ++.++|..+
T Consensus 18 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~~ 74 (252)
T PRK14255 18 FEALKGIDLDFNQN---EITALIGPSGCGKSTYL-RTLNRMNDLIPGVTITG----NVSLRGQNI 74 (252)
T ss_pred eeEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcccccCCCCCccc----EEEEcCEEc
Confidence 35789999999999 99999999999999999 8887753210 112356 566776544
No 438
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=1.2e-07 Score=69.13 Aligned_cols=49 Identities=22% Similarity=0.492 Sum_probs=40.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g 68 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.+++
T Consensus 14 ~~il~~vsl~i~~G---e~~~liG~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~~ 62 (530)
T PRK15064 14 KPLFENISVKFGGG---NRYGLIGANGCGKSTFM-KILGGD----LEPSAG----NVSLDP 62 (530)
T ss_pred cEeEeCCEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEecC
Confidence 45789999999999 99999999999999999 888886 345666 555554
No 439
>KOG0055|consensus
Probab=98.61 E-value=5.3e-08 Score=76.13 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=46.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..+++||++||||||++ .++.+. |+|..| .+.+||.++
T Consensus 1003 ~~Il~~l~l~i~~G---qTvALVG~SGsGKSTvI-~LLeRf----Ydp~~G----~V~IDg~di 1054 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAG---QTVALVGPSGSGKSTVI-SLLERF----YDPDAG----KVKIDGVDI 1054 (1228)
T ss_pred chhhcCCcEEecCC---CEEEEECCCCCCHHHHH-HHHHHh----cCCCCC----eEEECCccc
Confidence 55689999999999 99999999999999999 888877 899988 889998776
No 440
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.61 E-value=1.3e-07 Score=63.42 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=41.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+..... ..|+.| ++.++|..+
T Consensus 23 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~i 79 (264)
T PRK14243 23 FLAVKNVWLDIPKN---QITAFIGPSGCGKSTIL-RCFNRLNDLIPGFRVEG----KVTFHGKNL 79 (264)
T ss_pred EEEeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhhcccCCCCCce----EEEECCEEc
Confidence 35689999999999 99999999999999999 7777652110 013455 566676544
No 441
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.61 E-value=9.9e-08 Score=68.89 Aligned_cols=49 Identities=29% Similarity=0.247 Sum_probs=40.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.+++.
T Consensus 17 ~il~~vsl~i~~G---e~~~liG~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~~~ 65 (490)
T PRK10938 17 KTLQLPSLTLNAG---DSWAFVGANGSGKSALA-RALAGE----LPLLSG----ERQSQFS 65 (490)
T ss_pred eecccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCc----eEEECCc
Confidence 4789999999999 99999999999999999 888886 346666 4455443
No 442
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.61 E-value=1e-07 Score=69.09 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=41.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|..| .+.++|+.+
T Consensus 267 ~~l~~isl~i~~G---e~~~iiG~NGsGKSTLl-k~l~G~----~~p~~G----~i~~~g~~~ 317 (501)
T PRK11288 267 GLREPISFSVRAG---EIVGLFGLVGAGRSELM-KLLYGA----TRRTAG----QVYLDGKPI 317 (501)
T ss_pred CcccceeEEEeCC---cEEEEEcCCCCCHHHHH-HHHcCC----CcCCCc----eEEECCEEC
Confidence 3679999999999 99999999999999999 777776 356666 566666543
No 443
>PLN03232 ABC transporter C family member; Provisional
Probab=98.61 E-value=9.5e-08 Score=76.67 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=45.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| .|+++||++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 1249 ~~vL~~isl~I~~G---ekvaIVG~SGSGKSTL~-~lL~rl----~~p~~G----~I~IdG~di 1300 (1495)
T PLN03232 1249 PPVLHGLSFFVSPS---EKVGVVGRTGAGKSSML-NALFRI----VELEKG----RIMIDDCDV 1300 (1495)
T ss_pred CcccccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CcCCCc----eEEECCEEh
Confidence 35789999999999 99999999999999999 777776 678888 889998765
No 444
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.60 E-value=1.5e-07 Score=65.81 Aligned_cols=48 Identities=25% Similarity=0.475 Sum_probs=39.7
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| .+.++|..+
T Consensus 15 ~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~iaGl----~~p~~G----~I~~~g~~~ 62 (352)
T PRK11144 15 LTVNLTLPAQ---GITAIFGRSGAGKTSLI-NAISGL----TRPQKG----RIVLNGRVL 62 (352)
T ss_pred EEEEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence 3789999999 99999999999999999 888886 456677 667777544
No 445
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.60 E-value=1.5e-07 Score=65.81 Aligned_cols=47 Identities=34% Similarity=0.652 Sum_probs=39.5
Q ss_pred eceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 15 ~isl~i~~G---ei~~l~G~nGsGKSTLl-~~iaGl----~~p~~G----~I~~~g~~i 61 (354)
T TIGR02142 15 DADFTLPGQ---GVTAIFGRSGSGKTTLI-RLIAGL----TRPDEG----EIVLNGRTL 61 (354)
T ss_pred EEEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 789999999 89999999999999999 888887 456677 667777654
No 446
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=1.5e-07 Score=62.42 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=41.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+..... ..|..| ++.++|..+
T Consensus 16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~v~~~g~~~ 72 (249)
T PRK14253 16 NQALKSINLPIPAR---QVTALIGPSGCGKSTLL-RCLNRMNDLIEGVKITG----KLTMDGEDI 72 (249)
T ss_pred eeeeecceEEecCC---CEEEEECCCCCCHHHHH-HHHHhhcccccCCCCce----EEEECCEEc
Confidence 35789999999999 99999999999999999 7777763221 112345 566666543
No 447
>PLN03130 ABC transporter C family member; Provisional
Probab=98.60 E-value=1.2e-07 Score=76.67 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=45.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| .|+++||++|+|||||+ +.+.+. |+|+.| ++.+||.++
T Consensus 1253 ~VL~~is~~I~~G---ekVaIVGrSGSGKSTLl-~lL~rl----~~p~~G----~I~IDG~dI 1303 (1622)
T PLN03130 1253 PVLHGLSFEISPS---EKVGIVGRTGAGKSSML-NALFRI----VELERG----RILIDGCDI 1303 (1622)
T ss_pred ceecceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCc----CCCCCc----eEEECCEec
Confidence 5789999999999 99999999999999999 777777 678888 889999765
No 448
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.60 E-value=1.3e-07 Score=68.42 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=41.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| .+.++|+.+
T Consensus 262 ~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i 312 (491)
T PRK10982 262 PSIRDVSFDLHKG---EILGIAGLVGAKRTDIV-ETLFGI----REKSAG----TITLHGKKI 312 (491)
T ss_pred cccceeeEEEeCC---cEEEEecCCCCCHHHHH-HHHcCC----CcCCcc----EEEECCEEC
Confidence 4689999999999 99999999999999999 777776 356666 566666543
No 449
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.60 E-value=1e-07 Score=62.94 Aligned_cols=52 Identities=29% Similarity=0.553 Sum_probs=42.3
Q ss_pred CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
-+++++++++++.+| .-++++|+||+|||||+ +.+.+.+ .|..| ++.++|..
T Consensus 13 Gr~ll~~vsl~~~pG---ev~ailGPNGAGKSTlL-k~LsGel----~p~~G----~v~~~g~~ 64 (259)
T COG4559 13 GRRLLDGVSLDLRPG---EVLAILGPNGAGKSTLL-KALSGEL----SPDSG----EVTLNGVP 64 (259)
T ss_pred cceeccCcceeccCC---cEEEEECCCCccHHHHH-HHhhCcc----CCCCC----eEeeCCcC
Confidence 367789999999999 99999999999999999 7777763 56666 56666643
No 450
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.59 E-value=1.8e-07 Score=63.02 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=42.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+.... ...|+.| ++.++|..+
T Consensus 38 ~~il~~vs~~i~~G---e~~~I~G~nGsGKSTLl-~~laGl~~~~~~~~~~G----~i~i~g~~i 94 (272)
T PRK14236 38 KQALFDISMRIPKN---RVTAFIGPSGCGKSTLL-RCFNRMNDLVDNCRIEG----EIRLDGQNI 94 (272)
T ss_pred eeEeeeEEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhcCCCccCCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 778776421 0113556 566776544
No 451
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2.2e-07 Score=61.89 Aligned_cols=52 Identities=27% Similarity=0.539 Sum_probs=43.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++.+.++ ..++++|++|+|||||+ +.+++. ..|+.| .+.++|..+
T Consensus 17 ~~~l~~v~~~i~~G---e~~~i~G~nGsGKSTL~-~~l~GL----l~p~~G----~v~~~g~~~ 68 (235)
T COG1122 17 KAALKDVSLEIEKG---ERVLLIGPNGSGKSTLL-KLLNGL----LKPTSG----EVLVDGLDT 68 (235)
T ss_pred ceeeeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHcCc----CcCCCC----EEEECCeec
Confidence 36789999999999 99999999999999999 888888 466666 566666543
No 452
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.59 E-value=9.8e-08 Score=59.35 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=33.6
Q ss_pred EECCCCCCHHHHHHHHHhCCC-CCCCCCC-cceeEEEEEEC-CeEEEEEEEecCCCC
Q psy6968 29 IVGSLASGKSALVHRFMTGAF-LQEESPE-GGRFKKEVVID-GHSHLLLIRDEGVPP 82 (93)
Q Consensus 29 lvG~~g~GKtsl~~r~~~~~f-~~~~~~t-~~~~~~~~~~~-g~~i~~~i~d~~g~~ 82 (93)
++|++|||||||++++++..+ ...+..+ .......+.++ + ..+.+|||+|..
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccc
Confidence 589999999999988777653 2223222 22222234555 4 467899999974
No 453
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.59 E-value=1.2e-07 Score=68.93 Aligned_cols=51 Identities=18% Similarity=0.412 Sum_probs=41.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| .+.++|.++
T Consensus 277 ~~l~~isl~i~~G---e~~~l~G~NGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~i 327 (510)
T PRK15439 277 EGFRNISLEVRAG---EILGLAGVVGAGRTELA-ETLYGL----RPARGG----RIMLNGKEI 327 (510)
T ss_pred CCccceeEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCCc----EEEECCEEC
Confidence 3578999999999 99999999999999999 888876 356666 566666543
No 454
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.59 E-value=1.3e-07 Score=61.45 Aligned_cols=51 Identities=35% Similarity=0.595 Sum_probs=42.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++.++|++.++ -.++++|.+|+|||||+ +++.+- .+||.| ++.+||..+
T Consensus 27 ~AV~~vSFtL~~~---QTlaiIG~NGSGKSTLa-kMlaGm----i~PTsG----~il~n~~~L 77 (267)
T COG4167 27 EAVKPVSFTLREG---QTLAIIGENGSGKSTLA-KMLAGM----IEPTSG----EILINDHPL 77 (267)
T ss_pred hcccceEEEecCC---cEEEEEccCCCcHhHHH-HHHhcc----cCCCCc----eEEECCccc
Confidence 3478899999999 89999999999999999 888887 578888 666766544
No 455
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.59 E-value=1.9e-07 Score=62.16 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=39.9
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.++++++++.+| ..++++|++|+|||||+ +.+.+.. |..| ++.++|..+
T Consensus 11 ~l~~vsl~i~~G---ei~~l~G~nGsGKSTLl-~~l~Gl~-----~~~G----~i~~~g~~i 59 (248)
T PRK03695 11 RLGPLSAEVRAG---EILHLVGPNGAGKSTLL-ARMAGLL-----PGSG----SIQFAGQPL 59 (248)
T ss_pred eecceEEEEcCC---CEEEEECCCCCCHHHHH-HHHcCCC-----CCCe----EEEECCEec
Confidence 589999999999 99999999999999999 8888763 2245 566776543
No 456
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.58 E-value=8.4e-08 Score=72.50 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=47.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCC--C--cceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP--E--GGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~--t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..|+++|..++|||||+.++....+.....+ | .+.|...+..++....+.+|||+|++.|..++
T Consensus 245 p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr 312 (742)
T CHL00189 245 PIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMR 312 (742)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHH
Confidence 6899999999999999998887776543322 2 23343344455566889999999999887654
No 457
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=2.7e-07 Score=62.36 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=41.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+..... ..|..| ++.++|..+
T Consensus 34 ~~l~~vs~~i~~G---e~~~IiG~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~l 89 (274)
T PRK14265 34 LALVDVHLKIPAK---KIIAFIGPSGCGKSTLL-RCFNRMNDLIPGAKVEG----RLLYRDRNI 89 (274)
T ss_pred EEEeeeeeEEcCC---CEEEEECCCCCCHHHHH-HHHhcccccccCCCcCc----eEEECCEec
Confidence 4789999999999 99999999999999999 7777763211 012355 566776543
No 458
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.58 E-value=2.2e-07 Score=68.95 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=43.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCC------cc-ee-EEEEE--E---CCeEEEEEEEecCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA-------FLQEESPE------GG-RF-KKEVV--I---DGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~-------f~~~~~~t------~~-~~-~~~~~--~---~g~~i~~~i~d~~g~~~~ 84 (93)
-.++++|..++|||||+.|++... +...+..+ .+ .+ .+.+. + ++..+.+.+|||+|+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 478999999999999999998642 22333222 11 12 22222 2 577899999999999998
Q ss_pred CC
Q psy6968 85 QP 86 (93)
Q Consensus 85 ~~ 86 (93)
..
T Consensus 84 ~~ 85 (595)
T TIGR01393 84 SY 85 (595)
T ss_pred HH
Confidence 53
No 459
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=2.5e-07 Score=61.44 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=41.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++++++++.+| ..++++|++|+|||||+ +.+.+.... ...|..| ++.++|..+
T Consensus 16 ~~~l~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~v~~~g~~i 72 (250)
T PRK14266 16 AHILKNVNLDIPKN---SVTALIGPSGCGKSTFI-RTLNRMNDLIPGFRHEG----HIYLDGVDI 72 (250)
T ss_pred eEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhhccCCCCCCcc----EEEECCEEc
Confidence 35789999999999 99999999999999999 777764211 1113456 667777554
No 460
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=2.3e-07 Score=63.63 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=42.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++|+|++|+|||||+ +.+.+.... .+.|+.| ++.++|..+
T Consensus 58 ~~iL~~is~~i~~G---e~~~IvG~nGsGKSTLl-~~L~Gl~~~~~~~p~~G----~I~i~g~~i 114 (305)
T PRK14264 58 DHALKGVSMDIPEK---SVTALIGPSGCGKSTFL-RCLNRMNDRIKAARIDG----SVELDGQDI 114 (305)
T ss_pred eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccccCCCCCce----EEEECCEEc
Confidence 35689999999999 99999999999999999 777776321 1124566 667777544
No 461
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.57 E-value=2.2e-07 Score=69.12 Aligned_cols=49 Identities=33% Similarity=0.350 Sum_probs=40.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|..| .+.++|.
T Consensus 30 ~~l~~is~~v~~G---e~~~lvG~nGsGKSTLl-~~l~Gl----l~p~~G----~i~~~g~ 78 (623)
T PRK10261 30 AAVRNLSFSLQRG---ETLAIVGESGSGKSVTA-LALMRL----LEQAGG----LVQCDKM 78 (623)
T ss_pred eEEEeeEEEECCC---CEEEEECCCCChHHHHH-HHHHcC----CCCCCe----EEEECCE
Confidence 5789999999999 99999999999999999 888887 345566 4555553
No 462
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1.9e-07 Score=64.33 Aligned_cols=47 Identities=23% Similarity=0.581 Sum_probs=40.7
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
+.++++.+..+ .-++++|++|+||||++ |.+.|. ..|+.| .+.++|+
T Consensus 18 ~~di~l~i~~G---e~vaLlGpSGaGKsTlL-RiIAGL----e~p~~G----~I~~~~~ 64 (345)
T COG1118 18 LDDISLDIKSG---ELVALLGPSGAGKSTLL-RIIAGL----ETPDAG----RIRLNGR 64 (345)
T ss_pred cccceeeecCC---cEEEEECCCCCcHHHHH-HHHhCc----CCCCCc----eEEECCE
Confidence 56899999999 99999999999999999 999998 567777 6666665
No 463
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.57 E-value=1.8e-07 Score=67.65 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=41.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+.... .|+.| .+.++|..
T Consensus 14 ~~il~~isl~i~~G---e~~~liG~nGsGKSTLl-~~i~G~~~~--~~~~G----~i~~~g~~ 66 (500)
T TIGR02633 14 VKALDGIDLEVRPG---ECVGLCGENGAGKSTLM-KILSGVYPH--GTWDG----EIYWSGSP 66 (500)
T ss_pred eEeecceEEEEeCC---cEEEEECCCCCCHHHHH-HHHhCCCCC--CCCCe----EEEECCEE
Confidence 35789999999999 99999999999999999 888776321 02456 56666643
No 464
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=2.2e-07 Score=62.34 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=40.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+...... .++.| ++.++|..
T Consensus 30 ~vl~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~sG----~i~~~g~~ 84 (265)
T PRK14252 30 QALKNINMMVHEK---QVTALIGPSGCGKSTFL-RCFNRMHDLYPGNHYEG----EIILHPDN 84 (265)
T ss_pred eeeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcccCCCCCCCccc----EEEEcCcc
Confidence 5789999999999 99999999999999999 77777632110 02455 56666543
No 465
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=2.1e-07 Score=62.20 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=41.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP--EGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~--t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+....+. | +.| ++.++|..+
T Consensus 21 ~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-k~l~Gl~~~~~-~~~~~G----~i~~~g~~i 76 (259)
T PRK14260 21 KAIEGISMDIYRN---KVTAIIGPSGCGKSTFI-KTLNRISELEG-PVKVEG----VVDFFGQNI 76 (259)
T ss_pred EeecceEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhcCccc-CCccce----EEEECCEec
Confidence 4789999999999 99999999999999999 77777632110 2 345 667777544
No 466
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=2.7e-07 Score=61.36 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=41.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP--EGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~--t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+... ...| +.| ++.++|..+
T Consensus 16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl~~-~~~~~~~~G----~i~~~g~~~ 72 (250)
T PRK14245 16 FHALKGISMEIEEK---SVVAFIGPSGCGKSTFL-RLFNRMND-LIPATRLEG----EIRIDGRNI 72 (250)
T ss_pred EeEEeeeeEEEeCC---CEEEEECCCCCCHHHHH-HHHhhhhc-ccCCCCCce----EEEECCEec
Confidence 35789999999999 99999999999999999 77766310 0122 356 677777654
No 467
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.56 E-value=2.6e-07 Score=68.77 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=37.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
..+++++++.+.+| .+++|+|++|+|||||+ +.+.+. ..|+.|
T Consensus 332 ~~il~~vsl~i~~G---e~~~l~G~NGsGKSTLl-k~l~G~----~~p~~G 374 (635)
T PRK11147 332 KQLVKDFSAQVQRG---DKIALIGPNGCGKTTLL-KLMLGQ----LQADSG 374 (635)
T ss_pred eEEEcCcEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCc
Confidence 34789999999999 99999999999999999 777776 456666
No 468
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.56 E-value=1.7e-07 Score=75.39 Aligned_cols=51 Identities=27% Similarity=0.411 Sum_probs=45.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| .|+++||++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 1300 ~vL~~is~~I~~G---ekiaIVGrTGsGKSTL~-~lL~rl----~~~~~G----~I~IdG~dI 1350 (1522)
T TIGR00957 1300 LVLRHINVTIHGG---EKVGIVGRTGAGKSSLT-LGLFRI----NESAEG----EIIIDGLNI 1350 (1522)
T ss_pred ccccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----ccCCCC----eEEECCEEc
Confidence 5789999999999 99999999999999999 777776 678888 889999766
No 469
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.56 E-value=1.8e-07 Score=68.41 Aligned_cols=50 Identities=36% Similarity=0.640 Sum_probs=41.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
..+++++|.+.+| ..+++||++||||||+. |.+.+. ..|+.| .+.++|.+
T Consensus 305 ~Av~~VSf~l~~G---E~lglVGeSGsGKSTla-r~i~gL----~~P~~G----~i~~~g~~ 354 (539)
T COG1123 305 KAVDDVSFDLREG---ETLGLVGESGSGKSTLA-RILAGL----LPPSSG----SIIFDGQD 354 (539)
T ss_pred eeeeeeeeEecCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEEeCcc
Confidence 4589999999999 99999999999999999 888887 467777 55555543
No 470
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=2.9e-07 Score=61.70 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=33.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+..
T Consensus 21 ~il~~is~~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl~ 57 (261)
T PRK14258 21 KILEGVSMEIYQS---KVTAIIGPSGCGKSTFL-KCLNRMN 57 (261)
T ss_pred eEeeceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhccc
Confidence 4689999999999 99999999999999999 8888763
No 471
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.55 E-value=2.5e-07 Score=62.79 Aligned_cols=51 Identities=27% Similarity=0.528 Sum_probs=41.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++.+.+| .+++++|++|+|||||+ +.+.+.. . ..| ++.++|..+
T Consensus 17 ~~~l~~isl~I~~G---e~~~IvG~nGsGKSTLl-~~L~gl~----~-~~G----~I~i~g~~i 67 (275)
T cd03289 17 NAVLENISFSISPG---QRVGLLGRTGSGKSTLL-SAFLRLL----N-TEG----DIQIDGVSW 67 (275)
T ss_pred CcceeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhhhc----C-CCc----EEEECCEEh
Confidence 34789999999999 99999999999999999 8888773 2 346 677777544
No 472
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.55 E-value=2e-07 Score=67.45 Aligned_cols=51 Identities=31% Similarity=0.531 Sum_probs=41.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC-CcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+.. .| +.| ++.++|+.+
T Consensus 274 ~~l~~is~~i~~G---e~~~l~G~NGsGKSTLl-~~l~G~~----~p~~~G----~i~~~g~~~ 325 (500)
T TIGR02633 274 KRVDDVSFSLRRG---EILGVAGLVGAGRTELV-QALFGAY----PGKFEG----NVFINGKPV 325 (500)
T ss_pred cccccceeEEeCC---cEEEEeCCCCCCHHHHH-HHHhCCC----CCCCCe----EEEECCEEC
Confidence 4789999999999 99999999999999999 7787763 43 466 566666543
No 473
>PTZ00243 ABC transporter; Provisional
Probab=98.55 E-value=2.1e-07 Score=74.99 Aligned_cols=52 Identities=29% Similarity=0.412 Sum_probs=45.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL 72 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~ 72 (93)
.+++++++.+.+| .|+++||++|+|||||+ ..+.+. ++|+.| ++.+||.++.
T Consensus 1324 ~vL~~vsf~I~~G---ekVaIVGrTGSGKSTLl-~lLlrl----~~p~~G----~I~IDG~di~ 1375 (1560)
T PTZ00243 1324 LVLRGVSFRIAPR---EKVGIVGRTGSGKSTLL-LTFMRM----VEVCGG----EIRVNGREIG 1375 (1560)
T ss_pred ceeecceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEcc
Confidence 3789999999999 99999999999999999 777776 678888 7899997763
No 474
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=4.1e-07 Score=63.12 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=42.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| .+++++|++|+|||||+ +.+.+..... ..|..| .+.++|..+
T Consensus 96 ~~L~~is~~I~~G---e~v~IvG~~GsGKSTLl-~~L~g~~~~~~~~p~~G----~I~idG~~i 151 (329)
T PRK14257 96 HVLHDLNLDIKRN---KVTAFIGPSGCGKSTFL-RNLNQLNDLIEGTSHEG----EIYFLGTNT 151 (329)
T ss_pred eeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccccCCCCCce----EEEECCEEc
Confidence 4789999999999 99999999999999999 7777653211 124456 677787765
No 475
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=2.3e-07 Score=67.30 Aligned_cols=51 Identities=35% Similarity=0.530 Sum_probs=41.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEES-PEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~-~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.+. .. |+.| ++.++|+.+
T Consensus 276 ~vl~~vsl~i~~G---e~~~l~G~NGsGKSTLl-k~i~Gl----~~~~~~G----~i~~~g~~~ 327 (506)
T PRK13549 276 KRVDDVSFSLRRG---EILGIAGLVGAGRTELV-QCLFGA----YPGRWEG----EIFIDGKPV 327 (506)
T ss_pred ccccceeeEEcCC---cEEEEeCCCCCCHHHHH-HHHhCC----CCCCCCc----EEEECCEEC
Confidence 4789999999999 99999999999999999 778776 34 3566 566666543
No 476
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.54 E-value=2.5e-07 Score=67.93 Aligned_cols=43 Identities=23% Similarity=0.490 Sum_probs=37.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
+.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.|
T Consensus 20 ~~il~~vs~~i~~G---e~~~iiG~NGsGKSTLl-k~i~G~----~~p~~G 62 (556)
T PRK11819 20 KQILKDISLSFFPG---AKIGVLGLNGAGKSTLL-RIMAGV----DKEFEG 62 (556)
T ss_pred CeeeeCceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc
Confidence 45789999999999 99999999999999999 888887 356666
No 477
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.53 E-value=2.6e-07 Score=57.95 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=38.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc--------------c-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEG--------------G-RF-KKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~--------------~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
+++++|+.|+|||||+..++...+.....+.. + .. .....+......+.+|||+|+.++.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH
Confidence 47899999999999999988877654332210 0 00 0011122224678999999987764
No 478
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.53 E-value=2.4e-07 Score=66.84 Aligned_cols=51 Identities=22% Similarity=0.451 Sum_probs=45.4
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEE
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLL 73 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~ 73 (93)
..++++++.+| .--+++|+||+|||||+ +.+.+. |.|+.| ++.++|+++.+
T Consensus 20 nd~V~l~v~~G---eIHaLLGENGAGKSTLm-~iL~G~----~~P~~G----eI~v~G~~v~~ 70 (501)
T COG3845 20 NDDVSLSVKKG---EIHALLGENGAGKSTLM-KILFGL----YQPDSG----EIRVDGKEVRI 70 (501)
T ss_pred cCceeeeecCC---cEEEEeccCCCCHHHHH-HHHhCc----ccCCcc----eEEECCEEecc
Confidence 57889999999 88899999999999999 888887 889998 88999988753
No 479
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=68.40 Aligned_cols=58 Identities=33% Similarity=0.520 Sum_probs=49.6
Q ss_pred CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEec
Q psy6968 7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDE 78 (93)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~ 78 (93)
++.++++.+|.+.+| .-+.+||++|+|||||. |.+.+. ..|+.| .+.+||-++ .-||.
T Consensus 348 ~~pil~~isF~l~~G---~~lgIIGPSgSGKSTLa-R~lvG~----w~p~~G----~VRLDga~l--~qWd~ 405 (580)
T COG4618 348 KKPILKGISFALQAG---EALGIIGPSGSGKSTLA-RLLVGI----WPPTSG----SVRLDGADL--RQWDR 405 (580)
T ss_pred CCcceecceeEecCC---ceEEEECCCCccHHHHH-HHHHcc----cccCCC----cEEecchhh--hcCCH
Confidence 467899999999999 99999999999999999 888887 567777 788888644 56774
No 480
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.52 E-value=8.8e-07 Score=52.27 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=35.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
+|+++|..|+|||||++.++..... ....++ .......+.+++..+ .++||.|-.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~ 58 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGIN 58 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCc
Confidence 5899999999999999877764321 112222 221123456677655 599999854
No 481
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.52 E-value=2.8e-07 Score=67.54 Aligned_cols=43 Identities=23% Similarity=0.499 Sum_probs=37.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
+.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.|
T Consensus 18 ~~il~~is~~i~~G---e~~~liG~NGsGKSTLl-~~i~G~----~~p~~G 60 (552)
T TIGR03719 18 KEILKDISLSFFPG---AKIGVLGLNGAGKSTLL-RIMAGV----DKEFNG 60 (552)
T ss_pred CeeecCceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc
Confidence 35789999999999 99999999999999999 888887 356666
No 482
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.51 E-value=4e-07 Score=66.74 Aligned_cols=50 Identities=30% Similarity=0.492 Sum_probs=42.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.|. ..|+.| ++.++|..
T Consensus 38 ~IL~nVSfsI~~G---EivgIiGpNGSGKSTLL-kiLaGL----l~P~sG----eI~I~G~~ 87 (549)
T PRK13545 38 YALNNISFEVPEG---EIVGIIGLNGSGKSTLS-NLIAGV----TMPNKG----TVDIKGSA 87 (549)
T ss_pred eEEeeeEEEEeCC---CEEEEEcCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEe
Confidence 4789999999999 99999999999999999 888886 456677 67777754
No 483
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.51 E-value=2.6e-07 Score=61.43 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=33.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEE----SPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~----~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
|++++|+.++||||+. +.+.....+.. .||...-...+... ..+.+++||..||..+-
T Consensus 1 KiLLmG~~~SGKTSi~-~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~ 62 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIR-SVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFM 62 (232)
T ss_dssp EEEEEESTTSSHHHHH-HHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTT
T ss_pred CEEEEcCCCCChhhHH-HHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccc
Confidence 7999999999999999 77766543221 12221101122222 34689999999998763
No 484
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=3.2e-07 Score=66.92 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=40.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g 68 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.+++
T Consensus 333 ~~l~~is~~i~~G---e~~~l~G~NGsGKSTLl-~~i~G~----~~p~~G----~i~~~~ 380 (530)
T PRK15064 333 PLFKNLNLLLEAG---ERLAIIGENGVGKTTLL-RTLVGE----LEPDSG----TVKWSE 380 (530)
T ss_pred eeecCcEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECC
Confidence 4689999999999 99999999999999999 888776 456666 566665
No 485
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.51 E-value=1.8e-07 Score=63.60 Aligned_cols=47 Identities=28% Similarity=0.546 Sum_probs=39.6
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g 68 (93)
.++++++++++| ..++++|++|+||||.+ ++++|. ..|+.| .+.++|
T Consensus 39 AVqdisf~IP~G---~ivgflGaNGAGKSTtL-KmLTGl----l~p~~G----~v~V~G 85 (325)
T COG4586 39 AVQDISFEIPKG---EIVGFLGANGAGKSTTL-KMLTGL----LLPTSG----KVRVNG 85 (325)
T ss_pred hhheeeeecCCC---cEEEEEcCCCCcchhhH-HHHhCc----cccCCC----eEEecC
Confidence 478999999999 99999999999999999 888887 467766 455544
No 486
>KOG0056|consensus
Probab=98.50 E-value=1.2e-07 Score=69.07 Aligned_cols=52 Identities=25% Similarity=0.502 Sum_probs=44.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+..+++++|.+++| -.+++||++|+||||++ |++-+.| +.+.| .+++||+++
T Consensus 551 k~vl~disF~v~pG---ktvAlVG~SGaGKSTim-RlLfRff----dv~sG----sI~iDgqdI 602 (790)
T KOG0056|consen 551 KPVLSDISFTVQPG---KTVALVGPSGAGKSTIM-RLLFRFF----DVNSG----SITIDGQDI 602 (790)
T ss_pred CceeecceEEecCC---cEEEEECCCCCchhHHH-HHHHHHh----hccCc----eEEEcCchH
Confidence 56789999999999 89999999999999999 8888874 55566 688888765
No 487
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.50 E-value=4.2e-07 Score=66.30 Aligned_cols=51 Identities=31% Similarity=0.412 Sum_probs=41.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+.. |+.| ++.++|+.+
T Consensus 299 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-k~l~Gl~-----~~~G----~i~~~g~~i 349 (529)
T PRK15134 299 NVVVKNISFTLRPG---ETLGLVGESGSGKSTTG-LALLRLI-----NSQG----EIWFDGQPL 349 (529)
T ss_pred ceeeecceeEEcCC---CEEEEECCCCCCHHHHH-HHHhCcC-----CCCc----EEEECCEEc
Confidence 35789999999999 99999999999999999 7777762 3456 566776543
No 488
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.49 E-value=6.1e-07 Score=59.90 Aligned_cols=50 Identities=18% Similarity=0.456 Sum_probs=36.7
Q ss_pred eeeceeee-----CCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968 11 VTSHEFTL-----ARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL 72 (93)
Q Consensus 11 ~~~~~~~~-----~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~ 72 (93)
+.++++.+ .+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.+++..+.
T Consensus 10 ~~~~~l~~~~~~i~~G---e~~~i~G~NGsGKSTLl-k~L~G~----~~p~~G----~i~~~g~~i~ 64 (246)
T cd03237 10 LGEFTLEVEGGSISES---EVIGILGPNGIGKTTFI-KMLAGV----LKPDEG----DIEIELDTVS 64 (246)
T ss_pred cCcEEEEEecCCcCCC---CEEEEECCCCCCHHHHH-HHHhCC----CcCCCC----eEEECCceEE
Confidence 34455554 456 89999999999999999 888876 456677 5667775443
No 489
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.49 E-value=3.2e-07 Score=63.59 Aligned_cols=49 Identities=31% Similarity=0.494 Sum_probs=43.8
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+++.++++..| .-.+++|-+|+|||||+ |.+++. ++||.| ++.++|+.+
T Consensus 44 v~~~sl~v~~G---eIfViMGLSGSGKSTLv-R~~NrL----iept~G----~ilv~g~di 92 (386)
T COG4175 44 VNDASLDVEEG---EIFVIMGLSGSGKSTLV-RLLNRL----IEPTRG----EILVDGKDI 92 (386)
T ss_pred eccceeeecCC---eEEEEEecCCCCHHHHH-HHHhcc----CCCCCc----eEEECCcch
Confidence 58899999999 99999999999999999 999988 689988 788888744
No 490
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.49 E-value=1.5e-07 Score=63.31 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=51.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCC
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGV 80 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g 80 (93)
...+++.++.+.+| .-..++|++|+||||.+ |++-+. ..|+.| .+.++|.++.-.+.|..|
T Consensus 15 k~av~~isf~v~~G---~i~GllG~NGAGKTTtf-RmILgl----le~~~G----~I~~~g~~~~~~~~~rIG 75 (300)
T COG4152 15 KKAVDNISFEVPPG---EIFGLLGPNGAGKTTTF-RMILGL----LEPTEG----EITWNGGPLSQEIKNRIG 75 (300)
T ss_pred eeeecceeeeecCC---eEEEeecCCCCCccchH-HHHhcc----CCccCc----eEEEcCcchhhhhhhhcc
Confidence 34589999999999 89999999999999999 888887 467888 899999988777666554
No 491
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.1e-07 Score=67.24 Aligned_cols=51 Identities=24% Similarity=0.437 Sum_probs=43.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++.+++++++ .++++||.+|||||||+ ..+.|. ..|+.| ++.+||.+.
T Consensus 335 ~~l~~l~~t~~~g---~~talvG~SGaGKSTLl-~lL~G~----~~~~~G----~I~vng~~l 385 (559)
T COG4988 335 PALSDLNLTIKAG---QLTALVGASGAGKSTLL-NLLLGF----LAPTQG----EIRVNGIDL 385 (559)
T ss_pred cccCCceeEecCC---cEEEEECCCCCCHHHHH-HHHhCc----CCCCCc----eEEECCccc
Confidence 5688999999999 99999999999999999 777776 466778 778887654
No 492
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.49 E-value=3.2e-07 Score=60.18 Aligned_cols=42 Identities=31% Similarity=0.544 Sum_probs=33.7
Q ss_pred eeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 17 TLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
++.+| ..++++|++|+|||||+ +.+.+. +.|..| ++.++|+.
T Consensus 2 ~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~ 43 (223)
T TIGR03771 2 SADKG---ELLGLLGPNGAGKTTLL-RAILGL----IPPAKG----TVKVAGAS 43 (223)
T ss_pred ccCCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCcc
Confidence 45677 89999999999999999 888886 456667 67777754
No 493
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.48 E-value=2.6e-07 Score=65.79 Aligned_cols=50 Identities=32% Similarity=0.523 Sum_probs=44.1
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL 72 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~ 72 (93)
+..++.++.+| .-|.++|.+||||||++ .+++|. |.|..| ++.+||++|.
T Consensus 339 vgPiNl~ikrG---elvFliG~NGsGKST~~-~LLtGL----~~PqsG----~I~ldg~pV~ 388 (546)
T COG4615 339 VGPINLTIKRG---ELVFLIGGNGSGKSTLA-MLLTGL----YQPQSG----EILLDGKPVS 388 (546)
T ss_pred ecceeeEEecC---cEEEEECCCCCcHHHHH-HHHhcc----cCCCCC----ceeECCccCC
Confidence 57788889999 99999999999999999 888888 678878 7889998774
No 494
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.48 E-value=3.3e-07 Score=66.22 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=33.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+.
T Consensus 274 ~il~~vsl~i~~G---e~~~i~G~NGsGKSTLl-~~l~G~ 309 (490)
T PRK10938 274 PILHNLSWQVNPG---EHWQIVGPNGAGKSTLL-SLITGD 309 (490)
T ss_pred eEEeeceEEEcCC---CEEEEECCCCCCHHHHH-HHHcCC
Confidence 4789999999999 99999999999999999 778775
No 495
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=3.9e-07 Score=68.00 Aligned_cols=47 Identities=28% Similarity=0.583 Sum_probs=39.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~ 67 (93)
.+++++++.+.+| .+++++|++|+|||||+ +.+.+. ..|+.| .+.++
T Consensus 326 ~il~~isl~i~~G---e~~~l~G~NGsGKSTLl-k~l~G~----~~p~~G----~i~~~ 372 (638)
T PRK10636 326 IILDSIKLNLVPG---SRIGLLGRNGAGKSTLI-KLLAGE----LAPVSG----EIGLA 372 (638)
T ss_pred eeeccceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----eEEEC
Confidence 4689999999999 99999999999999999 888776 456666 45554
No 496
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.47 E-value=4.9e-07 Score=65.76 Aligned_cols=47 Identities=28% Similarity=0.500 Sum_probs=39.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~ 67 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++
T Consensus 298 ~il~~is~~i~~G---e~~~l~G~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~ 344 (520)
T TIGR03269 298 KAVDNVSLEVKEG---EIFGIVGTSGAGKTTLS-KIIAGV----LEPTSG----EVNVR 344 (520)
T ss_pred eEEeeEEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEEe
Confidence 5789999999999 99999999999999999 888876 356666 55553
No 497
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.46 E-value=2.7e-07 Score=74.04 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=34.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFL 50 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~ 50 (93)
.+++++++++.+| .++++||++|||||||+ +++.+.+.
T Consensus 1182 ~vL~~lsl~i~~G---~~vAIVG~SGsGKSTl~-~LL~r~yd 1219 (1466)
T PTZ00265 1182 PIYKDLTFSCDSK---KTTAIVGETGSGKSTVM-SLLMRFYD 1219 (1466)
T ss_pred ccccCeeEEEcCC---CEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 5789999999999 99999999999999999 88877744
No 498
>KOG0075|consensus
Probab=98.45 E-value=2.5e-08 Score=62.21 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=51.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+..+.+||-..+||||+++....+.|.+...|+.|.-. ..+....+...+||..||.+|++|+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk~tkgnvtiklwD~gGq~rfrsmW 82 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPRFRSMW 82 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EEeccCceEEEEEecCCCccHHHHH
Confidence 36889999999999999988888898888888865321 2345567888999999999998875
No 499
>PLN03211 ABC transporter G-25; Provisional
Probab=98.45 E-value=6.1e-07 Score=67.27 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=42.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i 71 (93)
+.+++++++.+.+| ..++++|++|+|||||+ +.+.+.. .|. .| ++.+||+++
T Consensus 81 ~~iL~~vs~~i~~G---e~~aI~GpnGaGKSTLL-~iLaG~~----~~~~~sG----~I~inG~~~ 134 (659)
T PLN03211 81 RTILNGVTGMASPG---EILAVLGPSGSGKSTLL-NALAGRI----QGNNFTG----TILANNRKP 134 (659)
T ss_pred CeeeeCCEEEEECC---EEEEEECCCCCCHHHHH-HHHhCCC----CCCceeE----EEEECCEEC
Confidence 55899999999999 99999999999999999 7777763 332 45 778888654
No 500
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.45 E-value=6.9e-07 Score=66.75 Aligned_cols=51 Identities=22% Similarity=0.375 Sum_probs=43.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|+|||||+ +.+.+. ++|+.| ++.++|+++
T Consensus 22 ~il~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~i 72 (648)
T PRK10535 22 EVLKGISLDIYAG---EMVAIVGASGSGKSTLM-NILGCL----DKPTSG----TYRVAGQDV 72 (648)
T ss_pred eeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEEc
Confidence 4789999999999 99999999999999999 778776 456777 677777653
Done!