Query psy6968
Match_columns 93
No_of_seqs 123 out of 1815
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 23:24:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.8 4.1E-20 1.4E-24 119.9 6.2 67 23-89 12-80 (216)
2 3ihw_A Centg3; RAS, centaurin, 99.7 1.5E-16 5.2E-21 99.8 9.8 65 21-85 17-81 (184)
3 3c5c_A RAS-like protein 12; GD 99.7 7.9E-16 2.7E-20 96.5 10.2 66 22-87 19-85 (187)
4 2j0v_A RAC-like GTP-binding pr 99.7 8.1E-16 2.8E-20 97.7 9.3 68 23-90 8-76 (212)
5 2iwr_A Centaurin gamma 1; ANK 99.6 1.8E-15 6E-20 93.5 9.7 62 22-84 5-67 (178)
6 3q3j_B RHO-related GTP-binding 99.6 6.1E-16 2.1E-20 99.1 7.6 69 22-90 25-94 (214)
7 3t5g_A GTP-binding protein RHE 99.6 1.9E-15 6.4E-20 93.6 9.5 67 23-89 5-72 (181)
8 3reg_A RHO-like small GTPase; 99.6 1E-15 3.6E-20 96.1 8.4 70 20-89 19-89 (194)
9 1m7b_A RND3/RHOE small GTP-bin 99.6 8.5E-16 2.9E-20 95.9 7.6 67 23-89 6-73 (184)
10 1mh1_A RAC1; GTP-binding, GTPa 99.6 1.7E-15 5.9E-20 93.8 8.5 67 23-89 4-71 (186)
11 2q3h_A RAS homolog gene family 99.6 1.7E-15 5.9E-20 95.4 8.3 66 24-89 20-86 (201)
12 1z08_A RAS-related protein RAB 99.6 4.8E-15 1.7E-19 90.6 9.4 68 23-90 5-74 (170)
13 1gwn_A RHO-related GTP-binding 99.6 1.6E-15 5.4E-20 96.8 7.4 68 22-89 26-94 (205)
14 2j1l_A RHO-related GTP-binding 99.6 2.7E-15 9.2E-20 96.0 8.3 69 22-90 32-101 (214)
15 1c1y_A RAS-related protein RAP 99.6 4.1E-15 1.4E-19 90.6 8.8 66 23-88 2-68 (167)
16 2atx_A Small GTP binding prote 99.6 3.1E-15 1E-19 93.8 8.2 67 23-89 17-84 (194)
17 2fn4_A P23, RAS-related protei 99.6 1.3E-14 4.4E-19 89.4 10.7 66 23-88 8-74 (181)
18 1kao_A RAP2A; GTP-binding prot 99.6 1.4E-14 4.8E-19 87.9 10.5 64 24-87 3-67 (167)
19 3kkq_A RAS-related protein M-R 99.6 1.1E-14 3.7E-19 90.3 10.1 68 21-88 15-83 (183)
20 4dsu_A GTPase KRAS, isoform 2B 99.6 1.1E-14 3.7E-19 90.4 10.0 66 23-88 3-69 (189)
21 3con_A GTPase NRAS; structural 99.6 8.6E-15 3E-19 91.4 9.6 71 20-90 17-88 (190)
22 4gzl_A RAS-related C3 botulinu 99.6 4.3E-15 1.5E-19 94.4 7.2 68 22-89 28-96 (204)
23 1oix_A RAS-related protein RAB 99.6 1.8E-14 6.2E-19 90.8 10.0 65 24-88 29-95 (191)
24 2f9l_A RAB11B, member RAS onco 99.6 1.4E-14 4.8E-19 91.5 9.3 65 24-88 5-71 (199)
25 2fv8_A H6, RHO-related GTP-bin 99.6 1.2E-14 3.9E-19 92.4 8.8 66 24-89 25-91 (207)
26 1z2a_A RAS-related protein RAB 99.6 1.8E-14 6.3E-19 87.7 9.4 65 24-88 5-71 (168)
27 2gco_A H9, RHO-related GTP-bin 99.6 7.4E-15 2.5E-19 92.9 7.8 67 23-89 24-91 (201)
28 1u8z_A RAS-related protein RAL 99.6 3E-14 1E-18 86.5 10.0 64 24-87 4-68 (168)
29 3oes_A GTPase rhebl1; small GT 99.6 9E-15 3.1E-19 92.4 7.8 67 23-89 23-90 (201)
30 3bwd_D RAC-like GTP-binding pr 99.6 8.8E-16 3E-20 95.0 3.0 66 24-89 8-74 (182)
31 2bcg_Y Protein YP2, GTP-bindin 99.6 1.9E-14 6.6E-19 91.0 9.1 66 24-89 8-75 (206)
32 1ek0_A Protein (GTP-binding pr 99.6 1.8E-14 6.1E-19 87.8 8.3 64 24-87 3-68 (170)
33 2erx_A GTP-binding protein DI- 99.6 5.2E-14 1.8E-18 85.8 10.3 63 24-86 3-66 (172)
34 3cpj_B GTP-binding protein YPT 99.6 2.5E-14 8.7E-19 91.8 9.2 66 24-89 13-80 (223)
35 2ce2_X GTPase HRAS; signaling 99.6 5.2E-14 1.8E-18 85.2 10.1 64 24-87 3-67 (166)
36 2hxs_A RAB-26, RAS-related pro 99.6 1.4E-14 4.9E-19 89.2 7.7 66 23-88 5-73 (178)
37 2a5j_A RAS-related protein RAB 99.6 2.5E-14 8.4E-19 89.7 8.8 67 22-88 19-87 (191)
38 2fu5_C RAS-related protein RAB 99.6 5.2E-15 1.8E-19 91.8 5.6 67 24-90 8-76 (183)
39 2atv_A RERG, RAS-like estrogen 99.6 5.1E-14 1.7E-18 88.5 10.1 62 22-83 26-88 (196)
40 2bov_A RAla, RAS-related prote 99.6 6E-14 2E-18 88.3 10.4 65 23-87 13-78 (206)
41 2a9k_A RAS-related protein RAL 99.5 6.3E-14 2.2E-18 86.6 10.3 66 22-87 16-82 (187)
42 2g6b_A RAS-related protein RAB 99.5 5.4E-14 1.9E-18 86.7 9.7 68 23-90 9-79 (180)
43 2ew1_A RAS-related protein RAB 99.5 6.9E-15 2.4E-19 93.7 5.8 64 24-87 26-91 (201)
44 2gf9_A RAS-related protein RAB 99.5 5.1E-14 1.7E-18 88.0 9.5 67 23-89 21-89 (189)
45 1wms_A RAB-9, RAB9, RAS-relate 99.5 3.6E-14 1.2E-18 87.3 8.5 65 23-87 6-72 (177)
46 2gf0_A GTP-binding protein DI- 99.5 4.6E-14 1.6E-18 88.3 9.1 65 22-86 6-71 (199)
47 1g16_A RAS-related protein SEC 99.5 2.5E-14 8.4E-19 87.3 7.5 65 24-88 3-69 (170)
48 3q72_A GTP-binding protein RAD 99.5 2.2E-14 7.6E-19 87.4 7.2 66 24-90 2-68 (166)
49 2y8e_A RAB-protein 6, GH09086P 99.5 3.5E-14 1.2E-18 87.2 8.1 66 23-88 13-80 (179)
50 1r2q_A RAS-related protein RAB 99.5 4.4E-14 1.5E-18 86.0 8.4 64 24-87 6-71 (170)
51 3tw8_B RAS-related protein RAB 99.5 3.2E-14 1.1E-18 87.6 7.8 66 24-89 9-76 (181)
52 2oil_A CATX-8, RAS-related pro 99.5 1.1E-13 3.8E-18 86.6 10.3 66 23-88 24-91 (193)
53 1z0j_A RAB-22, RAS-related pro 99.5 4.7E-14 1.6E-18 86.0 8.3 65 24-88 6-72 (170)
54 1vg8_A RAS-related protein RAB 99.5 4E-14 1.4E-18 89.3 8.2 67 23-89 7-75 (207)
55 1x3s_A RAS-related protein RAB 99.5 6.6E-14 2.2E-18 87.3 9.2 65 24-88 15-81 (195)
56 2efe_B Small GTP-binding prote 99.5 5.7E-14 1.9E-18 86.7 8.6 67 22-88 10-78 (181)
57 1z06_A RAS-related protein RAB 99.5 4E-14 1.4E-18 88.5 7.6 64 22-85 18-83 (189)
58 3tkl_A RAS-related protein RAB 99.5 9.7E-14 3.3E-18 86.7 9.3 66 23-88 15-82 (196)
59 1m2o_B GTP-binding protein SAR 99.5 4.4E-14 1.5E-18 88.8 7.6 74 9-89 12-85 (190)
60 1ky3_A GTP-binding protein YPT 99.5 3.5E-14 1.2E-18 87.4 7.0 68 23-90 7-77 (182)
61 2hup_A RAS-related protein RAB 99.5 4.1E-14 1.4E-18 89.7 7.4 64 24-87 29-94 (201)
62 3clv_A RAB5 protein, putative; 99.5 1E-13 3.5E-18 86.4 9.0 65 23-87 6-109 (208)
63 2p5s_A RAS and EF-hand domain 99.5 9.6E-14 3.3E-18 87.5 8.8 64 23-86 27-92 (199)
64 1z0f_A RAB14, member RAS oncog 99.5 1.3E-13 4.3E-18 84.7 9.1 65 23-87 14-80 (179)
65 2fg5_A RAB-22B, RAS-related pr 99.5 4.9E-14 1.7E-18 88.4 7.4 66 23-88 22-89 (192)
66 3cph_A RAS-related protein SEC 99.5 1E-13 3.5E-18 87.7 8.9 65 24-88 20-86 (213)
67 3q85_A GTP-binding protein REM 99.5 1E-13 3.5E-18 84.7 8.3 62 25-86 3-66 (169)
68 2nzj_A GTP-binding protein REM 99.5 1.3E-13 4.6E-18 84.4 8.6 62 23-84 3-65 (175)
69 2bme_A RAB4A, RAS-related prot 99.5 1E-13 3.6E-18 85.9 8.1 64 24-87 10-75 (186)
70 1f6b_A SAR1; gtpases, N-termin 99.5 2.7E-14 9.3E-19 90.4 4.9 63 24-89 25-87 (198)
71 1zbd_A Rabphilin-3A; G protein 99.5 2.2E-13 7.5E-18 85.8 9.0 64 24-87 8-73 (203)
72 3cbq_A GTP-binding protein REM 99.5 7.5E-14 2.6E-18 88.2 6.8 64 22-85 21-86 (195)
73 2zej_A Dardarin, leucine-rich 99.5 7.3E-15 2.5E-19 91.8 2.0 65 24-88 2-73 (184)
74 2cjw_A GTP-binding protein GEM 99.5 2E-13 6.7E-18 86.1 8.6 65 23-87 5-73 (192)
75 2il1_A RAB12; G-protein, GDP, 99.5 1.2E-13 4E-18 86.8 7.4 67 20-86 22-90 (192)
76 2wkq_A NPH1-1, RAS-related C3 99.5 1.7E-13 5.8E-18 91.8 8.4 65 25-89 156-221 (332)
77 2o52_A RAS-related protein RAB 99.5 5E-14 1.7E-18 89.1 5.5 66 23-88 24-91 (200)
78 2fh5_B SR-beta, signal recogni 99.5 5.9E-14 2E-18 89.2 5.3 63 23-86 6-69 (214)
79 3th5_A RAS-related C3 botulinu 99.2 4.3E-15 1.5E-19 94.0 0.0 68 23-90 29-97 (204)
80 4bas_A ADP-ribosylation factor 99.5 1.6E-13 5.5E-18 85.9 6.7 68 20-89 13-81 (199)
81 3gj0_A GTP-binding nuclear pro 99.5 5.2E-14 1.8E-18 90.0 4.4 68 22-89 13-82 (221)
82 2h57_A ADP-ribosylation factor 99.5 6.8E-14 2.3E-18 87.5 4.9 65 23-89 20-85 (190)
83 1zj6_A ADP-ribosylation factor 99.4 1.5E-13 5.3E-18 85.6 6.1 63 23-88 15-77 (187)
84 2g3y_A GTP-binding protein GEM 99.4 8.1E-13 2.8E-17 85.1 9.4 61 23-83 36-99 (211)
85 2wji_A Ferrous iron transport 99.4 9.4E-13 3.2E-17 80.9 9.0 60 24-85 3-64 (165)
86 1upt_A ARL1, ADP-ribosylation 99.4 3E-13 1E-17 82.6 6.6 62 24-88 7-68 (171)
87 3t1o_A Gliding protein MGLA; G 99.4 7.2E-14 2.4E-18 87.1 3.8 66 22-88 12-91 (198)
88 3l0i_B RAS-related protein RAB 99.4 4E-14 1.4E-18 89.3 2.6 67 24-90 33-101 (199)
89 3bc1_A RAS-related protein RAB 99.4 7E-13 2.4E-17 82.2 8.2 64 23-86 10-85 (195)
90 2x77_A ADP-ribosylation factor 99.4 4.9E-13 1.7E-17 83.4 7.0 65 23-90 21-85 (189)
91 1ksh_A ARF-like protein 2; sma 99.4 3.1E-13 1.1E-17 84.0 6.0 63 23-88 17-79 (186)
92 1moz_A ARL1, ADP-ribosylation 99.4 1.8E-13 6E-18 84.7 4.7 64 23-89 17-80 (183)
93 2lkc_A Translation initiation 99.4 8.2E-13 2.8E-17 81.2 7.7 64 24-89 8-73 (178)
94 2h17_A ADP-ribosylation factor 99.4 1.2E-13 4.2E-18 85.8 4.0 64 22-88 19-82 (181)
95 2yc2_C IFT27, small RAB-relate 99.4 2.2E-14 7.4E-19 90.3 0.5 64 24-87 20-89 (208)
96 1zd9_A ADP-ribosylation factor 99.4 5.6E-13 1.9E-17 83.3 6.9 63 23-87 21-83 (188)
97 3r7w_B Gtpase2, GTP-binding pr 99.4 1.4E-13 4.6E-18 94.3 4.2 56 26-85 1-60 (331)
98 2f7s_A C25KG, RAS-related prot 99.4 2.2E-13 7.4E-18 86.7 3.9 63 24-86 25-99 (217)
99 2b6h_A ADP-ribosylation factor 99.4 8.8E-13 3E-17 82.9 6.5 63 23-88 28-90 (192)
100 2wjg_A FEOB, ferrous iron tran 99.4 2.9E-12 9.8E-17 79.6 8.2 61 23-85 6-68 (188)
101 3dz8_A RAS-related protein RAB 99.4 1.1E-13 3.7E-18 86.7 1.6 63 24-86 23-87 (191)
102 1r8s_A ADP-ribosylation factor 99.4 1.2E-12 4.2E-17 79.5 6.1 59 25-86 1-59 (164)
103 1fzq_A ADP-ribosylation factor 99.4 6.6E-13 2.2E-17 82.8 4.9 61 23-86 15-75 (181)
104 4djt_A GTP-binding nuclear pro 99.4 6.2E-13 2.1E-17 84.6 4.8 67 22-88 9-78 (218)
105 3llu_A RAS-related GTP-binding 99.4 3.5E-13 1.2E-17 84.9 3.5 69 19-88 15-86 (196)
106 2gj8_A MNME, tRNA modification 99.3 2E-11 6.8E-16 75.6 9.2 58 25-84 5-65 (172)
107 3r7w_A Gtpase1, GTP-binding pr 99.3 6E-12 2.1E-16 84.9 6.0 60 24-84 3-65 (307)
108 3c5h_A Glucocorticoid receptor 99.2 1.5E-12 5.2E-17 85.6 0.4 70 22-91 17-138 (255)
109 3o47_A ADP-ribosylation factor 99.2 2.1E-11 7.1E-16 83.0 5.8 63 23-88 164-226 (329)
110 3dpu_A RAB family protein; roc 99.2 3.1E-11 1.1E-15 86.5 6.2 67 22-88 39-115 (535)
111 2dyk_A GTP-binding protein; GT 99.2 9.6E-11 3.3E-15 70.7 7.4 59 25-85 2-63 (161)
112 3def_A T7I23.11 protein; chlor 99.2 1.3E-10 4.3E-15 76.6 8.2 64 22-87 34-100 (262)
113 3a1s_A Iron(II) transport prot 99.2 6E-11 2E-15 78.4 6.2 61 24-86 5-67 (258)
114 3lvq_E ARF-GAP with SH3 domain 99.1 6.2E-11 2.1E-15 84.1 6.3 64 23-89 321-384 (497)
115 2ged_A SR-beta, signal recogni 99.1 3.1E-11 1E-15 75.3 3.3 61 23-87 47-107 (193)
116 3k53_A Ferrous iron transport 99.1 3.2E-10 1.1E-14 74.9 7.9 61 24-86 3-65 (271)
117 2cxx_A Probable GTP-binding pr 99.1 1.3E-10 4.6E-15 71.9 5.7 54 25-82 2-55 (190)
118 3b1v_A Ferrous iron uptake tra 99.1 1.3E-10 4.4E-15 77.5 5.9 61 24-86 3-64 (272)
119 1nrj_B SR-beta, signal recogni 99.1 6.3E-11 2.1E-15 75.3 3.9 57 23-86 11-70 (218)
120 3t5d_A Septin-7; GTP-binding p 99.1 2.4E-10 8.1E-15 75.7 6.5 62 23-84 7-78 (274)
121 3tif_A Uncharacterized ABC tra 99.1 4.2E-10 1.4E-14 73.5 6.7 51 9-71 19-69 (235)
122 1h65_A Chloroplast outer envel 99.1 2.2E-10 7.6E-15 75.7 5.5 64 22-87 37-103 (270)
123 2qu8_A Putative nucleolar GTP- 99.0 7.7E-10 2.6E-14 71.0 7.1 59 23-83 28-88 (228)
124 3i8s_A Ferrous iron transport 99.0 5E-10 1.7E-14 74.4 6.2 62 24-87 3-66 (274)
125 2pcj_A ABC transporter, lipopr 99.0 6E-10 2E-14 72.3 6.1 52 8-71 17-68 (224)
126 1b0u_A Histidine permease; ABC 99.0 8.8E-10 3E-14 73.1 6.8 52 8-71 19-70 (262)
127 3gfo_A Cobalt import ATP-bindi 99.0 9.1E-10 3.1E-14 73.6 6.6 51 9-71 22-72 (275)
128 4g1u_C Hemin import ATP-bindin 99.0 7.6E-10 2.6E-14 73.6 6.2 52 8-71 24-75 (266)
129 2ff7_A Alpha-hemolysin translo 99.0 8.1E-10 2.8E-14 72.7 6.3 52 8-71 22-73 (247)
130 2olj_A Amino acid ABC transpor 99.0 9.1E-10 3.1E-14 73.2 6.6 52 8-71 37-88 (263)
131 1mv5_A LMRA, multidrug resista 99.0 8.9E-10 3E-14 72.2 6.4 52 8-71 15-66 (243)
132 3iby_A Ferrous iron transport 99.0 1.3E-09 4.5E-14 71.9 7.2 60 25-86 2-63 (256)
133 3lxx_A GTPase IMAP family memb 99.0 3E-09 1E-13 68.8 8.8 59 23-83 28-90 (239)
134 1ji0_A ABC transporter; ATP bi 99.0 1E-09 3.5E-14 71.8 6.4 52 8-71 19-70 (240)
135 1g6h_A High-affinity branched- 99.0 8.8E-10 3E-14 72.8 6.1 52 8-71 20-71 (257)
136 1svi_A GTP-binding protein YSX 99.0 8.2E-10 2.8E-14 68.7 5.7 55 23-80 22-78 (195)
137 2ixe_A Antigen peptide transpo 99.0 1.1E-09 3.9E-14 72.9 6.6 52 8-71 32-83 (271)
138 2xtp_A GTPase IMAP family memb 99.0 2.3E-09 7.7E-14 70.1 7.9 61 23-85 21-85 (260)
139 3fvq_A Fe(3+) IONS import ATP- 99.0 1.5E-09 5.1E-14 75.1 6.9 52 8-71 17-68 (359)
140 2yz2_A Putative ABC transporte 99.0 1.7E-09 5.7E-14 71.8 6.7 52 8-71 20-71 (266)
141 2qag_A Septin-2, protein NEDD5 99.0 9.5E-10 3.3E-14 75.8 5.7 58 24-81 37-105 (361)
142 1vpl_A ABC transporter, ATP-bi 99.0 1.5E-09 5.1E-14 71.9 6.4 52 8-71 28-79 (256)
143 2ihy_A ABC transporter, ATP-bi 99.0 1.1E-09 3.8E-14 73.2 5.8 52 8-71 34-85 (279)
144 3nh6_A ATP-binding cassette SU 99.0 8.8E-10 3E-14 74.7 5.4 52 8-71 67-118 (306)
145 1sgw_A Putative ABC transporte 99.0 1.5E-09 5E-14 70.2 6.1 51 9-71 23-73 (214)
146 1pui_A ENGB, probable GTP-bind 98.9 5.5E-10 1.9E-14 70.4 3.9 62 16-83 21-84 (210)
147 1mky_A Probable GTP-binding pr 98.9 2.3E-09 8E-14 75.3 7.3 57 26-84 3-62 (439)
148 3tui_C Methionine import ATP-b 98.9 2.2E-09 7.5E-14 74.4 6.9 51 9-71 42-92 (366)
149 3rlf_A Maltose/maltodextrin im 98.9 2.3E-09 7.9E-14 74.6 6.9 52 8-71 16-67 (381)
150 2it1_A 362AA long hypothetical 98.9 3.1E-09 1.1E-13 73.5 7.0 52 8-71 16-67 (362)
151 1g29_1 MALK, maltose transport 98.9 3.6E-09 1.2E-13 73.4 7.3 51 9-71 17-67 (372)
152 2yyz_A Sugar ABC transporter, 98.9 2.9E-09 1E-13 73.6 6.7 51 9-71 17-67 (359)
153 2pze_A Cystic fibrosis transme 98.9 3.4E-09 1.2E-13 68.9 6.5 50 8-69 21-70 (229)
154 1z47_A CYSA, putative ABC-tran 98.9 3E-09 1E-13 73.4 6.6 52 8-71 28-79 (355)
155 1mky_A Probable GTP-binding pr 98.9 2.4E-09 8.2E-14 75.2 6.2 61 24-86 180-243 (439)
156 1wf3_A GTP-binding protein; GT 98.9 4.5E-09 1.5E-13 70.8 7.2 59 24-84 7-68 (301)
157 2cbz_A Multidrug resistance-as 98.9 2.4E-09 8.2E-14 70.0 5.7 50 8-69 18-67 (237)
158 1v43_A Sugar-binding transport 98.9 4.1E-09 1.4E-13 73.1 6.9 51 9-71 25-75 (372)
159 1oxx_K GLCV, glucose, ABC tran 98.9 2.9E-09 1E-13 73.4 5.8 50 10-71 20-69 (353)
160 2qi9_C Vitamin B12 import ATP- 98.9 3.1E-09 1.1E-13 70.0 5.7 50 9-71 14-63 (249)
161 2qnr_A Septin-2, protein NEDD5 98.9 1.7E-09 5.9E-14 72.8 4.5 57 25-81 19-86 (301)
162 3lxw_A GTPase IMAP family memb 98.9 1.7E-08 5.8E-13 66.0 9.0 59 21-81 18-80 (247)
163 3d31_A Sulfate/molybdate ABC t 98.9 3.6E-09 1.2E-13 72.9 5.8 50 10-71 15-64 (348)
164 3gee_A MNME, tRNA modification 98.9 2.4E-09 8.3E-14 76.3 4.8 60 25-86 234-296 (476)
165 2ghi_A Transport protein; mult 98.8 7E-09 2.4E-13 68.7 6.3 50 9-71 34-83 (260)
166 2pjz_A Hypothetical protein ST 98.8 8E-09 2.7E-13 68.6 6.1 50 8-71 18-67 (263)
167 1jal_A YCHF protein; nucleotid 98.8 8.7E-09 3E-13 71.3 6.3 60 25-84 3-79 (363)
168 2d2e_A SUFC protein; ABC-ATPas 98.8 7.3E-09 2.5E-13 68.1 5.6 54 8-71 16-69 (250)
169 3pqc_A Probable GTP-binding pr 98.8 2E-08 6.8E-13 62.1 7.3 54 23-80 22-77 (195)
170 2hjg_A GTP-binding protein ENG 98.8 2.4E-09 8.3E-14 75.1 3.3 58 24-83 175-235 (436)
171 2zu0_C Probable ATP-dependent 98.8 8.3E-09 2.8E-13 68.5 5.6 54 8-71 33-86 (267)
172 3b5x_A Lipid A export ATP-bind 98.8 9.5E-09 3.2E-13 74.5 6.3 52 8-71 356-407 (582)
173 3b60_A Lipid A export ATP-bind 98.8 8.8E-09 3E-13 74.6 6.1 52 8-71 356-407 (582)
174 3iev_A GTP-binding protein ERA 98.8 3.3E-08 1.1E-12 66.6 8.1 62 23-85 9-73 (308)
175 2yl4_A ATP-binding cassette SU 98.8 8E-09 2.7E-13 75.0 5.4 51 9-71 358-408 (595)
176 2bbs_A Cystic fibrosis transme 98.8 8.8E-09 3E-13 69.3 5.2 50 8-69 51-100 (290)
177 4a82_A Cystic fibrosis transme 98.8 8.4E-09 2.9E-13 74.7 5.1 52 8-71 354-405 (578)
178 4dhe_A Probable GTP-binding pr 98.8 8.1E-09 2.8E-13 65.5 4.5 60 23-82 28-90 (223)
179 3qq5_A Small GTP-binding prote 98.7 6.3E-09 2.1E-13 73.2 3.4 66 22-88 32-100 (423)
180 4dcu_A GTP-binding protein ENG 98.7 5.3E-09 1.8E-13 73.8 3.0 56 23-80 194-252 (456)
181 3qf4_B Uncharacterized ABC tra 98.7 1.2E-08 4E-13 74.3 4.9 52 8-71 368-419 (598)
182 1xzp_A Probable tRNA modificat 98.7 1E-08 3.5E-13 73.2 4.3 59 25-85 244-306 (482)
183 3qf4_A ABC transporter, ATP-bi 98.7 1.3E-08 4.5E-13 73.9 4.7 52 8-71 356-407 (587)
184 3gd7_A Fusion complex of cysti 98.7 1.6E-08 5.6E-13 70.5 4.5 50 8-70 34-83 (390)
185 4f4c_A Multidrug resistance pr 98.7 2E-08 6.7E-13 78.6 5.3 51 9-71 1093-1143(1321)
186 2qag_C Septin-7; cell cycle, c 98.7 3.1E-08 1.1E-12 69.6 5.9 61 24-84 31-101 (418)
187 2onk_A Molybdate/tungstate ABC 98.7 5.7E-08 2E-12 63.6 6.7 49 10-71 14-62 (240)
188 2nq2_C Hypothetical ABC transp 98.7 5.2E-08 1.8E-12 64.3 6.1 43 8-58 18-60 (253)
189 2qtf_A Protein HFLX, GTP-bindi 98.6 7.2E-08 2.5E-12 66.6 6.9 55 25-81 179-236 (364)
190 3geh_A MNME, tRNA modification 98.6 1.2E-08 4E-13 72.5 2.7 59 25-85 225-286 (462)
191 2e87_A Hypothetical protein PH 98.6 5.3E-08 1.8E-12 66.7 5.5 59 24-84 167-227 (357)
192 2ohf_A Protein OLA1, GTP-bindi 98.6 6.5E-08 2.2E-12 67.7 5.4 62 25-86 23-101 (396)
193 2hjg_A GTP-binding protein ENG 98.6 1.3E-08 4.4E-13 71.5 1.8 55 25-82 4-62 (436)
194 3g5u_A MCG1178, multidrug resi 98.6 7.4E-08 2.5E-12 75.2 6.2 51 9-71 404-454 (1284)
195 3izy_P Translation initiation 98.6 3.6E-09 1.2E-13 76.4 -1.2 64 25-90 5-71 (537)
196 4f4c_A Multidrug resistance pr 98.6 9.4E-08 3.2E-12 74.8 6.5 52 8-71 431-482 (1321)
197 3j2k_7 ERF3, eukaryotic polype 98.6 1.2E-07 4.1E-12 66.8 6.5 25 22-46 15-39 (439)
198 3p26_A Elongation factor 1 alp 98.6 2.8E-08 9.7E-13 70.6 3.1 26 22-47 31-56 (483)
199 1ega_A Protein (GTP-binding pr 98.5 3.8E-07 1.3E-11 61.3 8.1 56 25-82 9-67 (301)
200 3sjy_A Translation initiation 98.5 4.6E-07 1.6E-11 63.0 8.6 27 22-48 6-32 (403)
201 4dcu_A GTP-binding protein ENG 98.5 3E-08 1E-12 69.9 1.6 58 24-82 23-82 (456)
202 3g5u_A MCG1178, multidrug resi 98.5 9.9E-08 3.4E-12 74.5 4.1 51 9-71 1047-1097(1284)
203 1wxq_A GTP-binding protein; st 98.5 4.9E-07 1.7E-11 63.1 7.0 24 25-48 1-24 (397)
204 1htw_A HI0065; nucleotide-bind 98.4 1.7E-08 5.7E-13 62.4 -0.6 36 10-49 22-57 (158)
205 2aka_B Dynamin-1; fusion prote 98.4 2.6E-07 8.8E-12 61.1 5.0 27 24-50 26-52 (299)
206 2dby_A GTP-binding protein; GD 98.4 3.3E-07 1.1E-11 63.5 5.4 61 25-85 2-83 (368)
207 3izq_1 HBS1P, elongation facto 98.4 3.2E-07 1.1E-11 67.1 5.5 27 21-47 164-190 (611)
208 1g7s_A Translation initiation 98.4 1.4E-07 4.7E-12 68.9 3.2 64 25-90 6-89 (594)
209 3ohm_A Guanine nucleotide-bind 98.4 7.2E-07 2.5E-11 60.9 6.6 21 23-43 6-26 (327)
210 1s0u_A EIF-2-gamma, translatio 98.4 5.1E-07 1.7E-11 62.8 5.9 63 23-85 7-95 (408)
211 1f60_A Elongation factor EEF1A 98.4 4E-07 1.4E-11 64.4 5.3 25 23-47 6-30 (458)
212 3t34_A Dynamin-related protein 98.4 4E-07 1.4E-11 62.3 5.1 26 25-50 35-60 (360)
213 2dy1_A Elongation factor G; tr 98.4 2.6E-07 8.9E-12 68.1 4.4 61 25-85 10-88 (665)
214 1z6g_A Guanylate kinase; struc 98.4 2.2E-07 7.5E-12 59.7 3.5 37 8-48 10-46 (218)
215 2hf9_A Probable hydrogenase ni 98.4 5.3E-09 1.8E-13 66.7 -4.0 33 24-56 38-70 (226)
216 2c78_A Elongation factor TU-A; 98.4 5.2E-07 1.8E-11 62.7 5.4 64 22-85 9-89 (405)
217 1jny_A EF-1-alpha, elongation 98.4 1.2E-07 4E-12 66.6 1.9 25 23-47 5-29 (435)
218 1zo1_I IF2, translation initia 98.3 3.5E-08 1.2E-12 70.8 -1.0 62 25-90 5-70 (501)
219 2iw3_A Elongation factor 3A; a 98.3 4.9E-07 1.7E-11 69.2 5.0 48 9-68 687-734 (986)
220 1udx_A The GTP-binding protein 98.3 9.1E-07 3.1E-11 62.2 6.0 69 11-83 147-217 (416)
221 3mca_A HBS1, elongation factor 98.3 1.7E-07 6E-12 68.3 2.3 25 22-46 175-199 (592)
222 1kk1_A EIF2gamma; initiation o 98.3 7.4E-07 2.5E-11 62.0 5.3 63 23-85 9-97 (410)
223 3tr5_A RF-3, peptide chain rel 98.3 1.3E-06 4.4E-11 63.0 6.1 21 25-45 14-34 (528)
224 4gp7_A Metallophosphoesterase; 98.3 5.9E-07 2E-11 55.6 3.6 27 13-42 1-27 (171)
225 2elf_A Protein translation elo 98.3 3.6E-07 1.2E-11 63.2 2.8 52 26-85 23-74 (370)
226 1zun_B Sulfate adenylate trans 98.3 1.1E-06 3.9E-11 61.5 5.4 26 23-48 23-48 (434)
227 1tq4_A IIGP1, interferon-induc 98.3 1.1E-07 3.7E-12 66.8 0.2 39 9-48 37-92 (413)
228 2h5e_A Peptide chain release f 98.3 5.4E-07 1.8E-11 64.9 3.7 22 25-46 14-35 (529)
229 1r5b_A Eukaryotic peptide chai 98.3 5.9E-07 2E-11 63.7 3.8 25 22-46 41-65 (467)
230 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 1.7E-06 5.9E-11 60.4 5.9 59 25-83 21-97 (392)
231 1d2e_A Elongation factor TU (E 98.3 4E-07 1.4E-11 63.2 2.7 62 24-85 3-80 (397)
232 1n0u_A EF-2, elongation factor 98.2 2.4E-06 8.2E-11 64.5 6.9 63 24-86 19-113 (842)
233 3ozx_A RNAse L inhibitor; ATP 98.2 1.6E-06 5.5E-11 62.6 5.7 50 11-72 284-333 (538)
234 3cb4_D GTP-binding protein LEP 98.2 1.2E-06 4.1E-11 64.0 4.6 61 25-85 5-85 (599)
235 1wb1_A Translation elongation 98.2 5.9E-07 2E-11 64.0 2.9 60 23-84 18-86 (482)
236 3cnl_A YLQF, putative uncharac 98.2 6.6E-07 2.3E-11 59.2 2.9 56 25-84 100-157 (262)
237 2jeo_A Uridine-cytidine kinase 98.2 1.3E-06 4.3E-11 56.8 4.0 36 7-45 11-46 (245)
238 4fid_A G protein alpha subunit 98.2 7.1E-07 2.4E-11 61.3 2.9 21 23-43 4-24 (340)
239 1dar_A EF-G, elongation factor 98.2 3E-06 1E-10 62.7 6.3 60 24-85 12-91 (691)
240 2rdo_7 EF-G, elongation factor 98.2 5.3E-06 1.8E-10 61.5 7.5 62 25-86 11-97 (704)
241 3sop_A Neuronal-specific septi 98.2 4.4E-07 1.5E-11 60.3 1.4 23 24-46 2-24 (270)
242 1jwy_B Dynamin A GTPase domain 98.2 2.8E-06 9.4E-11 56.6 5.1 25 25-49 25-49 (315)
243 2gza_A Type IV secretion syste 98.2 6.6E-07 2.3E-11 61.6 2.0 39 12-58 166-204 (361)
244 1yqt_A RNAse L inhibitor; ATP- 98.1 2.6E-06 9E-11 61.4 5.1 35 10-49 37-71 (538)
245 2xex_A Elongation factor G; GT 98.1 9.2E-06 3.2E-10 60.2 7.6 61 24-86 10-90 (693)
246 3lnc_A Guanylate kinase, GMP k 98.1 1E-06 3.6E-11 56.6 2.2 39 6-48 12-51 (231)
247 2ywe_A GTP-binding protein LEP 98.1 2.5E-06 8.5E-11 62.4 4.4 61 25-85 7-87 (600)
248 2x2e_A Dynamin-1; nitration, h 98.1 1.8E-06 6.2E-11 59.0 3.1 26 25-50 32-57 (353)
249 1lnz_A SPO0B-associated GTP-bi 98.1 1.9E-06 6.4E-11 59.1 3.0 56 25-81 159-216 (342)
250 2v9p_A Replication protein E1; 98.1 7.7E-07 2.6E-11 60.3 1.1 35 9-47 114-148 (305)
251 3tr0_A Guanylate kinase, GMP k 98.1 3.3E-06 1.1E-10 52.8 3.9 29 16-48 2-30 (205)
252 1yqt_A RNAse L inhibitor; ATP- 98.0 5.8E-06 2E-10 59.7 5.3 40 11-58 302-341 (538)
253 2pt7_A CAG-ALFA; ATPase, prote 98.0 7.4E-07 2.5E-11 60.7 0.3 48 10-69 160-207 (330)
254 3bk7_A ABC transporter ATP-bin 98.0 6.9E-06 2.4E-10 60.1 5.2 40 11-58 372-411 (607)
255 3bk7_A ABC transporter ATP-bin 98.0 6.5E-06 2.2E-10 60.3 5.1 35 10-49 107-141 (607)
256 1puj_A YLQF, conserved hypothe 98.0 9E-06 3.1E-10 54.3 5.1 55 24-82 120-176 (282)
257 1znw_A Guanylate kinase, GMP k 98.0 3.7E-06 1.3E-10 53.2 3.0 29 17-49 16-44 (207)
258 3b9q_A Chloroplast SRP recepto 98.0 1.7E-06 5.7E-11 58.4 1.2 32 13-48 92-123 (302)
259 3vaa_A Shikimate kinase, SK; s 98.0 6.7E-06 2.3E-10 51.7 3.8 34 9-45 13-46 (199)
260 2dpy_A FLII, flagellum-specifi 98.0 2.4E-06 8.3E-11 60.3 1.9 48 9-69 146-193 (438)
261 3euj_A Chromosome partition pr 97.9 2.7E-06 9.2E-11 60.9 1.9 35 9-48 18-52 (483)
262 2qpt_A EH domain-containing pr 97.9 1.2E-05 4.2E-10 58.1 4.8 27 24-50 65-91 (550)
263 1lvg_A Guanylate kinase, GMP k 97.9 7.9E-06 2.7E-10 51.6 3.3 21 25-45 5-25 (198)
264 2iw3_A Elongation factor 3A; a 97.9 1.1E-05 3.6E-10 62.0 4.5 38 8-48 448-485 (986)
265 2eyu_A Twitching motility prot 97.9 1.1E-06 3.8E-11 58.1 -0.8 34 9-48 15-48 (261)
266 3avx_A Elongation factor TS, e 97.9 3.6E-06 1.2E-10 65.7 1.7 66 20-85 292-373 (1289)
267 4a9a_A Ribosome-interacting GT 97.9 3.9E-05 1.3E-09 53.3 6.8 55 25-81 73-129 (376)
268 1zp6_A Hypothetical protein AT 97.9 1.2E-05 4.1E-10 49.8 3.8 27 18-48 6-32 (191)
269 3ux8_A Excinuclease ABC, A sub 97.9 8.5E-06 2.9E-10 59.9 3.4 31 8-41 31-61 (670)
270 1s96_A Guanylate kinase, GMP k 97.9 1.2E-05 4.2E-10 51.8 3.8 29 16-48 11-39 (219)
271 2qag_B Septin-6, protein NEDD5 97.9 4E-06 1.4E-10 59.2 1.6 34 11-48 30-65 (427)
272 2obl_A ESCN; ATPase, hydrolase 97.9 4.2E-06 1.4E-10 57.5 1.6 34 10-48 61-94 (347)
273 2og2_A Putative signal recogni 97.8 3.6E-06 1.2E-10 58.1 1.2 32 13-48 149-180 (359)
274 1kgd_A CASK, peripheral plasma 97.8 2E-05 6.9E-10 48.8 3.9 22 25-46 6-27 (180)
275 1ye8_A Protein THEP1, hypothet 97.8 1.7E-05 5.7E-10 49.6 3.5 22 26-48 2-23 (178)
276 2yhs_A FTSY, cell division pro 97.8 6.9E-06 2.4E-10 59.0 1.9 33 12-48 284-316 (503)
277 2j69_A Bacterial dynamin-like 97.8 3E-05 1E-09 57.5 5.3 25 25-49 70-94 (695)
278 3ux8_A Excinuclease ABC, A sub 97.8 1.3E-05 4.6E-10 58.9 3.3 31 9-42 336-366 (670)
279 2j41_A Guanylate kinase; GMP, 97.8 1.7E-05 5.9E-10 49.5 3.4 28 18-49 3-30 (207)
280 3ozx_A RNAse L inhibitor; ATP 97.7 3.2E-05 1.1E-09 55.9 4.7 24 25-49 26-49 (538)
281 3szr_A Interferon-induced GTP- 97.7 1.6E-05 5.6E-10 58.0 3.2 37 26-71 47-84 (608)
282 2qm8_A GTPase/ATPase; G protei 97.7 1E-05 3.5E-10 55.2 2.0 34 9-45 43-76 (337)
283 3ney_A 55 kDa erythrocyte memb 97.7 2.9E-05 9.8E-10 49.6 3.9 22 25-46 20-41 (197)
284 3j16_B RLI1P; ribosome recycli 97.7 3.5E-05 1.2E-09 56.5 4.7 44 10-58 362-407 (608)
285 3j16_B RLI1P; ribosome recycli 97.7 3.5E-05 1.2E-09 56.4 4.5 28 18-49 100-127 (608)
286 1u0l_A Probable GTPase ENGC; p 97.7 1.7E-05 5.8E-10 53.2 2.6 23 25-48 170-192 (301)
287 3a00_A Guanylate kinase, GMP k 97.7 2.7E-05 9.1E-10 48.5 3.2 23 25-48 2-24 (186)
288 2ehv_A Hypothetical protein PH 97.7 3.6E-05 1.2E-09 49.2 3.7 26 17-45 26-51 (251)
289 1lw7_A Transcriptional regulat 97.7 1.2E-05 4.2E-10 55.0 1.5 32 13-48 160-193 (365)
290 3c8u_A Fructokinase; YP_612366 97.7 3.5E-05 1.2E-09 48.7 3.5 23 25-48 23-45 (208)
291 1sq5_A Pantothenate kinase; P- 97.7 6.7E-06 2.3E-10 55.3 0.0 23 25-48 81-103 (308)
292 2npi_A Protein CLP1; CLP1-PCF1 97.6 1.3E-05 4.4E-10 57.0 1.4 32 13-48 130-161 (460)
293 1rj9_A FTSY, signal recognitio 97.6 1.5E-05 5E-10 53.9 1.5 23 25-48 103-125 (304)
294 1tf7_A KAIC; homohexamer, hexa 97.6 8.5E-06 2.9E-10 58.4 0.3 37 9-48 26-64 (525)
295 4a74_A DNA repair and recombin 97.6 4.2E-05 1.5E-09 48.3 3.4 26 18-46 22-47 (231)
296 3asz_A Uridine kinase; cytidin 97.6 3.4E-05 1.1E-09 48.6 2.8 23 25-48 7-29 (211)
297 3tau_A Guanylate kinase, GMP k 97.6 6.1E-05 2.1E-09 47.7 3.9 23 25-47 9-31 (208)
298 3b85_A Phosphate starvation-in 97.6 2.5E-05 8.6E-10 50.0 1.8 26 19-48 20-45 (208)
299 2oap_1 GSPE-2, type II secreti 97.6 1.8E-05 6.1E-10 56.9 1.1 34 11-48 250-283 (511)
300 3aez_A Pantothenate kinase; tr 97.6 4.9E-05 1.7E-09 51.4 3.2 27 18-48 87-113 (312)
301 3ec2_A DNA replication protein 97.5 5E-05 1.7E-09 46.8 2.9 21 25-45 39-59 (180)
302 1cr0_A DNA primase/helicase; R 97.5 3.3E-05 1.1E-09 51.2 2.1 34 10-46 24-57 (296)
303 3kta_A Chromosome segregation 97.5 8.1E-05 2.8E-09 45.7 3.6 29 12-45 18-46 (182)
304 1ex7_A Guanylate kinase; subst 97.5 7.5E-05 2.6E-09 47.2 3.3 22 26-47 3-24 (186)
305 1t9h_A YLOQ, probable GTPase E 97.5 3E-05 1E-09 52.5 1.4 27 18-48 170-196 (307)
306 2f1r_A Molybdopterin-guanine d 97.5 1.1E-05 3.6E-10 50.3 -0.7 23 25-48 3-25 (171)
307 2i3b_A HCR-ntpase, human cance 97.5 9E-05 3.1E-09 46.7 3.4 23 25-48 2-24 (189)
308 3e70_C DPA, signal recognition 97.5 2.4E-05 8.2E-10 53.3 0.8 21 25-45 130-150 (328)
309 2qor_A Guanylate kinase; phosp 97.5 0.00011 3.8E-09 46.2 3.7 26 18-46 9-34 (204)
310 4eun_A Thermoresistant glucoki 97.5 0.00012 4E-09 45.9 3.8 20 25-44 30-49 (200)
311 2yv5_A YJEQ protein; hydrolase 97.4 6.1E-05 2.1E-09 50.6 2.5 21 25-45 166-186 (302)
312 3nwj_A ATSK2; P loop, shikimat 97.4 2.2E-05 7.4E-10 51.7 0.3 34 9-45 33-69 (250)
313 3uie_A Adenylyl-sulfate kinase 97.4 0.00015 5.1E-09 45.5 4.1 20 25-44 26-45 (200)
314 1f5n_A Interferon-induced guan 97.4 0.00016 5.6E-09 52.8 4.7 60 24-83 38-103 (592)
315 2bdt_A BH3686; alpha-beta prot 97.4 0.00011 3.7E-09 45.5 3.3 21 25-45 3-23 (189)
316 1kag_A SKI, shikimate kinase I 97.4 0.00013 4.5E-09 44.3 3.6 22 25-47 5-26 (173)
317 2bbw_A Adenylate kinase 4, AK4 97.4 0.00012 4.1E-09 47.3 3.5 21 25-46 28-48 (246)
318 1y63_A LMAJ004144AAA protein; 97.4 0.00015 5.2E-09 44.9 3.8 29 15-46 4-32 (184)
319 2x8a_A Nuclear valosin-contain 97.4 5.2E-05 1.8E-09 50.2 1.4 31 11-47 36-66 (274)
320 2qt1_A Nicotinamide riboside k 97.4 0.00017 6E-09 45.2 3.8 24 25-49 22-45 (207)
321 1knq_A Gluconate kinase; ALFA/ 97.4 0.00019 6.6E-09 43.8 3.9 21 25-45 9-29 (175)
322 2rcn_A Probable GTPase ENGC; Y 97.4 0.00021 7.1E-09 49.4 4.4 22 25-46 216-237 (358)
323 2wsm_A Hydrogenase expression/ 97.4 0.00013 4.4E-09 46.0 3.1 24 25-48 31-54 (221)
324 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00017 5.8E-09 45.4 3.7 27 17-46 19-45 (235)
325 4aby_A DNA repair protein RECN 97.3 4.8E-05 1.6E-09 52.5 0.9 31 10-45 50-80 (415)
326 1ly1_A Polynucleotide kinase; 97.3 0.00025 8.6E-09 43.1 3.8 22 25-46 3-24 (181)
327 4e22_A Cytidylate kinase; P-lo 97.3 0.00022 7.4E-09 46.5 3.7 21 25-46 28-48 (252)
328 3kb2_A SPBC2 prophage-derived 97.3 0.00022 7.4E-09 43.1 3.4 21 26-46 3-23 (173)
329 2www_A Methylmalonic aciduria 97.3 0.00027 9.3E-09 48.3 4.0 22 25-46 75-96 (349)
330 1jjv_A Dephospho-COA kinase; P 97.3 0.00025 8.5E-09 44.4 3.5 22 25-47 3-24 (206)
331 2cvh_A DNA repair and recombin 97.3 0.00029 9.8E-09 44.2 3.9 26 18-46 17-42 (220)
332 1cke_A CK, MSSA, protein (cyti 97.2 0.0003 1E-08 44.5 3.9 21 25-45 6-26 (227)
333 3cm0_A Adenylate kinase; ATP-b 97.2 0.00025 8.6E-09 43.5 3.4 21 25-45 5-25 (186)
334 1n0w_A DNA repair protein RAD5 97.2 0.00027 9.3E-09 44.9 3.7 27 18-47 21-47 (243)
335 1wb9_A DNA mismatch repair pro 97.2 0.00025 8.4E-09 53.5 3.9 33 9-46 596-628 (800)
336 1svm_A Large T antigen; AAA+ f 97.2 0.00011 3.9E-09 50.9 1.9 33 10-45 158-190 (377)
337 1ixz_A ATP-dependent metallopr 97.2 0.00015 5.1E-09 46.9 2.2 20 27-47 52-71 (254)
338 3pih_A Uvrabc system protein A 97.2 0.00012 4.2E-09 55.9 2.0 30 9-41 598-627 (916)
339 2vp4_A Deoxynucleoside kinase; 97.2 0.00022 7.4E-09 45.8 2.9 22 25-47 21-42 (230)
340 3t61_A Gluconokinase; PSI-biol 97.2 0.00027 9.1E-09 44.2 3.3 22 25-46 19-40 (202)
341 3thx_A DNA mismatch repair pro 97.2 0.00044 1.5E-08 53.0 4.9 33 9-45 650-682 (934)
342 1qhx_A CPT, protein (chloramph 97.2 0.00037 1.3E-08 42.5 3.8 22 25-46 4-25 (178)
343 3thx_B DNA mismatch repair pro 97.2 0.00022 7.4E-09 54.5 3.2 33 8-43 660-692 (918)
344 3lw7_A Adenylate kinase relate 97.2 0.00032 1.1E-08 42.1 3.3 20 25-44 2-21 (179)
345 2xtz_A Guanine nucleotide-bind 97.2 2.8E-05 9.5E-10 53.6 -1.7 27 65-91 173-203 (354)
346 2if2_A Dephospho-COA kinase; a 97.1 0.0003 1E-08 43.9 3.1 22 25-46 2-23 (204)
347 2vf7_A UVRA2, excinuclease ABC 97.1 0.00024 8.3E-09 53.8 3.1 30 10-42 512-541 (842)
348 1nij_A Hypothetical protein YJ 97.1 0.0001 3.5E-09 49.7 0.9 23 25-47 5-27 (318)
349 2rhm_A Putative kinase; P-loop 97.1 0.00042 1.4E-08 42.6 3.7 22 25-46 6-27 (193)
350 4eaq_A DTMP kinase, thymidylat 97.1 0.00049 1.7E-08 44.4 4.1 22 25-46 27-48 (229)
351 2v54_A DTMP kinase, thymidylat 97.1 0.0005 1.7E-08 42.7 4.0 22 25-46 5-26 (204)
352 2ygr_A Uvrabc system protein A 97.1 0.00017 5.7E-09 55.5 2.0 32 9-43 656-687 (993)
353 1iy2_A ATP-dependent metallopr 97.1 0.00022 7.4E-09 46.9 2.3 20 27-47 76-95 (278)
354 1kht_A Adenylate kinase; phosp 97.1 0.00046 1.6E-08 42.3 3.6 21 25-45 4-24 (192)
355 3ec1_A YQEH GTPase; atnos1, at 97.1 0.00066 2.3E-08 46.8 4.7 23 25-47 163-185 (369)
356 1rz3_A Hypothetical protein rb 97.1 0.00046 1.6E-08 43.3 3.7 21 25-45 23-43 (201)
357 1jbk_A CLPB protein; beta barr 97.1 0.00042 1.4E-08 41.9 3.3 22 25-46 44-65 (195)
358 2jaq_A Deoxyguanosine kinase; 97.1 0.00045 1.5E-08 42.7 3.5 21 26-46 2-22 (205)
359 3tqc_A Pantothenate kinase; bi 97.1 0.00052 1.8E-08 46.7 4.0 24 23-47 91-114 (321)
360 2plr_A DTMP kinase, probable t 97.1 0.00062 2.1E-08 42.3 4.1 22 25-46 5-26 (213)
361 3qf7_A RAD50; ABC-ATPase, ATPa 97.1 0.00044 1.5E-08 47.5 3.6 28 12-43 15-42 (365)
362 3trf_A Shikimate kinase, SK; a 97.1 0.0005 1.7E-08 42.2 3.5 22 25-46 6-27 (185)
363 2ewv_A Twitching motility prot 97.0 0.00052 1.8E-08 47.3 3.8 23 25-48 137-159 (372)
364 1nlf_A Regulatory protein REPA 97.0 0.00043 1.5E-08 45.5 3.2 26 18-46 27-52 (279)
365 1tev_A UMP-CMP kinase; ploop, 97.0 0.00063 2.1E-08 41.7 3.7 21 25-45 4-24 (196)
366 1np6_A Molybdopterin-guanine d 97.0 0.00051 1.8E-08 42.8 3.3 22 25-46 7-28 (174)
367 1qhl_A Protein (cell division 97.0 3.1E-05 1.1E-09 50.4 -2.4 22 26-48 29-50 (227)
368 3fb4_A Adenylate kinase; psych 97.0 0.00055 1.9E-08 43.0 3.5 21 26-46 2-22 (216)
369 1nks_A Adenylate kinase; therm 97.0 0.00048 1.6E-08 42.2 3.1 21 26-46 3-23 (194)
370 1in4_A RUVB, holliday junction 97.0 0.00033 1.1E-08 47.3 2.5 23 25-48 52-74 (334)
371 2dr3_A UPF0273 protein PH0284; 97.0 0.00051 1.8E-08 43.7 3.3 26 18-46 20-45 (247)
372 1ewq_A DNA mismatch repair pro 97.0 0.00047 1.6E-08 51.8 3.5 32 9-47 567-598 (765)
373 2yvu_A Probable adenylyl-sulfa 97.0 0.00082 2.8E-08 41.4 4.1 21 25-45 14-34 (186)
374 3dl0_A Adenylate kinase; phosp 97.0 0.00059 2E-08 43.0 3.5 21 26-46 2-22 (216)
375 2p67_A LAO/AO transport system 97.0 0.00024 8.1E-09 48.4 1.7 31 12-45 47-77 (341)
376 2cdn_A Adenylate kinase; phosp 97.0 0.00089 3.1E-08 41.7 4.1 24 23-46 19-42 (201)
377 1odf_A YGR205W, hypothetical 3 97.0 0.00077 2.6E-08 45.1 4.0 21 24-44 31-51 (290)
378 2r6f_A Excinuclease ABC subuni 97.0 0.00019 6.6E-09 55.1 1.1 32 9-43 638-669 (972)
379 1via_A Shikimate kinase; struc 97.0 0.00063 2.2E-08 41.5 3.3 20 26-45 6-25 (175)
380 2pez_A Bifunctional 3'-phospho 97.0 0.00089 3E-08 41.0 4.0 21 25-45 6-26 (179)
381 2ze6_A Isopentenyl transferase 96.9 0.00067 2.3E-08 44.3 3.3 21 26-46 3-23 (253)
382 1qf9_A UMP/CMP kinase, protein 96.9 0.001 3.5E-08 40.7 4.0 22 25-46 7-28 (194)
383 1zu4_A FTSY; GTPase, signal re 96.9 0.00089 3.1E-08 45.4 4.0 31 12-45 96-126 (320)
384 2o8b_B DNA mismatch repair pro 96.9 0.00095 3.2E-08 51.6 4.4 33 9-45 770-809 (1022)
385 1gvn_B Zeta; postsegregational 96.9 0.00091 3.1E-08 44.5 3.8 22 25-46 34-55 (287)
386 3iij_A Coilin-interacting nucl 96.9 0.00082 2.8E-08 41.1 3.3 21 25-45 12-32 (180)
387 1nn5_A Similar to deoxythymidy 96.9 0.00085 2.9E-08 41.9 3.5 21 25-45 10-30 (215)
388 2c95_A Adenylate kinase 1; tra 96.9 0.00078 2.7E-08 41.5 3.2 21 25-45 10-30 (196)
389 2p65_A Hypothetical protein PF 96.9 0.00055 1.9E-08 41.4 2.5 22 25-46 44-65 (187)
390 3jvv_A Twitching mobility prot 96.9 0.00094 3.2E-08 45.9 3.9 21 25-45 124-144 (356)
391 2o5v_A DNA replication and rep 96.9 0.00078 2.7E-08 46.4 3.5 30 11-44 17-46 (359)
392 3h2y_A GTPase family protein; 96.9 0.00095 3.2E-08 46.0 3.9 23 25-47 161-183 (368)
393 3tlx_A Adenylate kinase 2; str 96.9 0.0011 3.6E-08 43.0 3.9 22 25-46 30-51 (243)
394 3bos_A Putative DNA replicatio 96.9 0.0008 2.8E-08 42.3 3.3 22 25-46 53-74 (242)
395 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00082 2.8E-08 40.6 3.2 18 26-43 25-42 (149)
396 1vma_A Cell division protein F 96.8 0.0012 4E-08 44.6 4.1 22 25-46 105-126 (306)
397 2kjq_A DNAA-related protein; s 96.8 0.00058 2E-08 41.3 2.4 23 25-48 37-59 (149)
398 1aky_A Adenylate kinase; ATP:A 96.8 0.0011 3.8E-08 41.9 3.8 22 25-46 5-26 (220)
399 2wwf_A Thymidilate kinase, put 96.8 0.00098 3.4E-08 41.6 3.4 21 25-45 11-31 (212)
400 2xtz_A Guanine nucleotide-bind 96.8 0.0011 3.8E-08 45.6 3.9 26 19-44 4-29 (354)
401 1njg_A DNA polymerase III subu 96.8 0.00094 3.2E-08 41.6 3.3 21 26-46 47-67 (250)
402 1pzn_A RAD51, DNA repair and r 96.8 0.00091 3.1E-08 45.7 3.4 29 16-47 126-154 (349)
403 1zd8_A GTP:AMP phosphotransfer 96.8 0.001 3.5E-08 42.3 3.3 21 25-45 8-28 (227)
404 3sr0_A Adenylate kinase; phosp 96.8 0.0011 3.9E-08 42.2 3.5 21 26-46 2-22 (206)
405 1uf9_A TT1252 protein; P-loop, 96.8 0.0013 4.3E-08 40.7 3.6 22 25-46 9-30 (203)
406 1m7g_A Adenylylsulfate kinase; 96.8 0.0015 5.1E-08 41.1 3.9 20 25-44 26-45 (211)
407 1vht_A Dephospho-COA kinase; s 96.8 0.0016 5.6E-08 41.0 4.1 22 25-46 5-26 (218)
408 2chg_A Replication factor C sm 96.8 0.0011 3.9E-08 40.9 3.3 21 26-46 40-60 (226)
409 1lv7_A FTSH; alpha/beta domain 96.7 0.0011 3.8E-08 42.8 3.3 21 25-45 46-66 (257)
410 2z0h_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 40.7 3.3 21 26-46 2-22 (197)
411 3p32_A Probable GTPase RV1496/ 96.7 0.0014 4.9E-08 44.7 3.9 23 24-46 79-101 (355)
412 1zak_A Adenylate kinase; ATP:A 96.7 0.00097 3.3E-08 42.2 2.9 22 25-46 6-27 (222)
413 1e4v_A Adenylate kinase; trans 96.7 0.0011 3.7E-08 41.8 3.1 21 26-46 2-22 (214)
414 2pt5_A Shikimate kinase, SK; a 96.7 0.0014 4.8E-08 39.4 3.5 21 26-46 2-22 (168)
415 1zcb_A G alpha I/13; GTP-bindi 96.7 0.0014 4.9E-08 45.1 3.8 21 24-44 33-53 (362)
416 1xjc_A MOBB protein homolog; s 96.7 0.0013 4.4E-08 40.9 3.3 22 25-46 5-26 (169)
417 1uj2_A Uridine-cytidine kinase 96.7 0.0017 5.7E-08 42.1 3.9 38 7-46 7-44 (252)
418 1e6c_A Shikimate kinase; phosp 96.7 0.0014 4.8E-08 39.6 3.3 22 25-46 3-24 (173)
419 2bwj_A Adenylate kinase 5; pho 96.7 0.0013 4.4E-08 40.6 3.1 22 25-46 13-34 (199)
420 1p9r_A General secretion pathw 96.7 0.0016 5.4E-08 45.8 3.9 22 25-46 168-189 (418)
421 1ukz_A Uridylate kinase; trans 96.7 0.0023 7.9E-08 39.7 4.3 21 25-45 16-36 (203)
422 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0019 6.4E-08 42.2 4.0 22 25-46 5-26 (260)
423 2p5t_B PEZT; postsegregational 96.7 0.001 3.6E-08 43.2 2.7 22 25-46 33-54 (253)
424 2iyv_A Shikimate kinase, SK; t 96.7 0.0014 4.8E-08 40.1 3.2 22 25-46 3-24 (184)
425 2vli_A Antibiotic resistance p 96.7 0.00091 3.1E-08 40.8 2.3 21 25-45 6-26 (183)
426 1yrb_A ATP(GTP)binding protein 96.7 0.0022 7.6E-08 41.2 4.2 26 20-45 10-35 (262)
427 1gtv_A TMK, thymidylate kinase 96.7 0.0004 1.4E-08 43.4 0.7 20 26-45 2-21 (214)
428 3qks_A DNA double-strand break 96.7 0.0018 6.1E-08 41.0 3.7 17 26-42 25-41 (203)
429 3n70_A Transport activator; si 96.7 0.0017 5.8E-08 38.7 3.4 22 25-47 25-46 (145)
430 2xb4_A Adenylate kinase; ATP-b 96.6 0.0016 5.5E-08 41.5 3.5 21 26-46 2-22 (223)
431 2pbr_A DTMP kinase, thymidylat 96.6 0.0017 5.9E-08 39.7 3.4 21 26-46 2-22 (195)
432 1bif_A 6-phosphofructo-2-kinas 96.6 0.0017 5.9E-08 45.8 3.8 24 24-47 39-62 (469)
433 2w58_A DNAI, primosome compone 96.6 0.0016 5.5E-08 40.5 3.3 22 25-46 55-76 (202)
434 3k1j_A LON protease, ATP-depen 96.6 0.00039 1.3E-08 50.6 0.4 36 10-49 49-84 (604)
435 1sxj_C Activator 1 40 kDa subu 96.6 0.00047 1.6E-08 46.5 0.8 35 11-46 34-68 (340)
436 1ltq_A Polynucleotide kinase; 96.6 0.0021 7.1E-08 42.4 3.8 22 25-46 3-24 (301)
437 3lda_A DNA repair protein RAD5 96.6 0.0015 5.1E-08 45.7 3.2 21 25-45 179-199 (400)
438 1e69_A Chromosome segregation 96.6 0.0013 4.5E-08 44.2 2.8 28 13-44 17-44 (322)
439 3r20_A Cytidylate kinase; stru 96.6 0.0019 6.6E-08 42.0 3.5 21 25-45 10-30 (233)
440 1w1w_A Structural maintenance 96.6 0.002 6.7E-08 44.9 3.7 20 25-44 27-46 (430)
441 2px0_A Flagellar biosynthesis 96.6 0.0018 6.2E-08 43.4 3.4 21 25-45 106-126 (296)
442 3b9p_A CG5977-PA, isoform A; A 96.5 0.0018 6.2E-08 42.5 3.2 22 25-46 55-76 (297)
443 2qby_A CDC6 homolog 1, cell di 96.5 0.0016 5.4E-08 43.7 3.0 22 25-46 46-67 (386)
444 3q5d_A Atlastin-1; G protein, 96.5 0.0064 2.2E-07 43.1 6.1 23 24-46 67-89 (447)
445 3qkt_A DNA double-strand break 96.5 0.0022 7.6E-08 43.4 3.7 18 26-43 25-42 (339)
446 2qen_A Walker-type ATPase; unk 96.5 0.002 6.7E-08 42.8 3.3 23 25-47 32-54 (350)
447 1sxj_E Activator 1 40 kDa subu 96.5 0.002 7E-08 43.2 3.4 20 27-46 39-58 (354)
448 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0021 7.2E-08 41.2 3.4 21 25-45 40-60 (262)
449 3umf_A Adenylate kinase; rossm 96.5 0.0021 7.1E-08 41.4 3.3 21 26-46 31-51 (217)
450 3h4m_A Proteasome-activating n 96.5 0.002 6.8E-08 42.0 3.2 22 25-46 52-73 (285)
451 1tf7_A KAIC; homohexamer, hexa 96.5 0.0019 6.4E-08 46.3 3.3 27 17-46 277-303 (525)
452 3be4_A Adenylate kinase; malar 96.5 0.002 6.8E-08 40.8 3.1 21 25-45 6-26 (217)
453 1q3t_A Cytidylate kinase; nucl 96.5 0.003 1E-07 40.5 3.9 21 25-45 17-37 (236)
454 1ak2_A Adenylate kinase isoenz 96.4 0.0026 8.8E-08 40.7 3.5 21 25-45 17-37 (233)
455 3cr8_A Sulfate adenylyltranfer 96.4 0.0013 4.4E-08 47.8 2.3 27 18-48 366-392 (552)
456 1fnn_A CDC6P, cell division co 96.4 0.0023 7.8E-08 43.2 3.3 21 26-46 46-66 (389)
457 4fcw_A Chaperone protein CLPB; 96.4 0.0037 1.3E-07 41.1 4.2 21 25-45 48-68 (311)
458 1zuh_A Shikimate kinase; alpha 96.4 0.0028 9.7E-08 38.2 3.4 21 25-45 8-28 (168)
459 3cf0_A Transitional endoplasmi 96.4 0.0025 8.6E-08 42.4 3.3 21 25-45 50-70 (301)
460 1l8q_A Chromosomal replication 96.4 0.0024 8.2E-08 42.6 3.2 22 25-46 38-59 (324)
461 2fna_A Conserved hypothetical 96.4 0.0021 7.3E-08 42.6 2.9 22 26-47 32-53 (357)
462 2zts_A Putative uncharacterize 96.4 0.0034 1.2E-07 39.8 3.7 22 25-46 31-52 (251)
463 3syl_A Protein CBBX; photosynt 96.4 0.0034 1.2E-07 41.3 3.8 19 25-43 68-86 (309)
464 2f6r_A COA synthase, bifunctio 96.4 0.0036 1.2E-07 41.4 3.9 22 24-45 75-96 (281)
465 2qmh_A HPR kinase/phosphorylas 96.3 0.0025 8.5E-08 40.9 2.9 24 25-48 35-58 (205)
466 1ypw_A Transitional endoplasmi 96.3 0.002 6.9E-08 48.5 2.8 23 25-48 239-261 (806)
467 1ls1_A Signal recognition part 96.3 0.0038 1.3E-07 41.7 3.9 21 25-45 99-119 (295)
468 1ofh_A ATP-dependent HSL prote 96.3 0.003 1E-07 41.4 3.3 21 25-45 51-71 (310)
469 3exa_A TRNA delta(2)-isopenten 96.3 0.0042 1.4E-07 42.4 4.0 23 25-47 4-26 (322)
470 3a8t_A Adenylate isopentenyltr 96.3 0.0033 1.1E-07 43.2 3.5 23 25-47 41-63 (339)
471 3foz_A TRNA delta(2)-isopenten 96.3 0.0045 1.5E-07 42.1 4.1 23 25-47 11-33 (316)
472 3crm_A TRNA delta(2)-isopenten 96.3 0.0042 1.4E-07 42.3 3.9 22 25-46 6-27 (323)
473 2dhr_A FTSH; AAA+ protein, hex 96.3 0.0015 5.1E-08 46.9 1.8 21 26-47 66-86 (499)
474 1zcb_A G alpha I/13; GTP-bindi 96.3 0.013 4.4E-07 40.4 6.3 27 63-91 195-221 (362)
475 1d2n_A N-ethylmaleimide-sensit 96.3 0.0048 1.6E-07 40.1 4.0 23 24-46 64-86 (272)
476 1cip_A Protein (guanine nucleo 96.3 0.0038 1.3E-07 42.9 3.7 23 22-44 30-52 (353)
477 3co5_A Putative two-component 96.3 0.0015 5.1E-08 38.9 1.4 23 25-48 28-50 (143)
478 3m6a_A ATP-dependent protease 96.3 0.0021 7.3E-08 46.3 2.5 22 25-47 109-130 (543)
479 3ice_A Transcription terminati 96.2 0.0033 1.1E-07 44.3 3.2 29 13-44 166-194 (422)
480 2v1u_A Cell division control p 96.2 0.0029 9.8E-08 42.5 2.8 22 25-46 45-66 (387)
481 1sxj_D Activator 1 41 kDa subu 96.2 0.0037 1.3E-07 41.7 3.3 20 27-46 61-80 (353)
482 3zvl_A Bifunctional polynucleo 96.2 0.0033 1.1E-07 43.8 3.1 22 25-46 259-280 (416)
483 3t15_A Ribulose bisphosphate c 96.2 0.0033 1.1E-07 41.8 2.9 21 25-45 37-57 (293)
484 3hr8_A Protein RECA; alpha and 96.2 0.004 1.4E-07 42.9 3.4 22 25-46 62-83 (356)
485 3d3q_A TRNA delta(2)-isopenten 96.2 0.0039 1.3E-07 42.8 3.3 22 25-46 8-29 (340)
486 1azs_C GS-alpha; complex (lyas 96.1 0.0029 1E-07 44.3 2.7 36 55-92 203-238 (402)
487 3ake_A Cytidylate kinase; CMP 96.1 0.0049 1.7E-07 38.2 3.5 21 26-46 4-24 (208)
488 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0042 1.4E-07 41.8 3.2 22 25-46 46-67 (322)
489 3uk6_A RUVB-like 2; hexameric 96.1 0.0036 1.2E-07 42.1 2.9 22 25-46 71-92 (368)
490 3pfi_A Holliday junction ATP-d 96.1 0.0044 1.5E-07 41.4 3.3 22 25-46 56-77 (338)
491 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0016 5.5E-08 45.1 1.1 32 10-42 11-42 (359)
492 2grj_A Dephospho-COA kinase; T 96.1 0.0071 2.4E-07 38.0 4.0 24 23-46 11-34 (192)
493 3tqf_A HPR(Ser) kinase; transf 96.1 0.0043 1.5E-07 39.1 3.0 23 25-47 17-39 (181)
494 2bjv_A PSP operon transcriptio 96.1 0.0054 1.8E-07 39.7 3.5 22 25-47 30-51 (265)
495 3auy_A DNA double-strand break 96.0 0.0047 1.6E-07 42.3 3.3 28 12-43 17-44 (371)
496 2qby_B CDC6 homolog 3, cell di 96.0 0.0042 1.4E-07 41.9 3.0 22 25-46 46-67 (384)
497 1u0l_A Probable GTPase ENGC; p 96.0 0.00022 7.4E-09 47.8 -3.4 48 39-91 32-81 (301)
498 1cip_A Protein (guanine nucleo 96.0 0.0049 1.7E-07 42.3 3.3 26 63-90 187-212 (353)
499 3v9p_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 40.3 2.8 21 25-45 26-46 (227)
500 3eie_A Vacuolar protein sortin 96.0 0.0048 1.7E-07 41.3 3.2 21 25-45 52-72 (322)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.80 E-value=4.1e-20 Score=119.87 Aligned_cols=67 Identities=22% Similarity=0.370 Sum_probs=52.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.++||++||++|||||||+.||+.+.|.++|.||.+ +| .+.+.+++..+++++|||+|||+|..+++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 359999999999999999999999999999999954 55 67888999999999999999999988764
No 2
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.70 E-value=1.5e-16 Score=99.83 Aligned_cols=65 Identities=74% Similarity=1.231 Sum_probs=59.0
Q ss_pred CCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 21 DVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
...++|++++|++|||||||+.+++.+.|...+.|+.+.|.+.+.+++..+.+++|||+|+++|.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 81 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ 81 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh
Confidence 45569999999999999999999999999988888877788889999999999999999999864
No 3
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.67 E-value=7.9e-16 Score=96.55 Aligned_cols=66 Identities=26% Similarity=0.353 Sum_probs=54.9
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
...+||+++|+.|||||||+.+++.+.|...+.|+.+ .|...+.+++..+.+++|||+|+++|..+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH
Confidence 4568999999999999999999999999988888844 56667888999999999999999998764
No 4
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.65 E-value=8.1e-16 Score=97.74 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=58.2
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|+++|..+++.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHh
Confidence 458999999999999999999999999888888844 56667788999999999999999999887653
No 5
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.64 E-value=1.8e-15 Score=93.53 Aligned_cols=62 Identities=45% Similarity=0.907 Sum_probs=54.1
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
..++|++++|++|||||||+.+++.+.|.+ +.|+.+ .|.+.+.+++..+.+++|||+|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCchh
Confidence 456999999999999999999999999987 677744 46778889999999999999999873
No 6
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.64 E-value=6.1e-16 Score=99.14 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=57.5
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
...+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|+++|..+++.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 94 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPL 94 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHH
Confidence 3459999999999999999999999999998888854 46677788899999999999999999877653
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.64 E-value=1.9e-15 Score=93.64 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=58.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
...+++++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+||++|+++|..++.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 72 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ 72 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHH
Confidence 348999999999999999999999999888888844 4677788999999999999999999977654
No 8
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.64 E-value=1e-15 Score=96.06 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=59.8
Q ss_pred CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.....+|++++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 89 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP 89 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH
Confidence 334568999999999999999999999999888888854 5666788999999999999999999987654
No 9
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.63 E-value=8.5e-16 Score=95.87 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=58.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..+|++++|++|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+||++|+++|..+++
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 73 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP 73 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH
Confidence 358999999999999999999999999888888854 4566778889999999999999999877654
No 10
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.63 E-value=1.7e-15 Score=93.78 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=58.3
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..++++++|+.|||||||+.+++.+.|..++.|+.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 71 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP 71 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH
Confidence 348999999999999999999999999888888844 4566788899999999999999999876654
No 11
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=95.41 Aligned_cols=66 Identities=27% Similarity=0.377 Sum_probs=51.3
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.++++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 86 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP 86 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH
Confidence 48999999999999999999999998888888854 4667788899999999999999999987654
No 12
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.61 E-value=4.8e-15 Score=90.59 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=52.5
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 74 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI 74 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHH
Confidence 348999999999999999999999998887778744 45 567888999999999999999998876554
No 13
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.61 E-value=1.6e-15 Score=96.84 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=58.5
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
...+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 94 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP 94 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH
Confidence 3458999999999999999999999999888888854 4566778888899999999999999887654
No 14
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=95.96 Aligned_cols=69 Identities=25% Similarity=0.373 Sum_probs=43.9
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
...+|++++|+.|||||||+.+++.+.|...+.|+.. .+...+.+++..+.+.+|||+|+++|..+++.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~ 101 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPL 101 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHH
Confidence 3458999999999999999999999998888888844 46677889999999999999999999877654
No 15
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.61 E-value=4.1e-15 Score=90.55 Aligned_cols=66 Identities=27% Similarity=0.440 Sum_probs=56.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..++++++|+.|||||||+.+++.+.+...+.|+.+ .+.+.+.+++..+.+.+||++|++++..++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 68 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR 68 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 348999999999999999999999999888888854 456677888889999999999999887543
No 16
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=3.1e-15 Score=93.80 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=58.5
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..++++++|+.|||||||+.+++.+.|...+.|+. ..+...+.+++..+.+.+||++|+++|..++.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 84 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP 84 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH
Confidence 34899999999999999999999999988888884 45666788899999999999999999987654
No 17
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.60 E-value=1.3e-14 Score=89.36 Aligned_cols=66 Identities=27% Similarity=0.337 Sum_probs=57.7
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
...+++++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 74 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR 74 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 458999999999999999999999999888888844 456778889999999999999999987654
No 18
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.60 E-value=1.4e-14 Score=87.91 Aligned_cols=64 Identities=28% Similarity=0.470 Sum_probs=55.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.++++++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+||++|++++..+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 48999999999999999999999999888888854 45677889999999999999999987543
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.60 E-value=1.1e-14 Score=90.32 Aligned_cols=68 Identities=26% Similarity=0.393 Sum_probs=59.1
Q ss_pred CCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 21 DVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
....+|++++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+||++|++++..++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 83 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR 83 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHH
Confidence 34569999999999999999999999999888888844 567778899999999999999999987654
No 20
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.60 E-value=1.1e-14 Score=90.35 Aligned_cols=66 Identities=33% Similarity=0.481 Sum_probs=54.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+++++++|+.|||||||+.+++.+.+...+.++.. .+...+.+++..+.+.+|||+|++++..++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHH
Confidence 358999999999999999999999999888888754 456778899999999999999999987664
No 21
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.60 E-value=8.6e-15 Score=91.35 Aligned_cols=71 Identities=31% Similarity=0.458 Sum_probs=51.8
Q ss_pred CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
+++..++|+++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..++..
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 88 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ 88 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC----------
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHH
Confidence 345568999999999999999999999998888877744 45667888999999999999999988776543
No 22
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.58 E-value=4.3e-15 Score=94.37 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=56.5
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
...+|++++|+.|||||||+.+++.+.+..++.++.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 96 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP 96 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 3459999999999999999999999999888888854 4567788899999999999999999987654
No 23
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.58 E-value=1.8e-14 Score=90.76 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=56.8
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.++++++|++|||||||+.+++...+...+.|+.+ ++ ...+.++|+.+.+++||++|++++..+.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~ 95 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 95 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh
Confidence 47999999999999999999999998888888844 45 6788999999999999999999987664
No 24
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.58 E-value=1.4e-14 Score=91.51 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=53.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.++++++|++|||||||+.++++..|...+.|+.+ .+ ...+.++|..+.+.+||++|++++..++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~ 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 38999999999999999999999988877778743 44 6788999999999999999999887654
No 25
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=1.2e-14 Score=92.38 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=51.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..||+++|+.|||||||+.+++.+.+...+.|+. ..+...+.+++..+.+.+|||+|++++..++.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 91 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP 91 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999999999988888874 45555678899999999999999999987654
No 26
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.58 E-value=1.8e-14 Score=87.70 Aligned_cols=65 Identities=22% Similarity=0.458 Sum_probs=56.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.++++++|+.|||||||+.+++.+.+...+.|+.+ ++ ...+.+++..+.+.+||++|++++..+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH
Confidence 48999999999999999999999999888888743 44 6778889999999999999999987654
No 27
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.58 E-value=7.4e-15 Score=92.91 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=58.0
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..+|++++|+.|||||||+.+++.+.+...+.|+. ..+...+.+++..+.+.+||++|+++|..++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 91 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRP 91 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHH
Confidence 35899999999999999999999999988888884 35656678899999999999999999877654
No 28
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.57 E-value=3e-14 Score=86.51 Aligned_cols=64 Identities=30% Similarity=0.422 Sum_probs=52.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.++++++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 68 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHH
Confidence 48999999999999999999999998888888744 45667788999999999999999987543
No 29
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.57 E-value=9e-15 Score=92.42 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=54.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|++++..++.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 90 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPY 90 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCG
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHH
Confidence 459999999999999999999999999988888844 4566677778889999999999999987654
No 30
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.57 E-value=8.8e-16 Score=94.96 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=42.8
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+++|||+|+++|..++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 74 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP 74 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH
Confidence 48999999999999999999999999888888843 3444556778889999999999999987654
No 31
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.57 E-value=1.9e-14 Score=90.96 Aligned_cols=66 Identities=26% Similarity=0.371 Sum_probs=57.5
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.++|+++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+|||+|+++|..++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 75 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITS 75 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHH
Confidence 48999999999999999999999999888878743 45 56788999999999999999999987654
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=1.8e-14 Score=87.79 Aligned_cols=64 Identities=28% Similarity=0.488 Sum_probs=55.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh
Confidence 48999999999999999999999998887878744 44 567788999999999999999987654
No 33
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=5.2e-14 Score=85.83 Aligned_cols=63 Identities=27% Similarity=0.420 Sum_probs=54.5
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
.++++++|+.|||||||+.+++.+.+...+.|+.+ .+...+..++..+.+.+|||+|++++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA 66 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 48999999999999999999999998877878743 4566677888899999999999998754
No 34
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.5e-14 Score=91.80 Aligned_cols=66 Identities=21% Similarity=0.347 Sum_probs=53.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.++|+++|+.|||||||+.+++.+.|...+.|+.+ .+ ...+.+++..+.+.+|||+|+++|..++.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 48999999999999999999999999887777743 45 56788899999999999999999987654
No 35
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.56 E-value=5.2e-14 Score=85.16 Aligned_cols=64 Identities=34% Similarity=0.490 Sum_probs=55.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.++++++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHH
Confidence 48999999999999999999999998888877744 45667888999999999999999987643
No 36
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.56 E-value=1.4e-14 Score=89.17 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=55.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECC-eEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDG-HSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g-~~i~~~i~d~~g~~~~~~~~ 88 (93)
..++++++|+.|||||||+.+++.+.|..++.|+.+ + +...+.+++ ..+.+.+||++|++++..++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 73 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKML 73 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchh
Confidence 458999999999999999999999988877777743 3 467788887 68999999999999987654
No 37
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.56 E-value=2.5e-14 Score=89.67 Aligned_cols=67 Identities=25% Similarity=0.298 Sum_probs=53.8
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
...+|++++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|+++|..++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 87 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT 87 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH
Confidence 4468999999999999999999999998877777733 44 5678889999999999999999987764
No 38
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.55 E-value=5.2e-15 Score=91.76 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=34.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
.++++++|+.|||||||+.+++.+.|...+.|+.+ ++ ...+.+++..+.+.+||++|+++|..++..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 76 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 76 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHH
Confidence 48999999999999999999999888777777743 45 567888999999999999999999876554
No 39
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=5.1e-14 Score=88.53 Aligned_cols=62 Identities=31% Similarity=0.460 Sum_probs=54.3
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
...+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+||++|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 3459999999999999999999999999888888854 4666788899999999999999987
No 40
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.55 E-value=6e-14 Score=88.26 Aligned_cols=65 Identities=29% Similarity=0.417 Sum_probs=56.3
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
..++|+++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 78 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHH
Confidence 458999999999999999999999999888888854 45667888999999999999999987543
No 41
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.55 E-value=6.3e-14 Score=86.60 Aligned_cols=66 Identities=29% Similarity=0.420 Sum_probs=56.1
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
...+||+++|+.|||||||+.+++.+.|...+.++.+ .+...+.+++..+.+.+||++|++++..+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 82 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 82 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHH
Confidence 3458999999999999999999999999888888744 45667788999999999999999987543
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=5.4e-14 Score=86.69 Aligned_cols=68 Identities=26% Similarity=0.387 Sum_probs=49.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..++++++|+.|||||||+.+++.+.+.. .+.|+.+ .+ ...+.+++..+.+.+||++|++++..++..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 79 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHH
Confidence 34899999999999999999999988853 5667633 45 456688999999999999999999876543
No 43
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=6.9e-15 Score=93.67 Aligned_cols=64 Identities=28% Similarity=0.430 Sum_probs=55.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.+|++++|+.|||||||+.+++.+.|...+.++.+ ++ .+.+.+++..+.+.+|||+|+++|..+
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 91 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 48999999999999999999999999888878744 45 677889999999999999999988643
No 44
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.54 E-value=5.1e-14 Score=87.99 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=57.2
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..++++++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+||++|++++..++.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 89 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT 89 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH
Confidence 348999999999999999999999998887777744 45 56778888999999999999999877653
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.54 E-value=3.6e-14 Score=87.26 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=52.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
..++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 72 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL 72 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 348999999999999999999999998888878744 44 677888999999999999999887544
No 46
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=4.6e-14 Score=88.35 Aligned_cols=65 Identities=26% Similarity=0.371 Sum_probs=55.7
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
...++|+++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+|||+|++++..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 71 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPA 71 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHH
Confidence 3458999999999999999999999999888888844 4566677899999999999999998754
No 47
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.54 E-value=2.5e-14 Score=87.29 Aligned_cols=65 Identities=26% Similarity=0.337 Sum_probs=51.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH
Confidence 48999999999999999999999998877777743 44 5677888889999999999999987654
No 48
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.54 E-value=2.2e-14 Score=87.42 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=40.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
.+|++++|++|||||||+++++...+.. ..++. ..+...+.+++..+.+.+||++|++++..++..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 68 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGH 68 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhh
Confidence 3899999999999999998887655433 33443 345667889999999999999999999876654
No 49
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.53 E-value=3.5e-14 Score=87.24 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=56.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..++++++|+.|||||||+.+++.+.+...+.|+.+ ++ ...+.+++..+.+.+|||+|++++..+.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 80 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 80 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH
Confidence 458999999999999999999999998888877744 44 6778889999999999999999886553
No 50
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.53 E-value=4.4e-14 Score=86.02 Aligned_cols=64 Identities=28% Similarity=0.423 Sum_probs=55.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.++++++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++++..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 71 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh
Confidence 48999999999999999999999998887777744 44 567788999999999999999987654
No 51
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=87.58 Aligned_cols=66 Identities=27% Similarity=0.348 Sum_probs=54.3
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
.++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 76 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS 76 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH
Confidence 48999999999999999999999988877777743 44 57788899999999999999999877654
No 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=86.59 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=56.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..+||+++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 91 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 348999999999999999999999998887777744 45 5677888899999999999999987653
No 53
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.53 E-value=4.7e-14 Score=86.03 Aligned_cols=65 Identities=26% Similarity=0.439 Sum_probs=56.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 72 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 72 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc
Confidence 48999999999999999999999998888888854 44 5677889999999999999999886654
No 54
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.53 E-value=4e-14 Score=89.26 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=57.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..++++++|+.|||||||+.+++.+.+...+.++.+ ++ ...+.+++..+.+.+||++|++++..++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 75 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV 75 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH
Confidence 458999999999999999999999998888888743 34 56778888899999999999999887654
No 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=6.6e-14 Score=87.28 Aligned_cols=65 Identities=29% Similarity=0.430 Sum_probs=56.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.++++++|+.|||||||+.+++.+.|...+.|+.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Confidence 48999999999999999999999999888888744 44 5678889999999999999999887653
No 56
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.53 E-value=5.7e-14 Score=86.66 Aligned_cols=67 Identities=21% Similarity=0.363 Sum_probs=56.6
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
...+|++++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 78 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 78 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh
Confidence 3458999999999999999999999998887777743 44 5678889999999999999999887654
No 57
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.52 E-value=4e-14 Score=88.46 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=54.9
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
...+||+++|+.|||||||+.+++.+.+...+.++.+ ++ ...+.+++..+.+.+|||+|++++.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR 83 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 3458999999999999999999999999887777743 44 5678889999999999999998875
No 58
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.52 E-value=9.7e-14 Score=86.68 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=56.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 82 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH
Confidence 348999999999999999999999999888877743 44 5778899999999999999999887653
No 59
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.52 E-value=4.4e-14 Score=88.84 Aligned_cols=74 Identities=16% Similarity=0.088 Sum_probs=51.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
+++++.++.. ...|++++|++|||||||+.+++.+.+. .+.|+.+.....+.+++ +.+.+|||+|+++++.++
T Consensus 12 ~~l~~~~~~~----~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~ 84 (190)
T 1m2o_B 12 DVLASLGLWN----KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGN--IKFTTFDLGGHIQARRLW 84 (190)
T ss_dssp ----------------CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETT--EEEEEEECCCSGGGTTSG
T ss_pred HHHHHhhccC----CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECC--EEEEEEECCCCHHHHHHH
Confidence 3445555432 2379999999999999999999998875 46677554556777887 788999999999987765
Q ss_pred C
Q psy6968 89 P 89 (93)
Q Consensus 89 ~ 89 (93)
+
T Consensus 85 ~ 85 (190)
T 1m2o_B 85 K 85 (190)
T ss_dssp G
T ss_pred H
Confidence 3
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.52 E-value=3.5e-14 Score=87.44 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=45.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC-CeEEEEEEEecCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID-GHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~-g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..++++++|+.|||||||+.+++.+.+...+.|+.+ ++ ...+.++ +..+.+.+||++|++++..++..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 77 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHH
Confidence 358999999999999999999999998888877743 33 5667777 56789999999999998876543
No 61
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=89.66 Aligned_cols=64 Identities=31% Similarity=0.462 Sum_probs=49.0
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.+||+++|+.|||||||+.+++.+.|...+.|+.+ ++ ...+.+++..+.+.+||++|+++|..+
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 94 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 94 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 48999999999999999999999999888888843 45 677889999999999999999987543
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.51 E-value=1e-13 Score=86.43 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=53.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeE------------------------------
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHS------------------------------ 70 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~------------------------------ 70 (93)
..++|+++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 348999999999999999999999999888888844 44 5667777765
Q ss_pred -------EEEEEEecCCCCCCCCC
Q psy6968 71 -------HLLLIRDEGVPPELQPP 87 (93)
Q Consensus 71 -------i~~~i~d~~g~~~~~~~ 87 (93)
+.+.+|||+|++++..+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~ 109 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASI 109 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTT
T ss_pred ccCccceeEEEEEECCCcHHHHHH
Confidence 89999999999998765
No 63
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.51 E-value=9.6e-14 Score=87.53 Aligned_cols=64 Identities=23% Similarity=0.423 Sum_probs=48.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
..++|+++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+||++|+++|..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 92 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS 92 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhh
Confidence 348999999999999999999999998877777744 44 56788999999999999999998754
No 64
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.51 E-value=1.3e-13 Score=84.72 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=55.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
..++++++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++++..+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 80 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 80 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhh
Confidence 348999999999999999999999998888877743 44 567788999999999999999987643
No 65
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=4.9e-14 Score=88.45 Aligned_cols=66 Identities=29% Similarity=0.441 Sum_probs=56.3
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..+||+++|+.|||||||+.+++.+.|...+.|+.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 89 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA 89 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh
Confidence 458999999999999999999999998877888854 44 5667788889999999999999887654
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=1e-13 Score=87.66 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=56.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.++|+++|+.|||||||+.+++.+.|...+.|+.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 86 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 86 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 38999999999999999999999998877777743 44 5678889999999999999999887654
No 67
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.50 E-value=1e-13 Score=84.67 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=42.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
+|++++|++|||||||+.+++...+...+.++ ...+...+.+++..+.+.+||++|++++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-----
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch
Confidence 79999999999999999999877765554443 334567788999999999999999999865
No 68
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=84.44 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=43.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
..+|++++|++|||||||+.+++.+.+...+.+.... +.+.+.+++..+.+.+||++|++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 65 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCcc
Confidence 3489999999999999999999988876655443333 4677889999999999999999884
No 69
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.50 E-value=1e-13 Score=85.90 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=55.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 75 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 75 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999999998887777744 44 567888999999999999999987543
No 70
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.49 E-value=2.7e-14 Score=90.39 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=43.5
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..|++++|++|||||||+.+++.+.+. .+.||.+.....+.+++ +.+.+|||+|+++++.+++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~ 87 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAG--MTFTTFDLGGHIQARRVWK 87 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETT--EEEEEEEECC----CCGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECC--EEEEEEECCCcHhhHHHHH
Confidence 379999999999999999999888775 46677443334677887 7889999999999987654
No 71
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.48 E-value=2.2e-13 Score=85.81 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=55.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.+|++++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+|||+|++++..+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI 73 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch
Confidence 38999999999999999999999998888778754 45 567788999999999999999887643
No 72
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.48 E-value=7.5e-14 Score=88.24 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=49.3
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
...+|++++|++|||||||+.+++...+...+.|+ .+.+.+.+.+++..+.+.+||++|++++.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~ 86 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG 86 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch
Confidence 34589999999999999999998654333223343 33456778899999999999999998864
No 73
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.48 E-value=7.3e-15 Score=91.80 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=40.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhC--CCCCCCCCCcc-ee-EEEEEE---CCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTG--AFLQEESPEGG-RF-KKEVVI---DGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~--~f~~~~~~t~~-~~-~~~~~~---~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.+|++++|++|||||||+++++.. .|...+.||.+ ++ ...+.+ ++..+.+.+|||+|+++|..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 73 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH 73 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh
Confidence 379999999999999999998874 56666777744 34 333333 3467899999999999887654
No 74
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.48 E-value=2e-13 Score=86.12 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=47.0
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHh--CCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCC-CCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMT--GAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPE-LQPP 87 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~--~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~-~~~~ 87 (93)
..+|+++||++|||||||+++|+. ..|...+.++.. .+.+.+.+++..+.+.+|||+|++. +..+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~ 73 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL 73 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH
Confidence 348999999999999999999985 445555555433 3567888999999999999999887 4433
No 75
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=86.80 Aligned_cols=67 Identities=27% Similarity=0.353 Sum_probs=49.6
Q ss_pred CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
+....++|+++|+.|||||||+.+++.+.+...+.++.+ ++ ...+.+++..+.+.+|||+|++++..
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 90 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 90 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHH
Confidence 334568999999999999999999999988877777744 44 57788899999999999999988754
No 76
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.47 E-value=1.7e-13 Score=91.81 Aligned_cols=65 Identities=26% Similarity=0.348 Sum_probs=57.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
++++++|+.|||||||+.+++.+.|..++.++.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 221 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP 221 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH
Confidence 8999999999999999999999999888888854 4566788899999999999999999876654
No 77
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.47 E-value=5e-14 Score=89.09 Aligned_cols=66 Identities=26% Similarity=0.425 Sum_probs=47.1
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..+||+++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 91 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT 91 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH
Confidence 348999999999999999999999988877777743 44 5678889999999999999998886654
No 78
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.47 E-value=5.9e-14 Score=89.20 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=50.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe-EEEEEEEecCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH-SHLLLIRDEGVPPELQP 86 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~-~i~~~i~d~~g~~~~~~ 86 (93)
...|++++|+.|||||||+.+++.+.|...+.++...+. .+.+++. .+.+.+|||+|+++|..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA-IYKVNNNRGNSLTLIDLPGHESLRF 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE-EEECSSTTCCEEEEEECCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE-EEEecCCCccEEEEEECCCChhHHH
Confidence 348999999999999999999999999888876644332 3667754 68899999999988754
No 79
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.20 E-value=4.3e-15 Score=93.99 Aligned_cols=68 Identities=25% Similarity=0.330 Sum_probs=57.3
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..++++++|+.|||||||+.+++.+.|..++.++.+ .+...+.+++..+.+.+|||+|+++|..++..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 97 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL 97 (204)
Confidence 348999999999999999999999988888878744 45566778888899999999999998876543
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.45 E-value=1.6e-13 Score=85.85 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=50.1
Q ss_pred CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
+.....+|+++|+.|||||||+.+++.+.|.. .+.||.+.....+. +..+.+.+|||+|+++|..++.
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~ 81 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFE--KGRVAFTVFDMGGAKKFRGLWE 81 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEE--ETTEEEEEEEECCSGGGGGGGG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEE--eCCEEEEEEECCCCHhHHHHHH
Confidence 34456899999999999999999999999988 78888663333333 4457899999999999876654
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.45 E-value=5.2e-14 Score=90.04 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=57.4
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
...+|++++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+|||+|+++|..++.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 82 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD 82 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHH
Confidence 4458999999999999999999888888877778754 33 56778889999999999999999887653
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.45 E-value=6.8e-14 Score=87.45 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=52.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGA-FLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..++|+++|+.|||||||+.+++.+. +..++.++.+.....+.+++ +.+.+|||+|++++..++.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~ 85 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS--LSFTVFDMSGQGRYRNLWE 85 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSS--CEEEEEEECCSTTTGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECC--EEEEEEECCCCHHHHHHHH
Confidence 34899999999999999999998877 67777788665556677776 6889999999999876543
No 83
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=1.5e-13 Score=85.63 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=47.3
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..++++++|+.|||||||+.+++.+.+. .+.||.+.....+.+++ +.+.+|||+|++++..++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~ 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINN--TRFLMWDIGGQESLRSSW 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETT--EEEEEEECCC----CGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECC--EEEEEEECCCCHhHHHHH
Confidence 3499999999999999999999988887 56777553344566766 788999999999987654
No 84
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=8.1e-13 Score=85.10 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=48.1
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHh--CCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMT--GAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~--~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
..+||++||++|||||||++||+. ..|...+.++.. .+.+.+.+++..+.+.+|||+|+++
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 99 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc
Confidence 458999999999999999999985 345555555533 3577888999999999999999886
No 85
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.43 E-value=9.4e-13 Score=80.86 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=44.3
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
..+++++|++|||||||+++++...+.....|+ .......+.+++ ..+.+|||+|+++|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCC
Confidence 489999999999999999999987665443343 222345566766 578999999999885
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.43 E-value=3e-13 Score=82.60 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=50.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
.++++++|+.|||||||+.+++.+.+.. +.|+.+.....+.+++ +.+.+|||+|++++..++
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~ 68 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKN--LKFQVWDLGGLTSIRPYW 68 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEETT--EEEEEEEECCCGGGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccceEEEEECC--EEEEEEECCCChhhhHHH
Confidence 3899999999999999999999988754 5677554445666764 688999999999887654
No 87
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.43 E-value=7.2e-14 Score=87.06 Aligned_cols=66 Identities=9% Similarity=0.077 Sum_probs=50.4
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------Ccc-ee-EEEE-EECCeEEEEEEEecCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP-----------EGG-RF-KKEV-VIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-----------t~~-~~-~~~~-~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
...+|++++|++|||||||+ +++.+.|...+.+ +.+ ++ ...+ .+++..+.+.+|||+|+++|..+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 34589999999999999999 8888888777543 322 22 2223 56778899999999999998754
Q ss_pred C
Q psy6968 88 N 88 (93)
Q Consensus 88 ~ 88 (93)
+
T Consensus 91 ~ 91 (198)
T 3t1o_A 91 R 91 (198)
T ss_dssp H
T ss_pred H
Confidence 3
No 88
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.43 E-value=4e-14 Score=89.31 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=56.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
.+||+++|+.|||||||+++++.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++++..++..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 101 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSS 101 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHH
Confidence 48999999999999999999998888777666632 34 577888999999999999999999877654
No 89
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.43 E-value=7e-13 Score=82.22 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=52.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee--EEEEEECCe---------EEEEEEEecCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF--KKEVVIDGH---------SHLLLIRDEGVPPELQP 86 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~--~~~~~~~g~---------~i~~~i~d~~g~~~~~~ 86 (93)
..++++++|+.|||||||+.+++.+.+...+.|+.+ .+ .+.+.+++. .+.+.+||++|++++..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 348999999999999999999999998887778744 44 356666766 78999999999988754
No 90
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.42 E-value=4.9e-13 Score=83.36 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=51.7
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
..++++++|+.|||||||+.+++.+.+.. +.||.+.....+.+++ +.+.+|||+|++++..++..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~ 85 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQYKN--ISFEVWDLGGQTGVRPYWRC 85 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEEETT--EEEEEEEECCSSSSCCCCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEEECC--EEEEEEECCCCHhHHHHHHH
Confidence 44999999999999999999998888764 5677553344566664 68899999999999877654
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.42 E-value=3.1e-13 Score=83.99 Aligned_cols=63 Identities=27% Similarity=0.290 Sum_probs=50.6
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..++++++|+.|||||||+.+++.+. ...+.||.+.....+.+++ +.+.+|||+|++++..++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~ 79 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRG--FKLNIWDVGGQKSLRSYW 79 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETT--EEEEEEEECCSHHHHTTG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECC--EEEEEEECCCCHhHHHHH
Confidence 34999999999999999999999887 6667788664445666765 678999999998876554
No 92
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.41 E-value=1.8e-13 Score=84.68 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=47.5
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..++++++|++|||||||+.+++.+.+ ..+.|+.+.....+.+++ +.+.+||++|++++..++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKN--LKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETT--EEEEEEEEC----CCTTGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECC--EEEEEEECCCCHhHHHHHH
Confidence 449999999999999999999988877 456677553345666765 7889999999999877654
No 93
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.41 E-value=8.2e-13 Score=81.20 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=50.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..+++++|+.|||||||+.+++.+.+...+.++. ..+ ...+.+++.. +.+|||+|+++|..++.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~ 73 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRA 73 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHH
Confidence 3899999999999999999999988877665542 222 3466777754 56999999999987764
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.41 E-value=1.2e-13 Score=85.79 Aligned_cols=64 Identities=25% Similarity=0.340 Sum_probs=50.3
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
...++++++|+.|||||||+.+++.+.| ..+.|+.+.....+.+++ +.+.+||++|++++..++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~ 82 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINN--TRFLMWDIGGQESLRSSW 82 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETT--EEEEEEEESSSGGGTCGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECC--EEEEEEECCCCHhHHHHH
Confidence 3458999999999999999999999888 456677553334566766 788999999999987654
No 95
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.41 E-value=2.2e-14 Score=90.30 Aligned_cols=64 Identities=25% Similarity=0.350 Sum_probs=28.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhC--CCCCCCCCCcc-ee-EEEEEECCe--EEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTG--AFLQEESPEGG-RF-KKEVVIDGH--SHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~--~f~~~~~~t~~-~~-~~~~~~~g~--~i~~~i~d~~g~~~~~~~ 87 (93)
.++|+++|+.|||||||+.+++.+ .|..++.|+.+ ++ ...+.+++. .+.+.+|||+|++++..+
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 89 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ 89 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHH
Confidence 489999999999999999999998 88877888854 44 567888887 899999999999876544
No 96
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.41 E-value=5.6e-13 Score=83.32 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=49.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
..++|+++|+.|||||||+.+++.+.|...+.|+.+.....+..+ .+.+.+||++|+++|..+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~ 83 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG--NVTIKLWDIGGQPRFRSM 83 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEET--TEEEEEEEECCSHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeC--CEEEEEEECCCCHhHHHH
Confidence 458999999999999999999999999887888855322233333 478899999999887654
No 97
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.41 E-value=1.4e-13 Score=94.33 Aligned_cols=56 Identities=9% Similarity=0.016 Sum_probs=42.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQE---ESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~---~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
|++++|++|||||||+.++..+.++.+ +.||.+ ++. .++ ..+++++|||+|||+|.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~---~v~-~~v~LqIWDTAGQErf~ 60 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE---HFS-TLIDLAVMELPGQLNYF 60 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE---EEC-SSSCEEEEECCSCSSSC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE---EEc-cEEEEEEEECCCchhcc
Confidence 789999999999999987776655432 456644 332 233 45899999999999995
No 98
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.39 E-value=2.2e-13 Score=86.72 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=51.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCe----------EEEEEEEecCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGH----------SHLLLIRDEGVPPELQP 86 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~----------~i~~~i~d~~g~~~~~~ 86 (93)
.+||+++|+.|||||||+.+++.+.|...+.++.+ ++ ...+.+++. .+.+.+|||+|+++|..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 48999999999999999999999988777777743 44 456777766 78999999999887643
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.38 E-value=8.8e-13 Score=82.95 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=44.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..++++++|+.|||||||+.+++.+.|.+ +.||.+.....+..++ +.+.+|||+|++++..++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~ 90 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN--ICFTVWDVGGQDKIRPLW 90 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEEEEEEETT--EEEEEEECC-----CTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeEEEEEECC--EEEEEEECCCCHhHHHHH
Confidence 44999999999999999999999888764 4566553344555544 788999999999987653
No 100
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.37 E-value=2.9e-12 Score=79.58 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=46.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
...+++++|++|||||||+.+++...+.....|+ .......+.+++ ..+.+|||+|++++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLT 68 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccc
Confidence 3489999999999999999999886654443444 222345666766 678899999999885
No 101
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=1.1e-13 Score=86.68 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=53.5
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
.+||+++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+||++|++++..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 87 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT 87 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHH
Confidence 38999999999999999999999998887777743 34 56778888889999999999887754
No 102
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.36 E-value=1.2e-12 Score=79.48 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=46.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
+|++++|+.|||||||+.+++.+.|.. +.||.+.....+..+ .+.+.+||++|++++..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~ 59 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYK--NISFTVWDVGGQDKIRP 59 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECS--SCEEEEEECCCCGGGHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEEC--CEEEEEEEcCCChhhHH
Confidence 489999999999999999999988865 567755333444443 47889999999998754
No 103
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.36 E-value=6.6e-13 Score=82.76 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=48.3
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
...+++++|++|||||||+.+++.+.+ ..+.|+.+.....+.+++ +.+.+|||+|+++++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~--~~l~i~Dt~G~~~~~~ 75 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQSQG--FKLNVWDIGGQRKIRP 75 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEETT--EEEEEEECSSCGGGHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEECC--EEEEEEECCCCHHHHH
Confidence 348999999999999999998887755 345677664455677774 6889999999998754
No 104
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.36 E-value=6.2e-13 Score=84.63 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=52.0
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEE-CCeEEEEEEEecCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVI-DGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~-~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
...+||+++|+.|||||||+++++.+.+...+.++.+ .+ ...+.. ++..+.+.+|||+|++++..++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH
Confidence 3458999999999999999999998888877777744 33 333333 3455899999999999987654
No 105
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.36 E-value=3.5e-13 Score=84.87 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=44.6
Q ss_pred CCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeE--EEEEEC-CeEEEEEEEecCCCCCCCCCC
Q psy6968 19 ARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK--KEVVID-GHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 19 ~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~--~~~~~~-g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..+...+|++++|+.|||||||+. ++.+.|........+... ....++ +..+.+++||++|+++|..+.
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 86 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQK-VVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT 86 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHH-HHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT
T ss_pred cccCcceEEEEECCCCCCHHHHHH-HHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh
Confidence 344556999999999999999996 555555543221111111 122343 677899999999999997665
No 106
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.30 E-value=2e-11 Score=75.57 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=44.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
.+++++|++|||||||+++++...+. ..+.++ .+.+...+.+++.. +.+|||+|++++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREA 65 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccc
Confidence 89999999999999999999876542 333333 33346678888854 689999999875
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.27 E-value=6e-12 Score=84.89 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=45.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhC--CCCC-CCCCCcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTG--AFLQ-EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~--~f~~-~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
..|++++|++|||||||+.+++.+ .+.. .+.+|.+.....+.+++ .+.+.+||++|+++|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVF 65 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHH
Confidence 489999999999999999998887 3332 35566543222455555 588999999999987
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.21 E-value=1.5e-12 Score=85.63 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=47.1
Q ss_pred CCeeeEEEECCC---------CCCHHHHHHHHHh---CCCCCCCCCCc-c-ee-EEE--------------EEECCeEEE
Q psy6968 22 VPDLRLGIVGSL---------ASGKSALVHRFMT---GAFLQEESPEG-G-RF-KKE--------------VVIDGHSHL 72 (93)
Q Consensus 22 ~~~~kv~lvG~~---------g~GKtsl~~r~~~---~~f~~~~~~t~-~-~~-~~~--------------~~~~g~~i~ 72 (93)
...+||+++|++ |||||||+.+++. +.|...+.|+. + +| .+. ..+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 445999999999 9999999999998 56766666652 2 22 111 125778899
Q ss_pred EEEEe-----------------------cCCCCCCCCCCCCC
Q psy6968 73 LLIRD-----------------------EGVPPELQPPNPSA 91 (93)
Q Consensus 73 ~~i~d-----------------------~~g~~~~~~~~~~~ 91 (93)
+++|| ++|+++|..+++..
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~ 138 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLM 138 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBC
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhh
Confidence 99999 77888887776654
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=83.04 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=43.2
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
..+||+++|+.|||||||+.+++.+.|...+ ||.+.....+..+ .+.+.+|||+|+++|..++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYK--NISFTVWDVGGQDKIRPLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEEEEEET--TEEEEEEECC-----CCSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEEEEecC--cEEEEEEECCCCHhHHHHH
Confidence 3479999999999999999999988876544 5644222234444 4788999999999998764
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.18 E-value=3.1e-11 Score=86.55 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=43.3
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eE-E------EEEE--CCeEEEEEEEecCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FK-K------EVVI--DGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~-~------~~~~--~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
...+||+++|+++||||||+.+++.+.|...+.|+.+. +. + .+.+ ++..+.+.+||++|+++|..+.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence 34599999999999999999999999988888888543 32 2 1122 3346889999999999998764
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.18 E-value=9.6e-11 Score=70.67 Aligned_cols=59 Identities=22% Similarity=0.150 Sum_probs=41.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
.|++++|+.|||||||+.+++.+.+. ..+.++ ...+...+..++. .+.+|||+|++++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~ 63 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGD 63 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCcc
Confidence 58999999999999999999988753 222222 2233456677775 67899999998753
No 112
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.17 E-value=1.3e-10 Score=76.61 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=46.5
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
...++++++|+.|+|||||+++++...+ ...+.++ ...+...+.+++. .+.+|||+|++++..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~ 100 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYV 100 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccc
Confidence 3569999999999999999999998764 2333333 2223445566664 7889999999887643
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.16 E-value=6e-11 Score=78.37 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=43.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
..+++++|++|||||||++++++..+.....|. .......+..++ ..+.+|||+|++.+..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCC
Confidence 489999999999999999999887654322232 111123344444 6889999999998865
No 114
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.15 E-value=6.2e-11 Score=84.07 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=49.3
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP 89 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~ 89 (93)
..+|++++|+++||||||+.+++.+.+.. +.||.+.-...+.++ .+.+.+|||+|+++|..++.
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~ 384 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTYK--NVKFNVWDVGGQDKIRPLWR 384 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEESS--SCEEEEEEECCCGGGSGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEEEEeC--CEEEEEEECCCcHHHHHHHH
Confidence 45899999999999999999999988765 456754322234444 47889999999999887643
No 115
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.1e-11 Score=75.26 Aligned_cols=61 Identities=16% Similarity=0.044 Sum_probs=40.7
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
...+++++|+.|||||||+.+++.+.+.... ++ +...+..+-..+.+.+|||+|++++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 107 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VS---QEPLSAADYDGSGVTLVDFPGHVKLRYK 107 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCccc-cc---CCCceeeeecCCeEEEEECCCCchHHHH
Confidence 3489999999999999999999988764411 11 1112222224467889999999988654
No 116
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.11 E-value=3.2e-10 Score=74.95 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=45.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ce-eEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GR-FKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
..+++++|++|||||||++++++..+.....|+. .. ....+.+++. .+.+|||+|++.+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTA 65 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCcccccc
Confidence 4899999999999999999998876643333432 22 2455666765 478999999998765
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.11 E-value=1.3e-10 Score=71.86 Aligned_cols=54 Identities=20% Similarity=0.075 Sum_probs=41.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
++++++|+.|||||||+.+++.+.|...+.|+.......+.++ .+.+|||+|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~ 55 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK----NHKIIDMPGFG 55 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET----TEEEEECCCBS
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC----CEEEEECCCcc
Confidence 6899999999999999999999988877666532212233343 67899999943
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.10 E-value=1.3e-10 Score=77.46 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=43.1
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGA-FLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
..+++++|++|||||||++++++.. +..+++.+.-+ .+...++. ...+.+|||+|++++..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~ 64 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSP 64 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCC
Confidence 3799999999999999999998755 33333221111 22344555 56789999999998853
No 119
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.09 E-value=6.3e-11 Score=75.27 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=42.9
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQE---ESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~---~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
...+++++|+.|+|||||+.+++.+.|... +.|+ +..+-..+.+.+|||+|+++++.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~Dt~G~~~~~~ 70 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-------SAADYDGSGVTLVDFPGHVKLRY 70 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCE-------EETTGGGSSCEEEECCCCGGGTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCce-------EEEEeeCceEEEEECCCcHHHHH
Confidence 348999999999999999999999887542 2222 22222446789999999998864
No 120
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.08 E-value=2.4e-10 Score=75.74 Aligned_cols=62 Identities=23% Similarity=0.186 Sum_probs=39.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHh-CCCCCCC-------CCCcc-ee-EEEEEECCeEEEEEEEecCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMT-GAFLQEE-------SPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~-~~f~~~~-------~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
..++++++|.+|+|||||+++++. +.+...+ .++.+ .+ ...+..+|..+.+.+|||+|+..+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 458999999999999999988554 5555555 44432 22 345555677789999999998654
No 121
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.06 E-value=4.2e-10 Score=73.51 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=44.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 19 ~~L~~isl~i~~G---e~~~iiG~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~~~ 69 (235)
T 3tif_A 19 YALKNVNLNIKEG---EFVSIMGPSGSGKSTML-NIIGCL----DKPTEG----EVYIDNIKT 69 (235)
T ss_dssp EEEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred eeEEeeeEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence 4789999999999 99999999999999999 888887 567777 788888654
No 122
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.06 E-value=2.2e-10 Score=75.67 Aligned_cols=64 Identities=20% Similarity=0.075 Sum_probs=43.9
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
...++++++|+.|+|||||+++++...+.. .+.++ .......+..++ ..+.+|||+|++++..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~ 103 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYI 103 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccc
Confidence 346899999999999999999999877532 22222 111122333344 67899999999887543
No 123
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.03 E-value=7.7e-10 Score=71.02 Aligned_cols=59 Identities=10% Similarity=-0.008 Sum_probs=40.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC-C-cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESP-E-GGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-t-~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
...+|+++|+.|||||||+.+++.+.|.....+ + .......+..++ +.+.+|||+|+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLD 88 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcC
Confidence 348999999999999999999998876532212 1 121222333444 6789999999943
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.02 E-value=5e-10 Score=74.41 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=44.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP 87 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~ 87 (93)
.++++++|.+|||||||++++++..+.....|. .......+..++. .+.+|||+|++++..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTI 66 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC-
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccc
Confidence 489999999999999999999887654333333 2223455666664 5678999999998754
No 125
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.01 E-value=6e-10 Score=72.29 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=44.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|.++
T Consensus 17 ~~~l~~vsl~i~~G---e~~~iiG~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 68 (224)
T 2pcj_A 17 YEILKGISLSVKKG---EFVSIIGASGSGKSTLL-YILGLL----DAPTEG----KVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEEETT---CEEEEEECTTSCHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred EeeEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence 45789999999999 99999999999999999 888887 467777 788888654
No 126
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.01 E-value=8.8e-10 Score=73.07 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=44.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 19 ~~vl~~vsl~i~~G---e~~~liG~nGsGKSTLl-k~l~Gl----~~p~~G----~i~~~g~~~ 70 (262)
T 1b0u_A 19 HEVLKGVSLQARAG---DVISIIGSSGSGKSTFL-RCINFL----EKPSEG----AIIVNGQNI 70 (262)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred EEEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEc
Confidence 35789999999999 99999999999999999 888887 467777 788888765
No 127
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.00 E-value=9.1e-10 Score=73.60 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=45.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+++
T Consensus 22 ~~L~~isl~i~~G---e~~~iiGpnGsGKSTLl-~~l~Gl----~~p~~G----~I~~~G~~i 72 (275)
T 3gfo_A 22 HALKGINMNIKRG---EVTAILGGNGVGKSTLF-QNFNGI----LKPSSG----RILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEEETT---SEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred eEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCe----EEEECCEEC
Confidence 4789999999999 99999999999999999 888887 467777 788898765
No 128
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.00 E-value=7.6e-10 Score=73.59 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=45.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|+++
T Consensus 24 ~~vL~~vsl~i~~G---e~~~liG~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~~~ 75 (266)
T 4g1u_C 24 QALINDVSLHIASG---EMVAIIGPNGAGKSTLL-RLLTGY----LSPSHG----ECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEEETT---CEEEEECCTTSCHHHHH-HHHTSS----SCCSSC----EEEETTEET
T ss_pred eeEEEeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence 45789999999999 99999999999999999 888887 567778 788888754
No 129
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.00 E-value=8.1e-10 Score=72.68 Aligned_cols=52 Identities=33% Similarity=0.572 Sum_probs=45.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|.++
T Consensus 22 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~I~i~g~~~ 73 (247)
T 2ff7_A 22 PVILDNINLSIKQG---EVIGIVGRSGSGKSTLT-KLIQRF----YIPENG----QVLIDGHDL 73 (247)
T ss_dssp CEEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEh
Confidence 45789999999999 99999999999999999 888887 567777 788888653
No 130
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.00 E-value=9.1e-10 Score=73.16 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=44.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|+++
T Consensus 37 ~~vL~~vsl~i~~G---ei~~liG~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~i 88 (263)
T 2olj_A 37 LEVLKGINVHIREG---EVVVVIGPSGSGKSTFL-RCLNLL----EDFDEG----EIIIDGINL 88 (263)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEES
T ss_pred EEEEEeeEEEEcCC---CEEEEEcCCCCcHHHHH-HHHHcC----CCCCCc----EEEECCEEC
Confidence 35789999999999 99999999999999999 888887 567777 788888654
No 131
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.99 E-value=8.9e-10 Score=72.21 Aligned_cols=52 Identities=21% Similarity=0.427 Sum_probs=44.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|..+
T Consensus 15 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 66 (243)
T 1mv5_A 15 EQILRDISFEAQPN---SIIAFAGPSGGGKSTIF-SLLERF----YQPTAG----EITIDGQPI 66 (243)
T ss_dssp SCSEEEEEEEECTT---EEEEEECCTTSSHHHHH-HHHTTS----SCCSBS----CEEETTEES
T ss_pred CceEEEeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEh
Confidence 45789999999999 99999999999999999 888887 567777 678888654
No 132
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.99 E-value=1.3e-09 Score=71.89 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=43.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-c-ceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-G-GRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
-+++++|.+|||||||++++++..+.....|. . +.....+.+++. .+.+|||+|+..+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccc
Confidence 37999999999999999998877543332233 2 223456677775 778999999988764
No 133
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.99 E-value=3e-09 Score=68.82 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=41.5
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE----GGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t----~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
...+|+++|++|||||||+++++...+.....+. .......+.+++. .+.+|||+|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~ 90 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFD 90 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccC
Confidence 4589999999999999999999987775544331 2222445667775 568999999543
No 134
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.99 E-value=1e-09 Score=71.85 Aligned_cols=52 Identities=13% Similarity=0.361 Sum_probs=44.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 19 ~~vl~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 70 (240)
T 1ji0_A 19 IHAIKGIDLKVPRG---QIVTLIGANGAGKTTTL-SAIAGL----VRAQKG----KIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred eeEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence 35789999999999 99999999999999999 888887 467777 788888654
No 135
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.99 E-value=8.8e-10 Score=72.80 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=44.7
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 20 ~~vl~~vsl~i~~G---e~~~liG~nGsGKSTLl-k~l~Gl----~~p~~G----~i~~~g~~~ 71 (257)
T 1g6h_A 20 FKALDGVSISVNKG---DVTLIIGPNGSGKSTLI-NVITGF----LKADEG----RVYFENKDI 71 (257)
T ss_dssp EEEEEEECCEEETT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred EeeEeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence 35789999999999 99999999999999999 888887 467777 788888654
No 136
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.98 E-value=8.2e-10 Score=68.70 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=34.5
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGV 80 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g 80 (93)
...+++++|+.|||||||+.+++.+.|...+.++.+ .. .....+++ .+.+|||+|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G 78 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPG 78 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCC
Confidence 348999999999999999999998876665555533 12 22334444 588999999
No 137
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.98 E-value=1.1e-09 Score=72.89 Aligned_cols=52 Identities=29% Similarity=0.459 Sum_probs=45.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|.++
T Consensus 32 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~i 83 (271)
T 2ixe_A 32 VQVLQGLTFTLYPG---KVTALVGPNGSGKSTVA-ALLQNL----YQPTGG----KVLLDGEPL 83 (271)
T ss_dssp SCCEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEG
T ss_pred ceeeEeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCC----EEEECCEEc
Confidence 45789999999999 99999999999999999 888887 567777 788888654
No 138
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.98 E-value=2.3e-09 Score=70.13 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=45.0
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCC-CCCCCCCC---cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGA-FLQEESPE---GGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t---~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
...+|+++|+.|||||||+.+++... |...+.|+ .......+.+++. .+.+|||+|+..+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCC
Confidence 45899999999999999999999866 55555443 2222345566664 57899999987654
No 139
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.97 E-value=1.5e-09 Score=75.07 Aligned_cols=52 Identities=27% Similarity=0.515 Sum_probs=45.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++++|++|||||||+ |.+.+. ..|+.| ++.++|+.+
T Consensus 17 ~~~L~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~iaGl----~~p~~G----~I~i~G~~i 68 (359)
T 3fvq_A 17 TPVLNDISLSLDPG---EILFIIGASGCGKTTLL-RCLAGF----EQPDSG----EISLSGKTI 68 (359)
T ss_dssp EEEEEEEEEEECTT---CEEEEEESTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEE
T ss_pred EEEEEeeEEEEcCC---CEEEEECCCCchHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence 35689999999999 99999999999999999 888887 567778 889999866
No 140
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.96 E-value=1.7e-09 Score=71.83 Aligned_cols=52 Identities=25% Similarity=0.454 Sum_probs=44.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 20 ~~vl~~vsl~i~~G---e~~~liG~nGsGKSTLl-~~i~Gl----~~p~~G----~I~~~g~~~ 71 (266)
T 2yz2_A 20 KKALENVSLVINEG---ECLLVAGNTGSGKSTLL-QIVAGL----IEPTSG----DVLYDGERK 71 (266)
T ss_dssp EEEEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence 35789999999999 99999999999999999 888887 467777 788888654
No 141
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=9.5e-10 Score=75.77 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=32.3
Q ss_pred eeeEEEECCCCCCHHHHHHHHHh-CCCCCCCC--------CCcc-ee-EEEEEECCeEEEEEEEecCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMT-GAFLQEES--------PEGG-RF-KKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~-~~f~~~~~--------~t~~-~~-~~~~~~~g~~i~~~i~d~~g~ 81 (93)
.++++++|++|+|||||+.+++. +.|...+. ++.+ .+ ...+..++..+.+.+|||+|+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence 48999999999999999988544 44544432 2322 12 223445677789999999999
No 142
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.96 E-value=1.5e-09 Score=71.85 Aligned_cols=52 Identities=19% Similarity=0.413 Sum_probs=44.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 28 ~~vl~~vsl~i~~G---ei~~l~G~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~~ 79 (256)
T 1vpl_A 28 KEILKGISFEIEEG---EIFGLIGPNGAGKTTTL-RIISTL----IKPSSG----IVTVFGKNV 79 (256)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred EEEEEeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 888887 467777 788888653
No 143
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.96 E-value=1.1e-09 Score=73.25 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=44.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 34 ~~vL~~isl~i~~G---e~~~liG~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~~ 85 (279)
T 2ihy_A 34 KTILKKISWQIAKG---DKWILYGLNGAGKTTLL-NILNAY----EPATSG----TVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEEETT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTBCC
T ss_pred EEEEEeeeEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCe----EEEECCEEc
Confidence 35789999999999 99999999999999999 888887 467777 788888654
No 144
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.96 E-value=8.8e-10 Score=74.72 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=45.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|.++
T Consensus 67 ~~vL~~isl~i~~G---e~vaivG~sGsGKSTLl-~ll~gl----~~p~~G----~I~i~G~~i 118 (306)
T 3nh6_A 67 RETLQDVSFTVMPG---QTLALVGPSGAGKSTIL-RLLFRF----YDISSG----CIRIDGQDI 118 (306)
T ss_dssp CEEEEEEEEEECTT---CEEEEESSSCHHHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred CceeeeeeEEEcCC---CEEEEECCCCchHHHHH-HHHHcC----CCCCCc----EEEECCEEc
Confidence 45789999999999 99999999999999999 888887 678888 788888754
No 145
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.95 E-value=1.5e-09 Score=70.23 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=44.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 23 ~il~~vsl~i~~G---e~~~iiG~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~~ 73 (214)
T 1sgw_A 23 PVLERITMTIEKG---NVVNFHGPNGIGKTTLL-KTISTY----LKPLKG----EIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEEETT---CCEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEG
T ss_pred eEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEEh
Confidence 5789999999999 99999999999999999 888887 467777 788888654
No 146
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.95 E-value=5.5e-10 Score=70.42 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=37.3
Q ss_pred eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-e-EEEEEECCeEEEEEEEecCCCCC
Q psy6968 16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-F-KKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~-~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
+.+.++ .+++++|++|||||||++++++..|...+.|+.+. + ...+.+++ .+.+||++|+..
T Consensus 21 ~~~~~~---~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~ 84 (210)
T 1pui_A 21 LPSDTG---IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGY 84 (210)
T ss_dssp SSCSCS---EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC-
T ss_pred CCCCCC---cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcc
Confidence 566667 89999999999999999777766544444565442 1 23334443 467999999753
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.94 E-value=2.3e-09 Score=75.28 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=38.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
+|++||.++||||||++|++.+.+. ..++.+ .+.....+.+++.. +.+|||+|++..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~ 62 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDN 62 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCcccc
Confidence 7999999999999999999987632 222222 23335677888864 578999998864
No 148
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.94 E-value=2.2e-09 Score=74.39 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=45.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++++.+| ..++++|++|||||||+ |.+.+. ..|+.| ++.++|+++
T Consensus 42 ~aL~~vsl~i~~G---ei~~IiGpnGaGKSTLl-r~i~GL----~~p~~G----~I~i~G~~i 92 (366)
T 3tui_C 42 QALNNVSLHVPAG---QIYGVIGASGAGKSTLI-RCVNLL----ERPTEG----SVLVDGQEL 92 (366)
T ss_dssp EEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred EEEEeeEEEEcCC---CEEEEEcCCCchHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence 4689999999999 99999999999999999 888887 567878 788888764
No 149
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.93 E-value=2.3e-09 Score=74.64 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=45.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| ..++++|++|||||||+ |.+.+. ..|+.| ++.++|+.+
T Consensus 16 ~~~L~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~iaGl----~~p~~G----~I~i~G~~~ 67 (381)
T 3rlf_A 16 VVVSKDINLDIHEG---EFVVFVGPSGCGKSTLL-RMIAGL----ETITSG----DLFIGEKRM 67 (381)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred EEEEeeeEEEECCC---CEEEEEcCCCchHHHHH-HHHHcC----CCCCCe----EEEECCEEC
Confidence 34689999999999 99999999999999999 888887 567778 788888765
No 150
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.92 E-value=3.1e-09 Score=73.53 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=45.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 16 ~~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i 67 (362)
T 2it1_A 16 FTALNNINLKIKDG---EFMALLGPSGSGKSTLL-YTIAGI----YKPTSG----KIYFDEKDV 67 (362)
T ss_dssp SEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred EEEEEeeEEEECCC---CEEEEECCCCchHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence 34789999999999 99999999999999999 888887 467777 788888754
No 151
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.91 E-value=3.6e-09 Score=73.40 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=45.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|||||||+ |.+.+. ..|+.| ++.++|+.+
T Consensus 17 ~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~~ 67 (372)
T 1g29_1 17 TAVREMSLEVKDG---EFMILLGPSGCGKTTTL-RMIAGL----EEPSRG----QIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEE
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCcHHHHHH-HHHHcC----CCCCcc----EEEECCEEC
Confidence 4689999999999 99999999999999999 888887 467777 788898766
No 152
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.91 E-value=2.9e-09 Score=73.57 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=44.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 17 ~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i 67 (359)
T 2yyz_A 17 KAVDGVSFEVKDG---EFVALLGPSGCGKTTTL-LMLAGI----YKPTSG----EIYFDDVLV 67 (359)
T ss_dssp EEEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred EEEeeeEEEEcCC---CEEEEEcCCCchHHHHH-HHHHCC----CCCCcc----EEEECCEEC
Confidence 4689999999999 99999999999999999 888887 467777 788888754
No 153
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.90 E-value=3.4e-09 Score=68.93 Aligned_cols=50 Identities=24% Similarity=0.499 Sum_probs=43.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|.
T Consensus 21 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~ 70 (229)
T 2pze_A 21 TPVLKDINFKIERG---QLLAVAGSTGAGKTSLL-MMIMGE----LEPSEG----KIKHSGR 70 (229)
T ss_dssp CCSEEEEEEEEETT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEECSC
T ss_pred ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CcCCcc----EEEECCE
Confidence 45789999999999 99999999999999999 888887 567777 7788873
No 154
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.90 E-value=3e-09 Score=73.41 Aligned_cols=52 Identities=29% Similarity=0.546 Sum_probs=45.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 28 ~~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i 79 (355)
T 1z47_A 28 ARSVRGVSFQIREG---EMVGLLGPSGSGKTTIL-RLIAGL----ERPTKG----DVWIGGKRV 79 (355)
T ss_dssp TTCEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred CEEEeeeEEEECCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCcc----EEEECCEEC
Confidence 35789999999999 99999999999999999 888887 467777 788888754
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.90 E-value=2.4e-09 Score=75.23 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=39.5
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
..+++++|++|||||||++++++..+ ...+..+ .+.....+.++|. .+.+|||+|+.++..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSR 243 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccc
Confidence 38999999999999999988887654 2222222 2222446788887 457899999866543
No 156
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.90 E-value=4.5e-09 Score=70.83 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=40.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-C-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQ-EESP-E-GGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~-t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
..+++++|.+|||||||+++++...+.. ...| + .......+..+ ..++.+|||+|+.+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccch
Confidence 3689999999999999999999887642 1222 2 22122223333 467889999998874
No 157
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.90 E-value=2.4e-09 Score=70.00 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=43.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|.
T Consensus 18 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~ 67 (237)
T 2cbz_A 18 PPTLNGITFSIPEG---ALVAVVGQVGCGKSSLL-SALLAE----MDKVEG----HVAIKGS 67 (237)
T ss_dssp CCSEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTC----SEEEEE----EEEECSC
T ss_pred CceeeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCE
Confidence 45789999999999 99999999999999999 888887 456667 7788873
No 158
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.89 E-value=4.1e-09 Score=73.15 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=44.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 25 ~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i 75 (372)
T 1v43_A 25 TAVNKLNLTIKDG---EFLVLLGPSGCGKTTTL-RMIAGL----EEPTEG----RIYFGDRDV 75 (372)
T ss_dssp EEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred EEEeeeEEEECCC---CEEEEECCCCChHHHHH-HHHHcC----CCCCce----EEEECCEEC
Confidence 4689999999999 99999999999999999 888887 567777 788888654
No 159
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.88 E-value=2.9e-09 Score=73.37 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=44.6
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 20 vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i 69 (353)
T 1oxx_K 20 ALDNVNINIENG---ERFGILGPSGAGKTTFM-RIIAGL----DVPSTG----ELYFDDRLV 69 (353)
T ss_dssp EEEEEEEEECTT---CEEEEECSCHHHHHHHH-HHHHTS----SCCSEE----EEEETTEEE
T ss_pred eEeceEEEECCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 789999999999 99999999999999999 888887 467777 788888765
No 160
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.88 E-value=3.1e-09 Score=70.04 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=43.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+ | ++.++|..+
T Consensus 14 ~vl~~vsl~i~~G---e~~~liG~NGsGKSTLl-k~l~Gl----~~p~-G----~i~~~g~~~ 63 (249)
T 2qi9_C 14 TRLGPLSGEVRAG---EILHLVGPNGAGKSTLL-ARMAGM----TSGK-G----SIQFAGQPL 63 (249)
T ss_dssp TTEEEEEEEEETT---CEEEEECCTTSSHHHHH-HHHTTS----SCCE-E----EEEETTEEG
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCC-e----EEEECCEEC
Confidence 5689999999999 99999999999999999 888887 4577 7 788888653
No 161
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.87 E-value=1.7e-09 Score=72.83 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=30.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC-CCCCCCC--------CCcc-ee-EEEEEECCeEEEEEEEecCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG-AFLQEES--------PEGG-RF-KKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~-~f~~~~~--------~t~~-~~-~~~~~~~g~~i~~~i~d~~g~ 81 (93)
++++++|++|||||||+.++... .++..+. ++.. .+ ...+..++..+.+.+||++|+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 78899999999999999776653 5554431 1211 11 112233455678999999998
No 162
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.87 E-value=1.7e-08 Score=66.02 Aligned_cols=59 Identities=17% Similarity=0.037 Sum_probs=39.1
Q ss_pred CCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCC---CcceeEEEEEECCeEEEEEEEecCCC
Q psy6968 21 DVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESP---EGGRFKKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~---t~~~~~~~~~~~g~~i~~~i~d~~g~ 81 (93)
....++|+++|.+|||||||+++++...+... +.+ |.......+..++. .+.+|||+|.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~liDTPG~ 80 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC--HVEVVDTPDI 80 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTE--EEEEEECCSC
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCc--EEEEEECCCC
Confidence 34569999999999999999999988665332 222 11112334556664 5679999997
No 163
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.86 E-value=3.6e-09 Score=72.88 Aligned_cols=50 Identities=18% Similarity=0.455 Sum_probs=44.5
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+++++++++.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.++|+.+
T Consensus 15 ~l~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~~~g~~i 64 (348)
T 3d31_A 15 SLDNLSLKVESG---EYFVILGPTGAGKTLFL-ELIAGF----HVPDSG----RILLDGKDV 64 (348)
T ss_dssp EEEEEEEEECTT---CEEEEECCCTHHHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred EEeeeEEEEcCC---CEEEEECCCCccHHHHH-HHHHcC----CCCCCc----EEEECCEEC
Confidence 789999999999 99999999999999999 888887 567777 788888754
No 164
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.85 E-value=2.4e-09 Score=76.27 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=31.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC--CCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA--FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~ 86 (93)
++|+++|++|||||||+++++... +...+..+ .+.+...+.++| +.+.+|||+|++++..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGE 296 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchh
Confidence 899999999999999999988764 23333333 233345677777 4688999999987653
No 165
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.84 E-value=7e-09 Score=68.65 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=42.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.| .| ++.++|..+
T Consensus 34 ~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~-~G----~I~i~g~~i 83 (260)
T 2ghi_A 34 RTLKSINFFIPSG---TTCALVGHTGSGKSTIA-KLLYRF----YDA-EG----DIKIGGKNV 83 (260)
T ss_dssp CSEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCC-EE----EEEETTEEG
T ss_pred ceeEeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhcc----CCC-Ce----EEEECCEEh
Confidence 4789999999999 99999999999999999 888886 334 56 788888654
No 166
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.82 E-value=8e-09 Score=68.61 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=43.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+. | ..++++|++|+|||||+ +.+.+. . |+.| ++.++|..+
T Consensus 18 ~~il~~vsl~i~-G---e~~~i~G~NGsGKSTLl-k~l~Gl----~-p~~G----~I~~~g~~~ 67 (263)
T 2pjz_A 18 RFSLENINLEVN-G---EKVIILGPNGSGKTTLL-RAISGL----L-PYSG----NIFINGMEV 67 (263)
T ss_dssp EEEEEEEEEEEC-S---SEEEEECCTTSSHHHHH-HHHTTS----S-CCEE----EEEETTEEG
T ss_pred ceeEEeeeEEEC-C---EEEEEECCCCCCHHHHH-HHHhCC----C-CCCc----EEEECCEEC
Confidence 357899999999 9 99999999999999999 888887 5 7777 788888654
No 167
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=8.7e-09 Score=71.33 Aligned_cols=60 Identities=17% Similarity=0.054 Sum_probs=39.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-CcceeEEEEEECCe---------------EEEEEEEecCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESP-EGGRFKKEVVIDGH---------------SHLLLIRDEGVPPEL 84 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~-t~~~~~~~~~~~g~---------------~i~~~i~d~~g~~~~ 84 (93)
.++++||.++||||||+++++...+.. .|+. |.+.....+.+++. ...+++|||+|+.++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 789999999999999999988865422 2221 21111114555553 257899999999876
No 168
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.81 E-value=7.3e-09 Score=68.12 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=43.9
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| ..++++|++|+|||||+ +.+.+.. .+.|+.| ++.++|..+
T Consensus 16 ~~vl~~vsl~i~~G---e~~~l~G~nGsGKSTLl-k~l~Gl~--~~~p~~G----~I~~~g~~~ 69 (250)
T 2d2e_A 16 ETILKGVNLVVPKG---EVHALMGPNGAGKSTLG-KILAGDP--EYTVERG----EILLDGENI 69 (250)
T ss_dssp EEEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHHTCT--TCEEEEE----EEEETTEEC
T ss_pred EEEEeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCCC--CCCCCce----EEEECCEEC
Confidence 35789999999999 99999999999999999 7777751 1345666 788888754
No 169
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.80 E-value=2e-08 Score=62.08 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=37.2
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGV 80 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g 80 (93)
...+++++|+.|||||||+++++.+.+.. +.++.+ .+ ......+. .+.+|||+|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G 77 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPG 77 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCC
Confidence 44799999999999999999999887432 334422 12 12222333 467999999
No 170
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.80 E-value=2.4e-09 Score=75.12 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=40.3
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
..+++++|+++||||||+++++...+. ..+..+ .+.+...+.+++.. +.+|||+|+.+
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~ 235 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRK 235 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCc
Confidence 489999999999999999999987653 233333 23334566778764 78999999844
No 171
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.79 E-value=8.3e-09 Score=68.54 Aligned_cols=54 Identities=22% Similarity=0.264 Sum_probs=43.5
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+... +.|+.| ++.++|..+
T Consensus 33 ~~vl~~vsl~i~~G---e~~~l~G~NGsGKSTLl-k~l~Gl~~--~~p~~G----~I~~~g~~i 86 (267)
T 2zu0_C 33 KAILRGLSLDVHPG---EVHAIMGPNGSGKSTLS-ATLAGRED--YEVTGG----TVEFKGKDL 86 (267)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTCTT--CEEEEE----EEEETTEEG
T ss_pred EEEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCCCC--CCCCCe----EEEECCEEC
Confidence 35789999999999 99999999999999999 77777521 245566 788888653
No 172
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.79 E-value=9.5e-09 Score=74.48 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=45.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 356 ~~~l~~i~l~i~~G---~~~~ivG~sGsGKSTll-~~l~g~----~~p~~G----~i~~~g~~~ 407 (582)
T 3b5x_A 356 KPALSHVSFSIPQG---KTVALVGRSGSGKSTIA-NLFTRF----YDVDSG----SICLDGHDV 407 (582)
T ss_pred ccccccceEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCC----EEEECCEEh
Confidence 35789999999999 99999999999999999 888887 678888 788888654
No 173
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.79 E-value=8.8e-09 Score=74.65 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=45.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
+.+++++++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 356 ~~~l~~v~~~i~~G---~~~~ivG~sGsGKSTLl-~~l~g~----~~p~~G----~i~~~g~~~ 407 (582)
T 3b60_A 356 VPALRNINLKIPAG---KTVALVGRSGSGKSTIA-SLITRF----YDIDEG----HILMDGHDL 407 (582)
T ss_dssp CCSEEEEEEEECTT---CEEEEEECTTSSHHHHH-HHHTTT----TCCSEE----EEEETTEET
T ss_pred CccccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhhc----cCCCCC----eEEECCEEc
Confidence 45789999999999 99999999999999999 888887 678878 788888654
No 174
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.77 E-value=3.3e-08 Score=66.64 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=42.5
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCC--CCCC-cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQE--ESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~--~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
..-+|+++|.+|||||||++++++..+... ...+ ..........+ ...++.+|||+|+.++.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccc
Confidence 346999999999999999999998876431 1112 22222233443 14678899999998764
No 175
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.77 E-value=8e-09 Score=75.03 Aligned_cols=51 Identities=22% Similarity=0.441 Sum_probs=45.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.++|.++
T Consensus 358 ~vl~~isl~i~~G---~~~~ivG~sGsGKSTLl-~~l~g~----~~p~~G----~i~~~g~~i 408 (595)
T 2yl4_A 358 PIFQDFSLSIPSG---SVTALVGPSGSGKSTVL-SLLLRL----YDPASG----TISLDGHDI 408 (595)
T ss_dssp EEEEEEEEEECTT---CEEEEECCTTSSSTHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred ccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCc----EEEECCEEh
Confidence 4789999999999 99999999999999999 888887 678888 788888654
No 176
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.77 E-value=8.8e-09 Score=69.29 Aligned_cols=50 Identities=24% Similarity=0.499 Sum_probs=42.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. +.|+.| ++.++|.
T Consensus 51 ~~vl~~isl~i~~G---e~~~i~G~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~ 100 (290)
T 2bbs_A 51 TPVLKDINFKIERG---QLLAVAGSTGAGKTSLL-MMIMGE----LEPSEG----KIKHSGR 100 (290)
T ss_dssp CCSEEEEEEEECTT---CEEEEEESTTSSHHHHH-HHHTTS----SCEEEE----EEECCSC
T ss_pred ceEEEeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCc----EEEECCE
Confidence 45789999999999 99999999999999999 888887 456667 7778773
No 177
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.76 E-value=8.4e-09 Score=74.73 Aligned_cols=52 Identities=21% Similarity=0.447 Sum_probs=45.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.++|.++
T Consensus 354 ~~~l~~isl~i~~G---~~~~ivG~sGsGKSTll-~~l~g~----~~p~~G----~i~~~g~~~ 405 (578)
T 4a82_A 354 APILKDINLSIEKG---ETVAFVGMSGGGKSTLI-NLIPRF----YDVTSG----QILIDGHNI 405 (578)
T ss_dssp CCSEEEEEEEECTT---CEEEEECSTTSSHHHHH-TTTTTS----SCCSEE----EEEETTEEG
T ss_pred CcceeeeEEEECCC---CEEEEECCCCChHHHHH-HHHhcC----CCCCCc----EEEECCEEh
Confidence 35789999999999 99999999999999999 777776 678888 788998754
No 178
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.76 E-value=8.1e-09 Score=65.53 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=38.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--eeEEEEEEC-CeEEEEEEEecCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVID-GHSHLLLIRDEGVPP 82 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~--~~~~~~~~~-g~~i~~~i~d~~g~~ 82 (93)
...+|+++|+.|||||||+++++.+.+.....++.+ .......+. .....+.+|||+|..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 90 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYG 90 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCC
Confidence 348999999999999999999988763221222111 111123333 334678899999954
No 179
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.72 E-value=6.3e-09 Score=73.24 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=43.4
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~ 88 (93)
....+++++|+.++|||||+.+++...+.. .+..+ .......+.+++.. .+.+|||+|+++|..+.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~ 100 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELG 100 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchh
Confidence 345899999999999999998888776532 22222 22234456666542 78899999999987654
No 180
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.72 E-value=5.3e-09 Score=73.76 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=38.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCC--CCCCCCCC-cceeEEEEEECCeEEEEEEEecCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGA--FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGV 80 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g 80 (93)
...+++++|++++|||||+++++... +...+.++ .+.+...+.+++. .+.+|||+|
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G 252 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAG 252 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGG
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCC
Confidence 34899999999999999999998654 22233333 2223446677776 678999999
No 181
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.72 E-value=1.2e-08 Score=74.26 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=45.4
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 368 ~~~l~~isl~i~~G---~~~~ivG~sGsGKSTll-~~l~g~----~~p~~G----~i~~~g~~i 419 (598)
T 3qf4_B 368 KPVLKDITFHIKPG---QKVALVGPTGSGKTTIV-NLLMRF----YDVDRG----QILVDGIDI 419 (598)
T ss_dssp SCSCCSEEEECCTT---CEEEEECCTTSSTTHHH-HHHTTS----SCCSEE----EEEETTEEG
T ss_pred CccccceEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----cCCCCe----EEEECCEEh
Confidence 34789999999999 99999999999999999 888887 678888 788998754
No 182
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.71 E-value=1e-08 Score=73.21 Aligned_cols=59 Identities=31% Similarity=0.420 Sum_probs=45.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC--CCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCC-CCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA--FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP-ELQ 85 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~-~~~ 85 (93)
++|+++|.++||||||+++++... +...+..+ .+.....+.++|. .+.+|||+|+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETN 306 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccch
Confidence 799999999999999999998864 34445444 3333556778875 57899999998 664
No 183
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.70 E-value=1.3e-08 Score=73.92 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=45.1
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
...++++++++.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 356 ~~~l~~isl~i~~G---e~~~ivG~sGsGKSTll-~~l~g~----~~~~~G----~i~i~g~~i 407 (587)
T 3qf4_A 356 DPVLSGVNFSVKPG---SLVAVLGETGSGKSTLM-NLIPRL----IDPERG----RVEVDELDV 407 (587)
T ss_dssp CCSEEEEEEEECTT---CEEEEECSSSSSHHHHH-HTTTTS----SCCSEE----EEEESSSBG
T ss_pred CcceeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----ccCCCc----EEEECCEEc
Confidence 45789999999999 99999999999999999 888877 678878 788888653
No 184
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.68 E-value=1.6e-08 Score=70.53 Aligned_cols=50 Identities=30% Similarity=0.555 Sum_probs=42.0
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~ 70 (93)
...++++++++.+| ..++++|++|||||||+ +.+.+.. . +.| ++.++|+.
T Consensus 34 ~~~L~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~iaGl~----~-~~G----~I~i~G~~ 83 (390)
T 3gd7_A 34 NAILENISFSISPG---QRVGLLGRTGSGKSTLL-SAFLRLL----N-TEG----EIQIDGVS 83 (390)
T ss_dssp CCSEEEEEEEECTT---CEEEEEESTTSSHHHHH-HHHHTCS----E-EEE----EEEESSCB
T ss_pred eEEeeceeEEEcCC---CEEEEECCCCChHHHHH-HHHhCCC----C-CCe----EEEECCEE
Confidence 45789999999999 99999999999999999 8888862 2 456 77888754
No 185
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.68 E-value=2e-08 Score=78.57 Aligned_cols=51 Identities=27% Similarity=0.473 Sum_probs=46.3
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| .++++||++|+|||||+ +.+.+. |+|+.| .+.+||.++
T Consensus 1093 ~VL~~isl~I~~G---e~vaIVG~SGsGKSTL~-~lL~rl----~~p~~G----~I~iDG~di 1143 (1321)
T 4f4c_A 1093 EILKGLSFSVEPG---QTLALVGPSGCGKSTVV-ALLERF----YDTLGG----EIFIDGSEI 1143 (1321)
T ss_dssp CSEEEEEEEECTT---CEEEEECSTTSSTTSHH-HHHTTS----SCCSSS----EEEETTEET
T ss_pred ccccceeEEECCC---CEEEEECCCCChHHHHH-HHHhcC----ccCCCC----EEEECCEEh
Confidence 5799999999999 99999999999999999 888887 789888 899999765
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=3.1e-08 Score=69.64 Aligned_cols=61 Identities=21% Similarity=0.182 Sum_probs=33.3
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCC-C-------CCCcc-ee-EEEEEECCeEEEEEEEecCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQE-E-------SPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~-------~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
.++++++|++|||||||++.+++..+... + .++.. .+ ...+..++....+.+||++|++++
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 36889999999999999988877665321 1 11111 11 111122344568999999998765
No 187
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.67 E-value=5.7e-08 Score=63.65 Aligned_cols=49 Identities=27% Similarity=0.524 Sum_probs=40.2
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.++++++++.+ ..++++|++|+|||||+ +.+.+. ..|+.| ++.++|..+
T Consensus 14 ~l~~isl~i~~----e~~~liG~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~ 62 (240)
T 2onk_A 14 FRLNVDFEMGR----DYCVLLGPTGAGKSVFL-ELIAGI----VKPDRG----EVRLNGADI 62 (240)
T ss_dssp EEEEEEEEECS----SEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred EEeeeEEEECC----EEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence 48888888854 47899999999999999 888887 467777 788888754
No 188
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.65 E-value=5.2e-08 Score=64.26 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=37.8
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
..+++++++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.|
T Consensus 18 ~~vl~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G 60 (253)
T 2nq2_C 18 NFLFQQLNFDLNKG---DILAVLGQNGCGKSTLL-DLLLGI----HRPIQG 60 (253)
T ss_dssp TEEEEEEEEEEETT---CEEEEECCSSSSHHHHH-HHHTTS----SCCSEE
T ss_pred CeEEEEEEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc
Confidence 45789999999999 99999999999999999 888887 456766
No 189
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.65 E-value=7.2e-08 Score=66.58 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=37.3
Q ss_pred ee-EEEECCCCCCHHHHHHHHHhCCCCCC--CCCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968 25 LR-LGIVGSLASGKSALVHRFMTGAFLQE--ESPEGGRFKKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 25 ~k-v~lvG~~g~GKtsl~~r~~~~~f~~~--~~~t~~~~~~~~~~~g~~i~~~i~d~~g~ 81 (93)
++ ++++|++|||||||+++++...+... ..+|.+.....+.++|. .+.+|||+|+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~ 236 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGF 236 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCB
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCc
Confidence 56 89999999999999988887665321 12223333557888884 5689999996
No 190
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.63 E-value=1.2e-08 Score=72.52 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=36.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF--LQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
++++++|++|||||||+++++...+ ...+..+. +.....+.++|. .+.+|||+|+.++.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~ 286 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETS 286 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccch
Confidence 7999999999999999999987543 33343332 222346677885 45899999986653
No 191
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.62 E-value=5.3e-08 Score=66.71 Aligned_cols=59 Identities=17% Similarity=-0.056 Sum_probs=39.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-CcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQE-ESP-EGGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~-t~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
..+++++|++|||||||+.+++...+... +.. +.+.....+..++ ..+.+|||+|+.++
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDR 227 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCcccc
Confidence 37999999999999999988887664322 111 2222222333343 57899999998764
No 192
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.59 E-value=6.5e-08 Score=67.67 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=34.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEECCe---------------EEEEEEEecCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP--EGGRFKKEVVIDGH---------------SHLLLIRDEGVPPELQP 86 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~--t~~~~~~~~~~~g~---------------~i~~~i~d~~g~~~~~~ 86 (93)
.++++||.+|||||||++++....+.....| |.......+.+++. ...+.+||++|+.++..
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 8999999999999999988876644222112 11112235555543 23589999999887543
No 193
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.59 E-value=1.3e-08 Score=71.46 Aligned_cols=55 Identities=18% Similarity=0.096 Sum_probs=32.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE----GGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t----~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
.+|++||+++||||||+++++...+.. ..++ .+.....+.+++ ..+.+|||+|++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~ 62 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGID 62 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCS--SCCEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECC--ceEEEEECCCCC
Confidence 689999999999999999998866532 1122 222223333444 468899999986
No 194
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.59 E-value=7.4e-08 Score=75.21 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=45.5
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
.+++++++++.+| .++++||++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 404 ~vL~~isl~i~~G---~~~~ivG~sGsGKSTl~-~ll~g~----~~~~~G----~i~i~g~~i 454 (1284)
T 3g5u_A 404 QILKGLNLKVKSG---QTVALVGNSGCGKSTTV-QLMQRL----YDPLDG----MVSIDGQDI 454 (1284)
T ss_dssp CSEEEEEEEECTT---CEEEEECCSSSSHHHHH-HHTTTS----SCCSEE----EEEETTEEG
T ss_pred cceecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEH
Confidence 5789999999999 99999999999999999 888887 678888 889998754
No 195
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.58 E-value=3.6e-09 Score=76.43 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=44.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEE-CCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVI-DGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~-~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
.+++++|..++|||||+.++....+...+.++. ..+ ...+.+ ++. .+.+|||+|+++|..++..
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~ 71 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRAR 71 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHH
Confidence 789999999999999999998766554444431 111 112233 233 6789999999999887653
No 196
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.58 E-value=9.4e-08 Score=74.80 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=46.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..+++++++.+++| .++++||++|+|||||+ +.+.+. |+|+.| ++.+||.++
T Consensus 431 ~~vL~~isl~i~~G---~~vaivG~sGsGKSTll-~ll~~~----~~~~~G----~I~idG~~i 482 (1321)
T 4f4c_A 431 VPILRGMNLRVNAG---QTVALVGSSGCGKSTII-SLLLRY----YDVLKG----KITIDGVDV 482 (1321)
T ss_dssp SCSEEEEEEEECTT---CEEEEEECSSSCHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred CceeeceEEeecCC---cEEEEEecCCCcHHHHH-HHhccc----cccccC----cccCCCccc
Confidence 45789999999999 99999999999999999 888887 788888 889998654
No 197
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.57 E-value=1.2e-07 Score=66.77 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
+...+++++|..++|||||+.+++.
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHH
Confidence 4458999999999999999999854
No 198
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.57 E-value=2.8e-08 Score=70.59 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=22.9
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
+..++++++|..++|||||+.+++..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 44589999999999999999998754
No 199
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.54 E-value=3.8e-07 Score=61.25 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=38.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-C-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESP-E-GGRFKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~-t-~~~~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
.+++++|++|||||||+++++...+.. ...| + .......+..++ .++.+|||+|++
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCC
Confidence 689999999999999999998876531 1112 2 221222333343 577899999987
No 200
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.54 E-value=4.6e-07 Score=62.99 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=22.9
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
...++++++|..++|||||+.+++...
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 345899999999999999998887643
No 201
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.49 E-value=3e-08 Score=69.89 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=35.5
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
..+|+++|++|||||||+++++...+.. ..++.+ .. .....+......+.+|||+|..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~ 82 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 82 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC--
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCC
Confidence 3699999999999999999998866431 111111 11 1122333334578999999943
No 202
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.47 E-value=9.9e-08 Score=74.51 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=44.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i 71 (93)
..++++++.+.+| .+++++|++|+|||||+ +.+.+. ++|+.| ++.+||.++
T Consensus 1047 ~~l~~vsl~i~~G---e~v~ivG~sGsGKSTl~-~~l~g~----~~p~~G----~I~i~g~~i 1097 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKG---QTLALVGSSGCGKSTVV-QLLERF----YDPMAG----SVFLDGKEI 1097 (1284)
T ss_dssp CSBSSCCEEECSS---SEEEEECSSSTTHHHHH-HHHTTS----SCCSEE----EEESSSSCT
T ss_pred eeecceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----EEEECCEEc
Confidence 4789999999999 99999999999999999 888887 678888 788888653
No 203
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.46 E-value=4.9e-07 Score=63.08 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
++++++|.++||||||+++++...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 479999999999999998888765
No 204
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.45 E-value=1.7e-08 Score=62.44 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=29.9
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
.++++++.+.++ ..++++|++|+|||||+ +.+.+..
T Consensus 22 ~l~~vsl~i~~G---e~v~L~G~nGaGKTTLl-r~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHTEKA---IMVYLNGDLGAGKTTLT-RGMLQGI 57 (158)
T ss_dssp HHHHHHHCCSSC---EEEEEECSTTSSHHHHH-HHHHHHT
T ss_pred HHhccccccCCC---CEEEEECCCCCCHHHHH-HHHHHhC
Confidence 356778888999 89999999999999999 6665543
No 205
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.44 E-value=2.6e-07 Score=61.12 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=24.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFL 50 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~ 50 (93)
..+|+++|+.+||||||++++++..|.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 379999999999999999999988774
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.42 E-value=3.3e-07 Score=63.50 Aligned_cols=61 Identities=18% Similarity=0.076 Sum_probs=38.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC-CCCCCC-CcceeEEEEEECC-------------------eEEEEEEEecCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF-LQEESP-EGGRFKKEVVIDG-------------------HSHLLLIRDEGVPPE 83 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f-~~~~~~-t~~~~~~~~~~~g-------------------~~i~~~i~d~~g~~~ 83 (93)
.++++||.+|||||||+++++.... ..+++. |.......+.+.+ ....+++|||+|+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999988876431 122221 1111111233332 235789999999987
Q ss_pred CC
Q psy6968 84 LQ 85 (93)
Q Consensus 84 ~~ 85 (93)
+.
T Consensus 82 ~a 83 (368)
T 2dby_A 82 GA 83 (368)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 207
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.42 E-value=3.2e-07 Score=67.12 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=23.5
Q ss_pred CCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 21 DVPDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
....++++++|..++|||||+.+++..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHh
Confidence 344589999999999999999999865
No 208
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.40 E-value=1.4e-07 Score=68.91 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=42.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCcceeEEEEEEC-----------C-----eEEEEEEEecCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEE----SPEGGRFKKEVVID-----------G-----HSHLLLIRDEGVPPEL 84 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~----~~t~~~~~~~~~~~-----------g-----~~i~~~i~d~~g~~~~ 84 (93)
.+++++|..++|||||+.+++...+.... .++.+.+ .+..+ + ....+.+|||+|+++|
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~--~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGAT--EIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEE--EEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeE--EEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 79999999999999999998876543321 1222221 11110 0 1125899999999999
Q ss_pred CCCCCC
Q psy6968 85 QPPNPS 90 (93)
Q Consensus 85 ~~~~~~ 90 (93)
..++..
T Consensus 84 ~~~~~r 89 (594)
T 1g7s_A 84 TTLRKR 89 (594)
T ss_dssp TTSBCS
T ss_pred HHHHHH
Confidence 887653
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.40 E-value=7.2e-07 Score=60.95 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.6
Q ss_pred CeeeEEEECCCCCCHHHHHHH
Q psy6968 23 PDLRLGIVGSLASGKSALVHR 43 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r 43 (93)
.+.|++++|..++||||++.+
T Consensus 6 ~~~klLlLG~geSGKSTi~KQ 26 (327)
T 3ohm_A 6 RELKLLLLGTGESGKSTFIKQ 26 (327)
T ss_dssp CEEEEEEECSTTSSHHHHHHH
T ss_pred ccceEEEEcCCCccHHHHHHH
Confidence 458999999999999999864
No 210
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.40 E-value=5.1e-07 Score=62.85 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=38.7
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHh---CCCCCCCCC--Ccc-ee-EEEEEE-------------C--Ce----EEEEEEE
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMT---GAFLQEESP--EGG-RF-KKEVVI-------------D--GH----SHLLLIR 76 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~---~~f~~~~~~--t~~-~~-~~~~~~-------------~--g~----~i~~~i~ 76 (93)
...+++++|..++|||||+.++.. +.+.++..+ |.+ .| ...+.. + +. ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 458999999999999999988773 344444444 422 23 222211 1 21 3689999
Q ss_pred ecCCCCCCC
Q psy6968 77 DEGVPPELQ 85 (93)
Q Consensus 77 d~~g~~~~~ 85 (93)
||+|+++|.
T Consensus 87 DtPGh~~f~ 95 (408)
T 1s0u_A 87 DSPGHETLM 95 (408)
T ss_dssp ECSSHHHHH
T ss_pred ECCCHHHHH
Confidence 999998763
No 211
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.39 E-value=4e-07 Score=64.43 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.3
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
...+++++|..++|||||+.+++..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999863
No 212
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.39 E-value=4e-07 Score=62.31 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFL 50 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~ 50 (93)
-+|++||+.|||||||++++++..|.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcC
Confidence 39999999999999999999887763
No 213
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.39 E-value=2.6e-07 Score=68.09 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=39.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCC-------------CCCC---Ccc-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQ-------------EESP---EGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-------------~~~~---t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
.+++++|.+|+|||||+.+++...... .+.+ ..+ .+ .+...+....+.+++|||+|+++|.
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 899999999999999999988433210 0111 001 12 2233333335788999999999874
No 214
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.39 E-value=2.2e-07 Score=59.70 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=21.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
++-++++++.+.+| ..++++|++|||||||+ +.+.+.
T Consensus 10 ~~~l~~isl~i~~G---~~~~lvGpsGsGKSTLl-~~L~g~ 46 (218)
T 1z6g_A 10 HSSGLVPRGSMNNI---YPLVICGPSGVGKGTLI-KKLLNE 46 (218)
T ss_dssp ------------CC---CCEEEECSTTSSHHHHH-HHHHHH
T ss_pred cccccCCceecCCC---CEEEEECCCCCCHHHHH-HHHHhh
Confidence 45588999999999 89999999999999999 555544
No 215
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.39 E-value=5.3e-09 Score=66.68 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=27.0
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE 56 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t 56 (93)
..+++++|+.|||||||+.+++...|...+.++
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~ 70 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIAC 70 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEE
Confidence 389999999999999999999988765544443
No 216
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.37 E-value=5.2e-07 Score=62.68 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=41.0
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHhC--------CCCCC--CCC-----Ccc-ee-EEEEEECCeEEEEEEEecCCCCCC
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMTG--------AFLQE--ESP-----EGG-RF-KKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~~--------~f~~~--~~~-----t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
....+++++|..++|||||+.+++.. .|... .+. ..+ .. ...+.++.....+.+|||+|+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 44589999999999999999998862 22211 000 011 01 123334434467789999999987
Q ss_pred C
Q psy6968 85 Q 85 (93)
Q Consensus 85 ~ 85 (93)
.
T Consensus 89 ~ 89 (405)
T 2c78_A 89 I 89 (405)
T ss_dssp H
T ss_pred H
Confidence 4
No 217
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.35 E-value=1.2e-07 Score=66.63 Aligned_cols=25 Identities=40% Similarity=0.711 Sum_probs=22.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
...+++++|..++|||||+.+++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999864
No 218
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.35 E-value=3.5e-08 Score=70.82 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=43.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----cceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE----GGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t----~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
.+++++|..++|||||+.++....+.....+. .+.+ .+..++. .+.+|||+|+++|..++..
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~--~v~~~~~--~i~~iDTPGhe~f~~~~~~ 70 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY--HVETENG--MITFLDTPGHAAFTSMRAR 70 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCC--CCCTTSS--CCCEECCCTTTCCTTSBCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEE--EEEECCE--EEEEEECCCcHHHHHHHHH
Confidence 78999999999999999998876554332221 1211 2334453 5789999999999877643
No 219
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.34 E-value=4.9e-07 Score=69.22 Aligned_cols=48 Identities=29% Similarity=0.497 Sum_probs=40.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g 68 (93)
.+++++++++.+| ..++++|++|+|||||+ +.+.|. ..|+.| ++.+++
T Consensus 687 ~iL~dVSl~I~~G---eivaIiGpNGSGKSTLL-klLaGl----l~P~sG----~I~~~~ 734 (986)
T 2iw3_A 687 PQITDINFQCSLS---SRIAVIGPNGAGKSTLI-NVLTGE----LLPTSG----EVYTHE 734 (986)
T ss_dssp CSEEEEEEEEETT---CEEEECSCCCHHHHHHH-HHHTTS----SCCSEE----EEEECT
T ss_pred eeeeccEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEEcC
Confidence 5689999999999 99999999999999999 888887 467777 566654
No 220
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.33 E-value=9.1e-07 Score=62.18 Aligned_cols=69 Identities=16% Similarity=0.051 Sum_probs=44.3
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC-CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF-LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f-~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
..++++.+..+ ..+++||++|||||||+..++.... ...++.+ .......+.+++ ...+.+||+.|..+
T Consensus 147 ~~~i~lelk~g---~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLI---ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCS---CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCC
T ss_pred EeeeeeEEcCC---CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEecccccc
Confidence 46777888888 8999999999999999966554321 1112211 111122455554 24578999999754
No 221
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.33 E-value=1.7e-07 Score=68.25 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.8
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
....+++++|..++|||||+.+++.
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Confidence 4457899999999999999999863
No 222
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.33 E-value=7.4e-07 Score=62.00 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=40.8
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHh---CCCCCCCCC--Ccc-eeE-EEEEE-------------C--Ce----EEEEEEE
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMT---GAFLQEESP--EGG-RFK-KEVVI-------------D--GH----SHLLLIR 76 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~---~~f~~~~~~--t~~-~~~-~~~~~-------------~--g~----~i~~~i~ 76 (93)
...+++++|..++|||||+.+++. +.+.++..+ |.+ .|. ..+.. + +. ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 458999999999999999988873 344444444 422 232 22211 1 21 3689999
Q ss_pred ecCCCCCCC
Q psy6968 77 DEGVPPELQ 85 (93)
Q Consensus 77 d~~g~~~~~ 85 (93)
||.|+++|.
T Consensus 89 DtPGh~~f~ 97 (410)
T 1kk1_A 89 DAPGHEALM 97 (410)
T ss_dssp ECSSHHHHH
T ss_pred ECCChHHHH
Confidence 999988763
No 223
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.29 E-value=1.3e-06 Score=62.99 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.+++++|..++|||||+.+++
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 689999999999999999996
No 224
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.28 E-value=5.9e-07 Score=55.56 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.3
Q ss_pred eceeeeCCCCCeeeEEEECCCCCCHHHHHH
Q psy6968 13 SHEFTLARDVPDLRLGIVGSLASGKSALVH 42 (93)
Q Consensus 13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~ 42 (93)
++++.+.++ ..++++|++|||||||+.
T Consensus 1 ~vsl~i~~g---ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 1 SMKLTIPEL---SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp CEEEEEESS---EEEEEECCTTSCHHHHHH
T ss_pred CccccCCCC---EEEEEECCCCCCHHHHHH
Confidence 367888899 999999999999999995
No 225
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.28 E-value=3.6e-07 Score=63.21 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=35.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
+++++|..++|||||+.+++ +...|.+.-...+..++ ..+.+|||+|+++|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~ 74 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTL 74 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCH
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHH
Confidence 89999999999999998876 12233221011223333 468999999999984
No 226
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.28 E-value=1.1e-06 Score=61.54 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=22.7
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
...+++++|..++|||||+.+++.+.
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 34899999999999999999998653
No 227
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.28 E-value=1.1e-07 Score=66.82 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=29.5
Q ss_pred ceeeeceeeeCCCC-----------------CeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 9 TFVTSHEFTLARDV-----------------PDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 9 ~~~~~~~~~~~~~~-----------------~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++++.+.+|. ....++++|++|+|||||+ +.+.+.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLl-n~L~Gl 92 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI-NTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHH-HHHHTC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHH-HHHhCC
Confidence 45677788887772 1128999999999999999 556665
No 228
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.27 E-value=5.4e-07 Score=64.95 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=21.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++++|..|+|||||+.+++.
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 8999999999999999999986
No 229
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.27 E-value=5.9e-07 Score=63.69 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.9
Q ss_pred CCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
....+++++|..++|||||+.+++.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 3458999999999999999999874
No 230
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.26 E-value=1.7e-06 Score=60.36 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=38.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCC-cceeEEEEEECCe-------------E--EEEEEEecCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF-LQ-EESPE-GGRFKKEVVIDGH-------------S--HLLLIRDEGVPPE 83 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f-~~-~~~~t-~~~~~~~~~~~g~-------------~--i~~~i~d~~g~~~ 83 (93)
.++++||++|+|||||++.+++... .. .++.+ .......+.+++. . ..+.+||++|...
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 8999999999999999977776543 22 12211 1111236667652 1 3688999998543
No 231
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.26 E-value=4e-07 Score=63.21 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=38.6
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhC-------CCCCC--CCCC-----cc-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTG-------AFLQE--ESPE-----GG-RF-KKEVVIDGHSHLLLIRDEGVPPELQ 85 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~-------~f~~~--~~~t-----~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~ 85 (93)
.++++++|..++|||||+.+++.. .|... .+.. .+ .. ...+.++.....+.+|||+|+++|.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 489999999999999999998863 12110 0000 11 00 0112233334578899999998763
No 232
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.25 E-value=2.4e-06 Score=64.49 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=40.3
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhC------------CCCC----CCC--CCcc-ee-EEEEE------------ECCeEE
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTG------------AFLQ----EES--PEGG-RF-KKEVV------------IDGHSH 71 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~------------~f~~----~~~--~t~~-~~-~~~~~------------~~g~~i 71 (93)
..+++++|..++|||||+.+++.. .+.+ ++. .|.. .. ..... .++..+
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 479999999999999999999863 2211 011 1211 11 11111 245578
Q ss_pred EEEEEecCCCCCCCC
Q psy6968 72 LLLIRDEGVPPELQP 86 (93)
Q Consensus 72 ~~~i~d~~g~~~~~~ 86 (93)
.+++|||+|+++|..
T Consensus 99 ~i~liDTPG~~df~~ 113 (842)
T 1n0u_A 99 LINLIDSPGHVDFSS 113 (842)
T ss_dssp EEEEECCCCCCSSCH
T ss_pred eEEEEECcCchhhHH
Confidence 999999999999864
No 233
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.24 E-value=1.6e-06 Score=62.61 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=37.5
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL 72 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~ 72 (93)
+...++.+.+| ..++++|++|||||||+ +.+.+. ..|+.| ++.+++..+.
T Consensus 284 l~~~~~~i~~G---ei~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~~~~i~ 333 (538)
T 3ozx_A 284 LVVDNGEAKEG---EIIGILGPNGIGKTTFA-RILVGE----ITADEG----SVTPEKQILS 333 (538)
T ss_dssp EEECCEEEETT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSBC----CEESSCCCEE
T ss_pred EEeccceECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCeeeE
Confidence 34445567788 89999999999999999 888887 467777 5556665443
No 234
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.22 E-value=1.2e-06 Score=64.04 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=34.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC--CCCC-----CCCCC------cc-ee-EE--EEEE---CCeEEEEEEEecCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG--AFLQ-----EESPE------GG-RF-KK--EVVI---DGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~--~f~~-----~~~~t------~~-~~-~~--~~~~---~g~~i~~~i~d~~g~~~~ 84 (93)
.+++++|..++|||||+.+++.. .+.. .+..+ .+ .. .. .+.+ ++..+.+++|||+|+++|
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 68999999999999999999862 2211 11111 11 11 11 2222 567789999999999987
Q ss_pred C
Q psy6968 85 Q 85 (93)
Q Consensus 85 ~ 85 (93)
.
T Consensus 85 ~ 85 (599)
T 3cb4_D 85 S 85 (599)
T ss_dssp H
T ss_pred H
Confidence 4
No 235
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.21 E-value=5.9e-07 Score=63.99 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=38.0
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhCC-------CCCCCCC--CcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTGA-------FLQEESP--EGGRFKKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~~-------f~~~~~~--t~~~~~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
...+++++|..++|||||+.+++... +..+..+ |.+.-...+.+++ ..+.+|||+|+++|
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~ 86 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADL 86 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHH
Confidence 45899999999999999998888655 2222221 2111011234455 57889999998876
No 236
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.21 E-value=6.6e-07 Score=59.21 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=34.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-e-EEEEEECCeEEEEEEEecCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-F-KKEVVIDGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~-~~~~~~~g~~i~~~i~d~~g~~~~ 84 (93)
.+++++|.+|||||||++++....... ..++.+. . ...+.++. .+.+|||+|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence 589999999999999998888665422 1222221 0 11222222 5789999996643
No 237
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.20 E-value=1.3e-06 Score=56.80 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=21.2
Q ss_pred CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
...+++++++.+.++ ..++++|++|+||||++..+.
T Consensus 11 ~~~~l~~isl~i~~g---~iigI~G~~GsGKSTl~k~L~ 46 (245)
T 2jeo_A 11 VDLGTENLYFQSMRP---FLIGVSGGTASGKSTVCEKIM 46 (245)
T ss_dssp ------------CCS---EEEEEECSTTSSHHHHHHHHH
T ss_pred CceeecceeccCCCC---EEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999 999999999999999994443
No 238
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.20 E-value=7.1e-07 Score=61.31 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.4
Q ss_pred CeeeEEEECCCCCCHHHHHHH
Q psy6968 23 PDLRLGIVGSLASGKSALVHR 43 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r 43 (93)
.++|++++|..++||||++.+
T Consensus 4 ~~~klLLLG~geSGKSTi~KQ 24 (340)
T 4fid_A 4 KPITVMLLGSGESGKSTIAKQ 24 (340)
T ss_dssp CCEEEEEEECTTSSHHHHHHH
T ss_pred CcceEEEECCCCCcHHHHHHH
Confidence 458999999999999999753
No 239
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.19 E-value=3e-06 Score=62.73 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=37.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHh--CCCCC------------------CCCCCcceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMT--GAFLQ------------------EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~--~~f~~------------------~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
..+++++|..|+|||||+.+++. +.+.. +..+|...-...+.+++ ..+.+|||.|+++
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSSTT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCccc
Confidence 37999999999999999999984 22211 11112111111233333 6789999999988
Q ss_pred CC
Q psy6968 84 LQ 85 (93)
Q Consensus 84 ~~ 85 (93)
|.
T Consensus 90 f~ 91 (691)
T 1dar_A 90 FT 91 (691)
T ss_dssp CH
T ss_pred hH
Confidence 74
No 240
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.19 E-value=5.3e-06 Score=61.54 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=39.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh--CCCCCC------------------CCCCcceeEEEEEEC-----CeEEEEEEEecC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT--GAFLQE------------------ESPEGGRFKKEVVID-----GHSHLLLIRDEG 79 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~--~~f~~~------------------~~~t~~~~~~~~~~~-----g~~i~~~i~d~~ 79 (93)
.+++++|..|+|||||+.+++. +.+... ...|...-...+.++ +....+.+|||+
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP 90 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP 90 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence 7999999999999999999974 222210 001110001122232 345789999999
Q ss_pred CCCCCCC
Q psy6968 80 VPPELQP 86 (93)
Q Consensus 80 g~~~~~~ 86 (93)
|+++|..
T Consensus 91 G~~df~~ 97 (704)
T 2rdo_7 91 GHVDFTI 97 (704)
T ss_pred CccchHH
Confidence 9998853
No 241
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.17 E-value=4.4e-07 Score=60.30 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHh
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.++++++|++|+|||||++.+++
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999955443
No 242
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.16 E-value=2.8e-06 Score=56.63 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=23.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
.+++++|+.++|||||++++++..+
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 6899999999999999999998775
No 243
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.15 E-value=6.6e-07 Score=61.58 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=31.9
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
+++++.+.++ ..++++|++|+|||||+ +.+.+. ++|+.+
T Consensus 166 ~~l~~~i~~G---~~i~ivG~sGsGKSTll-~~l~~~----~~~~~g 204 (361)
T 2gza_A 166 SFLRRAVQLE---RVIVVAGETGSGKTTLM-KALMQE----IPFDQR 204 (361)
T ss_dssp HHHHHHHHTT---CCEEEEESSSSCHHHHH-HHHHTT----SCTTSC
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHH-HHHHhc----CCCCce
Confidence 6778888888 89999999999999999 666666 445555
No 244
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.15 E-value=2.6e-06 Score=61.42 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=30.5
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
.+.+++ .+.+| ..++++|++|+|||||+ +.+.+..
T Consensus 37 ~l~~vs-~i~~G---e~~~LvG~NGaGKSTLl-k~l~Gl~ 71 (538)
T 1yqt_A 37 VLYRLP-VVKEG---MVVGIVGPNGTGKSTAV-KILAGQL 71 (538)
T ss_dssp EEECCC-CCCTT---SEEEEECCTTSSHHHHH-HHHHTSS
T ss_pred cccCcC-cCCCC---CEEEEECCCCCCHHHHH-HHHhCCC
Confidence 567777 78889 99999999999999999 8888863
No 245
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.12 E-value=9.2e-06 Score=60.16 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=38.8
Q ss_pred eeeEEEECCCCCCHHHHHHHHHh--CCCCCC-----------C-------CCCcceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMT--GAFLQE-----------E-------SPEGGRFKKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~--~~f~~~-----------~-------~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
..+++++|..++|||||+.+++. +.+... + ..|...-...+.+++ ..+.+|||+|+.+
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHVD 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCcc
Confidence 47999999999999999999985 333210 0 001000012234444 5788999999998
Q ss_pred CCC
Q psy6968 84 LQP 86 (93)
Q Consensus 84 ~~~ 86 (93)
|..
T Consensus 88 f~~ 90 (693)
T 2xex_A 88 FTV 90 (693)
T ss_dssp CCH
T ss_pred hHH
Confidence 753
No 246
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.11 E-value=1e-06 Score=56.57 Aligned_cols=39 Identities=8% Similarity=0.010 Sum_probs=20.2
Q ss_pred CCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh-CC
Q psy6968 6 NSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT-GA 48 (93)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~-~~ 48 (93)
+..+...+.++.+.+| ..++++|++||||||++ +.+. +.
T Consensus 12 ~~~~~~~~~sl~v~~G---~ii~l~Gp~GsGKSTl~-~~L~~~~ 51 (231)
T 3lnc_A 12 LEAQTQGPGSMLKSVG---VILVLSSPSGCGKTTVA-NKLLEKQ 51 (231)
T ss_dssp ----------CCEECC---CEEEEECSCC----CHH-HHHHC--
T ss_pred hhhcccCCCCcccCCC---CEEEEECCCCCCHHHHH-HHHHhcC
Confidence 4456678889999999 89999999999999999 5555 44
No 247
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.11 E-value=2.5e-06 Score=62.42 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=36.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh--CCCCCC-----CCCC------cc-ee---EEEEEE---CCeEEEEEEEecCCCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT--GAFLQE-----ESPE------GG-RF---KKEVVI---DGHSHLLLIRDEGVPPEL 84 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~--~~f~~~-----~~~t------~~-~~---~~~~~~---~g~~i~~~i~d~~g~~~~ 84 (93)
.+++++|..++|||||+.+++. +.+... +..+ .+ .. ...+.+ ++..+.+.+|||+|+++|
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 6899999999999999999975 222110 1000 00 00 011222 566789999999999987
Q ss_pred C
Q psy6968 85 Q 85 (93)
Q Consensus 85 ~ 85 (93)
.
T Consensus 87 ~ 87 (600)
T 2ywe_A 87 S 87 (600)
T ss_dssp H
T ss_pred H
Confidence 4
No 248
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.09 E-value=1.8e-06 Score=58.99 Aligned_cols=26 Identities=31% Similarity=0.657 Sum_probs=23.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFL 50 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~ 50 (93)
.+|+++|+.+||||||++++++..|.
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 69999999999999999999887764
No 249
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.07 E-value=1.9e-06 Score=59.12 Aligned_cols=56 Identities=18% Similarity=0.069 Sum_probs=36.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCCC-CCCC-CCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAFL-QEES-PEGGRFKKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f~-~~~~-~t~~~~~~~~~~~g~~i~~~i~d~~g~ 81 (93)
.+|+++|.++||||||+.+++...+. ..|. .|.......+.+++. ..+.+|||+|+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~ 216 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGL 216 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCC
Confidence 47899999999999999888765432 1222 222221224556542 36789999985
No 250
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.07 E-value=7.7e-07 Score=60.30 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=29.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
.+++++++.+.+| ..++|+|++|+|||||+ +.+.+
T Consensus 114 ~vL~~vsl~i~~G---e~vaIvGpsGsGKSTLl-~lL~g 148 (305)
T 2v9p_A 114 NALKLWLKGIPKK---NCLAFIGPPNTGKSMLC-NSLIH 148 (305)
T ss_dssp HHHHHHHHTCTTC---SEEEEECSSSSSHHHHH-HHHHH
T ss_pred hhhccceEEecCC---CEEEEECCCCCcHHHHH-HHHhh
Confidence 3577889999999 99999999999999999 55543
No 251
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.07 E-value=3.3e-06 Score=52.85 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=21.1
Q ss_pred eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
+.+.+| ..++++|++||||||++ +.+.+.
T Consensus 2 ~~m~~g---~ii~l~Gp~GsGKSTl~-~~L~~~ 30 (205)
T 3tr0_A 2 NAMNKA---NLFIISAPSGAGKTSLV-RALVKA 30 (205)
T ss_dssp ---CCC---CEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CcCCCC---cEEEEECcCCCCHHHHH-HHHHhh
Confidence 345566 78999999999999999 555443
No 252
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.05 E-value=5.8e-06 Score=59.65 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=31.8
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
++..++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.|
T Consensus 302 l~~~~~~i~~G---e~~~i~G~NGsGKSTLl-k~l~Gl----~~p~~G 341 (538)
T 1yqt_A 302 LEVEPGEIKKG---EVIGIVGPNGIGKTTFV-KMLAGV----EEPTEG 341 (538)
T ss_dssp EEECCEEEETT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSBC
T ss_pred EEeCccccCCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe
Confidence 45555566788 89999999999999999 888876 456655
No 253
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.03 E-value=7.4e-07 Score=60.74 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=36.2
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
+++++++.+.++ ..++++|++|+|||||+ +.+.+. +.|..+ .+.++|.
T Consensus 160 ~l~~l~~~i~~g---~~v~i~G~~GsGKTTll-~~l~g~----~~~~~g----~i~i~~~ 207 (330)
T 2pt7_A 160 AISAIKDGIAIG---KNVIVCGGTGSGKTTYI-KSIMEF----IPKEER----IISIEDT 207 (330)
T ss_dssp HHHHHHHHHHHT---CCEEEEESTTSCHHHHH-HHGGGG----SCTTSC----EEEEESS
T ss_pred HHhhhhhhccCC---CEEEEECCCCCCHHHHH-HHHhCC----CcCCCc----EEEECCe
Confidence 456677777778 79999999999999999 777776 455666 5555543
No 254
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.02 E-value=6.9e-06 Score=60.11 Aligned_cols=40 Identities=28% Similarity=0.532 Sum_probs=31.9
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
++..++.+.+| ..++++|++|+|||||+ +.+.+. ..|+.|
T Consensus 372 l~~~~~~v~~G---ei~~i~G~NGsGKSTLl-k~l~Gl----~~p~~G 411 (607)
T 3bk7_A 372 LEVEPGEIRKG---EVIGIVGPNGIGKTTFV-KMLAGV----EEPTEG 411 (607)
T ss_dssp EEECCEEEETT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSBS
T ss_pred EEecccccCCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce
Confidence 45555667788 89999999999999999 888886 456655
No 255
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.02 E-value=6.5e-06 Score=60.25 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=30.2
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
.+.+++ .+.+| ..++++|++|+|||||+ +.+.+..
T Consensus 107 ~l~~vs-~i~~G---e~~~LiG~NGsGKSTLl-kiL~Gll 141 (607)
T 3bk7_A 107 VLYRLP-IVKDG---MVVGIVGPNGTGKTTAV-KILAGQL 141 (607)
T ss_dssp EEECCC-CCCTT---SEEEEECCTTSSHHHHH-HHHTTSS
T ss_pred eeCCCC-CCCCC---CEEEEECCCCChHHHHH-HHHhCCC
Confidence 567777 77888 99999999999999999 8888863
No 256
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.00 E-value=9e-06 Score=54.27 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=32.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce--eEEEEEECCeEEEEEEEecCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRDEGVPP 82 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~--~~~~~~~~g~~i~~~i~d~~g~~ 82 (93)
..+++++|.+|||||||+++++...... ..+..+. ....+.++. .+.+|||+|--
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 3799999999999999998887654211 1111110 011222332 57899999964
No 257
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.99 E-value=3.7e-06 Score=53.25 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=21.9
Q ss_pred eeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 17 TLARDVPDLRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
++.+| ..++++|++|||||||+ +.+.+..
T Consensus 16 ~i~~G---ei~~l~GpnGsGKSTLl-~~l~gl~ 44 (207)
T 1znw_A 16 PAAVG---RVVVLSGPSAVGKSTVV-RCLRERI 44 (207)
T ss_dssp ---CC---CEEEEECSTTSSHHHHH-HHHHHHS
T ss_pred CCCCC---CEEEEECCCCCCHHHHH-HHHHhhC
Confidence 56777 89999999999999999 6665543
No 258
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.97 E-value=1.7e-06 Score=58.40 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=24.9
Q ss_pred eceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++...++ ..++++|++||||||++ +.+.+.
T Consensus 92 ~l~~~~~~g---~vi~lvG~nGsGKTTll-~~Lag~ 123 (302)
T 3b9q_A 92 ELQLGFRKP---AVIMIVGVNGGGKTTSL-GKLAHR 123 (302)
T ss_dssp SCCCCSSSC---EEEEEECCTTSCHHHHH-HHHHHH
T ss_pred ccccccCCC---cEEEEEcCCCCCHHHHH-HHHHHH
Confidence 455556667 89999999999999999 545444
No 259
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=6.7e-06 Score=51.70 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=20.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
...+++++.+.++ ..++++|++||||||++..+.
T Consensus 13 ~~~~~~~~~~~~~---~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 13 LGTENLYFQSNAM---VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -----------CC---CEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCceeEecCCC---CEEEEEcCCCCCHHHHHHHHH
Confidence 3467888888887 789999999999999995544
No 260
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.96 E-value=2.4e-06 Score=60.32 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=36.2
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~ 69 (93)
..++++ +++.+| .+++++|++|||||||+ +.+.+. ..|+.+ .+.++|+
T Consensus 146 ~vld~v-l~i~~G---q~~~IvG~sGsGKSTLl-~~Iag~----~~~~~G----~i~~~G~ 193 (438)
T 2dpy_A 146 RAINAL-LTVGRG---QRMGLFAGSGVGKSVLL-GMMARY----TRADVI----VVGLIGE 193 (438)
T ss_dssp HHHHHH-SCCBTT---CEEEEEECTTSSHHHHH-HHHHHH----SCCSEE----EEEEESC
T ss_pred eEEeee-EEecCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCeE----EEEEece
Confidence 356778 889999 99999999999999999 666655 345555 4555554
No 261
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.95 E-value=2.7e-06 Score=60.86 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=27.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++++.+.+ ..++++|++|||||||+ +.+.+.
T Consensus 18 ~~l~~vsl~i~~----e~~~liG~nGsGKSTLl-~~l~Gl 52 (483)
T 3euj_A 18 NGFFARTFDFDE----LVTTLSGGNGAGKSTTM-AGFVTA 52 (483)
T ss_dssp TTEEEEEEECCS----SEEEEECCTTSSHHHHH-HHHHHH
T ss_pred ccccceEEEEcc----ceEEEECCCCCcHHHHH-HHHhcC
Confidence 347788887754 57899999999999999 666544
No 262
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.91 E-value=1.2e-05 Score=58.12 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=24.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFL 50 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~ 50 (93)
..+|+++|..|+|||||++++++..+.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 479999999999999999999987763
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.90 E-value=7.9e-06 Score=51.58 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.0
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++|+|||||+..++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999995443
No 264
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.89 E-value=1.1e-05 Score=61.98 Aligned_cols=38 Identities=29% Similarity=0.515 Sum_probs=32.2
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..+++++++.+.+| ..++++|++|+|||||+.-+.++.
T Consensus 448 ~~iL~~vsl~I~~G---e~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 448 KILLNKTQLRLKRA---RRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEEEEEEEEETT---CEEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEeEecceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999 999999999999999994444454
No 265
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.89 E-value=1.1e-06 Score=58.11 Aligned_cols=34 Identities=21% Similarity=0.073 Sum_probs=26.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..+++++ +.++ ..++++|++|+||||++ +.+.+.
T Consensus 15 ~vl~~i~--i~~g---~~v~i~Gp~GsGKSTll-~~l~g~ 48 (261)
T 2eyu_A 15 DKVLELC--HRKM---GLILVTGPTGSGKSTTI-ASMIDY 48 (261)
T ss_dssp THHHHGG--GCSS---EEEEEECSTTCSHHHHH-HHHHHH
T ss_pred HHHHHHh--hCCC---CEEEEECCCCccHHHHH-HHHHHh
Confidence 3455666 6677 89999999999999999 555554
No 266
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.88 E-value=3.6e-06 Score=65.72 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=39.6
Q ss_pred CCCCeeeEEEECCCCCCHHHHHHHHHhC-------CCCCC--CC-----CCcce-e-EEEEEECCeEEEEEEEecCCCCC
Q psy6968 20 RDVPDLRLGIVGSLASGKSALVHRFMTG-------AFLQE--ES-----PEGGR-F-KKEVVIDGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~-------~f~~~--~~-----~t~~~-~-~~~~~~~g~~i~~~i~d~~g~~~ 83 (93)
+.+...+++++|..++|||||+.+++.. .|... .+ .+.+. . ...+.++.....+.+|||+|+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 3445689999999999999999998763 11110 01 11110 0 01123334446789999999988
Q ss_pred CC
Q psy6968 84 LQ 85 (93)
Q Consensus 84 ~~ 85 (93)
|.
T Consensus 372 F~ 373 (1289)
T 3avx_A 372 YV 373 (1289)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 267
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.88 E-value=3.9e-05 Score=53.28 Aligned_cols=55 Identities=18% Similarity=0.088 Sum_probs=37.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC-CCCCCCCC-cceeEEEEEECCeEEEEEEEecCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA-FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVP 81 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~ 81 (93)
..|++||.++||||||++.+.... -..+|+-+ .......+.+++. .+++.||+|-
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl 129 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGI 129 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGG
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCc
Confidence 589999999999999997766533 12233222 3333446777775 5678999984
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.87 E-value=1.2e-05 Score=49.79 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=21.6
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
+.++ ..++++|++|+||||++ +.+.+.
T Consensus 6 i~~g---~~i~l~G~~GsGKSTl~-~~La~~ 32 (191)
T 1zp6_A 6 DLGG---NILLLSGHPGSGKSTIA-EALANL 32 (191)
T ss_dssp CCTT---EEEEEEECTTSCHHHHH-HHHHTC
T ss_pred CCCC---eEEEEECCCCCCHHHHH-HHHHhc
Confidence 3455 78999999999999999 555554
No 269
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.87 E-value=8.5e-06 Score=59.89 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=28.6
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHH
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALV 41 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~ 41 (93)
...++++++++.+| ..++++|++|||||||+
T Consensus 31 ~~~L~~vsl~i~~G---e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRG---KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETT---SEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCC---CEEEEECCCCCCHHHHh
Confidence 45689999999999 99999999999999996
No 270
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.86 E-value=1.2e-05 Score=51.80 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=20.9
Q ss_pred eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
-.+++| ..++++|++|||||||+. .+.+.
T Consensus 11 ~~~~~G---~ii~l~GpsGsGKSTLlk-~L~g~ 39 (219)
T 1s96_A 11 HHMAQG---TLYIVSAPSGAGKSSLIQ-ALLKT 39 (219)
T ss_dssp ----CC---CEEEEECCTTSCHHHHHH-HHHHH
T ss_pred ccCCCC---cEEEEECCCCCCHHHHHH-HHhcc
Confidence 346677 899999999999999994 45444
No 271
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.86 E-value=4e-06 Score=59.16 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=27.6
Q ss_pred eeeceeeeCCCCCeee--EEEECCCCCCHHHHHHHHHhCC
Q psy6968 11 VTSHEFTLARDVPDLR--LGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~k--v~lvG~~g~GKtsl~~r~~~~~ 48 (93)
++++++.+.+| .. ++|+|++|+|||||++. +.+.
T Consensus 30 L~~vsl~i~~G---ei~~vaLvG~nGaGKSTLln~-L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQG---FCFNILCVGETGLGKSTLMDT-LFNT 65 (427)
T ss_dssp HHHHHHSCC-C---CEEEEEEECSTTSSSHHHHHH-HHTS
T ss_pred cCCCceEecCC---CeeEEEEECCCCCCHHHHHHH-HhCc
Confidence 77888888888 66 99999999999999954 4444
No 272
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.86 E-value=4.2e-06 Score=57.47 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=28.7
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
.++++ +++.+| .+++++|++|+|||||+ +.+.+.
T Consensus 61 ald~l-l~i~~G---q~~gIiG~nGaGKTTLl-~~I~g~ 94 (347)
T 2obl_A 61 AIDGL-LTCGIG---QRIGIFAGSGVGKSTLL-GMICNG 94 (347)
T ss_dssp HHHHH-SCEETT---CEEEEEECTTSSHHHHH-HHHHHH
T ss_pred EEEee-eeecCC---CEEEEECCCCCCHHHHH-HHHhcC
Confidence 46677 888999 99999999999999999 555554
No 273
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.85 E-value=3.6e-06 Score=58.13 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=24.9
Q ss_pred eceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
.+++.+.++ ..++++|++||||||++ +.+.+.
T Consensus 149 ~l~l~~~~g---~vi~lvG~nGsGKTTll-~~Lag~ 180 (359)
T 2og2_A 149 ELQLGFRKP---AVIMIVGVNGGGKTTSL-GKLAHR 180 (359)
T ss_dssp SCCCCSSSS---EEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CcceecCCC---eEEEEEcCCCChHHHHH-HHHHhh
Confidence 455556667 89999999999999999 555544
No 274
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.80 E-value=2e-05 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|++|||||||+..++.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6789999999999999965544
No 275
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.80 E-value=1.7e-05 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=18.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
+++++|++|+|||||+ +.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl-~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV-KKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 6899999999999999 555544
No 276
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.80 E-value=6.9e-06 Score=59.00 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=26.4
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
+++++.+.++ ..++++|++||||||++ +.+.+.
T Consensus 284 ~~Isl~i~~G---eVI~LVGpNGSGKTTLl-~~LAgl 316 (503)
T 2yhs_A 284 EPLNVEGKAP---FVILMVGVNGVGKTTTI-GKLARQ 316 (503)
T ss_dssp CCCCCCSCTT---EEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCceeeccCC---eEEEEECCCcccHHHHH-HHHHHH
Confidence 4567777777 89999999999999999 445444
No 277
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.79 E-value=3e-05 Score=57.51 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=22.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
++|+++|+.++|||||++.+++..+
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 8999999999999999999987664
No 278
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.78 E-value=1.3e-05 Score=58.86 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=28.4
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHH
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVH 42 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~ 42 (93)
..++++++++.+| ..++++|++|||||||++
T Consensus 336 ~~L~~vsl~I~~G---e~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 336 HNLKNVSVKIPLG---TFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp TTCCSEEEEEETT---SEEEEECSTTSSHHHHHT
T ss_pred cccccceeEecCC---CEEEEEeeCCCCHHHHHH
Confidence 4589999999999 999999999999999983
No 279
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.78 E-value=1.7e-05 Score=49.49 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=21.4
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
+.++ ..++++|++||||||++ +.+.+.+
T Consensus 3 i~~g---~~i~l~G~~GsGKSTl~-~~L~~~~ 30 (207)
T 2j41_A 3 NEKG---LLIVLSGPSGVGKGTVR-KRIFEDP 30 (207)
T ss_dssp -CCC---CEEEEECSTTSCHHHHH-HHHHHCT
T ss_pred CCCC---CEEEEECCCCCCHHHHH-HHHHHhh
Confidence 3456 78999999999999999 5554443
No 280
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.75 E-value=3.2e-05 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.628 Sum_probs=21.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
..++++|+||+|||||+ +.+.+..
T Consensus 26 ei~gLiGpNGaGKSTLl-kiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVL-KILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHH-HHHTTSS
T ss_pred CEEEEECCCCCcHHHHH-HHHhcCC
Confidence 88999999999999999 8888763
No 281
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.74 E-value=1.6e-05 Score=58.02 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=24.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCC-CcceeEEEEEECCeEE
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSH 71 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-t~~~~~~~~~~~g~~i 71 (93)
.++|+|++|||||||+ +.+.|.+ .| +.| .++++|..+
T Consensus 47 ~iaIvG~nGsGKSTLL-~~I~Gl~----~P~~sG----~vt~~g~~i 84 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVL-EALSGVA----LPRGSG----IVTRCPLVL 84 (608)
T ss_dssp CEECCCCTTSCHHHHH-HHHHSCC---------------CCCSCEEE
T ss_pred eEEEECCCCChHHHHH-HHHhCCC----CCCCCC----eEEEcCEEE
Confidence 5999999999999999 7777763 35 455 556666554
No 282
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.74 E-value=1e-05 Score=55.18 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=28.8
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.+++++++.+.++ ..++++|++|+|||||+..++
T Consensus 43 ~~l~~i~~~~~~g---~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 43 DLIDAVLPQTGRA---IRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHHGGGCCCS---EEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHhCCcccCCC---eEEEEECCCCCCHHHHHHHHH
Confidence 3467778888888 999999999999999996665
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.73 E-value=2.9e-05 Score=49.56 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|++|||||||+..++.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHh
Confidence 6889999999999999966654
No 284
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.73 E-value=3.5e-05 Score=56.47 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=31.6
Q ss_pred eeeeceeeeCCCCC--eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968 10 FVTSHEFTLARDVP--DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58 (93)
Q Consensus 10 ~~~~~~~~~~~~~~--~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~ 58 (93)
.+.++++.+.++.. -..++++|++|+|||||+ +.+.+. ..|+.|
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLl-k~l~Gl----~~p~~G 407 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLI-KLLAGA----LKPDEG 407 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHH-HHHHTS----SCCSBC
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHH-HHHhcC----CCCCCC
Confidence 34567777766611 145899999999999999 888877 345544
No 285
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.71 E-value=3.5e-05 Score=56.43 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.1
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
+.+| ..++++|++|+|||||+ +.+.+..
T Consensus 100 ~~~G---ei~~LvGpNGaGKSTLL-kiL~Gll 127 (608)
T 3j16_B 100 PRPG---QVLGLVGTNGIGKSTAL-KILAGKQ 127 (608)
T ss_dssp CCTT---SEEEEECCTTSSHHHHH-HHHHTSS
T ss_pred CCCC---CEEEEECCCCChHHHHH-HHHhcCC
Confidence 4567 89999999999999999 8888763
No 286
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.70 E-value=1.7e-05 Score=53.19 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++|||||||+ +.+.+.
T Consensus 170 eiv~l~G~sG~GKSTll-~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLL-NAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHH-HHHSTT
T ss_pred CeEEEECCCCCcHHHHH-HHhccc
Confidence 67899999999999999 666655
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.69 E-value=2.7e-05 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=18.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++||||||++. .+.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~-~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK-KLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHhh
Confidence 357899999999999994 44443
No 288
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.67 E-value=3.6e-05 Score=49.21 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=21.6
Q ss_pred eeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 17 TLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.+.+| ..++++|++|+|||||+..++
T Consensus 26 gi~~G---~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEG---TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETT---CEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCC---cEEEEEeCCCCCHHHHHHHHH
Confidence 35667 889999999999999996555
No 289
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.66 E-value=1.2e-05 Score=55.03 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=25.1
Q ss_pred eceeeeCC--CCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 13 SHEFTLAR--DVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 13 ~~~~~~~~--~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
.+++.+.+ + .+++++|++|+|||||+ +.+.+.
T Consensus 160 ~v~~~v~~~lg---~k~~IvG~nGsGKSTLl-k~L~gl 193 (365)
T 1lw7_A 160 FIPKEARPFFA---KTVAILGGESSGKSVLV-NKLAAV 193 (365)
T ss_dssp GSCTTTGGGTC---EEEEEECCTTSHHHHHH-HHHHHH
T ss_pred hCCHHHHHhhh---CeEEEECCCCCCHHHHH-HHHHHH
Confidence 34555555 5 89999999999999999 666665
No 290
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.66 E-value=3.5e-05 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++|+|++|+|||||+ +.+.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~-~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLS-NPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHH
Confidence 89999999999999999 555444
No 291
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.65 E-value=6.7e-06 Score=55.30 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++|+|++|+|||||+ +.+.+.
T Consensus 81 ~iigI~G~~GsGKSTl~-~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA-RVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHH-HHHHHH
T ss_pred EEEEEECCCCCCHHHHH-HHHHHH
Confidence 88999999999999999 555554
No 292
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.64 E-value=1.3e-05 Score=56.96 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=27.3
Q ss_pred eceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
++++.+.+| ..++|+|++|||||||+ |.+.+.
T Consensus 130 ~vsl~i~~G---e~v~IvGpnGsGKSTLl-r~L~Gl 161 (460)
T 2npi_A 130 KIRMSNFEG---PRVVIVGGSQTGKTSLS-RTLCSY 161 (460)
T ss_dssp HHHHHSSSC---CCEEEEESTTSSHHHHH-HHHHHT
T ss_pred cCceEeCCC---CEEEEECCCCCCHHHHH-HHHhCc
Confidence 466777888 89999999999999999 777665
No 293
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.63 E-value=1.5e-05 Score=53.85 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=19.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++||||||++ +.+.+.
T Consensus 103 ~vi~lvG~nGsGKTTll-~~Lagl 125 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI-AKLGRY 125 (304)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHH
T ss_pred eEEEEECCCCCcHHHHH-HHHHHH
Confidence 78999999999999999 555544
No 294
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.63 E-value=8.5e-06 Score=58.36 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=30.5
Q ss_pred ceeeecee-eeCCCCCeeeEEEECCCCCCHHHHHHHH-HhCC
Q psy6968 9 TFVTSHEF-TLARDVPDLRLGIVGSLASGKSALVHRF-MTGA 48 (93)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~kv~lvG~~g~GKtsl~~r~-~~~~ 48 (93)
..++++++ .+.+| ..++++|++|+|||||+..+ +.+.
T Consensus 26 ~~Ld~i~~G~i~~G---e~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 26 EGFDDISHGGLPIG---RSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp TTHHHHTTSSEETT---SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCC---eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34678888 88899 99999999999999999665 3443
No 295
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.62 E-value=4.2e-05 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=21.4
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
+.++ ..++++|++|+|||||+..++.
T Consensus 22 i~~G---~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQ---AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESS---EEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCC---cEEEEECCCCCCHHHHHHHHHH
Confidence 4566 7899999999999999955554
No 296
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.61 E-value=3.4e-05 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=19.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++|+||||++ +.+.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~-~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLA-QALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHHH
T ss_pred EEEEEECCCCCCHHHHH-HHHHHH
Confidence 78999999999999999 555443
No 297
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.59 E-value=6.1e-05 Score=47.70 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=19.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..++++|++|+||||++..++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 67899999999999999655543
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.57 E-value=2.5e-05 Score=50.00 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=21.9
Q ss_pred CCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 19 ARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 19 ~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
.+| ..++++|++|+|||||+ +.+.+.
T Consensus 20 ~~G---e~~~liG~nGsGKSTLl-~~l~Gl 45 (208)
T 3b85_A 20 DTN---TIVFGLGPAGSGKTYLA-MAKAVQ 45 (208)
T ss_dssp HHC---SEEEEECCTTSSTTHHH-HHHHHH
T ss_pred cCC---CEEEEECCCCCCHHHHH-HHHhcC
Confidence 456 78999999999999999 666664
No 299
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.56 E-value=1.8e-05 Score=56.90 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=26.3
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
+..+++.+.++ ..++++|++|+||||++ +.+.+.
T Consensus 250 l~~l~~~v~~g---~~i~I~GptGSGKTTlL-~aL~~~ 283 (511)
T 2oap_1 250 LAYLWLAIEHK---FSAIVVGETASGKTTTL-NAIMMF 283 (511)
T ss_dssp HHHHHHHHHTT---CCEEEEESTTSSHHHHH-HHHGGG
T ss_pred HHHHHHHHhCC---CEEEEECCCCCCHHHHH-HHHHhh
Confidence 44555666677 67999999999999999 566655
No 300
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.55 E-value=4.9e-05 Score=51.41 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.1
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++ ..++|+|++|+|||||+ +.+.+.
T Consensus 87 ~~~g---~ivgI~G~sGsGKSTL~-~~L~gl 113 (312)
T 3aez_A 87 RPVP---FIIGVAGSVAVGKSTTA-RVLQAL 113 (312)
T ss_dssp SCCC---EEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCC---EEEEEECCCCchHHHHH-HHHHhh
Confidence 4556 89999999999999999 556554
No 301
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.54 E-value=5e-05 Score=46.76 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.0
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++|+|||+|+..++
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999995443
No 302
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.53 E-value=3.3e-05 Score=51.17 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=28.3
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.++++++.+.+| ..++++|++|+|||||+..++.
T Consensus 24 ~Ld~i~~~l~~G---~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 24 GINDKTLGARGG---EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp THHHHHCSBCTT---CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhcCCCCC---eEEEEEeCCCCCHHHHHHHHHH
Confidence 356677788888 8999999999999999965554
No 303
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.51 E-value=8.1e-05 Score=45.74 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=21.9
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.+.++.+.++ ..+++|++|+|||||+ +.+
T Consensus 18 ~~~~~~~~~g----~~~i~G~NGsGKStll-~ai 46 (182)
T 3kta_A 18 KKVVIPFSKG----FTAIVGANGSGKSNIG-DAI 46 (182)
T ss_dssp SCEEEECCSS----EEEEEECTTSSHHHHH-HHH
T ss_pred ccEEEecCCC----cEEEECCCCCCHHHHH-HHH
Confidence 4456666555 5789999999999999 444
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.50 E-value=7.5e-05 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
-|+|+||+|+||+||+.+++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999777653
No 305
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.49 E-value=3e-05 Score=52.54 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=20.9
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
+.++ ..++++|++|||||||++. +.+.
T Consensus 170 ~~~G---~~~~lvG~sG~GKSTLln~-L~g~ 196 (307)
T 1t9h_A 170 HFQD---KTTVFAGQSGVGKSSLLNA-ISPE 196 (307)
T ss_dssp GGTT---SEEEEEESHHHHHHHHHHH-HCC-
T ss_pred hcCC---CEEEEECCCCCCHHHHHHH-hccc
Confidence 3456 7899999999999999954 5443
No 306
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.49 E-value=1.1e-05 Score=50.35 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=18.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++|+|||||+ +.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~-~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI-TRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHH
Confidence 46889999999999999 445444
No 307
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.47 E-value=9e-05 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
.+++++|++|+||||++. .+.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~-~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIH-KASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHH-HHHHH
T ss_pred CEEEEECCCCChHHHHHH-HHHhh
Confidence 478999999999999994 44443
No 308
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.47 E-value=2.4e-05 Score=53.34 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++||||||++..++
T Consensus 130 ~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 899999999999999994444
No 309
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.46 E-value=0.00011 Score=46.20 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=21.2
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
+.++ ..++++|++||||||++.++..
T Consensus 9 ~~~~---~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARI---PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCC---CCEEEECCTTSCHHHHHHHHHH
T ss_pred cccC---CEEEEECCCCCCHHHHHHHHHH
Confidence 4455 6889999999999999966654
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.45 E-value=0.00012 Score=45.94 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=17.6
Q ss_pred eeEEEECCCCCCHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~ 44 (93)
..++++|++|+||||++..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999444
No 311
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.44 E-value=6.1e-05 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++|||||||++.++
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 678999999999999996655
No 312
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.44 E-value=2.2e-05 Score=51.68 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=27.4
Q ss_pred ceeeeceeeeCC---CCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 9 TFVTSHEFTLAR---DVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 9 ~~~~~~~~~~~~---~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.+++++++.+.+ + ..++++|.+||||||+...+.
T Consensus 33 ~~l~~~~~~i~~~l~g---~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNG---RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp HHHHHHHHTTHHHHTT---CCEEEECSTTSCHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCC---CEEEEECCCCCCHHHHHHHHH
Confidence 356777777777 7 799999999999999994443
No 313
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.43 E-value=0.00015 Score=45.46 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=17.6
Q ss_pred eeEEEECCCCCCHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~ 44 (93)
..++++|++||||||++..+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 78999999999999999443
No 314
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.42 E-value=0.00016 Score=52.85 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=35.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----CcceeEEEEEE-CCeEEEEEEEecCCCCC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP-----EGGRFKKEVVI-DGHSHLLLIRDEGVPPE 83 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-----t~~~~~~~~~~-~g~~i~~~i~d~~g~~~ 83 (93)
...|+++|.+++|||||++++++....-.... |.+.+.....+ ......+.++||.|-..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 47889999999999999988877542101211 12211111111 11224577899998553
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.42 E-value=0.00011 Score=45.50 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=17.5
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++|+||||++..+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 468899999999999995443
No 316
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=0.00013 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..++++|++||||||++ +.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~-~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIG-RQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHH
Confidence 57999999999999999 55544
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.41 E-value=0.00012 Score=47.30 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|++|+||||++ +.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~-k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC-QRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHH
Confidence 68999999999999999 4454
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.40 E-value=0.00015 Score=44.91 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=21.4
Q ss_pred eeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 15 EFTLARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 15 ~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
++...++ ..++++|.+||||||+...+..
T Consensus 4 ~~~~~~~---~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 4 SMEQPKG---INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp --CCCSS---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCCC---CEEEEECCCCCCHHHHHHHHHH
Confidence 4444555 6899999999999999955544
No 319
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.37 E-value=5.2e-05 Score=50.22 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=22.2
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
++++++.+.+| ++++|++|+|||+|+ +.+.+
T Consensus 36 l~~~~l~~~~G-----vlL~Gp~GtGKTtLa-kala~ 66 (274)
T 2x8a_A 36 FKALGLVTPAG-----VLLAGPPGCGKTLLA-KAVAN 66 (274)
T ss_dssp HHHTTCCCCSE-----EEEESSTTSCHHHHH-HHHHH
T ss_pred HHHcCCCCCCe-----EEEECCCCCcHHHHH-HHHHH
Confidence 34445544433 899999999999999 55544
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.37 E-value=0.00017 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
..++++|.+|+||||++ +.+.+.+
T Consensus 22 ~~i~i~G~~GsGKSTl~-~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLA-KNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHTTS
T ss_pred eEEEEECCCCCCHHHHH-HHHHHhc
Confidence 78999999999999999 5555543
No 321
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.36 E-value=0.00019 Score=43.75 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=17.9
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++|+||||++..+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 689999999999999995443
No 322
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.36 E-value=0.00021 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|++|||||||++.++.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 6899999999999999955544
No 323
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.35 E-value=0.00013 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
.+++++|..|+|||||+.+++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 689999999999999999988753
No 324
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.35 E-value=0.00017 Score=45.40 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=22.1
Q ss_pred eeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 17 TLARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+.++ ..++++|++|+|||||+..++.
T Consensus 19 gi~~G---~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 19 GIPQG---FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp SEETT---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCC---CEEEEEcCCCCCHHHHHHHHHH
Confidence 35566 7899999999999999976663
No 325
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.32 E-value=4.8e-05 Score=52.47 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=25.4
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.++++++.+.++ .++++|++|+|||||+ +.+
T Consensus 50 ~l~~v~l~~~~G----~~~lvG~NGaGKStLl-~aI 80 (415)
T 4aby_A 50 TITQLELELGGG----FCAFTGETGAGKSIIV-DAL 80 (415)
T ss_dssp TEEEEEEECCSS----EEEEEESHHHHHHHHT-HHH
T ss_pred ceeeEEEecCCC----cEEEECCCCCCHHHHH-HHH
Confidence 367788887766 7889999999999999 444
No 326
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.29 E-value=0.00025 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|.+|+||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999966654
No 327
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.29 E-value=0.00022 Score=46.52 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|++||||||++ +.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~-k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLC-KALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHH
Confidence 68999999999999999 4444
No 328
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.28 E-value=0.00022 Score=43.06 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|.+||||||++..+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999965543
No 329
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.25 E-value=0.00027 Score=48.31 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+|+|||||+++++.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999999988875
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00025 Score=44.41 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..++++|++||||||++ +.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~-~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIA-NLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHH-HHHHT
T ss_pred cEEEEECCCCCCHHHHH-HHHHH
Confidence 56899999999999999 55444
No 331
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.25 E-value=0.00029 Score=44.17 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.1
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
+.++ ..++++|++|+|||||+..++.
T Consensus 17 i~~G---~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPG---VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTT---SEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCC---EEEEEECCCCCCHHHHHHHHHH
Confidence 4566 7899999999999999977765
No 332
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.24 E-value=0.0003 Score=44.47 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=17.9
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++||||||++..+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999994443
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00025 Score=43.52 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|.+||||||++..+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999996554
No 334
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.23 E-value=0.00027 Score=44.93 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=22.3
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
+.++ ..++++|++|+|||||+..++..
T Consensus 21 i~~G---~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETG---SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETT---SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCC---eEEEEECCCCCcHHHHHHHHHHH
Confidence 3456 78999999999999999777663
No 335
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.23 E-value=0.00025 Score=53.51 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=26.6
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++++++. .++ ..++++|++|+||||++ |.+.
T Consensus 596 ~vlndisl~-~~g---~i~~ItGpNGsGKSTlL-r~ia 628 (800)
T 1wb9_A 596 FIANPLNLS-PQR---RMLIITGPNMGGKSTYM-RQTA 628 (800)
T ss_dssp CCCEEEEEC-SSS---CEEEEECCTTSSHHHHH-HHHH
T ss_pred eeeeccccc-CCC---cEEEEECCCCCChHHHH-HHHH
Confidence 456888887 666 78999999999999999 4443
No 336
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.22 E-value=0.00011 Score=50.93 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=26.4
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.++++++.+.++ ..++++|++|+|||||+..+.
T Consensus 158 ~l~~~~~~i~~~---~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 158 FLKCMVYNIPKK---RYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp HHHHHHHCCTTC---CEEEEECSTTSSHHHHHHHHH
T ss_pred HHHhcccccCCC---CEEEEECCCCCCHHHHHHHHH
Confidence 355667777788 899999999999999994433
No 337
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.21 E-value=0.00015 Score=46.89 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy6968 27 LGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 27 v~lvG~~g~GKtsl~~r~~~~ 47 (93)
++++|++|+|||+|+ +.+.+
T Consensus 52 ~ll~G~~G~GKTtl~-~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA-RAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHH
Confidence 899999999999999 54443
No 338
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.20 E-value=0.00012 Score=55.87 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.7
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHH
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALV 41 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~ 41 (93)
..++++++.+..| ..++|+|++|+|||||+
T Consensus 598 ~~Lk~Vsl~I~~G---eiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLG---VFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESS---SEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCC---cEEEEEccCCCChhhhH
Confidence 4578999999999 99999999999999997
No 339
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.20 E-value=0.00022 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..++++|++|+||||++ +.+.+
T Consensus 21 ~~i~i~G~~GsGKSTl~-~~L~~ 42 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYL-NHFEK 42 (230)
T ss_dssp EEEEEECSTTSCHHHHH-HTTGG
T ss_pred eEEEEECCCCCCHHHHH-HHHHh
Confidence 88999999999999999 55544
No 340
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.20 E-value=0.00027 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+|+||||++..+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999965543
No 341
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.19 E-value=0.00044 Score=52.97 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=28.0
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.+.+++++...++ ..++++|++|+||||++ |.+
T Consensus 650 ~v~ndisl~~~~g---~i~~ItGpNGsGKSTlL-r~i 682 (934)
T 3thx_A 650 FIPNDVYFEKDKQ---MFHIITGPNMGGKSTYI-RQT 682 (934)
T ss_dssp CCCEEEEEETTTB---CEEEEECCTTSSHHHHH-HHH
T ss_pred eecccceeecCCC---eEEEEECCCCCCHHHHH-HHH
Confidence 3567888888877 78999999999999999 555
No 342
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.19 E-value=0.00037 Score=42.46 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|.+|+||||+...+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999965554
No 343
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.19 E-value=0.00022 Score=54.54 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=28.3
Q ss_pred cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHH
Q psy6968 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHR 43 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r 43 (93)
..+.+++++.+.++ ..++++|++|+||||++..
T Consensus 660 ~~V~ndvsl~~~~g---~i~~ItGPNGaGKSTlLr~ 692 (918)
T 3thx_B 660 QYVPNNTDLSEDSE---RVMIITGPNMGGKSSYIKQ 692 (918)
T ss_dssp SSCCEEEEECTTSC---CEEEEESCCCHHHHHHHHH
T ss_pred ceecccccccCCCC---eEEEEECCCCCchHHHHHH
Confidence 45678899988888 8899999999999999943
No 344
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.16 E-value=0.00032 Score=42.10 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.2
Q ss_pred eeEEEECCCCCCHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~ 44 (93)
..++++|++||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999999555
No 345
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.16 E-value=2.8e-05 Score=53.56 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=19.9
Q ss_pred EECC----eEEEEEEEecCCCCCCCCCCCCC
Q psy6968 65 VIDG----HSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 65 ~~~g----~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
.+++ +.+.+++|||+||++|+.+++..
T Consensus 173 ~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y 203 (354)
T 2xtz_A 173 SPVGENKKSGEVYRLFDVGGQRNERRKWIHL 203 (354)
T ss_dssp CCCCE------EEEEEEECCSTTGGGGTGGG
T ss_pred EeccCccccceeeEEEECCCchhhhHHHHHH
Confidence 3566 67999999999999999887643
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.15 E-value=0.0003 Score=43.89 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=18.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++++|.+||||||++..+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999954443
No 347
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.15 E-value=0.00024 Score=53.83 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=28.1
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHH
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVH 42 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~ 42 (93)
.++++++.+..| ..++|+|.+|+|||||+.
T Consensus 512 ~L~~vsl~i~~G---eiv~I~G~nGSGKSTLl~ 541 (842)
T 2vf7_A 512 NLDNLDVRFPLG---VMTSVTGVSGSGKSTLVS 541 (842)
T ss_dssp TEEEEEEEEESS---SEEEEECCTTSSHHHHCC
T ss_pred ccccceEEEcCC---CEEEEEcCCCcCHHHHHH
Confidence 589999999999 999999999999999994
No 348
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.14 E-value=0.0001 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
-.++++|.+|+||||+++.++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 45789999999999999666653
No 349
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.14 E-value=0.00042 Score=42.61 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|.+|+||||++..+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999965543
No 350
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.13 E-value=0.00049 Score=44.35 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|.+||||||++.++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999999965544
No 351
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.12 E-value=0.0005 Score=42.70 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|..|+||||++..+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999955544
No 352
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.12 E-value=0.00017 Score=55.53 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=28.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHH
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHR 43 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r 43 (93)
..++++++.+..| ..++|+|.+|+|||||+.-
T Consensus 656 ~~Lk~Vsl~I~~G---eivaI~G~nGSGKSTLl~~ 687 (993)
T 2ygr_A 656 HNLRGIDVSFPLG---VLTSVTGVSGSGKSTLVND 687 (993)
T ss_dssp TTCCSEEEEEESS---SEEEEECSTTSSHHHHHTT
T ss_pred ccccCceEEECCC---CEEEEEcCCCCCHHHHHHH
Confidence 3578999999999 9999999999999999954
No 353
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.11 E-value=0.00022 Score=46.85 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy6968 27 LGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 27 v~lvG~~g~GKtsl~~r~~~~ 47 (93)
++++|++|+|||+|+ +.+.+
T Consensus 76 vll~Gp~GtGKTtl~-~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA-RAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHH-HHHHH
T ss_pred EEEECCCcChHHHHH-HHHHH
Confidence 899999999999999 55443
No 354
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.10 E-value=0.00046 Score=42.26 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=18.1
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|.+||||||++..+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999996544
No 355
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.10 E-value=0.00066 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
.+++++|.+|+|||||++.++..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999888764
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.10 E-value=0.00046 Score=43.29 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++|+||||++..+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999995444
No 357
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.00042 Score=41.90 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+|||+++..++.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999965554
No 358
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.08 E-value=0.00045 Score=42.73 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=17.7
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|.+||||||++..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999965544
No 359
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.08 E-value=0.00052 Score=46.71 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=19.3
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..+.++++|++||||||++ +.+.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~-~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTS-RVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCEEEEEECCCCCCHHHHH-HHHHH
Confidence 3478999999999999999 44443
No 360
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.08 E-value=0.00062 Score=42.35 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|.+|+||||++..+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999965543
No 361
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.07 E-value=0.00044 Score=47.54 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=21.3
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHH
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHR 43 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r 43 (93)
.+.++.+..+ + .+++|++|+|||||+.-
T Consensus 15 ~~~~i~~~~g---~-~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 15 KNVDIEFQSG---I-TVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEEECCSE---E-EEEECCTTSSHHHHHHH
T ss_pred cceEEecCCC---e-EEEECCCCCCHHHHHHH
Confidence 4556666655 5 55899999999999853
No 362
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.06 E-value=0.0005 Score=42.19 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+||||||+...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999965543
No 363
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.04 E-value=0.00052 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=19.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++|+||||++. .+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~-~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIA-SMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHhh
Confidence 689999999999999994 44443
No 364
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.04 E-value=0.00043 Score=45.48 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.1
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
+.++ ..++++|++|+|||||+..++.
T Consensus 27 l~~G---~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAG---TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETT---SEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCC---CEEEEEcCCCCCHHHHHHHHHH
Confidence 4566 7899999999999999977764
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00063 Score=41.72 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|.+|+||||++..+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999996554
No 366
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.02 E-value=0.00051 Score=42.78 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+|+||||++.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999977765
No 367
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.02 E-value=3.1e-05 Score=50.36 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=17.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
.++|+|++|||||||+ +.+.+.
T Consensus 29 ~~~i~GpnGsGKSTll-~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTM-AAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhcc
Confidence 5678999999999999 555443
No 368
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.02 E-value=0.00055 Score=43.04 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
++++.|.+|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999965543
No 369
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.00048 Score=42.17 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=17.7
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|.+|+||||++..+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999965543
No 370
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.01 E-value=0.00033 Score=47.34 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++|+|||||+ +.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa-~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA-HIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHH-HHHHHH
T ss_pred CeEEEECCCCCcHHHHH-HHHHHH
Confidence 46899999999999999 555443
No 371
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.01 E-value=0.00051 Score=43.66 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=21.7
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
+.++ .-++++|++|+|||+|+.+++.
T Consensus 20 l~~G---~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPER---NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETT---CEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCC---cEEEEECCCCCCHHHHHHHHHH
Confidence 4556 7889999999999999877764
No 372
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.01 E-value=0.00047 Score=51.76 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=25.1
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
.+++++++. + ..++++|++|+||||++ |.+.+
T Consensus 567 ~vl~disl~---g---~i~~I~GpNGsGKSTlL-r~iag 598 (765)
T 1ewq_A 567 FVPNDLEMA---H---ELVLITGPNMAGKSTFL-RQTAL 598 (765)
T ss_dssp CCCEEEEES---S---CEEEEESCSSSSHHHHH-HHHHH
T ss_pred eEeeeccCC---C---cEEEEECCCCCChHHHH-HHHHh
Confidence 446777776 5 78999999999999999 54443
No 373
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.01 E-value=0.00082 Score=41.39 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.2
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|.+|+||||++..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 789999999999999995543
No 374
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.00 E-value=0.00059 Score=42.96 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
++++.|++|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999965544
No 375
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.00 E-value=0.00024 Score=48.37 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=24.3
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
++.++...++ ..++++|.+|+||||++..++
T Consensus 47 ~~l~~~~~~~---~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 47 DAIMPYCGNT---LRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp HHHGGGCSCS---EEEEEEECTTSCHHHHHHHHH
T ss_pred HhCCcccCCC---EEEEEEcCCCCCHHHHHHHHH
Confidence 3444545555 899999999999999997765
No 376
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.97 E-value=0.00089 Score=41.71 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=19.5
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
....++++|.+|+||||++..+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 336899999999999999955543
No 377
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.97 E-value=0.00077 Score=45.09 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=18.1
Q ss_pred eeeEEEECCCCCCHHHHHHHH
Q psy6968 24 DLRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~ 44 (93)
...++|+|++||||||++..+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 488999999999999999443
No 378
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.96 E-value=0.00019 Score=55.08 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.9
Q ss_pred ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHH
Q psy6968 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHR 43 (93)
Q Consensus 9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r 43 (93)
..++++++.+..| ..++|+|.+|+|||||+.-
T Consensus 638 ~~Lk~Vsl~I~~G---eiv~I~G~nGSGKSTLl~~ 669 (972)
T 2r6f_A 638 HNLKNVSVKIPLG---TFVAVTGVSGSGKSTLVNE 669 (972)
T ss_dssp SSCCSEEEEEESS---SEEECCBCTTSSHHHHHTT
T ss_pred cccccceEEEcCC---CEEEEEcCCCCCHHHHHHH
Confidence 3578999999999 9999999999999999954
No 379
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.96 E-value=0.00063 Score=41.53 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.1
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q psy6968 26 RLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~ 45 (93)
.++++|.+|+||||+...+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999995443
No 380
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.96 E-value=0.00089 Score=40.98 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=17.8
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|.+|+||||++..+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 688999999999999994443
No 381
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.92 E-value=0.00067 Score=44.27 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.++++|++|+||||+...++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999966653
No 382
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.91 E-value=0.001 Score=40.68 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|.+|+||||++..+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999965543
No 383
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.91 E-value=0.00089 Score=45.38 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=23.3
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.++++...++ ..++++|++|+||||++..++
T Consensus 96 ~~l~~~~~~~---~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 96 YRIDFKENRL---NIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CCCCCCTTSC---EEEEEESSTTSSHHHHHHHHH
T ss_pred cCccccCCCC---eEEEEECCCCCCHHHHHHHHH
Confidence 3455555555 789999999999999996554
No 384
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.90 E-value=0.00095 Score=51.56 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=26.7
Q ss_pred ceeeeceeeeCC-------CCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 9 TFVTSHEFTLAR-------DVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 9 ~~~~~~~~~~~~-------~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.+++++++...+ + ..++|+|++|+||||++ |.+
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g---~i~~ItGpNgsGKSTlL-r~i 809 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKA---YCVLVTGPNMGGKSTLM-RQA 809 (1022)
T ss_dssp CCCEEEEESCCCSCC---CC---CEEEEECCTTSSHHHHH-HHH
T ss_pred eEeeeeeeccccccccCCCC---cEEEEECCCCCChHHHH-HHH
Confidence 456888887665 5 78999999999999999 544
No 385
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.89 E-value=0.00091 Score=44.50 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|++|+||||++.++..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999966654
No 386
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.89 E-value=0.00082 Score=41.13 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.1
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|.+|+||||++..+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 578999999999999995554
No 387
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.89 E-value=0.00085 Score=41.87 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|.+|+||||++..+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999996554
No 388
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.88 E-value=0.00078 Score=41.49 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.2
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|.+||||||++..+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999995554
No 389
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.88 E-value=0.00055 Score=41.39 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+|||+++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999965544
No 390
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.88 E-value=0.00094 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=17.9
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
-.++++|++|+||||++.-++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999994443
No 391
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.88 E-value=0.00078 Score=46.43 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=22.7
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHH
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~ 44 (93)
+.+.++.+.++ ..+++|++|+||||++.-.
T Consensus 17 ~~~~~~~~~~g----~~~i~G~nG~GKttll~ai 46 (359)
T 2o5v_A 17 LAPGTLNFPEG----VTGIYGENGAGKTNLLEAA 46 (359)
T ss_dssp CCSEEEECCSE----EEEEECCTTSSHHHHHHHH
T ss_pred eeeeEEEEcCC----eEEEECCCCCChhHHHHHH
Confidence 35566666544 6889999999999999543
No 392
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.87 E-value=0.00095 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
.+++++|.+|+|||||++.++..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 58999999999999999888764
No 393
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.87 E-value=0.0011 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+||||++.++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999966653
No 394
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.87 E-value=0.0008 Score=42.34 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+|||+++..+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999965543
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.87 E-value=0.00082 Score=40.61 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.5
Q ss_pred eEEEECCCCCCHHHHHHH
Q psy6968 26 RLGIVGSLASGKSALVHR 43 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r 43 (93)
-.+++|++|+|||+++.-
T Consensus 25 ~~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 568899999999999853
No 396
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.85 E-value=0.0012 Score=44.60 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|++|+||||++..++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 6889999999999999965553
No 397
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.85 E-value=0.00058 Score=41.30 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=18.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++|+|||+|+ +.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~-~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL-QAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHH
Confidence 67899999999999999 555443
No 398
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.84 E-value=0.0011 Score=41.89 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+|+||||++..+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999955543
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.83 E-value=0.00098 Score=41.57 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|.+|+||||++..+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 689999999999999995554
No 400
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.82 E-value=0.0011 Score=45.60 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCCCCeeeEEEECCCCCCHHHHHHHH
Q psy6968 19 ARDVPDLRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 19 ~~~~~~~kv~lvG~~g~GKtsl~~r~ 44 (93)
..|....|++++|..++||||++.++
T Consensus 4 ~~~~~~~k~lllG~~~sGKsT~~kq~ 29 (354)
T 2xtz_A 4 GSGIHIRKLLLLGAGESGKSTIFKQI 29 (354)
T ss_dssp CCCCEEEEEEEECSTTSSHHHHHHHH
T ss_pred cCCCCceeEEEECCCCCcHHHHHHHH
Confidence 45666789999999999999999765
No 401
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.81 E-value=0.00094 Score=41.63 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999966554
No 402
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.81 E-value=0.00091 Score=45.73 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=23.6
Q ss_pred eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..+.++ ..+.++|++|+|||||+..++..
T Consensus 126 ggi~~G---~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 126 GGIETQ---AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEESS---EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCC---eEEEEECCCCCCHHHHHHHHHHH
Confidence 345667 78999999999999999776653
No 403
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.78 E-value=0.001 Score=42.30 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|.+||||||++.++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999996554
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.77 E-value=0.0011 Score=42.17 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.++++|++||||+|.+.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999966554
No 405
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.77 E-value=0.0013 Score=40.73 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|..||||||+...+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999955543
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.76 E-value=0.0015 Score=41.13 Aligned_cols=20 Identities=40% Similarity=0.492 Sum_probs=17.5
Q ss_pred eeEEEECCCCCCHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~ 44 (93)
..++++|.+|+||||++..+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 78999999999999999543
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.75 E-value=0.0016 Score=41.00 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=18.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|.+||||||++..+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999955443
No 408
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.75 E-value=0.0011 Score=40.85 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=17.9
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999966554
No 409
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.75 E-value=0.0011 Score=42.80 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.5
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++|+|||+++..+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 468999999999999994443
No 410
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.74 E-value=0.0012 Score=40.67 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|..||||||++.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999966544
No 411
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.74 E-value=0.0014 Score=44.67 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.4
Q ss_pred eeeEEEECCCCCCHHHHHHHHHh
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
...++++|.+|+|||||+.+++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999988764
No 412
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.73 E-value=0.00097 Score=42.23 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+||||||++.++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999965543
No 413
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.73 E-value=0.0011 Score=41.84 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
++++.|.+|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999965543
No 414
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.73 E-value=0.0014 Score=39.43 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=17.5
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
++++.|.+|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999955443
No 415
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.72 E-value=0.0014 Score=45.14 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.8
Q ss_pred eeeEEEECCCCCCHHHHHHHH
Q psy6968 24 DLRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~ 44 (93)
..|++++|.+|+||||++.++
T Consensus 33 ~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHH
Confidence 489999999999999998654
No 416
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.72 E-value=0.0013 Score=40.91 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+|+||||++.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999977764
No 417
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.71 E-value=0.0017 Score=42.09 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=19.4
Q ss_pred CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.++.++.++-. .......|+|.|.+|+||||+...+..
T Consensus 7 ~~~~~~~~~~~--~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 7 SEQTLQNHQQP--NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHHHhhhc--cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34455444432 222337899999999999999955443
No 418
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.70 E-value=0.0014 Score=39.59 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|.+|+||||++..+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999955443
No 419
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.69 E-value=0.0013 Score=40.59 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|.+|+||||++..+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999955443
No 420
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.69 E-value=0.0016 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
-.++++|++|+||||++.-++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 6789999999999999955443
No 421
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.68 E-value=0.0023 Score=39.74 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|.+|+||||++.++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999996555
No 422
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.67 E-value=0.0019 Score=42.16 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+|+||||++..+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999965543
No 423
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.66 E-value=0.001 Score=43.17 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+|+||||++..+..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999955443
No 424
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.66 E-value=0.0014 Score=40.14 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=18.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+|+||||+...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999955443
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.66 E-value=0.00091 Score=40.78 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=14.1
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|.+|+||||++..+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999995554
No 426
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.66 E-value=0.0022 Score=41.24 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.0
Q ss_pred CCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968 20 RDVPDLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 20 ~~~~~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.+.....++++|..||||||++.+++
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHH
Confidence 34445889999999999999998887
No 427
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.65 E-value=0.0004 Score=43.43 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.1
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q psy6968 26 RLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~ 45 (93)
.++++|.+|+||||++..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999995554
No 428
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.65 E-value=0.0018 Score=40.95 Aligned_cols=17 Identities=41% Similarity=0.454 Sum_probs=15.1
Q ss_pred eEEEECCCCCCHHHHHH
Q psy6968 26 RLGIVGSLASGKSALVH 42 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~ 42 (93)
-.+++|++|+||||++.
T Consensus 25 ~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 56789999999999985
No 429
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.65 E-value=0.0017 Score=38.66 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=18.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..+++.|++|+|||+++ +.+..
T Consensus 25 ~~vll~G~~GtGKt~lA-~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGA-RYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHH-HHHHH
T ss_pred CCEEEECCCCCCHHHHH-HHHHH
Confidence 67999999999999999 66554
No 430
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.0016 Score=41.48 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.6
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|.+|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999965543
No 431
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.63 E-value=0.0017 Score=39.73 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=17.5
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|..|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999955543
No 432
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.63 E-value=0.0017 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.8
Q ss_pred eeeEEEECCCCCCHHHHHHHHHhC
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..+|+++|.+|+||||+..++...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999777654
No 433
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.62 E-value=0.0016 Score=40.46 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.1
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999954443
No 434
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.61 E-value=0.00039 Score=50.61 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=27.2
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF 49 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f 49 (93)
.++.+++.+..+ ..++++|++|+||||++ +.+.+..
T Consensus 49 ~l~~l~~~i~~g---~~vll~Gp~GtGKTtla-r~ia~~l 84 (604)
T 3k1j_A 49 AVEVIKTAANQK---RHVLLIGEPGTGKSMLG-QAMAELL 84 (604)
T ss_dssp HHHHHHHHHHTT---CCEEEECCTTSSHHHHH-HHHHHTS
T ss_pred hHhhccccccCC---CEEEEEeCCCCCHHHHH-HHHhccC
Confidence 345556666677 78999999999999999 5555543
No 435
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.00047 Score=46.47 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=23.3
Q ss_pred eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
++.....+..+.... +++.|++|+||||++..++.
T Consensus 34 ~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp HHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHH
Confidence 333444445553323 89999999999999955543
No 436
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.59 E-value=0.0021 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++++|.+|+||||++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999966654
No 437
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.58 E-value=0.0015 Score=45.66 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.9
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++|+|++|+|||||+..++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 689999999999999997665
No 438
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.57 E-value=0.0013 Score=44.19 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred eceeeeCCCCCeeeEEEECCCCCCHHHHHHHH
Q psy6968 13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~ 44 (93)
..++.+.++ ..+++|++|+|||+|+.-+
T Consensus 17 ~~~l~~~~g----~~~i~G~NGsGKS~ll~ai 44 (322)
T 1e69_A 17 PSLIGFSDR----VTAIVGPNGSGKSNIIDAI 44 (322)
T ss_dssp CEEEECCSS----EEEEECCTTTCSTHHHHHH
T ss_pred CeEEecCCC----cEEEECCCCCcHHHHHHHH
Confidence 345555555 6789999999999999443
No 439
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.57 E-value=0.0019 Score=42.01 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|++|+||||++..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999995544
No 440
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.57 E-value=0.002 Score=44.94 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.1
Q ss_pred eeEEEECCCCCCHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~ 44 (93)
...+++|++|+|||||+.-+
T Consensus 27 ~~~~i~G~nG~GKstll~ai 46 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAI 46 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57889999999999999533
No 441
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.55 E-value=0.0018 Score=43.35 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.2
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++|+||||++..++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 688999999999999996554
No 442
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.53 E-value=0.0018 Score=42.53 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+|||+++..+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5789999999999999954443
No 443
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0016 Score=43.71 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+|||+++..++.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999965554
No 444
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.52 E-value=0.0064 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCCHHHHHHHHHh
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
-..|.|+|+..+|||+|+++++.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhh
Confidence 36788999999999999998875
No 445
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.51 E-value=0.0022 Score=43.42 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.4
Q ss_pred eEEEECCCCCCHHHHHHH
Q psy6968 26 RLGIVGSLASGKSALVHR 43 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r 43 (93)
-.+++|++|+|||+++.-
T Consensus 25 ~~~i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDA 42 (339)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 447999999999999953
No 446
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.51 E-value=0.002 Score=42.76 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
--++|.|+.|+|||+|+..+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 46889999999999999777653
No 447
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.002 Score=43.18 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q psy6968 27 LGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 27 v~lvG~~g~GKtsl~~r~~~ 46 (93)
+++.|++|+||||++..++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999954444
No 448
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.50 E-value=0.0021 Score=41.23 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.7
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|++|+|||+++..+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568999999999999995544
No 449
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.50 E-value=0.0021 Score=41.40 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=16.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
-++++|++||||+|.+.+++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999966554
No 450
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.49 E-value=0.002 Score=42.02 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+|||+++..+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5699999999999999955443
No 451
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.49 E-value=0.0019 Score=46.26 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=22.6
Q ss_pred eeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 17 TLARDVPDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+.+| ..++++|++|+|||||+..++.
T Consensus 277 ~i~~G---~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 277 GFFKD---SIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SEESS---CEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCC---cEEEEEeCCCCCHHHHHHHHHH
Confidence 45666 7899999999999999976664
No 452
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.48 E-value=0.002 Score=40.77 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.0
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|.+|+||||++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999995544
No 453
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.46 E-value=0.003 Score=40.45 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|.+|+||||+...+.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999995444
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.45 E-value=0.0026 Score=40.66 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.2
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|.+|+||||++..+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999995554
No 455
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.45 E-value=0.0013 Score=47.76 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.3
Q ss_pred eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
+.++ ..++++|.+|||||||+ +.+.+.
T Consensus 366 ~~~G---~iI~LiG~sGSGKSTLa-r~La~~ 392 (552)
T 3cr8_A 366 ERQG---FTVFFTGLSGAGKSTLA-RALAAR 392 (552)
T ss_dssp GGSC---EEEEEEESSCHHHHHHH-HHHHHH
T ss_pred cccc---eEEEEECCCCChHHHHH-HHHHHh
Confidence 4456 88999999999999999 555443
No 456
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.43 E-value=0.0023 Score=43.16 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=18.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|++|+|||+++..+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999965554
No 457
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.41 E-value=0.0037 Score=41.09 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.6
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|++|+|||+++..+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 579999999999999994443
No 458
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.41 E-value=0.0028 Score=38.25 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=17.6
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
-.+++.|..||||||+...+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468899999999999995544
No 459
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.39 E-value=0.0025 Score=42.36 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.7
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|++|+|||+++..+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHH
Confidence 579999999999999994443
No 460
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.39 E-value=0.0024 Score=42.58 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.2
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
-.+++.|++|+|||+++..+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999999954443
No 461
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.38 E-value=0.0021 Score=42.61 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
.++|.|+.|+|||+|+..+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999877653
No 462
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.37 E-value=0.0034 Score=39.83 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.-+++.|++|+|||+|+..++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6889999999999999988753
No 463
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.36 E-value=0.0034 Score=41.32 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=16.9
Q ss_pred eeEEEECCCCCCHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHR 43 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r 43 (93)
..+++.|++|+|||+++..
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5799999999999999953
No 464
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.36 E-value=0.0036 Score=41.40 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.7
Q ss_pred eeeEEEECCCCCCHHHHHHHHH
Q psy6968 24 DLRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~ 45 (93)
...|+|.|.+||||||++..+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999995544
No 465
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.35 E-value=0.0025 Score=40.91 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++|+|||+++..++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 679999999999999998777643
No 466
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.33 E-value=0.002 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=19.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..++++|++|+|||+|+ +.+.+.
T Consensus 239 ~~vLL~Gp~GtGKTtLa-rala~~ 261 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIA-RAVANE 261 (806)
T ss_dssp CEEEECSCTTSSHHHHH-HHHHHT
T ss_pred CeEEEECcCCCCHHHHH-HHHHHH
Confidence 68999999999999999 655554
No 467
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.33 E-value=0.0038 Score=41.71 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=17.7
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..++++|.+|+||||++..++
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 678889999999999995444
No 468
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.32 E-value=0.003 Score=41.35 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=17.8
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|++|+|||+++..+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999995444
No 469
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.31 E-value=0.0042 Score=42.38 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
.-++|+|++|||||+|+.+++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45789999999999999777654
No 470
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.31 E-value=0.0033 Score=43.19 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=19.0
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..++|+|+.|+|||+|...++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999666543
No 471
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.29 E-value=0.0045 Score=42.13 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=19.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
.-++|+|+.|+|||+|+.+++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46789999999999999777643
No 472
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.29 E-value=0.0042 Score=42.34 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++|+|++|+||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999966554
No 473
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.27 E-value=0.0015 Score=46.87 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=17.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy6968 26 RLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
-++++|++|+|||+|+ +.+.+
T Consensus 66 GvLL~GppGtGKTtLa-raIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA-RAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHH
Confidence 3899999999999999 55544
No 474
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.26 E-value=0.013 Score=40.38 Aligned_cols=27 Identities=11% Similarity=-0.027 Sum_probs=14.6
Q ss_pred EEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 63 EVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 63 ~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
.+.+++ +.+++||++||++++.++...
T Consensus 195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~ 221 (362)
T 1zcb_A 195 DFEIKN--VPFKMVDVGGQRSERKRWFEC 221 (362)
T ss_dssp EEEETT--EEEEEEEECC-------CTTS
T ss_pred EeeeCC--eEEEEEeccchhhhhhhHHHH
Confidence 445554 789999999999999887653
No 475
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.26 E-value=0.0048 Score=40.12 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=18.9
Q ss_pred eeeEEEECCCCCCHHHHHHHHHh
Q psy6968 24 DLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 24 ~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
...+++.|++|+|||+++..+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 36799999999999999955443
No 476
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.26 E-value=0.0038 Score=42.86 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.4
Q ss_pred CCeeeEEEECCCCCCHHHHHHHH
Q psy6968 22 VPDLRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 22 ~~~~kv~lvG~~g~GKtsl~~r~ 44 (93)
...+|++++|..++||||++.++
T Consensus 30 ~~~~klLlLG~geSGKST~~KQm 52 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQM 52 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHH
Confidence 34699999999999999998754
No 477
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.25 E-value=0.0015 Score=38.90 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTGA 48 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~~ 48 (93)
..+++.|++|+|||+++ +.+...
T Consensus 28 ~~vll~G~~GtGKt~lA-~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVA-RYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHH-GGGCCT
T ss_pred CcEEEECCCCccHHHHH-HHHHHh
Confidence 57999999999999999 776654
No 478
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.25 E-value=0.0021 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..++++|++|+|||+++ +.+.+
T Consensus 109 ~~vll~Gp~GtGKTtla-r~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLA-KSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHH
Confidence 57899999999999999 55543
No 479
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.21 E-value=0.0033 Score=44.31 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=24.9
Q ss_pred eceeeeCCCCCeeeEEEECCCCCCHHHHHHHH
Q psy6968 13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRF 44 (93)
Q Consensus 13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~ 44 (93)
+..+++.+| -+++++|++|+|||+|+..+
T Consensus 166 D~~~pi~rG---Qr~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 166 DLASPIGRG---QRGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp HHHSCCBTT---CEEEEECCSSSSHHHHHHHH
T ss_pred eeeeeecCC---cEEEEecCCCCChhHHHHHH
Confidence 567778888 89999999999999999543
No 480
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.20 E-value=0.0029 Score=42.50 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=18.7
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
-.+++.|++|+|||+++..+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999965554
No 481
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.0037 Score=41.73 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHh
Q psy6968 27 LGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 27 v~lvG~~g~GKtsl~~r~~~ 46 (93)
+++.|++|+|||+++..+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999955443
No 482
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.18 E-value=0.0033 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.9
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.-++++|.+|+||||++.++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6788999999999999966554
No 483
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.18 E-value=0.0033 Score=41.77 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=16.9
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
.-+++.|++|+|||+++..++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467778999999999995444
No 484
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.17 E-value=0.004 Score=42.93 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.-+.|.|++|+|||||+..++.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6788999999999999977764
No 485
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.15 E-value=0.0039 Score=42.77 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=18.8
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..++|+|++|+|||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4688999999999999976654
No 486
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.15 E-value=0.0029 Score=44.27 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968 55 PEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP 92 (93)
Q Consensus 55 ~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~ 92 (93)
+|.|.....+.+++ +.+++|||+||++|+.+++..+
T Consensus 203 ~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf 238 (402)
T 1azs_C 203 LTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCF 238 (402)
T ss_dssp CCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGT
T ss_pred ceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhc
No 487
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.14 E-value=0.0049 Score=38.16 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=17.5
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy6968 26 RLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 26 kv~lvG~~g~GKtsl~~r~~~ 46 (93)
.+++.|.+|+||||+...+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999954433
No 488
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.11 E-value=0.0042 Score=41.82 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.5
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
--+++.|++|+|||+++..+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 5689999999999999955554
No 489
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.10 E-value=0.0036 Score=42.14 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999955543
No 490
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.09 E-value=0.0044 Score=41.37 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.3
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
..+++.|++|+|||+++..+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999955543
No 491
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.09 E-value=0.0016 Score=45.05 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=22.4
Q ss_pred eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHH
Q psy6968 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVH 42 (93)
Q Consensus 10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~ 42 (93)
++..++..+.++. ...++++|++|+||||+..
T Consensus 11 il~~l~~~i~~g~-~~~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 11 VLQLLDNRIEDNY-RVCVILVGSPGSGKSTIAE 42 (359)
T ss_dssp HHHHHHHTTTTCS-CEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHhccCC-eeEEEEECCCCCcHHHHHH
Confidence 3444444455552 2469999999999999994
No 492
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.08 E-value=0.0071 Score=38.03 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=19.4
Q ss_pred CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968 23 PDLRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 23 ~~~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
....+++.|..||||||+...+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999955443
No 493
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.08 E-value=0.0043 Score=39.06 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
.-+++.|++|+||||++..++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 68999999999999999888764
No 494
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.05 E-value=0.0054 Score=39.68 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=18.4
Q ss_pred eeEEEECCCCCCHHHHHHHHHhC
Q psy6968 25 LRLGIVGSLASGKSALVHRFMTG 47 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~~ 47 (93)
..+++.|++|+|||+++ +.+..
T Consensus 30 ~~vll~G~~GtGKt~la-~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIA-SRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHH-HHHHH
T ss_pred CCEEEECCCCCcHHHHH-HHHHH
Confidence 67899999999999999 55443
No 495
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.04 E-value=0.0047 Score=42.30 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=20.2
Q ss_pred eeceeeeCCCCCeeeEEEECCCCCCHHHHHHH
Q psy6968 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHR 43 (93)
Q Consensus 12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r 43 (93)
.+..+.+.++ -.+++|++|+|||+++.-
T Consensus 17 ~~~~i~f~~g----l~vi~G~NGaGKT~ileA 44 (371)
T 3auy_A 17 VNSRIKFEKG----IVAIIGENGSGKSSIFEA 44 (371)
T ss_dssp EEEEEECCSE----EEEEEECTTSSHHHHHHH
T ss_pred cceEEecCCC----eEEEECCCCCCHHHHHHH
Confidence 3344444444 568899999999999863
No 496
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.03 E-value=0.0042 Score=41.92 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=18.6
Q ss_pred eeEEEECCCCCCHHHHHHHHHh
Q psy6968 25 LRLGIVGSLASGKSALVHRFMT 46 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~~ 46 (93)
-.+++.|++|+|||+++..+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999965554
No 497
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.03 E-value=0.00022 Score=47.79 Aligned_cols=48 Identities=13% Similarity=-0.036 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCC-CCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968 39 ALVHRFMTGAFL-QEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91 (93)
Q Consensus 39 sl~~r~~~~~f~-~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~ 91 (93)
+|+.+|+.+.|. ++|.||.++ +...+..++ ++.+||+ ||+|+.+++.+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~ 81 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPH 81 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTT
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccc
Confidence 577799999998 789999654 443332333 6889999 99999887653
No 498
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.03 E-value=0.0049 Score=42.32 Aligned_cols=26 Identities=8% Similarity=-0.071 Sum_probs=20.4
Q ss_pred EEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968 63 EVVIDGHSHLLLIRDEGVPPELQPPNPS 90 (93)
Q Consensus 63 ~~~~~g~~i~~~i~d~~g~~~~~~~~~~ 90 (93)
.+.++ .+.+++||++||++++.+++.
T Consensus 187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~ 212 (353)
T 1cip_A 187 HFTFK--DLHFKMFDVGGQRSERKKWIH 212 (353)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGG
T ss_pred EEeeC--CeeEEEEeCCCchhhhHHHHH
Confidence 44554 478999999999999887754
No 499
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.03 E-value=0.0041 Score=40.25 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=15.3
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..|++.|..|+||||++.++.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CEEEEECCC---CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999996544
No 500
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.02 E-value=0.0048 Score=41.29 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.9
Q ss_pred eeEEEECCCCCCHHHHHHHHH
Q psy6968 25 LRLGIVGSLASGKSALVHRFM 45 (93)
Q Consensus 25 ~kv~lvG~~g~GKtsl~~r~~ 45 (93)
..+++.|++|+|||+++..+.
T Consensus 52 ~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 579999999999999995444
Done!