RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6968
(93 letters)
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 96.5 bits (241), Expect = 4e-27
Identities = 50/78 (64%), Positives = 63/78 (80%)
Query: 8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
+S L P+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct: 4 HHHHSSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 63
Query: 68 GHSHLLLIRDEGVPPELQ 85
G S+LLLIRDEG PPELQ
Sbjct: 64 GQSYLLLIRDEGGPPELQ 81
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 80.8 bits (200), Expect = 5e-21
Identities = 31/66 (46%), Positives = 50/66 (75%)
Query: 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEG 79
R +P+LRLG++G SGKS+L+HRF+TG++ E E ++KKE+++DG +HL+LIR+E
Sbjct: 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 62
Query: 80 VPPELQ 85
P+ +
Sbjct: 63 GAPDAK 68
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 47.2 bits (113), Expect = 4e-08
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 4 SSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKK 62
SS D + F +++L I G GKSALV RF+T F+ E P ++
Sbjct: 8 SSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH 67
Query: 63 EVVIDGHSHLLLIRD 77
+ ID + I D
Sbjct: 68 QATIDDEVVSMEILD 82
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 46.0 bits (110), Expect = 9e-08
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRD 77
++ L I+G +GKSAL +F+T F+ E P + E +D L + D
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMD 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 44.0 bits (105), Expect = 5e-07
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLI 75
+ + +L +VG+ GKSAL + + F+ E+S ++K+VVIDG + LL I
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-----YRKQVVIDGETCLLDI 55
Query: 76 RD 77
D
Sbjct: 56 LD 57
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 43.7 bits (104), Expect = 6e-07
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+ +L +VG+ GKSAL + + F+ E P ++K+VVIDG + LL I D
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 43.4 bits (103), Expect = 1e-06
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRD 77
D R+ + G+ GKS+LV RF+ G F P +++ + D L I D
Sbjct: 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITD 62
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 42.9 bits (102), Expect = 1e-06
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
R+ + G+ GKS+LV RF+ G F + E++ +++ + D L I D
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-----YRQVISCDKSICTLQITD 57
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 42.6 bits (101), Expect = 2e-06
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
+ +L +VG+ GKSAL + + F+ E+S ++K+VVIDG + LL I D
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDS-----YRKQVVIDGETCLLDILD 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 42.5 bits (101), Expect = 2e-06
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
+L ++GS GKSAL +F+ G F++ E+S ++K+V +D +L I D
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-----YRKQVEVDCQQCMLEILD 57
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 42.5 bits (101), Expect = 2e-06
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
++ I+G + GKS+L +F+ G F+ E + F K + ++G + L + D
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-----FTKLITVNGQEYHLQLVD 60
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 42.1 bits (100), Expect = 2e-06
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
++ +VGS GKSAL +FM F++ +S ++K+VV+DG + I D
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-----YRKKVVLDGEEVQIDILD 58
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK-KEVVIDGHSHLLLIRD 77
R+ ++G GK++L F G + + +DG L++ D
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVD 58
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 42.6 bits (101), Expect = 2e-06
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSHLLLIRD 77
I+G GK++L H+F+ G F + + + K V + L + D
Sbjct: 29 ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 42.2 bits (100), Expect = 3e-06
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 19 ARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHL 72
+ ++P +L +VG GKSAL +F F+ E+S + K ID +
Sbjct: 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDS-----YLKHTEIDNQWAI 67
Query: 73 LLIRD 77
L + D
Sbjct: 68 LDVLD 72
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 41.8 bits (99), Expect = 4e-06
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
++ +VGS GKSAL +FM F++ +S ++K+VV+DG + I D
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-----YRKKVVLDGEEVQIDILD 72
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 41.7 bits (99), Expect = 4e-06
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK-KEVVIDGHSHLLLIRD 77
+L +VG GKSAL +F+ F+ + P K +DG L I D
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILD 63
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 41.8 bits (99), Expect = 4e-06
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRD 77
++ +VGS GKSAL +FM F+++ P ++K+VV+DG + I D
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 68
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 41.0 bits (97), Expect = 7e-06
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
++ +VG GKS L F E +++ +++D L++ D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYD 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 40.5 bits (96), Expect = 9e-06
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
++ ++GS GKSAL +F+TG F++ E+ ++KE+ +D +L I D
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-----YRKEIEVDSSPSVLEILD 57
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 40.2 bits (95), Expect = 1e-05
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRD 77
++ ++G+ GKSAL F G E+ G + + +V+DG L++ D
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYD 55
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 38.0 bits (89), Expect = 9e-05
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
++ +VG GKS L F PE +++ +++D L++ D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 36.9 bits (86), Expect = 3e-04
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEE--SPEGGRFK-KEVVIDGHSHLLLIRD 77
R+ ++G GKS L + F + G + +++DG S +++ D
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLD 62
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 36.5 bits (85), Expect = 3e-04
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 26 RLGIVGSLASGKSALVHRF--MTGAFLQEESPEGGRFK-KEVVIDGHSHLLLIRD 77
R+ ++G GKS L + F + + + G + +++DG S +++ D
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLD 93
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 35.0 bits (81), Expect = 0.001
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP---EGGRFKKEVVIDGHSHLLLIRD 77
VG A GK+ ++ + + F + P + F V +DG L + D
Sbjct: 14 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFD--NFSANVAVDGQIVNLGLWD 63
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 34.3 bits (79), Expect = 0.002
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE---GGRFK-KEVVIDG 68
IVG+ SGK+ L+ + M G K + I
Sbjct: 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRD 50
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 34.0 bits (78), Expect = 0.003
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+++ +VG GK++L+ F GAF + +P R+ + + G L I D
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWD 88
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 33.5 bits (77), Expect = 0.003
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
L++ +VG A GK+ L+ F G P F + +L + D
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWD 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 33.6 bits (77), Expect = 0.003
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
+VG A GK+ L+ F F + P + ++ +DG L + D
Sbjct: 30 VVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWD 79
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 33.6 bits (77), Expect = 0.004
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP---EGGRFKKEVVIDGHSHLLLIRD 77
+VG A GK++LV + T + E P + F V +DG L + D
Sbjct: 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN--FSAVVSVDGRPVRLQLCD 74
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 33.6 bits (77), Expect = 0.004
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
++ +VG A GK+ L+ + T AF E P + V++DG L + D
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 84
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 32.9 bits (75), Expect = 0.007
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDGHSHLLLIRDEGVPPELQP 86
++G + GKS++V R F + + G F V ++ + +E
Sbjct: 12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSI 71
Query: 87 PNPSAPY 93
+ +
Sbjct: 72 NDDNNVI 78
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 32.8 bits (75), Expect = 0.008
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 1 MKMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGR 59
+S ++V ++ +VG GK+AL+H F F + P
Sbjct: 6 HHHHHSSGLVPRGSHMDPNQNVK-CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN 64
Query: 60 FKKEVVIDGHSHLLLIRD 77
+ ID L + D
Sbjct: 65 YTASFEIDTQRIELSLWD 82
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 32.5 bits (75), Expect = 0.009
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGHSHLLLIRD 77
++G GKS+++ RF+ +F G F K V H LI D
Sbjct: 11 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 32.7 bits (74), Expect = 0.009
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGV 80
+++ ++G +GK++L+ + + F +ES G + + +
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 32.4 bits (74), Expect = 0.009
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
++ +VG A GK+ L+ + T AF E P + V++DG L + D
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 59
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 32.0 bits (73), Expect = 0.012
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP---EGGRFKKEVVIDGHSHLLLIRD 77
+VG GK+AL+H F F + P E + ID L + D
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFEN--YTASFEIDTQRIELSLWD 61
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 32.1 bits (73), Expect = 0.012
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGHSHLLLIRD 77
++G A GKS++V RF++ F + E G F + V I+ H+ I D
Sbjct: 8 LLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWD 58
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 32.1 bits (74), Expect = 0.012
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGHSHLLLIRD 77
++G A GKS+LV RF+ G F + ES G F + V +D + I D
Sbjct: 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 31.7 bits (73), Expect = 0.014
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGHSHLLLIRD 77
++G + +GKS+LV RF+ F++ ES G F + + ++ + I D
Sbjct: 17 LLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWD 67
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 31.8 bits (72), Expect = 0.018
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 3 MSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK 61
SS + +L +VG + GK+A++ + + P +
Sbjct: 7 HSSGRENLYFQGRAPQPVVA-RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT 65
Query: 62 KEVVIDGHSHLLLIRD 77
+ + L + D
Sbjct: 66 ACLETEEQRVELSLWD 81
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 31.3 bits (71), Expect = 0.021
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP---EGGRFKKEVVIDGHSHLLLIRD 77
+VG A GK+ L+ + AF +E P + + V + G +LL + D
Sbjct: 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH--YAVSVTVGGKQYLLGLYD 72
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 31.4 bits (72), Expect = 0.023
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGHSHLLLIRD 77
++G GKS++V RF+ F G F K V H LI D
Sbjct: 28 LLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 31.1 bits (71), Expect = 0.026
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGHSHLLLIRD 77
+G + GK++L+ RFM +F ++ G F K + ++ + L + D
Sbjct: 21 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 31.1 bits (71), Expect = 0.027
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDG 68
I+G GK++L+++++ F + ++ G F KEV++D
Sbjct: 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD 54
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 30.8 bits (70), Expect = 0.034
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
++ VG A GK+ L+ + + F + P F VV++G + L + D
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 30.5 bits (70), Expect = 0.034
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGHSHLLLIRD 77
++G GK++LV R+ F + + G F K++ I G L I D
Sbjct: 11 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 30.7 bits (70), Expect = 0.036
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDG 68
+VG +GK+ V R +TG F ++ + G +
Sbjct: 20 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR 61
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 30.6 bits (70), Expect = 0.038
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGG-RFK-KEVVIDG 68
I+G + GKS L+H+F F+ + G F + + + G
Sbjct: 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG 61
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 30.6 bits (70), Expect = 0.042
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGHSHLLLIRD 77
+G + GK++L+ RFM +F ++ G F K + ++ + L + D
Sbjct: 19 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 30.2 bits (69), Expect = 0.050
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDG 68
++G ASGK++L F F ++ + G F + + + G
Sbjct: 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG 52
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 30.2 bits (69), Expect = 0.053
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGH 69
I+G GK++L+HR++ + Q+ ++ G F KEV +DG
Sbjct: 13 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD 55
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 30.0 bits (68), Expect = 0.066
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 29 IVGSLASGKSALVHRFMTGAF 49
++G GK+ ++R + G F
Sbjct: 16 LIGDGGVGKTTYINRVLDGRF 36
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 29.8 bits (68), Expect = 0.067
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDGHSHLLLIRD 77
++G GKS+L++R++T F + G F K++ +DGH + I D
Sbjct: 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 29.8 bits (68), Expect = 0.083
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDG 68
+VG+ A GKS+++ R+ G F ++ + G F +++ ++
Sbjct: 10 VVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND 51
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 29.7 bits (67), Expect = 0.087
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDG 68
++G GKS L+ RF F + +S G F + + I+G
Sbjct: 18 LIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG 59
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 29.5 bits (67), Expect = 0.090
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGG-RFK-KEVVIDG 68
I+G GKS+L+ RF F E + G FK K + +DG
Sbjct: 20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG 61
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 29.7 bits (67), Expect = 0.095
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESP 55
IVG A GK+ L+ F F + P
Sbjct: 30 IVGDGACGKTCLLIVFSKDQFPEVYVP 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 29.5 bits (67), Expect = 0.10
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDG 68
++GS +GKS L+H+F+ F Q+ + G F + V + G
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 29.2 bits (66), Expect = 0.12
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGG-RFK-KEVVIDG 68
+ G A GKS+ + R F + S G F+ K +++DG
Sbjct: 33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDG 74
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 29.2 bits (66), Expect = 0.12
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGG-RFK-KEVVIDG 68
++G GKS L+ RF F E G F + + +DG
Sbjct: 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 29.1 bits (66), Expect = 0.12
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE--GGRFK-KEVVIDG 68
+VG GK+ L+ RF GAFL G F+ K + +DG
Sbjct: 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG 57
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 29.1 bits (66), Expect = 0.14
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGG-RFK-KEVVIDG 68
++G GK+ L +RF G F G F+ + V IDG
Sbjct: 25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG 66
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 29.1 bits (66), Expect = 0.15
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDGHSHLLLIRD 77
I+G GKS L+ +F F G F + V IDG L I D
Sbjct: 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 76
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 29.1 bits (66), Expect = 0.15
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDG 68
++G+ +GKS L+H+F+ F + + G F K + + G
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG 56
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 28.8 bits (65), Expect = 0.17
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGG-RFK-KEVVIDG 68
+VG + GK+ +V RF TGAF + + G F K + I G
Sbjct: 34 LVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQG 75
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 28.7 bits (65), Expect = 0.17
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDG 68
++G GK+ L+ RF F + G F + V++
Sbjct: 30 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT 71
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.19
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 20/88 (22%)
Query: 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE------------GGRFKKEVV 65
L P + I G L SGK+ + + E V
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 66 IDGHSHLLLIRDEGVPPELQPPNPSAPY 93
++ LL D P + S+
Sbjct: 199 LEMLQKLLYQID---PNWTSRSDHSSNI 223
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 28.7 bits (65), Expect = 0.19
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGG-RFK-KEVVIDG 68
++G GKS L+ RF F E G F + + +DG
Sbjct: 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 28.4 bits (64), Expect = 0.24
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDGHSHLLLIRD 77
++G+ GK+ LV RF G F + G F K V I+G L I D
Sbjct: 31 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 28.3 bits (64), Expect = 0.29
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDGHSHLLLIRD 77
++G GKS L+ RF+ F G FK K V I+G L I D
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWD 58
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 27.8 bits (63), Expect = 0.39
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 15/47 (31%)
Query: 26 RLGIVGSLASGKS---ALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+GIVG SGKS L+ RF PE G+ V+IDGH
Sbjct: 37 VIGIVGRSGSGKSTLTKLIQRFY--------IPENGQ----VLIDGH 71
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 27.7 bits (62), Expect = 0.43
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDG 68
++G+ GKS L+ RF + + S G FK K V +DG
Sbjct: 13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDG 54
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 27.6 bits (62), Expect = 0.45
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 3 MSSNSDTFVTSHEFTLARDVPD--LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGR 59
M S+ H L D +L ++G+ + GK++ + R+ +F G
Sbjct: 1 MGSSHHH--HHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID 58
Query: 60 FK-KEVVIDG 68
FK K V
Sbjct: 59 FKVKTVYRHD 68
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 27.6 bits (62), Expect = 0.53
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDG 68
++G GKS L+ RF + + S G FK + + +DG
Sbjct: 21 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 27.2 bits (61), Expect = 0.58
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGG-RFK-KEVVIDG 68
I+GS GK++L+ RF F + G FK K V + G
Sbjct: 31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG 72
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 27.0 bits (59), Expect = 0.78
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 26 RLGIVGSLASGKSALVHRFM---------TGAFLQEESPEGGRFK--KEVVIDGHSHLLL 74
+ + G GK+ L+H+ F EE +GGR V + G L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 75 IRDEGVPPELQPP 87
PP +
Sbjct: 63 RVGLEPPPGKREC 75
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 26.8 bits (60), Expect = 0.80
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDGHSHLLLIRD 77
++G GK+ ++ RF AF G FK + + +DG L I D
Sbjct: 13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase,
hydrolase; 1.00A {Streptomyces caespitosus} SCOP:
d.92.1.1 PDB: 1kuh_A
Length = 132
Score = 26.7 bits (58), Expect = 0.84
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 6 NSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSA 39
T VT+HE +PD G L SG
Sbjct: 75 YDSTRVTAHETGHVLGLPDHYQGPCSELMSGGGP 108
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 26.8 bits (60), Expect = 0.90
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDG 68
++G GKS L+ RF + + G FK + + +DG
Sbjct: 38 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 79
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 26.9 bits (60), Expect = 0.96
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDG 68
++G GKS L+ RF+ F + G FK K V I+G
Sbjct: 25 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 26.7 bits (59), Expect = 1.0
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 20 RDVPDLRLGIVGSLASGKSALVH------RFMTGAF 49
+D+ + + ++G GKS+ V+ F
Sbjct: 32 KDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF 67
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
thermophilus} SCOP: d.114.1.1 d.159.1.2
Length = 552
Score = 26.9 bits (60), Expect = 1.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 64 VVIDGHSHLLLIRDEGVPPELQPPNP 89
V++ GHSH LL P P
Sbjct: 233 VIVGGHSHTLLGSFPHKELSPAGPYP 258
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 26.6 bits (59), Expect = 1.1
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 64 VVIDGHSHLLLIRDEGVPPELQPPNP 89
+++ GHS + ++
Sbjct: 222 MIVGGHSQDPVCMAAENKKQVDYVPG 247
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 26.4 bits (59), Expect = 1.2
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDG 68
I+G+ + GK++ + R+ F G FK K V
Sbjct: 28 IIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 26.5 bits (58), Expect = 1.2
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 1 MKMSSNSDTFVTSHEFTLARDV-----PDLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
+K+++ + + + D+ R+ ++G +GKS L+ +TG E P
Sbjct: 672 VKVTNMEFQYPGTSK-PQITDINFQCSLSSRIAVIGPNGAGKSTLI-NVLTG----ELLP 725
Query: 56 EGGRFKK 62
G
Sbjct: 726 TSGEVYT 732
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 26.4 bits (59), Expect = 1.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDG 68
I+G GKS+L+ RF F G FK + V I+G
Sbjct: 14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING 55
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae
PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 26.5 bits (59), Expect = 1.4
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 3 MSSNSDTFVTSHEFTLARDVPD--LRLGIVGSLASGKSALVHR 43
MS SD L + LR G++ GKS L+ R
Sbjct: 1 MSHQSDLISEDILAYLGQHERKEMLRFLTCGNVDDGKSTLIGR 43
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 26.1 bits (58), Expect = 1.4
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDG 68
I+G+ + GK++ + R+ +F G FK K + +
Sbjct: 13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND 54
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 26.4 bits (59), Expect = 1.5
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 27 LGIVGSLASGKSALVH---RF 44
+ ++G SGKS L++ R
Sbjct: 372 VAVLGETGSGKSTLMNLIPRL 392
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 26.1 bits (58), Expect = 1.6
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDG 68
+G GK+ ++R+ F + G F+ K VV +
Sbjct: 30 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNA 71
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 26.2 bits (57), Expect = 1.9
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 3 MSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVH 42
M N + H +LR+ +VG +GKSA +
Sbjct: 1 MDQNEHSHWGPHAKGQCASRSELRIILVGKTGTGKSAAGN 40
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 26.0 bits (58), Expect = 1.9
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 56 EGGRFKKEV--VIDGHSHLLLIRDEGVPPE 83
GG F K V V D + ++L DE + P+
Sbjct: 187 SGGYFAKSVVPVRDQNGLVILDHDEHMRPD 216
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 25.7 bits (57), Expect = 2.0
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 29 IVGSLASGKSALVHRFM--TGAFLQE-ESPEGGRFK-KEVVIDG 68
+VG GKSAL+ F FL++ G V I
Sbjct: 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPD 68
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus
thermophilus} SCOP: c.37.1.1
Length = 203
Score = 25.6 bits (57), Expect = 2.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 25 LRLGIVGSLASGKSALVHRF 44
+ +GI G++ SGKS +
Sbjct: 9 IIIGITGNIGSGKSTVAALL 28
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 25.6 bits (57), Expect = 2.5
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK 61
L + GS +GK++L+ + E P G+ K
Sbjct: 37 LAVAGSTGAGKTSLLM-----MIMGELEPSEGKIK 66
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN
nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A
{Haemophilus influenzae} PDB: 3zu0_A*
Length = 579
Score = 25.6 bits (56), Expect = 2.6
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 64 VVIDGHSHLLLIRDEGVPPELQPPNP 89
V++ G SH L DE +L
Sbjct: 221 VIVTGDSHYLYGNDELRSLKLPVIYE 246
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 25.5 bits (55), Expect = 2.8
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 42 HRFMTGAFLQEESPEGGRF 60
R ++G L + +G +F
Sbjct: 145 IRIVSGLELSDTKQKGKKF 163
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 25.3 bits (56), Expect = 2.9
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 25 LRLGIVGSLASGKSALVHR 43
+ + I+G++ SGK+ L+ R
Sbjct: 31 VAVNIMGAIGSGKTLLIER 49
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 25.3 bits (55), Expect = 3.0
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID-GHSHLLLIRDEG 79
I+ +GKS + ++Q G R ++ID + + R G
Sbjct: 40 ILAKPGAGKSFTAKMLLLREYMQ-----GSRV---IIIDPEREYKEMCRKLG 83
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 25.3 bits (55), Expect = 3.0
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 4 SSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVH------RFMTGAFLQEESPEG 57
S + + LR+ +VG +GKSA + F +G + + +
Sbjct: 9 SGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKC 68
Query: 58 GRFKKEV------VID 67
+ V+D
Sbjct: 69 EKRSSSWKETELVVVD 84
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 25.3 bits (56), Expect = 3.1
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 29 IVGSLASGKSALVHRFMTGAF 49
+G GK+++++++ G F
Sbjct: 16 ALGDSGVGKTSVLYQYTDGKF 36
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 25.3 bits (56), Expect = 3.1
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 25 LRLGIVGSLASGKSALVHR 43
+ +G++ SGK+ L+ +
Sbjct: 39 VAFDFMGAIGSGKTLLIEK 57
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 25.4 bits (56), Expect = 3.2
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK 61
L + GS +GK++L+ + E P G+ K
Sbjct: 67 LAVAGSTGAGKTSLLM-----MIMGELEPSEGKIK 96
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 25.4 bits (56), Expect = 3.4
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 19/52 (36%)
Query: 29 IVGSLASGKS---ALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRD 77
+VG+ GKS L+ R P G V IDG IR
Sbjct: 421 LVGNSGCGKSTTVQLMQRLY--------DPLDG----MVSIDGQD----IRT 456
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 25.4 bits (55), Expect = 3.5
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTG--AFLQEESPEGG---RFKKEVVI 66
+ E + RL +VG +GKSA + + G F
Sbjct: 9 SGRENLYFQGESTRRLILVGRTGAGKSATGN-SILGQRRFFSRLGATSVTRACTTGSRRW 67
Query: 67 DGHSHLLLIRD 77
D + + D
Sbjct: 68 DKCH--VEVVD 76
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 25.2 bits (55), Expect = 3.5
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 2 KMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHR 43
M+ +S+ + +H+ + +G+ G ASGKS++ +
Sbjct: 2 GMAGDSEQTLQNHQQPNGGEP--FLIGVSGGTASGKSSVCAK 41
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 25.2 bits (56), Expect = 3.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 25 LRLGIVGSLASGKSALVHRF 44
R+G+ G++ GKS + F
Sbjct: 2 KRIGLTGNIGCGKSTVAQMF 21
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 25.2 bits (56), Expect = 3.8
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 9/42 (21%)
Query: 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68
+ +VG + GKS+L+ A L E G V I G
Sbjct: 34 VAVVGQVGCGKSSLLS-----ALLAEMDKVEG----HVAIKG 66
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 24.9 bits (54), Expect = 4.4
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 20 RDVPDLRLGIVGSLASGKSALVH------RFMTGAF 49
DV L + ++G GKS+ V+ F
Sbjct: 35 EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 4.6
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 27/93 (29%)
Query: 6 NS-DTFV-TSHEFTLARDVPDLRLGIVGS--------LASGKSALVHRFMTGAFLQEESP 55
N V + +L LR S + K +RF L SP
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-----LPVASP 426
Query: 56 EGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN 88
F HSHLL+ + + +L N
Sbjct: 427 ----F--------HSHLLVPASDLINKDLVKNN 447
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome,
ribosome, eukaryotic initiation factor 60S,
translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 24.9 bits (54), Expect = 4.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 60 FKKEVVIDGHSHLL 73
F K VVID HLL
Sbjct: 2 FDKLVVIDAKGHLL 15
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB:
1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K*
1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K*
1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Length = 145
Score = 24.5 bits (54), Expect = 4.9
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 60 FKKEVVIDGHSHLL 73
F +V++D ++
Sbjct: 6 FDADVIVDARDCIM 19
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 24.6 bits (53), Expect = 5.1
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 25 LRLGIVGSLASGKSALVHRFM------TGAFLQEESPEGGRFKKE----VVIDGHSHLLL 74
+++ I G GK+ LV + + F EE + K+ + +G +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 75 IRDEGVPP 82
+
Sbjct: 61 SKFFTSKK 68
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 24.7 bits (54), Expect = 5.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68
R+G++G SGKS L AFL+ + EG E+ IDG
Sbjct: 49 RVGLLGRTGSGKSTL-----LSAFLRLLNTEG-----EIQIDG 81
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta
barrel, OB-fold, 3D domain swapping, signaling protein
activator; HET: P6G; 2.60A {Escherichia coli} PDB:
2z4h_A*
Length = 233
Score = 24.7 bits (53), Expect = 5.6
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 36 GKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG 68
K L+ + G F E +P+ G K + D
Sbjct: 171 EKPVLLS--VEGHFTLEGNPDTGAPTKVLAPDT 201
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 24.5 bits (54), Expect = 5.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 25 LRLGIVGSLASGKSALVHRF 44
LG+ G SGKS++ R
Sbjct: 76 YVLGLTGISGSGKSSVAQRL 95
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for
structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga
maritima}
Length = 192
Score = 24.4 bits (54), Expect = 5.8
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 25 LRLGIVGSLASGKSALVHRF 44
+ +G+ G + +GKS +
Sbjct: 13 MVIGVTGKIGTGKSTVCEIL 32
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 24.6 bits (54), Expect = 5.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 25 LRLGIVGSLASGKSALVHR 43
L LGI G SGK+ L ++
Sbjct: 23 LVLGIDGLSRSGKTTLANQ 41
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 24.6 bits (52), Expect = 6.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 23 PDLRLGIVGSLASGKSALV 41
RL ++G + GKS +
Sbjct: 68 GVFRLLVLGDMKRGKSTFL 86
>3qfk_A Uncharacterized protein; structural genomics, center for structural
genomics of infec diseases, csgid, phosphoesterase,
hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus
subsp}
Length = 527
Score = 24.6 bits (54), Expect = 6.6
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 17 TLARDVPDLRLG---IVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEV-----VIDG 68
L + +P+++ IV G + L E+ + I G
Sbjct: 187 ILQQYLPEMKRHADIIVVCYHGGFEKDLESGTPTEVLTGENEGYAMLEAFSKDIDIFITG 246
Query: 69 HSHLLLI-RDEGVP 81
H H + R +
Sbjct: 247 HQHRQIAERFKQTA 260
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 24.3 bits (53), Expect = 6.7
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 14/39 (35%)
Query: 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE 56
A+ P+ + FLQE++P+
Sbjct: 268 GAKKFPNTE--------------FVKVKGLHFLQEDAPD 292
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 24.1 bits (53), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
++ L +VG SGK+ V+ +G F ++ P
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIP 53
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 24.3 bits (53), Expect = 7.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ 51
+AR + VG SGK+ L R +TG +
Sbjct: 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRD 34
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 24.3 bits (53), Expect = 7.1
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 14/55 (25%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQ---------EESPEGGRFKKEVVID--GHSHL 72
I G SGK++L+ T + +G ++D GH L
Sbjct: 53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVT---LVDFPGHVKL 104
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 24.1 bits (53), Expect = 7.9
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 55 PEGGRFKKEVVIDGHSHLLLIRDEGV--PPELQP 86
P GG + V ID L+ I D GV E
Sbjct: 140 PNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLE 173
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type
I ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 24.2 bits (53), Expect = 8.8
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 28 GIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
G++G+ +GKS L+ R + E P G V++DG
Sbjct: 58 GVIGASGAGKSTLI-RCVNLL----ERPTEGS----VLVDGQ 90
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 24.1 bits (53), Expect = 9.6
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 20 RDVPDLRLGIVG-SLASGKSALVHR 43
P L G +LA+ +SA HR
Sbjct: 492 AREPRNSLRDTGFTLATRRSAWEHR 516
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 24.0 bits (52), Expect = 9.6
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 12/51 (23%)
Query: 41 VHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA 91
H+F +G+F E I + + I ++ PE+
Sbjct: 445 PHKFSSGSFT------------EGRIAAKAAVRFILEQKPNPEIDDAVVEE 483
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
phosphoprotein, transfe two-component regulatory system;
3.80A {Thermotoga maritima}
Length = 349
Score = 24.2 bits (53), Expect = 9.7
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 54 SPEGGRFKKEVVIDGHSHLLLIRDEGV--PPELQP 86
+ E G+ K + + + G P EL+
Sbjct: 260 TGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE 294
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 24.0 bits (52), Expect = 9.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQ 51
I G SGK++L+ T +
Sbjct: 17 IAGPQNSGKTSLLTLLTTDSVRP 39
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 23.8 bits (52), Expect = 9.9
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 29 IVGSLASGKSAL 40
I G+ GKS L
Sbjct: 7 IAGTTGVGKSQL 18
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 24.1 bits (53), Expect = 10.0
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 23 PDLRLGIVG-SLASGKSALVHR 43
PD L VG LA+ ++ HR
Sbjct: 473 PDADLAGVGLGLATTRARHEHR 494
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.392
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,478,668
Number of extensions: 80803
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 145
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)