RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6968
(93 letters)
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 53.8 bits (128), Expect = 4e-11
Identities = 30/60 (50%), Positives = 47/60 (78%)
Query: 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEG 79
R +P+LRLG++G SGKS+L+HRF+TG++ E E ++KKE+++DG +HL+LIR+E
Sbjct: 1 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 60
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 48.3 bits (114), Expect = 6e-09
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
++ ++G+ GK+ LV RF G F + G K V I+G L I D
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 45.5 bits (107), Expect = 5e-08
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
+L ++G GK+ ++ RF AF G + + +DG L I D
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 43.1 bits (100), Expect = 5e-07
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 21 DVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
++P +L +VG GKSAL +F F+ + P
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDP 35
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 42.9 bits (100), Expect = 6e-07
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVIDGHSHLLLIRD 77
+ L++ I+G GKS+L+ RF F E + G K + +DG+ L I D
Sbjct: 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 62
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 42.3 bits (98), Expect = 1e-06
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
+ +L ++GS GKSAL +F+ G F+++ P ++ V
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ 50
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 42.5 bits (99), Expect = 1e-06
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
+L ++G+ GKS L+ RF + + G K V +DG + L I D
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 41.9 bits (97), Expect = 1e-06
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
+++L I G GKSALV RF+T F+ E P
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDP 33
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 41.8 bits (97), Expect = 1e-06
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVIDGHSHLLLIRDEG 79
++ ++G GKS L+ RF F E G + + +DG + I D
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 41.7 bits (97), Expect = 1e-06
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
+++ ++G GKS L+ RF+ F G K V I+G L I D
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWD 57
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 41.6 bits (96), Expect = 1e-06
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF 60
V ++L ++G A GKS++V RF++ F + + P G
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA 39
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 41.4 bits (96), Expect = 2e-06
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
+ ++ ++GS GKSAL +F+TG F+++ P F ++ + S
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP 50
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 41.5 bits (96), Expect = 2e-06
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPE 83
++ +VG A GK+ L+ + T F E P V+ G L + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 40.4 bits (93), Expect = 5e-06
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
RL +VG GKSAL +F+ F+ + P + +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRA 52
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 40.4 bits (93), Expect = 5e-06
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIR 76
+ +L +VG+ GKSAL + + F+ E P ++ V+ LL
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 40.1 bits (92), Expect = 5e-06
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
L++ I+G GK++L+HR++ + Q+ G +
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD 49
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 39.9 bits (92), Expect = 7e-06
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRDEGVPPE 83
++L +G GK+ ++R+ F + G F+++ V+ +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 84 LQP 86
LQ
Sbjct: 66 LQL 68
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 39.2 bits (90), Expect = 1e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
D R+ + G+ GKS+LV RF+ G F + P
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP 33
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 38.9 bits (89), Expect = 1e-05
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
++ I+G + GKS+L +F+ G F+ P +++
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNG 49
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 38.9 bits (89), Expect = 1e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
++ +VG GK+AL+H F F + P
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP 33
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 38.8 bits (89), Expect = 1e-05
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF 60
+L IVG A GK+ L+ F + P
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN 38
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 38.7 bits (89), Expect = 2e-05
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVIDGHSHLLLIRD 77
++ I+G+ + GK++ + R+ +F G K + + L I D
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 38.5 bits (88), Expect = 2e-05
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLI 75
++ L +VG SGK+ V+ +G F ++ P G +++ + L
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 53
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 38.4 bits (88), Expect = 2e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58
++ +VGS GKSAL +FM F+++ P
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 38.5 bits (88), Expect = 2e-05
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
+++ +VG+ A GKS+++ R+ G F ++
Sbjct: 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK 33
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 38.1 bits (87), Expect = 3e-05
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
L++ I+G GK++L+++++ F +
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKA 33
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 38.4 bits (88), Expect = 3e-05
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRDEGVPP 82
+ ++G+ +GKS L+H+F+ F + + G K + + G L I D
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65
Query: 83 ELQPPNPS 90
+ S
Sbjct: 66 RFRSVTRS 73
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 38.1 bits (87), Expect = 3e-05
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
+L++ ++G GKS+++ RF+ +F +P
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP 35
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 37.7 bits (86), Expect = 4e-05
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58
++ ++G GK+ L +RF G F G
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 36
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 37.9 bits (87), Expect = 4e-05
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP---EGGRFKKEVVIDGHSHLLLIRD 77
++ +VG GK+ L+ RF GAFL K + +DG L + D
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 37.3 bits (85), Expect = 5e-05
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF 60
+ +L ++G A GKS+LV RF+ G F + + G
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 42
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 37.2 bits (85), Expect = 6e-05
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVIDGHSHLLLIRDEG 79
+ I+G + GKS L+H+F F+ + G + + + G L I D
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 36.9 bits (84), Expect = 9e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESP 55
+L +G + GK++L+ RFM +F
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQA 31
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 36.9 bits (84), Expect = 1e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
++ +VG A GK+ L+ + T AF E P
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP 36
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 36.8 bits (84), Expect = 1e-04
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
+ I+G GKS L+ +F F
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL 34
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 36.6 bits (83), Expect = 1e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESP 55
+L +VG +GK+ V R +TG F ++
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVA 34
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 36.5 bits (83), Expect = 1e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
L+ +VG A GK+ L+ + AF +E P
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVP 40
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 35.7 bits (81), Expect = 2e-04
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
++ ++G GK++LV R+ F +
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHIT 34
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 35.8 bits (81), Expect = 2e-04
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
+L +VG GKSAL +F+ F+ + P ++
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIP 53
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 34.9 bits (79), Expect = 4e-04
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQE 52
++ ++G GKS+L++R++T F +
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQ 34
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 34.7 bits (78), Expect = 5e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPE 56
R+ ++G GKS L + F + E
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCE 35
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 34.6 bits (78), Expect = 5e-04
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAF 49
+R+ +VG A+GK+ ++++ G
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI 25
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 33.9 bits (76), Expect = 0.001
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAF 49
++R+ I+G +GK+ +++R G
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVGEV 30
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 33.2 bits (74), Expect = 0.002
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF 60
++ ++G+ GKSAL F E+ G
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHT 36
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 32.7 bits (73), Expect = 0.003
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
VG SGK+ L R +TG + ++ V + +
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGN 47
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 32.6 bits (73), Expect = 0.003
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAF 49
+++L ++G+ SGKS +V +
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIHE 27
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 32.6 bits (73), Expect = 0.003
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAF 49
+L+L ++G+ SGKS + +
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHG 27
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 31.9 bits (71), Expect = 0.006
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKK 62
+LR+ I+G +GK+ +++R G + + G +
Sbjct: 17 ELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVET 55
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.5 bits (70), Expect = 0.007
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL 72
++R+ ++G +GK+ L+ + + +G K ++
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNV 64
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 31.5 bits (70), Expect = 0.008
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG 57
++R+ ++G A+GK+ ++++ G + G
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG 45
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.2 bits (69), Expect = 0.009
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAF 49
+LRL ++G +GK+ ++ +F
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFNGEDV 27
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.8 bits (68), Expect = 0.011
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAF 49
+L +G +GK+ L+H
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL 25
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 30.6 bits (68), Expect = 0.015
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPEL 84
+++ ++G+ SGKS + + + + P G E + + + D G
Sbjct: 3 VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGI--HEYDFEIKNVPFKMVDVGGQRSE 57
Query: 85 QPPNP 89
+
Sbjct: 58 RKRWF 62
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.4 bits (67), Expect = 0.019
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
+L +G +GK+ L+H Q ++ +
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 60
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 30.2 bits (67), Expect = 0.025
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 25 LRLGIVGSLASGKSALVHRFM 45
+R+GI G GKS +
Sbjct: 52 IRVGITGVPGVGKSTTIDALG 72
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 30.1 bits (66), Expect = 0.029
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 19/93 (20%)
Query: 10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK-------K 62
T ++ + I G L + + + TG + GG +
Sbjct: 406 HATEEDYPQVSQLIPRLEEIAGRL------VFNGWPTGVEVGYAMVHGGPYPASTHSAST 459
Query: 63 EVVIDGHSHLL------LIRDEGVPPELQPPNP 89
V + L + + +P L+ NP
Sbjct: 460 SVGAEAIHRWLRPVAYQALPESLLPDSLKAENP 492
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.7 bits (66), Expect = 0.030
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAF 49
RL ++G+ SGKS +V +
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILHV 31
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 29.3 bits (64), Expect = 0.039
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
+++ I G +GKS+L++ G + G + + H
Sbjct: 2 MKVVIAGRPNAGKSSLLNAL-AGREAAIVTDIAGTTRDVLREHIHID 47
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 0.042
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
+ ++ IVG +GK+ ++++F + G ++ V+ +
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 58
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 28.8 bits (63), Expect = 0.078
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 27 LGIVGSLASGKSALVHRF 44
+GI G++ SGKS +
Sbjct: 6 IGITGNIGSGKSTVAALL 23
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 28.7 bits (63), Expect = 0.084
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 27 LGIVGSLASGKSALVHRF 44
+G+ G + SGK+ + + F
Sbjct: 5 VGLTGGIGSGKTTIANLF 22
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas
syringae pv. tomato [TaxId: 323]}
Length = 222
Score = 28.7 bits (63), Expect = 0.089
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 25 LRLGIVGSLASGKSALVHRFM--TGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP 82
LR G++ GKS L+ R + + ++ R K+ G L + +G+
Sbjct: 10 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQA 69
Query: 83 E 83
E
Sbjct: 70 E 70
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.0 bits (61), Expect = 0.12
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP 86
+G+ G ASGKS++ + + Q E K+ V++ S ++ E L+
Sbjct: 5 IGVSGGTASGKSSVCAKIVQ-LLGQNEVDYRQ--KQVVILSQDSFYRVLTSEQKAKALKG 61
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 28.3 bits (62), Expect = 0.12
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 27 LGIVGSLASGKSALVHRF 44
+ + G + SGKS + + F
Sbjct: 6 VALTGGIGSGKSTVANAF 23
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 27.9 bits (61), Expect = 0.16
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 25 LRLGIVGSLASGKSALVHRFM 45
LRLG+ G+ +GKS + F
Sbjct: 55 LRLGVTGTPGAGKSTFLEAFG 75
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 27.6 bits (60), Expect = 0.18
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 20 RDVPDLRLGIVGSLASGKSALVHR--FMTGAFLQEESPEGGRFKK 62
+ P++ +G+VG + GK+ LV + + EE G K
Sbjct: 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKL 48
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.5 bits (60), Expect = 0.22
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 20 RDVPDLRLGIVGSLASGKSALVHRFM 45
DV L + ++G GKS+ V+ +
Sbjct: 28 EDVNSLTILVMGKGGVGKSSTVNSII 53
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha,
N-terminal (G) domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 224
Score = 27.1 bits (59), Expect = 0.28
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 23 PDLRLGIVGSLASGKSALVHR--FMTGAFLQEESPEGGRFKKEVVIDGHSH 71
P L L ++G + GKS LV R G ++ E K++ +
Sbjct: 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKF 52
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha,
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 239
Score = 26.9 bits (59), Expect = 0.35
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 20 RDVPDLRLGIVGSLASGKSALVHR--FMTGAF-------LQEESPE--GGRFKKEVVIDG 68
++ + + ++G + SGKS + G ++E+ E G FK V+D
Sbjct: 2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 61
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 26.7 bits (58), Expect = 0.35
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 23 PDLRLGIVGSLASGKSALVHR--FMTGAFLQEESPEGGRFKKEVVIDGH 69
+ + +G + +GKS L F+TG + + R KE +
Sbjct: 23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESW 71
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.7 bits (59), Expect = 0.44
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS 70
+ VG GKS L++ + G +++IDGH+
Sbjct: 46 TVAFVGMSGGGKSTLIN-----LIPRFYDVTSG----QILIDGHN 81
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.3 bits (56), Expect = 0.55
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1 MKMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRF 44
M++ D F+ + L LGI G SGK+ L ++
Sbjct: 1 MELRDRID-FLCKTILAIKTAGR-LVLGIDGLSRSGKTTLANQL 42
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.0 bits (57), Expect = 0.57
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+GIVG SGKS L + PE +V+IDGH
Sbjct: 31 VIGIVGRSGSGKSTLTK-----LIQRFYIPE----NGQVLIDGH 65
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 26.0 bits (57), Expect = 0.63
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 60 FKKEVVIDGHSHLL 73
F +V++D ++
Sbjct: 3 FDADVIVDARDCIM 16
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 26.2 bits (56), Expect = 0.63
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 21 DVPDLRLGIVGSLASGKSALVHR 43
D ++ LGI G + GK+ L
Sbjct: 2 DFKNINLGIFGHIDHGKTTLSKV 24
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 26.1 bits (56), Expect = 0.72
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 23 PDLRLGIVGSLASGKSALVHR--FMTGAFLQEESPEGGRFK 61
++ +G+VG + GK+ L + EE G K
Sbjct: 4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIK 44
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 25.8 bits (55), Expect = 0.77
Identities = 8/55 (14%), Positives = 17/55 (30%)
Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPE 83
G SGK+ ++H+ E + + + + + PE
Sbjct: 39 FAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE 93
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 25.9 bits (55), Expect = 0.84
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 3 MSSNSDTFVTSHEFTLARDVPDLRL---GIVGSLASGKSALVHRFMTGAFLQEESPEGG 58
M V S P+ L + G GKS+ ++ + L S + G
Sbjct: 1 MKVTKSEIVISA--VKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPG 57
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 25.6 bits (55), Expect = 0.91
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 27 LGIVGSLASGKSALVHRF 44
+VG SGK+ L+ ++
Sbjct: 4 WQVVGYKHSGKTTLMEKW 21
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 25.3 bits (54), Expect = 0.96
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG----RFKKEVVIDGHSH 71
LR+ IVG GKS L++R + + G +E+VI G
Sbjct: 1 LRMVIVGKPNVGKSTLLNR-LLNEDRAIVTDIPGTTRDVISEEIVIRGILF 50
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 25.3 bits (54), Expect = 1.0
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF 60
+++ I G GK+ LV ++ F
Sbjct: 1 MKIIITGEPGVGKTTLVK-----KIVERLGKRAIGF 31
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 25.4 bits (54), Expect = 1.2
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAF 49
+ I G SGK++L+ T +
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSV 28
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 25.1 bits (54), Expect = 1.4
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58
L + + G SGKS+ ++ +E + + G
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 90
>d1igra1 c.10.2.5 (A:1-149) Type 1 insulin-like growth factor
receptor extracellular domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 24.8 bits (54), Expect = 1.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 59 RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS 90
R + VI+G+ H+LLI + P +
Sbjct: 18 RLENCTVIEGYLHILLISKAEDYRSYRFPKLT 49
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 24.9 bits (53), Expect = 1.5
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 25 LRLGIVGSLASGKSALVHRFM 45
+ + G SGK M
Sbjct: 2 KLIFLSGVKRSGKDTTADFIM 22
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 25 LRLGIVGSLASGKSALVHRFM 45
+++ IVG GKS L + +
Sbjct: 9 IKVAIVGRPNVGKSTLFNAIL 29
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 25.0 bits (53), Expect = 1.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 28 GIVGSLASGKSALVHRF 44
VG+ SGK+ L F
Sbjct: 4 VFVGTAGSGKTTLTGEF 20
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 24.7 bits (52), Expect = 1.8
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 28 GIVGSLASGKSALVHRFMTGAFLQEESPEGG 58
IVG GKS L++ G + SP
Sbjct: 9 AIVGKPNVGKSTLLNNL-LGVKVAPISPRPQ 38
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 24.8 bits (54), Expect = 1.8
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 9/44 (20%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+ G GKS + + P G E+ IDG
Sbjct: 30 IIAFAGPSGGGKSTIFS-----LLERFYQPTAG----EITIDGQ 64
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus
[TaxId: 53502]}
Length = 132
Score = 24.4 bits (53), Expect = 1.8
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSA 39
T VT+HE +PD G L SG
Sbjct: 78 TRVTAHETGHVLGLPDHYQGPCSELMSGGGP 108
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 24.5 bits (53), Expect = 2.5
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+VG SGKS + P G ++++DG
Sbjct: 42 VTALVGPNGSGKSTVAA-----LLQNLYQPTG----GQLLLDGK 76
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 24.1 bits (52), Expect = 3.1
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
L I GS SGK++L+ L E G + G
Sbjct: 65 LAITGSTGSGKTSLLM-----LILGELEASEG----IIKHSGR 98
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 24.0 bits (50), Expect = 3.1
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 10 FVTSHEFTLARDVPD---LRLGIVGSLASGKSALVHRFM 45
FV S R +P + + G +GKS+ ++
Sbjct: 1 FVMS--APDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT 37
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 24.1 bits (52), Expect = 3.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 28 GIVGSLASGKSALVHRFM 45
+ GS +G S + H F
Sbjct: 8 SVTGSSGAGTSTVKHTFD 25
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Thermus thermophilus [TaxId:
274]}
Length = 204
Score = 23.8 bits (51), Expect = 4.6
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 23 PDLRLGIVGSLASGKSALVHR--FMTGAF 49
P + +G +G + GK+ L ++ A
Sbjct: 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAE 30
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine
decarboxylase (PPC decarboxylase, halotolerance protein
Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 182
Score = 23.5 bits (50), Expect = 5.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 27 LGIVGSLASGKSA-LVHRFMTGA 48
L GS+A+ K L H F A
Sbjct: 6 LAASGSVAAIKFGNLCHCFTEWA 28
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 23.5 bits (49), Expect = 5.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 28 GIVGSLASGKSALVHRFMTGAFLQEESPEGG 58
G+VG +GKS+L+ MT A +
Sbjct: 5 GLVGYPNAGKSSLLAA-MTRAHPKIAPYPFT 34
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2),
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 341
Score = 23.5 bits (50), Expect = 5.5
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 18 LARDVPDLR-LGIVGSLASGKSALVHR--FMTGAFLQEESPEGG 58
L V ++R + ++ + GKS L G ++ E
Sbjct: 10 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEAR 53
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 23.1 bits (49), Expect = 6.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 23 PDLRLGIVGSLASGKSALVHR 43
P + +G +G + GK+ L
Sbjct: 2 PHVNVGTIGHVDHGKTTLTAA 22
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 23.0 bits (48), Expect = 6.9
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 27 LGIVGSLASGKSALVHR 43
L +GK+ L+ +
Sbjct: 5 LAFAAWSGTGKTTLLKK 21
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 22.9 bits (49), Expect = 7.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
+ I+G SGKS +++ + P G EV ID
Sbjct: 34 VSIMGPSGSGKSTMLNIIGC-----LDKPTEG----EVYIDNI 67
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 22.9 bits (48), Expect = 8.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 28 GIVGSLASGKSALVHR--FMTGAFLQEESPEGG 58
+VG SGK+ L + TGA + E G
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG 38
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 22.9 bits (49), Expect = 8.3
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
G++G+ +GKS L+ E P G V++DG
Sbjct: 34 YGVIGASGAGKSTLIR-----CVNLLERPTEG----SVLVDGQ 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.392
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 346,720
Number of extensions: 14338
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 111
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)