BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6970
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 1 KYEVEFLLQQQWHDPRLEYF----NQTTYDFLNAIHHHSDVWLPDTYFIMHGD-FKDPLI 55
+Y + L++ W D RL Y Q + L H +W+PDT+F +K +
Sbjct: 48 EYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQ---IWMPDTFFPNEKQAYKHTID 104
Query: 56 PVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKN 115
+ +RI+ +GTV Y +R L+LSC L +P D CS + S +Y IEY+WK
Sbjct: 105 KPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKE 164
Query: 116 DEDTLRKSPSLTTLNAYLITNRTISCPTKTT 146
K ++L ++ +TN + + T T
Sbjct: 165 HSPLQLKVGLSSSLPSFQLTNTSTTYCTSVT 195
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Nicotinic Acetylcholine Receptor 1 Subunit Bound To
Alpha-Bungarotoxin At 1.9 A Resolution
Length = 212
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
L+QQW D L++ N Y + IH S+ +W PD + D ++ L Y
Sbjct: 57 LKQQWVDYNLKW-NPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTKVLLDY-T 114
Query: 67 GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
G + + C+ + FPFD+ CS + + +Y+ SA+ ++D+ L
Sbjct: 115 GHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESDQPDL 168
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH--GDFKDPLIPVHFALRIY 64
L W D RL++ + Y+ + + SD VW PD + + G F+ I +H + +
Sbjct: 56 LNLAWTDYRLQW-DPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFE---ITLHVNVLVQ 111
Query: 65 RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSP 124
G V++ SC + FPFD C+ +S +Y+ S E + ++ D +
Sbjct: 112 HTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTS--EVILQHALDAMINQD 169
Query: 125 SLTTLNAYLITNRTISCPTKTTWR 148
+ T + I ++ P++ WR
Sbjct: 170 AFTENGQWSIEHK----PSRKNWR 189
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSDV-WLPDTYFI--MHGDFKDPLIPVHFALRIY 64
++ QW+D RL + N + Y+ ++ + S++ WLPD + G F+ + + + +Y
Sbjct: 55 IEIQWNDYRLSW-NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFE---VAYYANVLVY 110
Query: 65 RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISY 104
+G++ +L +C ++ FPFD CS S +Y
Sbjct: 111 NDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTY 150
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSDV-WLPDTYFI--MHGDFKDPLIPVHFALRIY 64
++ QW+D RL + N + Y+ ++ + S++ WLPD + G F+ + + + +Y
Sbjct: 55 IEIQWNDYRLSW-NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFE---VAYYANVLVY 110
Query: 65 RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISY 104
+G++ +L +C ++ FPFD CS S +Y
Sbjct: 111 NDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTY 150
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ5|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
pdb|4AQ9|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 461
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 3 EVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHS-DVWLPDTYFIMHGDFKDPLIPVHFA- 60
E L+QQW D RL + N Y + I S DVWLPD +++ + VH
Sbjct: 75 ETNVRLRQQWIDVRLRW-NPADYGGIKKIRLPSDDVWLPD--LVLYNNADGDFAIVHMTK 131
Query: 61 LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
L + G + + C+ + FPFD C+ + +Y+ + + ++D L
Sbjct: 132 LLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDL 191
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution.
pdb|2BG9|D Chain D, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 3 EVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHS-DVWLPDTYFIMHGDFKDPLIPVHFA- 60
E L+QQW D RL + N Y + I S DVWLPD +++ + VH
Sbjct: 51 ETNVRLRQQWIDVRLRW-NPADYGGIKKIRLPSDDVWLPD--LVLYNNADGDFAIVHMTK 107
Query: 61 LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
L + G + + C+ + FPFD C+ + +Y+ + + ++D L
Sbjct: 108 LLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDL 167
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH--GDFKDPLIPVHFALRIY 64
L W D RL++ + Y+ + + SD VW PD + + G F+ I +H + +
Sbjct: 80 LNLAWTDYRLQW-DPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFE---ITLHVNVLVQ 135
Query: 65 RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAI 109
G V++ SC + FPFD C+ +S +Y+ S +
Sbjct: 136 HTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEV 180
>pdb|4AOE|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
Length = 205
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 1 KYEVEFLLQQQWHDPRLEYFNQ-TTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHF 59
+ E+ L W D L + N+ TT++ L + +WLP + ++ P I
Sbjct: 49 QVELGLWLVISWKDRSLSWSNECTTFNELTLPSKY--IWLP--HIEVYNSIGKPGIHSDQ 104
Query: 60 ALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSA 108
+R+Y++GTV ++ + + SC A+E+++ EQ A
Sbjct: 105 LVRVYKDGTVTFVPQYTIRFSC----------------ALENVTTEQGA 137
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYR- 65
+ W+D RL + N + Y ++ + + +W+PD + D + + +F + R
Sbjct: 58 MDHAWYDHRLTW-NASEYSDISILRLRPELIWIPDIVLQNNNDGQYNV--AYFCNVLVRP 114
Query: 66 NGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIE 110
NG V +L SC ++ FPFD CS +++Y + I
Sbjct: 115 NGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEIS 159
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
Length = 205
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 12 WHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNY 71
W D L +FN+ T F +++W PD + + P I R+ ++GTV Y
Sbjct: 60 WKDRCLNWFNEFT-SFKELTVPIAEIWTPDIF--IFDSVGAPEIFSDKLARVSQDGTVTY 116
Query: 72 LMRRHLILSC 81
+ + + LSC
Sbjct: 117 VPQLKVRLSC 126
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYR- 65
+ W+D RL + N + Y ++ + + +W+PD + D + + +F + R
Sbjct: 79 MDHAWYDHRLTW-NASEYSDISILRLRPELIWIPDIVLQNNNDGQYNV--AYFCNVLVRP 135
Query: 66 NGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAI 109
NG V +L SC ++ FPFD CS +++Y + I
Sbjct: 136 NGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEI 179
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 30.0 bits (66), Expect = 0.54, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 69 VNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTT 128
V Y R H G+ F F D F E+I Y + V K ++ L S
Sbjct: 81 VGYTSRHHTFFEMLGN---FSFGD---YFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDD 134
Query: 129 LNAYLITNRTISCPTKTTWR 148
AY I N I P++ WR
Sbjct: 135 EEAYRIWNEHIGIPSERIWR 154
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 30.0 bits (66), Expect = 0.54, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 69 VNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTT 128
V Y R H G+ F F D F E+I Y + V K ++ L S
Sbjct: 80 VGYTSRHHTFFEMLGN---FSFGD---YFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDD 133
Query: 129 LNAYLITNRTISCPTKTTWR 148
AY I N I P++ WR
Sbjct: 134 EEAYRIWNEHIGIPSERIWR 153
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 29.6 bits (65), Expect = 0.71, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 69 VNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTT 128
V Y R H G+ F F D F E+I Y + V K ++ L S
Sbjct: 81 VGYTSRHHTFFEXLGN---FSFGD---YFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDD 134
Query: 129 LNAYLITNRTISCPTKTTWR 148
AY I N I P++ WR
Sbjct: 135 EEAYRIWNEHIGIPSERIWR 154
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 126 LTTLNAYLITNRTISCPTKTTWR 148
+TT++AY T +T+ P+K WR
Sbjct: 173 MTTVHAYTATQKTVDGPSKKDWR 195
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 126 LTTLNAYLITNRTISCPTKTTWR 148
+TT+++Y T +T+ P++ WR
Sbjct: 179 MTTVHSYTATQKTVDGPSRKAWR 201
>pdb|3ETS|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With 4-
Methylumbelliferone Bound In The Active Site
pdb|3ETS|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With 4-
Methylumbelliferone Bound In The Active Site
pdb|3ETT|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With
4-Nitrophenol Bound In The Active Site
pdb|3ETT|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With
4-Nitrophenol Bound In The Active Site
Length = 571
Score = 25.8 bits (55), Expect = 9.9, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 69 VNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTT 128
+ Y R+ + GS+H+F PT + I Y+ + K + D L P+ T
Sbjct: 504 IEYQADRNTMFGFGGSIHLFDVGQPTVG-KLNEIDYKTKEV----KVEIDVLSDKPNQTH 558
Query: 129 LNAYLI 134
A L+
Sbjct: 559 YRALLV 564
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,047,535
Number of Sequences: 62578
Number of extensions: 205140
Number of successful extensions: 627
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 20
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)