Query psy6970
Match_columns 148
No_of_seqs 161 out of 1053
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:28:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 100.0 1E-36 2.2E-41 239.1 9.3 134 1-139 79-217 (459)
2 KOG3644|consensus 100.0 1.3E-31 2.9E-36 215.8 13.1 138 1-142 86-230 (457)
3 TIGR00860 LIC Cation transport 100.0 1.7E-31 3.6E-36 217.1 12.7 135 1-137 75-212 (459)
4 PF02931 Neur_chan_LBD: Neurot 100.0 3.3E-31 7.1E-36 195.9 11.8 116 1-117 46-162 (217)
5 KOG3642|consensus 100.0 8E-29 1.7E-33 195.7 9.3 139 1-143 88-229 (466)
6 KOG3645|consensus 100.0 1.2E-27 2.7E-32 194.0 12.5 135 2-139 76-212 (449)
7 KOG3646|consensus 99.9 5.7E-28 1.2E-32 190.8 6.5 115 3-119 74-189 (486)
8 PF11211 DUF2997: Protein of u 36.6 25 0.00054 19.7 1.4 23 60-82 2-24 (48)
9 PRK14751 tetracycline resistan 33.6 33 0.00072 16.6 1.3 19 82-100 5-23 (28)
10 PF11455 DUF3018: Protein of 30.3 22 0.00048 21.3 0.5 10 34-43 19-28 (65)
11 PF15016 DUF4520: Domain of un 26.3 1.8E+02 0.0038 18.4 5.0 37 60-99 17-55 (85)
No 1
>KOG3643|consensus
Probab=100.00 E-value=1e-36 Score=239.07 Aligned_cols=134 Identities=28% Similarity=0.645 Sum_probs=119.2
Q ss_pred CeEEEEEEEcEEECCCCccCCCCCCCCcceeee----cceeecCCeEEeeccc-ccCCCcccceEEEEeeCCEEEEecce
Q psy6970 1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH----HSDVWLPDTYFIMHGD-FKDPLIPVHFALRIYRNGTVNYLMRR 75 (148)
Q Consensus 1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~----~~~iW~Pdi~~~n~~~-~~~~~~~~~~~~~i~~~G~V~~~~~~ 75 (148)
|||+++|++|.|+||||+| + .+++..+.+ .++||+||.+|.|++. +-...+..+..++|++||+|.+..|+
T Consensus 79 DyTlt~y~rq~W~D~RLay-~---~~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~Rl 154 (459)
T KOG3643|consen 79 DYTLTMYLRQTWRDPRLAY-S---SKNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRL 154 (459)
T ss_pred hhhhhhhhhhhhcCccccc-C---CCCCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEE
Confidence 6999999999999999999 4 344555544 4899999999999754 33333455889999999999999999
Q ss_pred eEEEEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970 76 HLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI 139 (148)
Q Consensus 76 ~~~~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~ 139 (148)
+.++.|+|||++||+|+|+|+|.++||+|+.+||++.|..++.+|...+.+ +||||.++++.+
T Consensus 155 T~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g~~av~~~e~i-~LpqFti~~~~~ 217 (459)
T KOG3643|consen 155 TVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKGDNAVKGDEKI-ELPQFTITEYHV 217 (459)
T ss_pred EEEEecccccccCCCcccceeEEEEecccccccEEEEEcCCCccccceeee-eccceEEEEEEE
Confidence 999999999999999999999999999999999999999999999999987 899999999975
No 2
>KOG3644|consensus
Probab=99.97 E-value=1.3e-31 Score=215.82 Aligned_cols=138 Identities=28% Similarity=0.598 Sum_probs=117.5
Q ss_pred CeEEEEEEEcEEECCCCccCC-CC-CCCCcceeeec--ceeecCCeEEeeccc--ccCCCcccceEEEEeeCCEEEEecc
Q psy6970 1 KYEVEFLLQQQWHDPRLEYFN-QT-TYDFLNAIHHH--SDVWLPDTYFIMHGD--FKDPLIPVHFALRIYRNGTVNYLMR 74 (148)
Q Consensus 1 ~ft~~~~l~~~W~D~rL~w~~-p~-~~~~i~~~~~~--~~iW~Pdi~~~n~~~--~~~~~~~~~~~~~i~~~G~V~~~~~ 74 (148)
+|+++++++|+|.||||++ + .+ ++.......+. ++||.||++|.|++. ++.... .+..+.|++||+|.+..|
T Consensus 86 df~~di~~~~~W~DpRL~~-~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~-~N~ll~I~pnGtV~~~~R 163 (457)
T KOG3644|consen 86 DFEVDIYFRERWQDPRLAY-NALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTK-PNVLLMIFPNGTVWYSYR 163 (457)
T ss_pred eEEeeeeeeeeEeCccccc-cccCcccccccccccccCCceecCceeeecccceeeecCCC-CceEEEEecCCeEEEEEE
Confidence 6999999999999999999 5 33 33333333343 459999999999764 554443 488999999999999999
Q ss_pred eeEEEEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE-eee
Q psy6970 75 RHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI-SCP 142 (148)
Q Consensus 75 ~~~~~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~-~~~ 142 (148)
+.++.+|+|+|.+||+|+|+|.+.++||+|+.+||+++|.+.+ +|+..+++ .||||.+.+.+. .|.
T Consensus 164 i~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~-pv~~~~~i-~LPdf~l~~~~~~~~~ 230 (457)
T KOG3644|consen 164 ISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWN-PVQVKKDI-KLPDFSLPSFSTEKCT 230 (457)
T ss_pred EEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCC-CcccccCc-cCCceeccceeecccc
Confidence 9999999999999999999999999999999999999998765 99999998 899999999964 443
No 3
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.97 E-value=1.7e-31 Score=217.14 Aligned_cols=135 Identities=29% Similarity=0.578 Sum_probs=113.1
Q ss_pred CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCC-CcccceEEEEeeCCEEEEecceeEE
Q psy6970 1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDP-LIPVHFALRIYRNGTVNYLMRRHLI 78 (148)
Q Consensus 1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~-~~~~~~~~~i~~~G~V~~~~~~~~~ 78 (148)
+|++++|++|+|+|+||+| ||++|++++.+++ .++||+||++++|+++.... ....+..+++++||+|.|.++...+
T Consensus 75 ~~t~~~wl~~~W~D~rL~W-np~~y~~i~~i~~~~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~ 153 (459)
T TIGR00860 75 DYTTNIWLRQEWTDERLQW-NPEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLT 153 (459)
T ss_pred eEEEeeeeeeEEeCCccCC-CCccCCCceeccccccccccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEE
Confidence 4899999999999999999 9999999999888 58999999999997653322 2223556677779999999999999
Q ss_pred EEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCC-ccccccceecce
Q psy6970 79 LSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPS-LTTLNAYLITNR 137 (148)
Q Consensus 79 ~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~-~~~l~~~~~~~~ 137 (148)
+.|+||+++||||+|+|.|+|+||+|+.+++++.|.++ ..+..+.+ ....++|.+.+.
T Consensus 154 ~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~~~~-~~v~~~~~~~~~~~eW~l~~~ 212 (459)
T TIGR00860 154 LACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQ-GAVQVDDSLFISLPEFELLGV 212 (459)
T ss_pred ecccceeccCCCCCccccEEEhhhccccceEEEEECCC-CceEechhhccccCceEEEee
Confidence 99999999999999999999999999999999999765 34444332 125789998874
No 4
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.97 E-value=3.3e-31 Score=195.90 Aligned_cols=116 Identities=32% Similarity=0.647 Sum_probs=98.3
Q ss_pred CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970 1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL 79 (148)
Q Consensus 1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~ 79 (148)
+|++++++.++|.|+||+| +|++|+++..+.+ .++||+|++++.|..............+.|+++|+|.+..++.+++
T Consensus 46 ~~~~~~~~~~~W~D~rL~w-~~~~~~~i~~~~v~~~~iW~P~l~~~n~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~ 124 (217)
T PF02931_consen 46 TFTVDGFIRLSWKDPRLKW-NPSDYGGIESIRVPSSQIWTPDLYFYNSVSGSFEITEPNSNVRVYSDGTVRYSPRFTLTF 124 (217)
T ss_dssp EEEEEEEEEEEEEECCGE--STTTTTTESEEEEEGGGS----EEETTBSSSEEECS-SSEEEEEETTSEEEEEEEEEEEE
T ss_pred hhhhhhhhceecccccccc-ChhhccCcccccccccceEecccccccccccceecccccccccccccchheeeecccccc
Confidence 3789999999999999999 9999999999988 5899999999999544332222235799999999999999999999
Q ss_pred EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCC
Q psy6970 80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117 (148)
Q Consensus 80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~ 117 (148)
.|+|++.+||||+|.|.|.|+|+.|+.++|.+.+....
T Consensus 125 ~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~~~ 162 (217)
T PF02931_consen 125 SCPMDLRDFPFDSQNCSIKFGSWSYNSEEVQLKWENKN 162 (217)
T ss_dssp EECETTTSSSSSEEEEEEEEEESSSSTTTEEEEESCSS
T ss_pred cccccccccccccceeEEEEecccccccceeeeecccC
Confidence 99999999999999999999999999999999998743
No 5
>KOG3642|consensus
Probab=99.96 E-value=8e-29 Score=195.66 Aligned_cols=139 Identities=26% Similarity=0.522 Sum_probs=117.0
Q ss_pred CeEEEEEEEcEEECCCCccCCCCCCCCccee-eecceeecCCeEEeeccccc-CCCcccceEEEEeeCCEEEEecceeEE
Q psy6970 1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAI-HHHSDVWLPDTYFIMHGDFK-DPLIPVHFALRIYRNGTVNYLMRRHLI 78 (148)
Q Consensus 1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~-~~~~~iW~Pdi~~~n~~~~~-~~~~~~~~~~~i~~~G~V~~~~~~~~~ 78 (148)
||+++++++|.|.|+||++ +.. ...+.-. .+..+||+||.+|.|+++.. +..+..+..++|..||+|.|..|++..
T Consensus 88 eytid~~FrQ~W~D~RL~f-~~~-~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi~ 165 (466)
T KOG3642|consen 88 EYTIDCFFRQTWVDDRLKF-NGP-QEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTIP 165 (466)
T ss_pred eEEEEEEEEEeehhhhhcc-cCc-chhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEEEeec
Confidence 7999999999999999999 522 1222211 12589999999999976533 334455889999999999999999999
Q ss_pred EEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCcc-ccccceecceEEeeee
Q psy6970 79 LSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLT-TLNAYLITNRTISCPT 143 (148)
Q Consensus 79 ~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~ 143 (148)
+.|+|++.+||+|.|.|.+.|+|++|+.+|+.+.|+.+ +|+++++.+ +|+||++.|.+++.+.
T Consensus 166 A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY~W~~~--~VeV~~~~~~~L~Qf~l~g~~~~te~ 229 (466)
T KOG3642|consen 166 AECPMHLARFPMDSHACPLKFGSYAYPGSEVVYKWKKR--SVEVNETDSWSLDQFDLLGVSVGTED 229 (466)
T ss_pred ccCcchhhcCCCCcccCcceecccCcCCCCEEEEEecc--cEEEcCCCCccccceeeecccccccc
Confidence 99999999999999999999999999999999999986 888887765 8999999999875443
No 6
>KOG3645|consensus
Probab=99.95 E-value=1.2e-27 Score=194.03 Aligned_cols=135 Identities=21% Similarity=0.348 Sum_probs=105.8
Q ss_pred eEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEEE
Q psy6970 2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILS 80 (148)
Q Consensus 2 ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~ 80 (148)
-++++|+.++|+|+||+| ||++|+||+.+++ .++||+||++++|++...... .....+.+.++|+|.+.+++..+++
T Consensus 76 ~t~~~wl~~~W~D~~L~W-np~~~~~I~~i~vp~~~IW~Pdi~l~N~~~~~~~~-~~~~~v~v~~~G~V~~~~p~i~~s~ 153 (449)
T KOG3645|consen 76 MTTNVWLKQSWTDERLSW-DPSDYGGITKIRVPSSKIWLPDIVLYNNADGDFEV-EDLTNVLVTYTGEVLWYPPAIYKSS 153 (449)
T ss_pred EEEEEEeeeEEeccCccc-ChHHcCCceEEEecHHHcCcCcEEEEecccccccc-cccceEEEEECCEEEEEcceEEEee
Confidence 478999999999999999 9999999999999 589999999999954333222 2344699999999999999999999
Q ss_pred ccccccccCCCCCeeEEEEEcccccCCcEE-EEEecCCCceeecCCccccccceecceEE
Q psy6970 81 CQGSLHIFPFDDPTCSFAMESISYEQSAIE-YVWKNDEDTLRKSPSLTTLNAYLITNRTI 139 (148)
Q Consensus 81 C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~-l~~~~~~~~v~~~~~~~~l~~~~~~~~~~ 139 (148)
|++|+++||||.|+|.++|+||+|+.+++. +........+....- .+-.+|.+.+.+.
T Consensus 154 C~idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~~~~~~~~~~~~~~~-~~n~eW~l~~~~~ 212 (449)
T KOG3645|consen 154 CPIDVTYFPFDVQNCSIKFGSWTYDGSEVDGLDLNAQTIEVDLSDF-IENSEWELLSVTV 212 (449)
T ss_pred cccccccCCCcceeEeEEEeccccCccccceeeeccccccCCHHHc-CCCCcEEEEeeee
Confidence 999999999999999999999999999876 443322111222221 2445566555543
No 7
>KOG3646|consensus
Probab=99.94 E-value=5.7e-28 Score=190.77 Aligned_cols=115 Identities=23% Similarity=0.457 Sum_probs=102.5
Q ss_pred EEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEEEc
Q psy6970 3 EVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSC 81 (148)
Q Consensus 3 t~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C 81 (148)
++++|++.+|+|.+|+| ||++|+||+.++. .++||+||+.++|+++.+-.. ...+++.++++|.|.|.++...+++|
T Consensus 74 ~~naWl~y~W~D~~LrW-~pseygnI~dvR~p~~~iWkPDVLLYNSade~FDs-Ty~tN~Vv~~tG~v~~vPPGIfk~sC 151 (486)
T KOG3646|consen 74 SVNAWLQYQWNDYKLRW-DPSEYGNITDIRFPGGNIWKPDVLLYNSADEQFDS-TYKTNYVVYSTGSVLWVPPGIFKSSC 151 (486)
T ss_pred hhhhhhheeehhhhhcc-CHHHhCCceeeccCCccccCCceeccccccccCCC-cceeeEEEccCCeeeecCCceeeeee
Confidence 57899999999999999 9999999999999 589999999999987644211 23578999999999999999999999
Q ss_pred cccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCc
Q psy6970 82 QGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDT 119 (148)
Q Consensus 82 ~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~ 119 (148)
.+|++.||||.|.|.++||||+|++..++|.....+..
T Consensus 152 kiDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~g~ 189 (486)
T KOG3646|consen 152 KIDITWFPFDDQVCYLKFGSWTYAGILLDLRIDDEDGG 189 (486)
T ss_pred EEEEEEecccccEEEEEeeeEEEcceeeeeeeccccCC
Confidence 99999999999999999999999999999887655444
No 8
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=36.62 E-value=25 Score=19.68 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=17.5
Q ss_pred EEEEeeCCEEEEecceeEEEEcc
Q psy6970 60 ALRIYRNGTVNYLMRRHLILSCQ 82 (148)
Q Consensus 60 ~~~i~~~G~V~~~~~~~~~~~C~ 82 (148)
.++|++||+|.-...-..-.+|.
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~ 24 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCL 24 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHH
Confidence 46889999998877766666663
No 9
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=33.55 E-value=33 Score=16.56 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=14.9
Q ss_pred cccccccCCCCCeeEEEEE
Q psy6970 82 QGSLHIFPFDDPTCSFAME 100 (148)
Q Consensus 82 ~~~l~~fPfD~q~C~l~~~ 100 (148)
+|-+..||-|...|...|.
T Consensus 5 ~mi~h~~psdksi~hwdf~ 23 (28)
T PRK14751 5 PMVMHKNPSDKSIYHWDFY 23 (28)
T ss_pred eeeeecCCCcCceeeeeeh
Confidence 4667889999999987653
No 10
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=30.34 E-value=22 Score=21.34 Aligned_cols=10 Identities=40% Similarity=1.029 Sum_probs=7.8
Q ss_pred cceeecCCeE
Q psy6970 34 HSDVWLPDTY 43 (148)
Q Consensus 34 ~~~iW~Pdi~ 43 (148)
+=.||+||+-
T Consensus 19 PVqiWVPDtr 28 (65)
T PF11455_consen 19 PVQIWVPDTR 28 (65)
T ss_pred cceeeCCCCC
Confidence 4579999984
No 11
>PF15016 DUF4520: Domain of unknown function (DUF4520)
Probab=26.28 E-value=1.8e+02 Score=18.41 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=24.6
Q ss_pred EEEEeeCCEE--EEecceeEEEEccccccccCCCCCeeEEEE
Q psy6970 60 ALRIYRNGTV--NYLMRRHLILSCQGSLHIFPFDDPTCSFAM 99 (148)
Q Consensus 60 ~~~i~~~G~V--~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~ 99 (148)
....++||+| .+..+.++++.+.++-.. +...|++.|
T Consensus 17 rF~AysDgrVr~~F~Drt~L~l~~~~~~~~---~~~~c~l~~ 55 (85)
T PF15016_consen 17 RFTAYSDGRVRVHFDDRTILTLIWNFSSRE---ELGWCKLTF 55 (85)
T ss_pred EEEEEcCCeEEEEEcCCCEEEEEeCCCCcc---cCCEEEEEc
Confidence 5677888986 567788888887554433 455565544
Done!