RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6970
(148 letters)
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 111 bits (278), Expect = 3e-30
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIH--HHSDVWLPDTYFIM--HGDFKDPLIPV 57
Y + L++ W D RL + + + +W+PDT+F P
Sbjct: 49 YSAQLTLRESWIDKRLS-YGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKP- 106
Query: 58 HFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
+ +RI+ +GTV Y +R L+LSC L +P D CS + S +Y IEY+WK
Sbjct: 107 NVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHS 166
Query: 118 DTLRKSPSLTTLNAYLITNRTISCPTKTTW 147
K ++L ++ +TN + + T T
Sbjct: 167 PLQLKVGLSSSLPSFQLTNTSTTYCTSVTN 196
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 102 bits (257), Expect = 2e-27
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 6/128 (4%)
Query: 2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHH---SDVWLPDTYFIMHGDFKDPLIPVH 58
Y+V+ + QW + N + +W+P FI + +
Sbjct: 33 YKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFI---NVVGSPDTGN 89
Query: 59 FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
L ++ +G V Y R S +FPFD +E SY + +
Sbjct: 90 KRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYT 149
Query: 119 TLRKSPSL 126
+ +
Sbjct: 150 ENIDNEEI 157
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 90.5 bits (225), Expect = 9e-24
Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 6/148 (4%)
Query: 2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFAL 61
++V L W D RL F+ + +W+P+ F+ + ++ +
Sbjct: 37 FKVNAFLSLSWKDRRLA-FDPVRSGVRVKTYEPEAIWIPEIRFV---NVENARDADVVDI 92
Query: 62 RIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLR 121
+ +GTV YL R + D T + S + I ++
Sbjct: 93 SVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKN 152
Query: 122 KSPSLT--TLNAYLITNRTISCPTKTTW 147
LT + ++ + + +
Sbjct: 153 DDVFLTGWDIESFTAVVKPANFALEDRL 180
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 86.9 bits (216), Expect = 1e-21
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFAL 61
++V L W D RL F+ + +W+P+ F+ + ++ +
Sbjct: 41 FKVNAFLSLSWKDRRLA-FDPVRSGVRVKTYEPEAIWIPEIRFV---NVENARDADVVDI 96
Query: 62 RIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
+ +GTV YL R + +PFD T + S + I ++
Sbjct: 97 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEK 152
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 56.4 bits (136), Expect = 2e-10
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 6 FLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIY 64
L+QQW D RL + N Y + I SD VWLPD + D D I L +
Sbjct: 54 VRLRQQWIDVRLRW-NPADYGGIKKIRLPSDDVWLPDLVLYNNAD-GDFAIVHMTKLLLD 111
Query: 65 RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
G + + C+ + FPFD C+ + +Y+ + + ++D
Sbjct: 112 YTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDR 164
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 55.0 bits (132), Expect = 6e-10
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 6 FLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIY 64
L+QQW D RL + N Y + I SD VWLPD + D ++ + L +
Sbjct: 78 VRLRQQWIDVRLRW-NPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLL-LD 135
Query: 65 RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
G + + C+ + FPFD C+ + +Y+ + + ++D L
Sbjct: 136 YTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDL 191
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 53.6 bits (129), Expect = 1e-09
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFI--MHGDFKDPLIPVHFALRIY 64
L+QQW D L++ N Y + IH S+ +W PD GDF + +
Sbjct: 57 LKQQWVDYNLKW-NPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFT---KVLLD 112
Query: 65 RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
G + + C+ + FPFD+ CS + + +Y+ SA+ ++D+
Sbjct: 113 YTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESDQ 165
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 52.4 bits (125), Expect = 5e-09
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 9 QQQWHDPRLEYFNQTTYDFLNAIH-HHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNG 67
+ QW+D RL + N + Y+ ++ + +WLPD + + + + + +Y +G
Sbjct: 56 EIQWNDYRLSW-NTSEYEGIDLVRIPSELLWLPDVV-LENNVDGQFEVAYYANVLVYNDG 113
Query: 68 TVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
++ +L +C ++ FPFD CS S +Y + +E +
Sbjct: 114 SMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEV 166
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 50.6 bits (121), Expect = 1e-08
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIH-HHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
LQ W D L++ N + Y + + S +W+PD + L P + +
Sbjct: 54 LQMSWTDHYLQW-NVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQL--ALVNSS 110
Query: 67 GTVNYLMRRHLILSCQGSLHIFPFDDP-TCSFAMESISYEQSAIEYV 112
G V YL SC + + TC S ++ ++
Sbjct: 111 GHVQYLPSIRQRFSC--DVSGVDTESGATCKLKFGSWTHHSRELDLQ 155
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 51.3 bits (122), Expect = 1e-08
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
+ W+D RL + N + Y ++ + + +W+PD + + + + + + N
Sbjct: 79 MDHAWYDHRLTW-NASEYSDISILRLRPELIWIPDIV-LQNNNDGQYNVAYFCNVLVRPN 136
Query: 67 GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
G V +L SC ++ FPFD CS +++Y + I D
Sbjct: 137 GYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDT 187
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 51.3 bits (122), Expect = 1e-08
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 3/129 (2%)
Query: 9 QQQWHDPRLEYFNQTTYDFLNAIH-HHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNG 67
W D RL++ + Y+ + + DVW PD + + D I +H + + G
Sbjct: 81 NLAWTDYRLQW-DPAAYEGIKDLSIPSDDVWQPDIVLMNNND-GSFEITLHVNVLVQHTG 138
Query: 68 TVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLT 127
V++ SC + FPFD C+ +S +Y+ S + D R+ +
Sbjct: 139 AVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIM 198
Query: 128 TLNAYLITN 136
N
Sbjct: 199 INQDAFTEN 207
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 51.0 bits (122), Expect = 1e-08
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFI--MHGDFKDPLIPVHFALRIY 64
+ W+D RL + N + Y ++ + + +W+PD G + + + +
Sbjct: 58 MDHAWYDHRLTW-NASEYSDISILRLRPELIWIPDIVLQNNNDGQYN---VAYFCNVLVR 113
Query: 65 RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKS 123
NG V +L SC ++ FPFD CS +++Y + I D + ++
Sbjct: 114 PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTEN 172
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 51.0 bits (122), Expect = 2e-08
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
L W D RL++ + Y+ + + SD VW PD + + D I +H + +
Sbjct: 56 LNLAWTDYRLQW-DPAAYEGIKDLSIPSDDVWQPDIVLMNNND-GSFEITLHVNVLVQHT 113
Query: 67 GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
G V++ SC + FPFD C+ +S +Y+ S + D
Sbjct: 114 GAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDA 164
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 50.2 bits (120), Expect = 2e-08
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIH-HHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
QQ+W L + + Y + +D+W PD L P + +
Sbjct: 65 EQQRWKLNSLMW-DPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQI--AVVTHD 121
Query: 67 GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
G+V ++ + L C + + TC+ S Y I+ D+
Sbjct: 122 GSVMFIPAQRLSFMCDPTGV-DSEEGATCAVKFGSWVYSGFEIDLKTDTDQ 171
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 50.3 bits (120), Expect = 3e-08
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 9 QQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFI--MHGDFKDPLIPVHFALRIYR 65
+ QW+D RL + N + Y+ ++ + S+ +WLPD + G F+ + +Y
Sbjct: 56 EIQWNDYRLSW-NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYA---NVLVYN 111
Query: 66 NGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
+G++ +L +C ++ FPFD CS S +Y + +E
Sbjct: 112 DGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEG 164
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 49.4 bits (118), Expect = 3e-08
Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
Q W P + + L+ + +W PD F + L + + ++
Sbjct: 52 TQASWKVPYY--SSLLSSSSLDQVSLPVSKMWTPDLSFYNAIAAPELLSADR--VVVSKD 107
Query: 67 GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
G+V Y+ + + +C +++ TC + S +++ + +
Sbjct: 108 GSVIYVPSQRVRFTCD-LINVDTEPGATCRIKVGSWTHDNKQFALITGEEG 157
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 47.2 bits (112), Expect = 2e-07
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
++ W D L + + I D +W PD + + D + ++ N
Sbjct: 65 VKLSWVDTILRW-DPEPPFDFQKIEISPDEIWTPDIK-LFNSVDLDMTLDRTTQAIVFSN 122
Query: 67 GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
GTV ++ L + C D +C F S Y ++ + +D+
Sbjct: 123 GTVLWIPPAVLKVLCV-----SQDDVDSCHFQFGSWVYSVDEVDIHFMDDK 168
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 45.3 bits (107), Expect = 1e-06
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 7/111 (6%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
Q W D L + + + + +W+PD + + R+ +
Sbjct: 55 QQTTWSDRTLAW---NSSHSPDQVSVPISSLWVPDLAAYNAISKPE--VLTPQLARVVSD 109
Query: 67 GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
G V Y+ SC S TC + S ++ I +
Sbjct: 110 GEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTTEN 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.004
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 28/109 (25%)
Query: 36 DVW------LPDTY-F-IMHGDFKDPL-IPVHFALRIYRNGTVNY--LMRRHLILSCQGS 84
DVW DTY F I+ +P+ + +HF + NY ++ ++ +
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 85 LHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRK----SPSLTTL 129
IF + + Y +++++ L P+LT +
Sbjct: 1704 EKIFKEINEHST-------------SYTFRSEKGLLSATQFTQPALTLM 1739
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein,
oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB:
3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A*
3b0j_A* 3b0l_A* 3b0h_A*
Length = 591
Score = 28.1 bits (63), Expect = 1.1
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 10/54 (18%)
Query: 60 ALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAM-ESISYEQSAIEYV 112
+ ++ + L+ +C G+ C A+ E+ + E V
Sbjct: 449 EPVLSTFSPDPPILMKGLV-ACTGN--------QFCGQAIIETKARSLKITEEV 493
>1tbu_A Peroxisomal acyl-coenzyme A thioester hydrolase 1; yeast
peroxisomal thioesterase, , domain swapping, iodine
SOAK, siras; 2.20A {Saccharomyces cerevisiae} SCOP:
d.38.1.3
Length = 118
Score = 27.0 bits (60), Expect = 1.3
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 43 YFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAME 100
YFI G DP + + ++ RNG N++ ++ + + Q IF FA++
Sbjct: 69 YFIKGG---DPRTKITYHVQNLRNGR-NFIHKQ--VSAYQHDKLIFTS---MILFAVQ 117
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP:
d.3.1.13
Length = 333
Score = 28.0 bits (61), Expect = 1.3
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 49 DFKDPLIPVHFALRIYRNGTVNYLMRRHLI 78
F++ L Y+NG +Y+ R H
Sbjct: 113 SFQECLKHTR-----YKNGKRSYINRNHFT 137
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 27.7 bits (62), Expect = 1.6
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 44 FIMHGDFKDPLIPVHFALRIYRN 66
I+HGD +D +P ++ +
Sbjct: 193 LIVHGD-QDEAVPYEASVAFSKQ 214
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
heme, electron transport, oxidoreductase; HET: SRM;
2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
d.134.1.1 d.134.1.1
Length = 608
Score = 27.7 bits (62), Expect = 1.7
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 60 ALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAM-ESISYEQSAIEYV 112
L R ++ + L+ +C GS C A+ E+ + E V
Sbjct: 467 PLLKERYSPEPPILMKGLV-ACTGS--------QFCGQAIIETKARALKVTEEV 511
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 27.4 bits (60), Expect = 2.0
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNG 67
L Q + V +HG +D ++P+ +
Sbjct: 144 LPQGQVVEDPGVLALYQAPPATRGEAYGGV----PLLHLHGS-RDHIVPLARMEKTLEAL 198
Query: 68 TVNYLMRRHLILSCQGSLH 86
+Y R +G+ H
Sbjct: 199 RPHYPEGRLARFVEEGAGH 217
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 26.5 bits (58), Expect = 3.4
Identities = 1/23 (4%), Positives = 5/23 (21%), Gaps = 1/23 (4%)
Query: 44 FIMHGDFKDPLIPVHFALRIYRN 66
+ D + + +
Sbjct: 204 IAFTAN-NDDWVKQEEVYDMLAH 225
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme,
[4Fe-4S], snirr, six-electron REDU phosphate complex;
HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1
d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A*
3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A*
7gep_A* 8gep_A*
Length = 497
Score = 26.1 bits (58), Expect = 5.8
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 10/54 (18%)
Query: 60 ALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAM-ESISYEQSAIEYV 112
+ R + + +C PTC AM E+ + S I+ +
Sbjct: 341 IAKESGLMNAVTPQRENSM-ACVSF--------PTCPLAMAEAERFLPSFIDNI 385
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 25.7 bits (56), Expect = 7.7
Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 1/76 (1%)
Query: 8 LQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNG 67
+ + LE+ + + +D+ LP D + + Y+
Sbjct: 510 YAKMYTHDSLEFVVSQSI-WFEGEVPFADIILPACTNFERWDISEFANCSGYIPDNYQLC 568
Query: 68 TVNYLMRRHLILSCQG 83
+ + + G
Sbjct: 569 NHRVISLQAKCIEPVG 584
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus
HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A
{Oceanicola granulosus} PDB: 3bvc_A
Length = 216
Score = 25.3 bits (55), Expect = 8.1
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 29 NAIHHHSDVWLPDTYFIMHGD------FKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 82
+ H H + T ++ + +DP +P A R G L +
Sbjct: 116 HGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKV 175
Query: 83 GSLHIFP 89
G + ++
Sbjct: 176 GDVLLWE 182
>2hqt_A GU4 nucleic-binding protein 1; GST-fold, biosynthetic protein, RNA
binding; 1.90A {Saccharomyces cerevisiae} SCOP: a.45.1.2
PDB: 2hrk_B 2hsm_B 2hsn_B
Length = 124
Score = 25.0 bits (54), Expect = 8.9
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 101 SISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTISCPTKTT 146
S + EQSA W++ + + P L LN L N I T
Sbjct: 21 SFTKEQSAQAAQWESVLKSGQIQPHLDQLNLVLRDNTFIVSTLYPT 66
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 25.1 bits (55), Expect = 9.8
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 44 FIMHGDFKDPLIPVHFALRIYRN 66
F++ D +I A IY
Sbjct: 186 FVVQAR-HDEMINPDSANIIYNE 207
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.452
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,434,048
Number of extensions: 132804
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 38
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)