RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6970
         (148 letters)



>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 48.2 bits (114), Expect = 4e-08
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 5/116 (4%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFAL 61
            +V F  Q  W D  L + +  + D ++     S +W+PD          + L P     
Sbjct: 49  VDVVFWQQTTWSDRTLAWNSSHSPDQVS--VPISSLWVPDLAAYNAISKPEVLTPQL--A 104

Query: 62  RIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           R+  +G V Y+       SC  S  +      TC   + S ++    I      + 
Sbjct: 105 RVVSDGEVLYMPSIRQRFSCDVSG-VDTESGATCRIKIGSWTHHSREISVDPTTEN 159


>d2im9a1 d.3.1.13 (A:49-352) Hypothetical protein Lpg0564
           {Legionella pneumophila [TaxId: 446]}
          Length = 305

 Score = 26.9 bits (59), Expect = 1.0
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 5/30 (16%)

Query: 49  DFKDPLIPVHFALRIYRNGTVNYLMRRHLI 78
            F++ L         Y+NG  +Y+ R H  
Sbjct: 88  SFQECLKHTR-----YKNGKRSYINRNHFT 112


>d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 118

 Score = 24.5 bits (53), Expect = 4.3
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 105 EQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTISC---PTKTTWR 148
           EQSA    W++   + +  P L  LN  L  N  I     PT T   
Sbjct: 22  EQSAQAAQWESVLKSGQIQPHLDQLNLVLRDNTFIVSTLYPTSTDVH 68


>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 52

 Score = 22.8 bits (49), Expect = 6.2
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 2  YEVEFLLQQQWHDPRLEYF 20
          +  E LL+++    R+EY 
Sbjct: 5  FAAEALLKRRIRKGRMEYL 23


>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 52

 Score = 22.8 bits (49), Expect = 7.3
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 2  YEVEFLLQQQWHDPRLEYF 20
          Y VE ++ ++     +EY+
Sbjct: 2  YAVEKIIDRRVRKGMVEYY 20


>d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 597

 Score = 24.4 bits (52), Expect = 8.2
 Identities = 6/27 (22%), Positives = 8/27 (29%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIHHH 34
                 D R+    + T D     HH 
Sbjct: 331 WDLGKGDFRILMCTKVTMDDFLTAHHE 357


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.452 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 620,394
Number of extensions: 27629
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 10
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.1 bits)