Query psy6972
Match_columns 133
No_of_seqs 132 out of 725
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:30:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 100.0 7.5E-36 1.6E-40 245.8 4.1 106 1-106 228-333 (459)
2 KOG3644|consensus 100.0 7.7E-34 1.7E-38 238.1 7.1 105 1-105 237-341 (457)
3 KOG3642|consensus 100.0 8.4E-31 1.8E-35 216.8 4.0 105 1-105 236-340 (466)
4 TIGR00860 LIC Cation transport 99.9 7.2E-27 1.6E-31 196.4 6.3 107 1-107 226-332 (459)
5 PF02932 Neur_chan_memb: Neuro 99.9 4.9E-25 1.1E-29 160.2 -3.8 83 22-104 1-83 (237)
6 KOG3646|consensus 99.8 2.4E-19 5.1E-24 149.1 4.6 104 2-106 222-327 (486)
7 KOG3645|consensus 99.7 2.4E-18 5.2E-23 144.6 4.9 106 2-107 226-332 (449)
8 PF12263 DUF3611: Protein of u 54.0 3.6 7.7E-05 31.2 -0.4 10 31-40 16-25 (183)
9 PF05393 Hum_adeno_E3A: Human 51.1 20 0.00044 24.1 2.9 21 75-95 30-51 (94)
10 PF09777 OSTMP1: Osteopetrosis 45.6 43 0.00093 26.2 4.5 49 69-117 180-228 (237)
11 PF09125 COX2-transmemb: Cytoc 39.7 53 0.0012 18.5 3.0 19 82-100 19-37 (38)
12 PF01956 DUF106: Integral memb 38.1 39 0.00085 24.5 3.0 58 26-87 98-155 (168)
13 PF14494 DUF4436: Domain of un 34.9 31 0.00068 27.4 2.2 92 5-97 154-250 (256)
14 PF06365 CD34_antigen: CD34/Po 33.8 61 0.0013 25.0 3.5 28 101-128 123-152 (202)
15 PF06643 DUF1158: Protein of u 33.8 46 0.00099 21.7 2.4 23 83-105 54-76 (82)
16 PF11169 DUF2956: Protein of u 31.3 27 0.00058 24.1 1.1 15 23-38 84-98 (103)
17 PHA03290 envelope glycoprotein 27.3 82 0.0018 26.3 3.4 44 77-120 273-316 (357)
18 PF01102 Glycophorin_A: Glycop 26.1 62 0.0013 22.9 2.3 11 98-108 83-93 (122)
19 PF11395 DUF2873: Protein of u 25.8 1.4E+02 0.003 17.0 3.4 24 74-97 3-26 (43)
20 KOG4812|consensus 23.4 1E+02 0.0023 24.6 3.2 79 26-109 167-252 (262)
21 PRK09510 tolA cell envelope in 22.9 98 0.0021 26.2 3.2 28 17-44 14-41 (387)
22 PHA02902 putative IMV membrane 21.8 2.3E+02 0.0049 18.0 4.2 21 77-97 2-22 (70)
23 PF06196 DUF997: Protein of un 20.2 2.3E+02 0.0051 18.4 4.0 34 79-112 44-78 (80)
No 1
>KOG3643|consensus
Probab=100.00 E-value=7.5e-36 Score=245.80 Aligned_cols=106 Identities=39% Similarity=0.770 Sum_probs=104.1
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 80 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~ 80 (133)
||+.+.+.|.++|+.|||++|+|+|++++|++||+||||+.|+++||+++|+|++|||++...+.+++||++||+|+||+
T Consensus 228 ~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDi 307 (459)
T KOG3643|consen 228 NYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDV 307 (459)
T ss_pred cceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCccceeeehh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccC
Q psy6972 81 WDGVCMCFIYASLLEFVCVNYVGRKR 106 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V~~~~~~~ 106 (133)
|+.+|++|||+|++|||+|||...++
T Consensus 308 YL~vCFvfVF~sLLEYA~V~Y~~~~~ 333 (459)
T KOG3643|consen 308 YLGVCFVFVFLSLLEYAAVNYMFKRR 333 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999988866
No 2
>KOG3644|consensus
Probab=100.00 E-value=7.7e-34 Score=238.15 Aligned_cols=105 Identities=50% Similarity=0.972 Sum_probs=103.2
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 80 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~ 80 (133)
+|+|++++++++|+.|||++|.|+|+.++|++||+|||++++|++||++||+|+||++++....+...||++||+++||+
T Consensus 237 ~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~~LP~VSYvKAIDV 316 (457)
T KOG3644|consen 237 VYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRRNLPKVSYVKAIDV 316 (457)
T ss_pred ceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhhcCCchhhHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972 81 WDGVCMCFIYASLLEFVCVNYVGRK 105 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V~~~~~~ 105 (133)
|+++|++|+|+|++|+++|+|+.++
T Consensus 317 Wm~~C~~FIF~sLlE~A~V~~~~~~ 341 (457)
T KOG3644|consen 317 WMGVCMTFIFGSLLELAVVNYVGRR 341 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999886
No 3
>KOG3642|consensus
Probab=99.96 E-value=8.4e-31 Score=216.85 Aligned_cols=105 Identities=36% Similarity=0.728 Sum_probs=102.6
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 80 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~ 80 (133)
||+.+++.|+++|+.|||++|+|+||+++|++||++||+++|+++||.++|||++|||++.....+.++|++||.|++|+
T Consensus 236 ey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVsy~TAmD~ 315 (466)
T KOG3642|consen 236 EYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVSYATALDV 315 (466)
T ss_pred CEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCCccccchhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972 81 WDGVCMCFIYASLLEFVCVNYVGRK 105 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V~~~~~~ 105 (133)
|.++|++|+|+|++|+++|||+...
T Consensus 316 fIavCf~FvFsaliEfa~vNYft~~ 340 (466)
T KOG3642|consen 316 FIAVCFIFVFAALVEFAVVNYFTLN 340 (466)
T ss_pred HHHHHHHHHHHHHHHHHheeeeeec
Confidence 9999999999999999999999843
No 4
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.93 E-value=7.2e-27 Score=196.41 Aligned_cols=107 Identities=41% Similarity=0.812 Sum_probs=102.3
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 80 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~ 80 (133)
+|++++++++++|+++||++++++||++++++||++||+|+++.++|+++|+|++|++++++..+++.+|++||+|+||+
T Consensus 226 ~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S~vpli~~ 305 (459)
T TIGR00860 226 EYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAIDV 305 (459)
T ss_pred CcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCCCcchHHHHHH
Confidence 48999999999999999999999999999999999999999977999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCc
Q psy6972 81 WDGVCMCFIYASLLEFVCVNYVGRKRP 107 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V~~~~~~~~ 107 (133)
|+++|++++++|++|+++|+++.++.+
T Consensus 306 y~~~~~~~v~~sli~tv~V~~~~~~~~ 332 (459)
T TIGR00860 306 YFAVCMAFVFLALLETAFVNYVHHKDP 332 (459)
T ss_pred HHHHHHHHHHHHHHHHHhheeEEccCC
Confidence 999999999999999999987776643
No 5
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.88 E-value=4.9e-25 Score=160.20 Aligned_cols=83 Identities=31% Similarity=0.576 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6972 22 VFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNY 101 (133)
Q Consensus 22 ~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~~~~~c~~~v~~alle~~~V~~ 101 (133)
+|+||++++++||++||+|+|+.+||+++|+|++|+++++...+++.+|++||.+.+|.|+.+|+++++.+++|+++|++
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~ 80 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence 58999999999999999999996699999999999999999999999999999999999999999999999999999987
Q ss_pred hcc
Q psy6972 102 VGR 104 (133)
Q Consensus 102 ~~~ 104 (133)
..+
T Consensus 81 ~~~ 83 (237)
T PF02932_consen 81 NIH 83 (237)
T ss_dssp HHH
T ss_pred hhc
Confidence 663
No 6
>KOG3646|consensus
Probab=99.77 E-value=2.4e-19 Score=149.08 Aligned_cols=104 Identities=21% Similarity=0.303 Sum_probs=99.5
Q ss_pred cceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhH
Q psy6972 2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNV 80 (133)
Q Consensus 2 ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~ 80 (133)
|++++|.++++||..||.+|+++||+++.+++..+|-+|||+ |||+++++|.+|+.++|...++++.|++| .+|++++
T Consensus 222 Y~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~-gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~ 300 (486)
T KOG3646|consen 222 YPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA-GEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGA 300 (486)
T ss_pred cceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc-cceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHH
Confidence 889999999999999999999999999999999999999999 99999999999999999999999999999 7999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhhcccC
Q psy6972 81 WDGVCMCFIYASLLEFVCV-NYVGRKR 106 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V-~~~~~~~ 106 (133)
||..|+..+.+|++-+++| |++.|.-
T Consensus 301 fFsc~m~iv~~SvvfTv~vLn~h~R~p 327 (486)
T KOG3646|consen 301 FFSCCMFIVAASVVFTVIVLNLHHRTP 327 (486)
T ss_pred HHHHHHHHHHhhheeEEEEEeeeccCc
Confidence 9999999999999988887 8877753
No 7
>KOG3645|consensus
Probab=99.73 E-value=2.4e-18 Score=144.61 Aligned_cols=106 Identities=18% Similarity=0.326 Sum_probs=99.6
Q ss_pred cceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhhH
Q psy6972 2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMNV 80 (133)
Q Consensus 2 ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id~ 80 (133)
|+.+.+.+++||+|.||.+++++||+++.+++.++||+|++.-.+|+++|++++|+++++...+++.+|++|. +|.+++
T Consensus 226 ~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts~~iPLig~ 305 (449)
T KOG3645|consen 226 YSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTSSVIPLIGK 305 (449)
T ss_pred eeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCccCcchHHHH
Confidence 8899999999999999999999999999999999999998885699999999999999999999999999995 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCc
Q psy6972 81 WDGVCMCFIYASLLEFVCVNYVGRKRP 107 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V~~~~~~~~ 107 (133)
|+.++++++.++++.++++..+.++.+
T Consensus 306 y~~~~m~~~~~sv~~tv~i~~~~~~~~ 332 (449)
T KOG3645|consen 306 YLLFTMVLVTISVVVTVVILNLHHRSP 332 (449)
T ss_pred HHHHHHHHHHHHHHHheeEEeeecccC
Confidence 999999999999999999976666543
No 8
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=53.96 E-value=3.6 Score=31.17 Aligned_cols=10 Identities=30% Similarity=1.009 Sum_probs=8.4
Q ss_pred HHHhhhcccc
Q psy6972 31 TSSFITFWLE 40 (133)
Q Consensus 31 ilSw~sFwi~ 40 (133)
.+.|.+||+.
T Consensus 16 ~~Gwi~FW~Q 25 (183)
T PF12263_consen 16 RLGWIGFWIQ 25 (183)
T ss_pred HHHHHHHHHH
Confidence 5789999976
No 9
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=51.08 E-value=20 Score=24.14 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=12.6
Q ss_pred cchhhHHHH-HHHHHHHHHHHH
Q psy6972 75 LTAMNVWDG-VCMCFIYASLLE 95 (133)
Q Consensus 75 ~~~id~~~~-~c~~~v~~alle 95 (133)
-+-+|+|+. +|.+|+++.++-
T Consensus 30 ~~~Lgm~~lvI~~iFil~Vilw 51 (94)
T PF05393_consen 30 WPNLGMWFLVICGIFILLVILW 51 (94)
T ss_pred CCccchhHHHHHHHHHHHHHHH
Confidence 345666544 677777666554
No 10
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=45.63 E-value=43 Score=26.20 Aligned_cols=49 Identities=6% Similarity=0.153 Sum_probs=34.4
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccCCCC
Q psy6972 69 LPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGE 117 (133)
Q Consensus 69 lP~~sy~~~id~~~~~c~~~v~~alle~~~V~~~~~~~~~~~~~~~~~~ 117 (133)
.|.....+..++.++++.+..++-++-|+.+..++++++++..++.|..
T Consensus 180 ~~~~~~~~~~~~~i~v~~~vl~lpv~FY~~s~~~~~~~~r~l~~~~r~~ 228 (237)
T PF09777_consen 180 VPCKDEVPSETAVIAVSVFVLFLPVLFYLSSYLHSERKKRKLILPKRLK 228 (237)
T ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHhheeeeccccccccccCccc
Confidence 4666666767777777777777888888888877877766655554444
No 11
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=39.65 E-value=53 Score=18.48 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy6972 82 DGVCMCFIYASLLEFVCVN 100 (133)
Q Consensus 82 ~~~c~~~v~~alle~~~V~ 100 (133)
+...|+++|++++.|.+.+
T Consensus 19 F~l~mi~vFi~li~ytl~t 37 (38)
T PF09125_consen 19 FALAMILVFIALIGYTLAT 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4566788888888876653
No 12
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=38.05 E-value=39 Score=24.51 Aligned_cols=58 Identities=9% Similarity=-0.031 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhHHHHHHHH
Q psy6972 26 GIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMC 87 (133)
Q Consensus 26 s~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~~~~~c~~ 87 (133)
...+++..|+.++..... .+|+.+..+..+...++... .-+..++..++.+|+++.+.
T Consensus 98 v~~i~i~~wi~~~f~g~v-v~klPFpl~~~f~~~~qrgl---~~~d~~~~s~i~wYfL~s~~ 155 (168)
T PF01956_consen 98 VPQIPIFYWINYFFSGFV-VAKLPFPLTGRFKSMLQRGL---EGLDVSYVSSISWYFLCSFG 155 (168)
T ss_pred HHHHHHHHHHHHHhhhcc-eEEeeccccHHHhHHhhcCC---CCCcccHhHHHHHHHHHHHH
Confidence 336667888888887544 57777777666554443332 23344577888888876654
No 13
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=34.87 E-value=31 Score=27.43 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=48.8
Q ss_pred EEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCC--ceeeeeeeeeeeeeecc-ccccCCCCcc-ccchhhH
Q psy6972 5 LKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPA--RVMIGVTTMLNFFTTSN-GFRSTLPVVS-NLTAMNV 80 (133)
Q Consensus 5 l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~--Rv~l~it~lLt~~~~~~-~~~~~lP~~s-y~~~id~ 80 (133)
..+.++++|..+--.+-+++= .++..++-+.++..-..... ++.....+.++...|.. .+++.+|-.+ .-.++|.
T Consensus 154 ~~~~i~l~Rs~~~~~F~~~i~-~vm~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~iD~ 232 (256)
T PF14494_consen 154 DGVDITLKRSRGVLFFALFIC-LVMWALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPLRNILPGAPPIGSWIDF 232 (256)
T ss_pred eeEEEEEEccCcceehHHHHH-HHHHHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhHhccCCCCCCCcceEee
Confidence 567888999887666544332 22333444444443322211 23333333333333333 3688899887 6788887
Q ss_pred HH-HHHHHHHHHHHHHHh
Q psy6972 81 WD-GVCMCFIYASLLEFV 97 (133)
Q Consensus 81 ~~-~~c~~~v~~alle~~ 97 (133)
.. +.+++.+.+|++-++
T Consensus 233 ~~vlW~~i~l~~~m~~~v 250 (256)
T PF14494_consen 233 AGVLWVLIALVASMVLYV 250 (256)
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 43 345555555555443
No 14
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=33.81 E-value=61 Score=24.98 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=14.1
Q ss_pred hhcccCcccccccCCCCCC--cccCCcccc
Q psy6972 101 YVGRKRPLHNVVYRPGENP--VTQTFQRNT 128 (133)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 128 (133)
++..||..++.+.|-+|.. +-++++.||
T Consensus 123 ~~~~Rrs~~~~~~rl~Ee~~~vEng~h~n~ 152 (202)
T PF06365_consen 123 CCHQRRSWSKKGQRLGEELYTVENGYHDNP 152 (202)
T ss_pred HhhhhccCCcchhhhccCceecccCccCCc
Confidence 4445554444444555533 455655554
No 15
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=33.80 E-value=46 Score=21.68 Aligned_cols=23 Identities=17% Similarity=0.645 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc
Q psy6972 83 GVCMCFIYASLLEFVCVNYVGRK 105 (133)
Q Consensus 83 ~~c~~~v~~alle~~~V~~~~~~ 105 (133)
..|+-|..+..+|+.+..+..||
T Consensus 54 ~FClWFLlLGaiEy~viRfiwrR 76 (82)
T PF06643_consen 54 VFCLWFLLLGAIEYFVIRFIWRR 76 (82)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46888888999999999998776
No 16
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.30 E-value=27 Score=24.11 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhcc
Q psy6972 23 FIPGIILVTSSFITFW 38 (133)
Q Consensus 23 ~lPs~livilSw~sFw 38 (133)
.+|=. +.++||++|-
T Consensus 84 ~LPW~-LL~lSW~gF~ 98 (103)
T PF11169_consen 84 WLPWG-LLVLSWIGFI 98 (103)
T ss_pred chhHH-HHHHHHHHHH
Confidence 45654 6679999983
No 17
>PHA03290 envelope glycoprotein I; Provisional
Probab=27.29 E-value=82 Score=26.29 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccCCCCCCc
Q psy6972 77 AMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120 (133)
Q Consensus 77 ~id~~~~~c~~~v~~alle~~~V~~~~~~~~~~~~~~~~~~~~~ 120 (133)
++-+.=+.|.+++.++++-.++.+...|+--++++.+||++..+
T Consensus 273 ~~ivipi~~~llilla~i~~i~~~~~Rr~s~~~r~iyrp~~~~~ 316 (357)
T PHA03290 273 FLIAIPITASLLIILAIIIVITIGIKRRRSIEKHKIYRPKRKKE 316 (357)
T ss_pred EEEEehHHHHHHHHHHHHHHHHhhhhhhhhcccCceecCCCcch
Confidence 33344456778888888877666665555344566677766443
No 18
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.11 E-value=62 Score=22.90 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=4.6
Q ss_pred hhhhhcccCcc
Q psy6972 98 CVNYVGRKRPL 108 (133)
Q Consensus 98 ~V~~~~~~~~~ 108 (133)
++.|+.||+.|
T Consensus 83 li~y~irR~~K 93 (122)
T PF01102_consen 83 LISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHS-
T ss_pred HHHHHHHHHhc
Confidence 34455454433
No 19
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=25.82 E-value=1.4e+02 Score=16.96 Aligned_cols=24 Identities=8% Similarity=0.297 Sum_probs=15.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHh
Q psy6972 74 NLTAMNVWDGVCMCFIYASLLEFV 97 (133)
Q Consensus 74 y~~~id~~~~~c~~~v~~alle~~ 97 (133)
.++.+|.|+.+--.+.|+.++..+
T Consensus 3 ~ltl~dfylc~l~~llflv~imli 26 (43)
T PF11395_consen 3 HLTLFDFYLCFLSFLLFLVIIMLI 26 (43)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHH
Confidence 367899998876555555555433
No 20
>KOG4812|consensus
Probab=23.41 E-value=1e+02 Score=24.57 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhccccC-------CCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhHHHHHHHHHHHHHHHHHhh
Q psy6972 26 GIILVTSSFITFWLEW-------NAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVC 98 (133)
Q Consensus 26 s~livilSw~sFwi~~-------~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~~~~~c~~~v~~alle~~~ 98 (133)
.++..+.-|++|.+.- .-.|++.++|.+.+= +...++.+--..||.-. ..|+...+++.-+.+.--.+
T Consensus 167 f~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~-q~wLwwi~~vlG~ll~lr~~ 241 (262)
T KOG4812|consen 167 FIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNG-QYWLWWIFLVLGLLLFLRGF 241 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeeccccccccccc-chHHHHHHHHHHHHHHHHHH
Confidence 3445568898887642 123677888766332 44444333333334322 35655555555555555667
Q ss_pred hhhhcccCccc
Q psy6972 99 VNYVGRKRPLH 109 (133)
Q Consensus 99 V~~~~~~~~~~ 109 (133)
++|+.-||.++
T Consensus 242 i~YikVrrm~~ 252 (262)
T KOG4812|consen 242 INYIKVRRMEE 252 (262)
T ss_pred HhHHHHhhHHH
Confidence 77776666443
No 21
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=22.85 E-value=98 Score=26.19 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=21.9
Q ss_pred chhhHHHHHHHHHHHHHhhhccccCCCC
Q psy6972 17 FYFTTVFIPGIILVTSSFITFWLEWNAV 44 (133)
Q Consensus 17 ~y~~~~~lPs~livilSw~sFwi~~~~~ 44 (133)
-.++.+.+=.+|+++|-|.+||.+++..
T Consensus 14 aiiiSv~LHvlLi~lLi~gs~~~~~~~~ 41 (387)
T PRK09510 14 AIIISVVLHIILFALLIWSSFDENIEAS 41 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 3467778888899999999999776553
No 22
>PHA02902 putative IMV membrane protein; Provisional
Probab=21.76 E-value=2.3e+02 Score=18.03 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q psy6972 77 AMNVWDGVCMCFIYASLLEFV 97 (133)
Q Consensus 77 ~id~~~~~c~~~v~~alle~~ 97 (133)
++|-|.+...+.+..+++-++
T Consensus 2 ~~dtfvi~~v~v~Ivclliya 22 (70)
T PHA02902 2 AIDTFVILAVIVIIFCLLIYA 22 (70)
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 356666554444444444443
No 23
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=20.18 E-value=2.3e+02 Score=18.36 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=22.8
Q ss_pred hHHHHHHH-HHHHHHHHHHhhhhhhcccCcccccc
Q psy6972 79 NVWDGVCM-CFIYASLLEFVCVNYVGRKRPLHNVV 112 (133)
Q Consensus 79 d~~~~~c~-~~v~~alle~~~V~~~~~~~~~~~~~ 112 (133)
..|+..|+ ..+.+.++-..+|+++.+-.+++..+
T Consensus 44 lWF~~SCi~~~il~~~l~~~~vk~~Fkd~~Ld~~~ 78 (80)
T PF06196_consen 44 LWFFYSCIGGPILFIILVWLMVKFFFKDIPLDDEE 78 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Confidence 45666777 44555666777888888877765443
Done!