Query psy6972
Match_columns 133
No_of_seqs 132 out of 725
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:31:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksr_A Neuronal acetylcholine 100.0 6.8E-31 2.3E-35 193.7 1.6 107 1-108 14-121 (164)
2 3rhw_A Avermectin-sensitive gl 100.0 1.9E-30 6.5E-35 209.1 3.1 107 1-107 199-305 (347)
3 2lkg_A Acetylcholine receptor; 100.0 4.1E-31 1.4E-35 190.5 -4.9 101 2-103 36-138 (140)
4 2lly_A Neuronal acetylcholine 99.9 9E-29 3.1E-33 177.6 2.1 98 10-108 2-100 (137)
5 2bg9_E Acetylcholine receptor 99.9 5.8E-29 2E-33 202.3 -0.3 106 1-106 197-303 (370)
6 3tlw_A GLR4197 protein, GLIC; 99.9 2.9E-28 9.9E-33 194.3 3.7 106 1-108 184-289 (321)
7 2bg9_A Acetylcholine receptor 99.9 9E-29 3.1E-33 201.2 0.1 106 1-107 197-303 (370)
8 3rqw_A ELIC pentameric ligand 99.9 3.3E-28 1.1E-32 194.0 2.8 106 1-108 187-292 (322)
9 2bg9_C Acetylcholine receptor 99.9 3E-28 1E-32 198.1 0.3 103 1-104 196-300 (369)
10 2bg9_B Acetylcholine receptor 99.9 5.7E-28 1.9E-32 196.6 0.4 103 1-104 194-298 (370)
11 4aq5_E Acetylcholine receptor 99.9 1.2E-27 4.2E-32 201.1 -0.0 106 1-106 204-310 (488)
12 4aq5_A Acetylcholine receptor 99.9 1.8E-27 6.2E-32 198.9 0.3 104 1-105 221-325 (461)
13 4aq5_B Acetylcholine receptor 99.9 3E-27 1E-31 198.9 1.6 104 1-105 227-331 (493)
14 4aq5_C Acetylcholine receptor 99.9 7.8E-27 2.7E-31 197.6 1.3 104 1-105 232-336 (522)
15 1oed_A Acetylcholine receptor 99.9 3.1E-24 1.1E-28 165.3 -2.8 89 15-104 1-91 (227)
16 1oed_B Acetylcholine receptor 99.9 7.6E-24 2.6E-28 165.1 -3.2 89 15-104 1-91 (250)
17 1oed_E Acetylcholine receptor 99.9 9.1E-24 3.1E-28 165.5 -2.8 90 15-104 1-92 (260)
18 1oed_C Acetylcholine receptor 99.8 5.9E-23 2E-27 160.9 -2.5 89 15-104 1-91 (260)
19 1vry_A Glycine receptor alpha- 99.8 6.5E-22 2.2E-26 128.6 -1.4 64 45-108 2-65 (76)
20 1mot_A Glycine receptor alpha- 96.8 5.8E-05 2E-09 39.3 -2.1 27 45-71 2-28 (28)
No 1
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.96 E-value=6.8e-31 Score=193.75 Aligned_cols=107 Identities=17% Similarity=0.292 Sum_probs=91.3
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhh
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMN 79 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id 79 (133)
+|+++++++++||+++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| |+|++|
T Consensus 14 ~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~vPlI~ 92 (164)
T 2ksr_A 14 GTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVG 92 (164)
T ss_dssp -----------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTTHHHHH
T ss_pred CcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCcccCCHHH
Confidence 4899999999999999999999999999999999999999998 99999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCcc
Q psy6972 80 VWDGVCMCFIYASLLEFVCVNYVGRKRPL 108 (133)
Q Consensus 80 ~~~~~c~~~v~~alle~~~V~~~~~~~~~ 108 (133)
+|+.+|++++++|++|+++|..+.+|.+.
T Consensus 93 ~y~~~~m~~v~~sll~tv~Vl~~~~r~~~ 121 (164)
T 2ksr_A 93 KYLMFTMVLVTFSIVTSVCVLNVHHRSPT 121 (164)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 99999999999999999999666655544
No 2
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.96 E-value=1.9e-30 Score=209.05 Aligned_cols=107 Identities=42% Similarity=0.850 Sum_probs=103.5
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 80 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~ 80 (133)
+|+++.+.++++|+++||++++++||++++++||++||+|+|+.+||+++|+|++|++++++..+++.+|++||+|+||+
T Consensus 199 ~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~ 278 (347)
T 3rhw_A 199 IYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDV 278 (347)
T ss_dssp EECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHH
T ss_pred ceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCCCccceeHHHH
Confidence 38999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCc
Q psy6972 81 WDGVCMCFIYASLLEFVCVNYVGRKRP 107 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V~~~~~~~~ 107 (133)
|+++|++|+++|++|+++|+++.++.+
T Consensus 279 ~~~~~~~~v~~slle~~~v~~l~~~~~ 305 (347)
T 3rhw_A 279 WIGACMTFIFCALLEFALVNHIANAGT 305 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999999888764
No 3
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.95 E-value=4.1e-31 Score=190.46 Aligned_cols=101 Identities=11% Similarity=0.047 Sum_probs=96.5
Q ss_pred cceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhH
Q psy6972 2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNV 80 (133)
Q Consensus 2 ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~ 80 (133)
|+++++.+++||+++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| ++|++|+
T Consensus 36 y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vPlI~~ 114 (140)
T 2lkg_A 36 LIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPLIGK 114 (140)
T ss_dssp HHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHHHHHH
T ss_pred EEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCccccccHHHH
Confidence 678889999999999999999999999999999999999997 99999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhhc
Q psy6972 81 WDGVCMCFIYASLLEFVCV-NYVG 103 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V-~~~~ 103 (133)
|+..|++++++|++|+++| |+..
T Consensus 115 y~~~~~~~v~~sll~tv~Vln~~~ 138 (140)
T 2lkg_A 115 YMLFTKEFVESSIKITEEVINTHH 138 (140)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhheeeec
Confidence 9999999999999999988 5543
No 4
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.94 E-value=9e-29 Score=177.62 Aligned_cols=98 Identities=16% Similarity=0.238 Sum_probs=91.1
Q ss_pred EEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHH
Q psy6972 10 IFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCF 88 (133)
Q Consensus 10 ~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~ 88 (133)
++||+++||+.|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| |+|++|+|+..|+++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~ 80 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF 80 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998 99999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCcc
Q psy6972 89 IYASLLEFVCVNYVGRKRPL 108 (133)
Q Consensus 89 v~~alle~~~V~~~~~~~~~ 108 (133)
+++|++|+++|..+.+|.+.
T Consensus 81 v~~sl~~tv~V~~~~~r~~~ 100 (137)
T 2lly_A 81 VTLSIVITVFVLNVHHRSPE 100 (137)
T ss_dssp HHHHHHHHHHHHHCCSSCSS
T ss_pred HHHHhhhhhhhhhHHhcCCc
Confidence 99999999999666555543
No 5
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.94 E-value=5.8e-29 Score=202.27 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=100.5
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN 79 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id 79 (133)
+|++++++++++|+++||++++++||++++++||++||+|+|+.+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus 197 ~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~ 276 (370)
T 2bg9_E 197 DFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIG 276 (370)
T ss_dssp CCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCChHH
Confidence 48999999999999999999999999999999999999999988999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccC
Q psy6972 80 VWDGVCMCFIYASLLEFVCVNYVGRKR 106 (133)
Q Consensus 80 ~~~~~c~~~v~~alle~~~V~~~~~~~ 106 (133)
+|+.+|++++++|++|+++|..+..|.
T Consensus 277 ~~~~~~~~~v~~sll~~v~v~~~~~r~ 303 (370)
T 2bg9_E 277 KYLIFVMFVSLVIVTNCVIVLNVSLRT 303 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHhhheeeeccC
Confidence 999999999999999999996555444
No 6
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.94 E-value=2.9e-28 Score=194.32 Aligned_cols=106 Identities=18% Similarity=0.273 Sum_probs=100.3
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 80 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~ 80 (133)
+|+++.+++++||+++||++++++||++++++||++|| |++ .+||+++|+|++|++++++..+++.+|++||+|+||+
T Consensus 184 ~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~-~~~Rv~l~it~lL~~t~~~~~~~~~lP~~s~vp~i~~ 261 (321)
T 3tlw_A 184 LESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STS-YEANVTLVVSTLIAHIAFNILVETCLPKTPYMTYTGA 261 (321)
T ss_dssp EEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHH
T ss_pred ceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCC-CCCcEEEEhhHHHHHHHHHHHHHhhCCCccccHHHHH
Confidence 48999999999999999999999999999999999999 554 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCcc
Q psy6972 81 WDGVCMCFIYASLLEFVCVNYVGRKRPL 108 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V~~~~~~~~~ 108 (133)
|+.+|++++++|++|+++|+++.++.+.
T Consensus 262 ~~~~~~~~v~~sll~~v~v~~l~~~~~~ 289 (321)
T 3tlw_A 262 IIFMIYLFYFVAVIEVTVQHYLKVESQP 289 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCcc
Confidence 9999999999999999999988876643
No 7
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.94 E-value=9e-29 Score=201.17 Aligned_cols=106 Identities=16% Similarity=0.318 Sum_probs=100.0
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN 79 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id 79 (133)
+|++++++++++|+++||++++++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus 197 ~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~ 275 (370)
T 2bg9_A 197 PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIG 275 (370)
T ss_dssp CCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred CeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCHHH
Confidence 3899999999999999999999999999999999999999998 899999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCc
Q psy6972 80 VWDGVCMCFIYASLLEFVCVNYVGRKRP 107 (133)
Q Consensus 80 ~~~~~c~~~v~~alle~~~V~~~~~~~~ 107 (133)
+|+.+|++|+++|++|+++|..+.+|.+
T Consensus 276 ~~~~~~~~~v~~sl~~~~~v~~~~~r~~ 303 (370)
T 2bg9_A 276 KYMLFTMIFVISSIIVTVVVINTHHRSP 303 (370)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 9999999999999999999965555443
No 8
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.94 E-value=3.3e-28 Score=194.04 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=101.1
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 80 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~ 80 (133)
+|+++.+++++||+++||++++++||++++++||++||+| ++ +||+++|+|++|+++++...+++.+|++||+|+||+
T Consensus 187 ~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~~-~~Rv~l~it~lL~~~~~~~~~~~~lP~~s~vp~i~~ 264 (322)
T 3rqw_A 187 EFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-SF-SERLQTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQ 264 (322)
T ss_dssp EEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-SH-HHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCCHHHH
T ss_pred CeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-CC-CCcEEEEEehHHHHHHHHHHHhhhCCCccchHHHHH
Confidence 3889999999999999999999999999999999999999 54 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCcc
Q psy6972 81 WDGVCMCFIYASLLEFVCVNYVGRKRPL 108 (133)
Q Consensus 81 ~~~~c~~~v~~alle~~~V~~~~~~~~~ 108 (133)
|+.+|++++++|++|+++|+++.++.+.
T Consensus 265 ~~~~~~~~v~~sll~~~~v~~l~~~~~~ 292 (322)
T 3rqw_A 265 MIIAGYGSIFAAILLIIFAHHRQANGVE 292 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999988876654
No 9
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.93 E-value=3e-28 Score=198.13 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=97.6
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN 79 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id 79 (133)
+|++++++++++|+++||++++++||++++++||++||+|+| .+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus 196 ~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~ 274 (369)
T 2bg9_C 196 NYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIG 274 (369)
T ss_dssp CCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred CccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCccCccHHH
Confidence 489999999999999999999999999999999999999999 5999999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhhcc
Q psy6972 80 VWDGVCMCFIYASLLEFVCV-NYVGR 104 (133)
Q Consensus 80 ~~~~~c~~~v~~alle~~~V-~~~~~ 104 (133)
+|+.+|++++++|++|+++| |++.|
T Consensus 275 ~~~~~~~~~v~~sll~~v~v~~~~~r 300 (369)
T 2bg9_C 275 KYLMFIMSLVTGVVVNCGIVLNFHFR 300 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhheeeeecc
Confidence 99999999999999999887 55443
No 10
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.93 E-value=5.7e-28 Score=196.56 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=97.7
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN 79 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id 79 (133)
+|++++++++++|+++||++++++||++++++||++||+|+| .+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus 194 ~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~ 272 (370)
T 2bg9_B 194 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETSLSVPIII 272 (370)
T ss_dssp SBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCS
T ss_pred CccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHHHHhhCCCccccccHHH
Confidence 489999999999999999999999999999999999999999 5999999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhhcc
Q psy6972 80 VWDGVCMCFIYASLLEFVCV-NYVGR 104 (133)
Q Consensus 80 ~~~~~c~~~v~~alle~~~V-~~~~~ 104 (133)
+|+.+|++++++|++|+++| |++.|
T Consensus 273 ~~~~~~~~~v~~sll~~v~v~~~~~r 298 (370)
T 2bg9_B 273 SYLMFIMILVAFSVILSVVVLNLHHR 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999887 55443
No 11
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.93 E-value=1.2e-27 Score=201.07 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=100.7
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN 79 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id 79 (133)
+|++++++++++|+++||++|+++||++++++||++||+|+|+.+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus 204 ~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~ 283 (488)
T 4aq5_E 204 DFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIG 283 (488)
T ss_dssp CCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred CcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccHHH
Confidence 48999999999999999999999999999999999999999977999999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccC
Q psy6972 80 VWDGVCMCFIYASLLEFVCVNYVGRKR 106 (133)
Q Consensus 80 ~~~~~c~~~v~~alle~~~V~~~~~~~ 106 (133)
+|+++|++++++|++|+++|..+..|.
T Consensus 284 ~y~~~~m~lv~~Sll~tv~Vlnl~~r~ 310 (488)
T 4aq5_E 284 KYLIFVMFVSLVIVTNCVIVLNVSLRT 310 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHhhEEEEEccC
Confidence 999999999999999999996665543
No 12
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.93 E-value=1.8e-27 Score=198.91 Aligned_cols=104 Identities=15% Similarity=0.297 Sum_probs=99.3
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhh
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMN 79 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id 79 (133)
+|++++++++++|+++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| |+|+||
T Consensus 221 ~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s-~eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~ 299 (461)
T 4aq5_A 221 PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIG 299 (461)
T ss_dssp CCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred CcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccc-cceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHH
Confidence 4899999999999999999999999999999999999999999 59999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972 80 VWDGVCMCFIYASLLEFVCVNYVGRK 105 (133)
Q Consensus 80 ~~~~~c~~~v~~alle~~~V~~~~~~ 105 (133)
+|+.+|++++++|++|+++|.++.+|
T Consensus 300 ~y~~~~m~~v~~sll~tv~Vl~l~~r 325 (461)
T 4aq5_A 300 KYMLFTMIFVISSIIVTVVVINTHHR 325 (461)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhheeeecc
Confidence 99999999999999999999665544
No 13
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.93 E-value=3e-27 Score=198.92 Aligned_cols=104 Identities=17% Similarity=0.274 Sum_probs=99.3
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN 79 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id 79 (133)
+|++++++++++|+++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus 227 ~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~LP~tS~~vPlI~ 305 (493)
T 4aq5_B 227 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADKVPETSLSVPIII 305 (493)
T ss_dssp SBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHHHHHHTTTTTTSSCCCC
T ss_pred CccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHHHHhcCCccccCCCchH
Confidence 4899999999999999999999999999999999999999997 999999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972 80 VWDGVCMCFIYASLLEFVCVNYVGRK 105 (133)
Q Consensus 80 ~~~~~c~~~v~~alle~~~V~~~~~~ 105 (133)
+|+.+|++++++|++|+++|.++..|
T Consensus 306 ~y~~~~m~~v~lsll~tv~Vl~l~~r 331 (493)
T 4aq5_B 306 SYLMFIMILVAFSVILSVVVLNLHHR 331 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhheeeecc
Confidence 99999999999999999999665544
No 14
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.92 E-value=7.8e-27 Score=197.61 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=99.2
Q ss_pred CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972 1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN 79 (133)
Q Consensus 1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id 79 (133)
+|++++++++++|+++||++|+++||++++++||++||+|+| .+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus 232 ~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPlI~ 310 (522)
T 4aq5_C 232 NYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIG 310 (522)
T ss_dssp CCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCH
T ss_pred CcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHHHHHhcCCcccCCccHHH
Confidence 489999999999999999999999999999999999999999 5999999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972 80 VWDGVCMCFIYASLLEFVCVNYVGRK 105 (133)
Q Consensus 80 ~~~~~c~~~v~~alle~~~V~~~~~~ 105 (133)
+|+++|++++++|++|+++|..+..|
T Consensus 311 ~y~~~~m~lv~lSll~tviVlnl~~r 336 (522)
T 4aq5_C 311 KYLMFIMSLVTGVVVNCGIVLNFHFR 336 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHheEEEEEcc
Confidence 99999999999999999999665544
No 15
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.86 E-value=3.1e-24 Score=165.28 Aligned_cols=89 Identities=17% Similarity=0.298 Sum_probs=85.2
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972 15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL 93 (133)
Q Consensus 15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al 93 (133)
|+||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| ++|++|+|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999 99999999999999999999999999999 99999999999999999999
Q ss_pred HHHhhh-hhhcc
Q psy6972 94 LEFVCV-NYVGR 104 (133)
Q Consensus 94 le~~~V-~~~~~ 104 (133)
+|+++| |++.|
T Consensus 80 ~~tv~vln~~~r 91 (227)
T 1oed_A 80 IITVVVINTHHR 91 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc
Confidence 999999 55544
No 16
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.85 E-value=7.6e-24 Score=165.15 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=85.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972 15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL 93 (133)
Q Consensus 15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al 93 (133)
++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| ++|++|+|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999 99999999999999999999999999999 99999999999999999999
Q ss_pred HHHhhh-hhhcc
Q psy6972 94 LEFVCV-NYVGR 104 (133)
Q Consensus 94 le~~~V-~~~~~ 104 (133)
+|+++| |++.|
T Consensus 80 ~~tv~Vln~~~r 91 (250)
T 1oed_B 80 ILSVVVLNLHHR 91 (250)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHhheeeeecc
Confidence 999999 55544
No 17
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.85 E-value=9.1e-24 Score=165.53 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=85.5
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972 15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL 93 (133)
Q Consensus 15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al 93 (133)
++||++|+++||++++++||++||+|+|+.+||+++|+|++|+++++...+++.+|++| |+|+||+|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl 80 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999996699999999999999999999999999999 99999999999999999999
Q ss_pred HHHhhh-hhhcc
Q psy6972 94 LEFVCV-NYVGR 104 (133)
Q Consensus 94 le~~~V-~~~~~ 104 (133)
+++++| |++.|
T Consensus 81 ~~tv~vln~~~r 92 (260)
T 1oed_E 81 MNCVIVLNVSLR 92 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhheeeeecc
Confidence 999987 66554
No 18
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.84 E-value=5.9e-23 Score=160.92 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=84.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972 15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL 93 (133)
Q Consensus 15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al 93 (133)
++||++|+++||+++++++|++||+|+|+ +||+++|+|++|++++|...+++.+|++| ++|+||+|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~ 79 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999996 99999999999999999999999999999 99999999999999999999
Q ss_pred HHHhhh-hhhcc
Q psy6972 94 LEFVCV-NYVGR 104 (133)
Q Consensus 94 le~~~V-~~~~~ 104 (133)
+++++| |++.|
T Consensus 80 ~~tv~vl~~~~r 91 (260)
T 1oed_C 80 VNCGIVLNFHFR 91 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHheeeeecc
Confidence 999999 55543
No 19
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=99.81 E-value=6.5e-22 Score=128.58 Aligned_cols=64 Identities=45% Similarity=0.867 Sum_probs=58.6
Q ss_pred CCceeeeeeeeeeeeeeccccccCCCCccccchhhHHHHHHHHHHHHHHHHHhhhhhhcccCcc
Q psy6972 45 PARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPL 108 (133)
Q Consensus 45 ~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~~~~~c~~~v~~alle~~~V~~~~~~~~~ 108 (133)
++|+++|+|++|+++++....++++|++||++++|+|+++|++|+|+|++|+++|||+.|++++
T Consensus 2 paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~~~ 65 (76)
T 1vry_A 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKKKK 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6899999999999999999999999999999999999999999999999999999999887754
No 20
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=96.78 E-value=5.8e-05 Score=39.34 Aligned_cols=27 Identities=52% Similarity=0.792 Sum_probs=25.4
Q ss_pred CCceeeeeeeeeeeeeeccccccCCCC
Q psy6972 45 PARVMIGVTTMLNFFTTSNGFRSTLPV 71 (133)
Q Consensus 45 ~~Rv~l~it~lLt~~~~~~~~~~~lP~ 71 (133)
++|+++|++++|+++.+....+..+|+
T Consensus 2 paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 2 PARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 789999999999999999999988986
Done!