RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6972
         (133 letters)



>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 63.7 bits (154), Expect = 8e-14
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 17  FYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NL 75
           FY   +  P +++ +   + ++L   A   +  + ++ +L            +P  S N+
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 76  TAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 107
             +  +    M      ++  V V  V  + P
Sbjct: 63  PLIGKYLIFVMFVSMLIVMNCVIVLNVSLRTP 94


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 227

 Score = 61.3 bits (148), Expect = 5e-13
 Identities = 16/118 (13%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 17  FYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NL 75
           ++   V IP ++    + + F+L  ++   ++ + ++ +L+           +P  S  +
Sbjct: 3   YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 76  TAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQTFQRNTYHKSM 133
             +  +    M F+ +S++  V V     + P  + + +        T     +  +M
Sbjct: 62  PLIGKYMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTM 119


>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 54.8 bits (131), Expect = 1e-10
 Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 17  FYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NL 75
           FY      P +++   + + F+L   +   ++   ++ +L            LP  +  +
Sbjct: 3   FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 76  TAMNVWDGVCMCFIYASLLEFVCVNYV 102
             +  +    M  +   ++    V   
Sbjct: 62  PLIGKYLMFIMSLVTGVIVNCGIVLNF 88


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 52.8 bits (126), Expect = 7e-10
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 17  FYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NL 75
           FY     IP I++   + + F+L  +A   ++ + ++ +L            +P  S ++
Sbjct: 3   FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 76  TAMNVWDGVCMCFIYASLLEFVCVNYV 102
             +  +    M  +  S++  V V  +
Sbjct: 62  PIIIRYLMFIMILVAFSVILSVVVLNL 88


>d1p7hl2 b.2.5.3 (L:393-575) T-cell transcription factor NFAT1
           (NFATC), DNA-binding domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 183

 Score = 24.1 bits (52), Expect = 5.6
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 58  FFTTSNGFRSTLPVVSN 74
               S+G   +L   SN
Sbjct: 157 HIPESSGRIVSLQTASN 173


>d1imhc2 b.2.5.3 (C:188-367) T-cell transcription factor NFAT5
           (TONEBP), DNA-binding domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 180

 Score = 23.6 bits (51), Expect = 7.4
 Identities = 4/17 (23%), Positives = 6/17 (35%)

Query: 58  FFTTSNGFRSTLPVVSN 74
                +G   TL   S+
Sbjct: 155 NIMRKDGSTLTLQTPSS 171


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.140    0.455 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,753
Number of extensions: 20600
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 6
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (22.5 bits)