Query psy6973
Match_columns 115
No_of_seqs 114 out of 1292
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:32:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2owa_A Arfgap-like finger doma 100.0 3.5E-33 1.2E-37 200.7 2.3 86 12-98 16-101 (138)
2 2iqj_A Stromal membrane-associ 100.0 8.7E-34 3E-38 202.9 -1.1 91 8-99 3-93 (134)
3 2crr_A Stromal membrane-associ 100.0 2.4E-33 8.2E-38 202.1 0.5 89 10-99 7-95 (141)
4 3dwd_A ADP-ribosylation factor 100.0 1.4E-32 4.6E-37 199.3 1.7 84 14-98 20-103 (147)
5 2crw_A ARF GAP 3, ADP-ribosyla 100.0 6.1E-32 2.1E-36 196.4 2.4 82 16-98 13-95 (149)
6 2olm_A Nucleoporin-like protei 100.0 7.2E-32 2.4E-36 194.2 1.0 83 15-99 8-90 (140)
7 3sub_A ADP-ribosylation factor 100.0 2.1E-31 7.2E-36 195.6 1.2 82 17-98 6-87 (163)
8 2p57_A GTPase-activating prote 100.0 2.5E-31 8.7E-36 192.1 1.1 81 17-98 22-103 (144)
9 3o47_A ADP-ribosylation factor 99.9 8.7E-29 3E-33 195.1 1.6 84 14-98 19-102 (329)
10 3jue_A Arfgap with coiled-coil 99.9 6.8E-29 2.3E-33 199.1 -0.5 85 13-98 26-110 (368)
11 3lju_X ARF-GAP with dual PH do 99.9 6E-28 2.1E-32 195.7 0.3 83 14-98 16-98 (386)
12 1dcq_A PYK2-associated protein 99.9 4.6E-26 1.6E-30 174.5 2.5 79 17-96 2-80 (278)
13 2b0o_E UPLC1; arfgap, structur 99.9 4.9E-26 1.7E-30 176.3 2.2 80 17-97 27-106 (301)
14 3lvq_E ARF-GAP with SH3 domain 99.9 4.8E-26 1.6E-30 186.0 1.4 81 17-98 8-88 (497)
15 2owa_A Arfgap-like finger doma 98.7 3.2E-09 1.1E-13 75.9 0.6 50 51-115 34-84 (138)
16 2iqj_A Stromal membrane-associ 98.6 4.4E-09 1.5E-13 74.8 0.0 50 51-115 25-75 (134)
17 2crr_A Stromal membrane-associ 98.6 5.1E-09 1.8E-13 75.0 -0.8 50 51-115 27-77 (141)
18 3sub_A ADP-ribosylation factor 98.6 8.8E-09 3E-13 75.4 0.4 50 51-115 20-70 (163)
19 3dwd_A ADP-ribosylation factor 98.5 1.4E-08 4.9E-13 73.2 0.2 49 52-115 37-86 (147)
20 2crw_A ARF GAP 3, ADP-ribosyla 98.5 1.3E-08 4.4E-13 73.6 -0.1 49 52-115 28-78 (149)
21 2p57_A GTPase-activating prote 98.4 3.6E-08 1.2E-12 71.0 0.6 50 51-115 35-86 (144)
22 2olm_A Nucleoporin-like protei 98.3 9.1E-08 3.1E-12 68.4 0.7 48 52-115 24-72 (140)
23 3jue_A Arfgap with coiled-coil 98.2 1.3E-07 4.4E-12 75.5 -0.0 49 52-115 44-93 (368)
24 3o47_A ADP-ribosylation factor 98.2 2.7E-07 9.3E-12 72.2 0.6 49 52-115 36-85 (329)
25 3lvq_E ARF-GAP with SH3 domain 98.1 3.4E-07 1.2E-11 74.4 -0.0 49 52-115 22-71 (497)
26 1dcq_A PYK2-associated protein 98.1 5.5E-07 1.9E-11 68.3 -0.0 49 52-115 16-65 (278)
27 2b0o_E UPLC1; arfgap, structur 98.0 7E-07 2.4E-11 68.5 -0.0 49 52-115 41-90 (301)
28 3lju_X ARF-GAP with dual PH do 97.9 1.5E-06 5.3E-11 70.0 0.3 48 52-115 33-81 (386)
29 1gnf_A Transcription factor GA 89.8 0.074 2.5E-06 30.9 0.4 37 31-67 2-39 (46)
30 3dfx_A Trans-acting T-cell-spe 86.5 0.31 1.1E-05 30.1 1.7 38 30-67 4-42 (63)
31 2vut_I AREA, nitrogen regulato 84.9 0.43 1.5E-05 27.2 1.6 31 34-64 2-33 (43)
32 4gat_A Nitrogen regulatory pro 82.1 0.74 2.5E-05 28.5 2.0 38 30-67 6-44 (66)
33 4hc9_A Trans-acting T-cell-spe 79.8 0.3 1E-05 33.2 -0.4 33 32-64 4-37 (115)
34 1u5k_A Hypothetical protein; O 78.8 0.9 3.1E-05 33.5 1.9 32 31-62 148-179 (244)
35 3g9m_A Glucocorticoid receptor 71.1 0.99 3.4E-05 29.2 0.4 30 32-64 1-30 (90)
36 1hcq_A Protein (estrogen recep 67.0 1.6 5.4E-05 28.0 0.7 31 31-64 2-32 (84)
37 2ebl_A COUP transcription fact 66.9 1.6 5.5E-05 28.3 0.7 32 30-64 4-35 (89)
38 2kae_A GATA-type transcription 66.4 2 6.9E-05 26.9 1.0 36 31-67 6-44 (71)
39 1d4u_A Nucleotide excision rep 62.6 1.3 4.3E-05 30.1 -0.5 31 32-62 4-35 (111)
40 2nll_B Protein (thyroid hormon 62.4 1.8 6.2E-05 28.7 0.3 28 34-64 2-29 (103)
41 1dl6_A Transcription factor II 62.2 3.2 0.00011 24.6 1.4 30 32-62 10-39 (58)
42 2han_B Ecdysone receptor; tran 61.2 2.4 8.3E-05 28.8 0.8 30 32-64 7-36 (119)
43 1tjl_A DNAK suppressor protein 60.7 1.4 4.9E-05 31.1 -0.5 33 31-63 109-142 (151)
44 4hc9_A Trans-acting T-cell-spe 60.3 2 6.8E-05 29.1 0.2 38 30-67 56-94 (115)
45 2han_A Protein ultraspiracle; 58.8 2.4 8.1E-05 27.6 0.4 30 32-64 9-38 (93)
46 1r4i_A Androgen receptor; AR, 58.7 1.6 5.4E-05 29.2 -0.5 32 30-64 4-35 (105)
47 1dsz_A RAR-alpha, retinoic aci 57.5 2.6 8.9E-05 27.0 0.4 29 33-64 4-32 (86)
48 2a66_A Orphan nuclear receptor 57.3 1.5 5.1E-05 29.7 -0.8 32 30-64 6-37 (113)
49 1cit_A NGFI-B, protein (orphan 54.9 3.5 0.00012 26.6 0.7 27 35-64 2-28 (89)
50 1kb2_A Vitamin D3 receptor; VD 54.7 2.8 9.4E-05 28.2 0.1 31 31-64 4-34 (110)
51 1ynw_B Retinoic acid receptor 52.8 2.6 8.8E-05 27.8 -0.2 29 33-64 3-31 (99)
52 4hn5_A Glucocorticoid receptor 52.6 3.2 0.00011 28.2 0.2 32 30-64 26-57 (117)
53 4bbr_M Transcription initiatio 51.5 6.1 0.00021 31.0 1.7 29 34-62 22-51 (345)
54 1dsz_B RXR-alpha, retinoic aci 51.1 2.1 7.1E-05 27.4 -0.9 30 32-64 4-33 (85)
55 1a6y_A Orphan nuclear receptor 51.1 3.4 0.00012 26.9 0.2 31 31-64 5-35 (94)
56 3k7a_M Transcription initiatio 49.9 6.1 0.00021 30.8 1.4 31 33-63 21-52 (345)
57 1ffk_W Ribosomal protein L37AE 49.4 14 0.00049 23.1 2.9 41 20-62 14-54 (73)
58 1lo1_A Steroid hormone recepto 46.3 2.6 9E-05 27.7 -1.0 29 33-64 4-32 (98)
59 3dzy_D Peroxisome proliferator 46.1 5.6 0.00019 31.9 0.7 30 32-64 49-78 (419)
60 3cbb_A HNF-4-alpha, hepatocyte 45.9 4.2 0.00015 25.5 -0.0 27 35-64 2-28 (78)
61 3lhn_A Lipoprotein; structural 45.8 4.7 0.00016 27.6 0.2 21 44-64 27-47 (126)
62 2kq9_A DNAK suppressor protein 44.7 3 0.0001 27.7 -0.9 39 21-61 71-110 (112)
63 3k1f_M Transcription initiatio 42.9 11 0.00038 27.8 1.8 29 34-62 22-51 (197)
64 3j21_d 50S ribosomal protein L 39.1 14 0.00048 24.0 1.7 30 31-61 31-77 (89)
65 3j21_g 50S ribosomal protein L 36.8 4.2 0.00015 23.9 -1.0 27 30-62 11-37 (51)
66 2kgo_A Uncharacterized protein 36.8 5.3 0.00018 26.9 -0.7 31 32-62 55-86 (108)
67 2uzg_A Ubiquitin carboxyl-term 36.3 23 0.00078 22.8 2.4 27 32-58 24-53 (97)
68 3dzy_A Retinoic acid receptor 32.7 5.9 0.0002 32.3 -1.2 30 32-64 136-165 (467)
69 3a1b_A DNA (cytosine-5)-methyl 32.1 39 0.0013 24.1 3.2 46 16-61 18-64 (159)
70 1pft_A TFIIB, PFTFIIBN; N-term 31.3 11 0.00039 21.0 0.2 29 33-62 5-33 (50)
71 2ida_A Hypothetical protein; z 29.4 4.8 0.00016 26.8 -1.9 27 30-56 15-45 (102)
72 1k81_A EIF-2-beta, probable tr 28.0 10 0.00035 20.3 -0.4 28 35-62 2-30 (36)
73 3u5e_g 60S ribosomal protein L 28.0 23 0.00078 24.3 1.3 31 31-61 39-86 (121)
74 1vq8_Z 50S ribosomal protein L 27.8 21 0.0007 22.7 1.0 40 21-62 15-54 (83)
75 1zbd_B Rabphilin-3A; G protein 25.7 37 0.0013 23.2 2.1 33 31-63 53-90 (134)
76 3j21_i 50S ribosomal protein L 25.2 53 0.0018 20.9 2.6 39 22-62 24-62 (83)
77 2yho_A E3 ubiquitin-protein li 24.5 49 0.0017 19.9 2.3 42 19-64 8-50 (79)
78 3izc_m 60S ribosomal protein R 24.2 46 0.0016 21.6 2.2 39 22-62 25-63 (92)
79 3iz5_i 60S ribosomal protein L 24.1 41 0.0014 22.9 2.0 31 31-61 39-88 (119)
80 3d00_A Tungsten formylmethanof 23.9 11 0.00038 27.3 -0.9 23 34-61 164-186 (191)
81 2zet_C Melanophilin; complex, 23.7 29 0.001 24.3 1.3 34 32-65 67-105 (153)
82 2pv0_B DNA (cytosine-5)-methyl 21.7 60 0.0021 26.2 2.9 43 18-61 34-78 (386)
83 2g45_A Ubiquitin carboxyl-term 21.2 34 0.0012 23.3 1.2 28 31-58 32-59 (129)
84 2z4i_A Copper homeostasis prot 20.1 19 0.00066 27.1 -0.3 20 45-64 20-39 (233)
No 1
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=3.5e-33 Score=200.73 Aligned_cols=86 Identities=33% Similarity=0.597 Sum_probs=79.4
Q ss_pred ccCCChHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhh
Q psy6973 12 SRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCI 91 (115)
Q Consensus 12 ~~~~~~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~ 91 (115)
.+..++..+++++.|++ .|+|+.|||||+++|+|+|+|||+|||.+|+|+||+||+|||+||||+||.|+++++++|..
T Consensus 16 ~~~~~~~~~~l~~~l~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~ 94 (138)
T 2owa_A 16 GFVSDKLRDNFFQIVRN-RPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDI 94 (138)
T ss_dssp SCBCHHHHHHHHHHHHH-SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHh
Confidence 34566777788888999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccc
Q psy6973 92 QCCGVHR 98 (115)
Q Consensus 92 ~gng~~r 98 (115)
+||...+
T Consensus 95 ~GN~~an 101 (138)
T 2owa_A 95 GGNGRAR 101 (138)
T ss_dssp CCHHHHH
T ss_pred hccHHHH
Confidence 9887754
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=99.97 E-value=8.7e-34 Score=202.94 Aligned_cols=91 Identities=37% Similarity=0.657 Sum_probs=77.6
Q ss_pred CcCcccCCChHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhh
Q psy6973 8 GNGKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGL 87 (115)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~ 87 (115)
+..++..+.+..+++|++|+. .|+|+.|||||+++|+|||+|+|+|||++|+|+||+||+|||+||||+||.|++++++
T Consensus 3 m~~~~~~~~e~~~~~l~~L~~-~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~ 81 (134)
T 2iqj_A 3 MTGKSVKDVDRYQAVLANLLL-EEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQ 81 (134)
T ss_dssp ----------CCHHHHHHHTT-SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHH
T ss_pred cccccHhHHHHHHHHHHHHHc-CcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHH
Confidence 344455566777899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccc
Q psy6973 88 LLCIQCCGVHRC 99 (115)
Q Consensus 88 ~m~~~gng~~r~ 99 (115)
+|..+||..++.
T Consensus 82 ~m~~~GN~~an~ 93 (134)
T 2iqj_A 82 CMQEMGNGKANR 93 (134)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHHHHchHHHHH
Confidence 999999877554
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=2.4e-33 Score=202.13 Aligned_cols=89 Identities=36% Similarity=0.680 Sum_probs=81.4
Q ss_pred CcccCCChHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhh
Q psy6973 10 GKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLL 89 (115)
Q Consensus 10 ~~~~~~~~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m 89 (115)
.+.+.+.+..+++|++|+. .|+|+.|||||+++|+|||+|+|+|||++|+|+||+||+|||+||||+||.|+++++++|
T Consensus 7 ~~~~~~~e~~~~~l~~L~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m 85 (141)
T 2crr_A 7 GKAQKLNEQHQLILSKLLR-EEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCM 85 (141)
T ss_dssp CCTTTTTTCHHHHHHHHHH-SGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHH
Confidence 3444455677889999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcccc
Q psy6973 90 CIQCCGVHRC 99 (115)
Q Consensus 90 ~~~gng~~r~ 99 (115)
..+||..++.
T Consensus 86 ~~~GN~~an~ 95 (141)
T 2crr_A 86 QDMGNTKARL 95 (141)
T ss_dssp HHTHHHHHHH
T ss_pred HHHccHHHHH
Confidence 9999877554
No 4
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.97 E-value=1.4e-32 Score=199.25 Aligned_cols=84 Identities=30% Similarity=0.569 Sum_probs=75.9
Q ss_pred CCChHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhhhc
Q psy6973 14 LQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCIQC 93 (115)
Q Consensus 14 ~~~~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~~g 93 (115)
|..+..+++|++|++ .|+|+.|||||+++|+|+|+|+|||||++|+|+||+||+|||+||||+||.|+++++++|..+|
T Consensus 20 m~~~~~~~~l~~L~~-~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~G 98 (147)
T 3dwd_A 20 MASPRTRKVLKEVRV-QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGG 98 (147)
T ss_dssp --CHHHHHHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHc-CcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHh
Confidence 455777889999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCccc
Q psy6973 94 CGVHR 98 (115)
Q Consensus 94 ng~~r 98 (115)
|...+
T Consensus 99 N~~an 103 (147)
T 3dwd_A 99 NAKFR 103 (147)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 86554
No 5
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=6.1e-32 Score=196.37 Aligned_cols=82 Identities=37% Similarity=0.690 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCc-ccchhhhhhhhhcc
Q psy6973 16 SSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-WPLNLGLLLCIQCC 94 (115)
Q Consensus 16 ~~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~-W~~~~~~~m~~~gn 94 (115)
.++.+++|+.|+. .|+|+.|||||+++|+|+|+|||+|||++|+|+||+||+|||+||||+||. |++++++.|..+||
T Consensus 13 k~~~~~~l~~L~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN 91 (149)
T 2crw_A 13 KQDILTIFKRLRS-VPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGN 91 (149)
T ss_dssp HHHHHHHHHHHHH-STTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhc-CcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhh
Confidence 3567889999999 999999999999999999999999999999999999999999999999996 99999999999888
Q ss_pred Cccc
Q psy6973 95 GVHR 98 (115)
Q Consensus 95 g~~r 98 (115)
..++
T Consensus 92 ~~an 95 (149)
T 2crw_A 92 ASAS 95 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 6
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=99.96 E-value=7.2e-32 Score=194.22 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhhhcc
Q psy6973 15 QSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCIQCC 94 (115)
Q Consensus 15 ~~~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~~gn 94 (115)
+.+..+++|++|+. .|+|+.|||||+++|+|+|+|+|+|||++|+|+||+||+| |+||||+||.|+++++++|..+||
T Consensus 8 ~~e~~~~~l~~l~~-~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN 85 (140)
T 2olm_A 8 QEEKHLKMLRDMTG-LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGN 85 (140)
T ss_dssp HHHHHHHHHHHHHT-SGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhc-CcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhcc
Confidence 55678899999998 9999999999999999999999999999999999999996 999999999999999999999998
Q ss_pred Ccccc
Q psy6973 95 GVHRC 99 (115)
Q Consensus 95 g~~r~ 99 (115)
...+.
T Consensus 86 ~~an~ 90 (140)
T 2olm_A 86 EVCKQ 90 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 7
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=2.1e-31 Score=195.63 Aligned_cols=82 Identities=30% Similarity=0.583 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhhhccCc
Q psy6973 17 SVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCIQCCGV 96 (115)
Q Consensus 17 ~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~~gng~ 96 (115)
...+++|++|+++.|+|+.|||||+++|+|+|+++|||||++|+|+||+||+|||+||||+||.|+++++++|..+||..
T Consensus 6 a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~ 85 (163)
T 3sub_A 6 AAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKK 85 (163)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHH
Confidence 34577999999966899999999999999999999999999999999999999999999999999999999999998875
Q ss_pred cc
Q psy6973 97 HR 98 (115)
Q Consensus 97 ~r 98 (115)
.+
T Consensus 86 an 87 (163)
T 3sub_A 86 CQ 87 (163)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 8
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.5e-31 Score=192.14 Aligned_cols=81 Identities=37% Similarity=0.717 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCc-ccchhhhhhhhhccC
Q psy6973 17 SVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-WPLNLGLLLCIQCCG 95 (115)
Q Consensus 17 ~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~-W~~~~~~~m~~~gng 95 (115)
+..+++|+.|++ .|+|+.|+|||+++|+|+|+|||+|||++|+|+||+||+|||+|+|++||. |++++++.|..+||.
T Consensus 22 ~~~~~~l~~L~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~ 100 (144)
T 2p57_A 22 TEIQTLFKRLRA-VPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNA 100 (144)
T ss_dssp HHHHHHHHHHHH-SGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhc-CCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHH
Confidence 556788899999 999999999999999999999999999999999999999999999999996 999999999999887
Q ss_pred ccc
Q psy6973 96 VHR 98 (115)
Q Consensus 96 ~~r 98 (115)
.++
T Consensus 101 ~an 103 (144)
T 2p57_A 101 NAT 103 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=8.7e-29 Score=195.12 Aligned_cols=84 Identities=30% Similarity=0.569 Sum_probs=75.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhhhc
Q psy6973 14 LQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCIQC 93 (115)
Q Consensus 14 ~~~~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~~g 93 (115)
|.++..+++|+.|+. .|+|+.|||||+++|+|||+|+|+|+|..|+|+||+||+|||+|||++||.|+++++++|...|
T Consensus 19 ~~~~~~~~~~~~~~~-~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~g 97 (329)
T 3o47_A 19 MASPRTRKVLKEVRV-QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGG 97 (329)
T ss_dssp ----CHHHHHHHHHH-STTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHc-CCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhC
Confidence 345666788999999 9999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCccc
Q psy6973 94 CGVHR 98 (115)
Q Consensus 94 ng~~r 98 (115)
|...+
T Consensus 98 N~~~n 102 (329)
T 3o47_A 98 NAKFR 102 (329)
T ss_dssp HHHHH
T ss_pred cHHHH
Confidence 76543
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.94 E-value=6.8e-29 Score=199.15 Aligned_cols=85 Identities=44% Similarity=0.807 Sum_probs=75.5
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhhh
Q psy6973 13 RLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCIQ 92 (115)
Q Consensus 13 ~~~~~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~~ 92 (115)
+.+.+..+++|+.|++ .|+|+.|||||+++|+|+|+|+|||+|++|+|+||+||+|||+||||+||.|+.+++++|...
T Consensus 26 ~~~~~~~~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ 104 (368)
T 3jue_A 26 GREPGGVGHVVAQVQS-VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104 (368)
T ss_dssp ------CCCHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHS
T ss_pred hhhhhHHHHHHHHHHc-CCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHH
Confidence 3345556789999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccc
Q psy6973 93 CCGVHR 98 (115)
Q Consensus 93 gng~~r 98 (115)
||...+
T Consensus 105 gn~~~n 110 (368)
T 3jue_A 105 GNVIIN 110 (368)
T ss_dssp CHHHHH
T ss_pred ccHHHH
Confidence 886544
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.93 E-value=6e-28 Score=195.72 Aligned_cols=83 Identities=33% Similarity=0.720 Sum_probs=77.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhhhc
Q psy6973 14 LQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCIQC 93 (115)
Q Consensus 14 ~~~~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~~g 93 (115)
.|.+..++.|++|+. .|+|+.|||||+++|+|||+|+|||||++|+|+||+| +|||+||||+||.|+++++++|...|
T Consensus 16 ~q~~~~~~~l~~l~~-~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 16 FQGKERRRAVLELLQ-RPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHTT-SGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhHHHHHHHHHhc-CcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhc
Confidence 355777889999999 9999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred cCccc
Q psy6973 94 CGVHR 98 (115)
Q Consensus 94 ng~~r 98 (115)
|..++
T Consensus 94 N~~~~ 98 (386)
T 3lju_X 94 NDAAR 98 (386)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 86554
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.91 E-value=4.6e-26 Score=174.46 Aligned_cols=79 Identities=38% Similarity=0.660 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhhhccCc
Q psy6973 17 SVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCIQCCGV 96 (115)
Q Consensus 17 ~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~~gng~ 96 (115)
+..+++++.|++ .|+|+.|+|||+++|+|+|+|+|+|+|.+|+++||+||+|||+|||++||.|+.+++..|...||..
T Consensus 2 ~~~~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~ 80 (278)
T 1dcq_A 2 ELTKEIISEVQR-MTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAG 80 (278)
T ss_dssp -CHHHHHHHHHH-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHH
T ss_pred chHHHHHHHHHc-CCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHH
Confidence 345789999999 9999999999999999999999999999999999999999999999999999999999999998854
No 13
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=4.9e-26 Score=176.30 Aligned_cols=80 Identities=43% Similarity=0.681 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhhhccCc
Q psy6973 17 SVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCIQCCGV 96 (115)
Q Consensus 17 ~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~~gng~ 96 (115)
+..+++|+.|++ .|+|+.|+|||+++|+|+|+|+|+|+|.+|+|+||+||+|||+|+|++||.|..+++..|...||..
T Consensus 27 ~~~~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~ 105 (301)
T 2b0o_E 27 DLTKLLIAEVKS-RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTS 105 (301)
T ss_dssp CHHHHHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhc-CCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHH
Confidence 445778899999 9999999999999999999999999999999999999999999999999999999999999888754
Q ss_pred c
Q psy6973 97 H 97 (115)
Q Consensus 97 ~ 97 (115)
.
T Consensus 106 ~ 106 (301)
T 2b0o_E 106 F 106 (301)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=4.8e-26 Score=185.96 Aligned_cols=81 Identities=42% Similarity=0.673 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhccccccCCCceeeEEEecCCCcccchhhhhhhhhccCc
Q psy6973 17 SVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCIQCCGV 96 (115)
Q Consensus 17 ~~~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~~~~~~~m~~~gng~ 96 (115)
+..+++++.|++ .|+|+.|+|||+++|+|+|+|+|+|+|+.|+|+||+||+|||+|||++||.|+.+++.+|...||..
T Consensus 8 ~~~~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~ 86 (497)
T 3lvq_E 8 DLTKLLIAEVKS-RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTS 86 (497)
T ss_dssp CHHHHHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHH
T ss_pred HHHHHHHHHHhc-CCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHH
Confidence 556789999999 9999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred cc
Q psy6973 97 HR 98 (115)
Q Consensus 97 ~r 98 (115)
.+
T Consensus 87 an 88 (497)
T 3lvq_E 87 FN 88 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 15
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=98.66 E-value=3.2e-09 Score=75.86 Aligned_cols=50 Identities=30% Similarity=0.679 Sum_probs=44.7
Q ss_pred ccchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 51 LGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 51 ~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
-|.-.|.+|..- .+.|. .....++|..|.|+||.+|+|||+|++|+||.|
T Consensus 34 p~N~~CaDCga~---------------~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w 84 (138)
T 2owa_A 34 PENRTCFDCESR---------------NPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKF 84 (138)
T ss_dssp GGGGBCTTTCCB---------------SCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCC
T ss_pred cCCCcCCCCcCC---------------CCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcC
Confidence 378899999764 36688 688999999999999999999999999999999
No 16
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=98.61 E-value=4.4e-09 Score=74.76 Aligned_cols=50 Identities=40% Similarity=0.982 Sum_probs=44.5
Q ss_pred ccchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 51 LGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 51 ~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
-|.-.|.+|..- .++|. .+...++|..|.|+||.+|+|||+|++|+||.|
T Consensus 25 p~N~~CaDCg~~---------------~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w 75 (134)
T 2iqj_A 25 EDNKFCADCQSK---------------GPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 75 (134)
T ss_dssp GGGGBCTTTCCB---------------SCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCC
T ss_pred cCCCcCCcCcCC---------------CCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCC
Confidence 367899999764 25687 688999999999999999999999999999999
No 17
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=5.1e-09 Score=74.97 Aligned_cols=50 Identities=40% Similarity=0.965 Sum_probs=44.4
Q ss_pred ccchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 51 LGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 51 ~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
-|.-.|.+|.+- .+.|. .+...++|..|.|+||.+|+|||+|++|+||.|
T Consensus 27 p~N~~CaDCga~---------------~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w 77 (141)
T 2crr_A 27 EDNKYCADCEAK---------------GPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 77 (141)
T ss_dssp GGGSSCSSSCCS---------------SCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCC
T ss_pred ccCCcCCCCCCC---------------CCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCC
Confidence 367799999764 25688 688999999999999999999999999999999
No 18
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=98.56 E-value=8.8e-09 Score=75.45 Aligned_cols=50 Identities=40% Similarity=0.822 Sum_probs=44.5
Q ss_pred ccchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 51 LGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 51 ~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
-|.-.|.+|..- .+.|. .....++|..|.|+||.+|+|||+|++|+||.|
T Consensus 20 p~N~~CaDCga~---------------~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~W 70 (163)
T 3sub_A 20 ESNNKCFDCGIS---------------NPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIF 70 (163)
T ss_dssp GGGGBCTTTCCB---------------SCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCC
T ss_pred CCCCccccCCCC---------------CCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCc
Confidence 367899999774 25687 688999999999999999999999999999999
No 19
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=98.50 E-value=1.4e-08 Score=73.23 Aligned_cols=49 Identities=35% Similarity=0.896 Sum_probs=41.9
Q ss_pred cchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 52 GLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 52 GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
|.-.|.+|..- .+.|. .....++|..|.|+||.+|+|||+|++|+||.|
T Consensus 37 ~N~~CaDCga~---------------~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W 86 (147)
T 3dwd_A 37 ENNVCFECGAF---------------NPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKW 86 (147)
T ss_dssp TTTBCTTTCCB---------------SCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--C
T ss_pred CCCccCCCCCC---------------CCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCC
Confidence 66789999774 35687 688999999999999999999999999999999
No 20
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.3e-08 Score=73.62 Aligned_cols=49 Identities=41% Similarity=0.940 Sum_probs=43.6
Q ss_pred cchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCC-C
Q psy6973 52 GLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDE-W 115 (115)
Q Consensus 52 GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~-~ 115 (115)
|.-.|.+|..- .+.|. .....++|..|.|+||.+|+|||+|++|+||. |
T Consensus 28 ~N~~CaDCga~---------------~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W 78 (149)
T 2crw_A 28 TNKVCFDCGAK---------------NPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNW 78 (149)
T ss_dssp TTSBCSSSCCB---------------SCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCC
T ss_pred CCCcCCCCcCC---------------CCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCC
Confidence 67799999764 36688 68899999999999999999999999999995 8
No 21
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=98.42 E-value=3.6e-08 Score=70.95 Aligned_cols=50 Identities=42% Similarity=0.915 Sum_probs=44.1
Q ss_pred ccchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCC-C
Q psy6973 51 LGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDE-W 115 (115)
Q Consensus 51 ~GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~-~ 115 (115)
-|.-.|.+|... .+.|. .....++|..|.|+||.+|+|||+|++++||. |
T Consensus 35 p~N~~CaDCga~---------------~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W 86 (144)
T 2p57_A 35 PTNKACFDCGAK---------------NPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 86 (144)
T ss_dssp GGGGBCTTTCCB---------------SCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCC
T ss_pred CCCCcCCCCcCC---------------CCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCC
Confidence 377899999764 36688 68899999999999999999999999999996 8
No 22
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=98.32 E-value=9.1e-08 Score=68.36 Aligned_cols=48 Identities=21% Similarity=0.489 Sum_probs=42.6
Q ss_pred cchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 52 GLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 52 GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
|.-.|.+|..- .+.|. .+...++|..|.|+||.+|+| |+|++|+||.|
T Consensus 24 ~N~~CaDCg~~---------------~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w 72 (140)
T 2olm_A 24 HNRKCFDCDQR---------------GPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTF 72 (140)
T ss_dssp GGGSCTTTCSS---------------CCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCC
T ss_pred CCCcCCCCCCC---------------CCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCC
Confidence 67899999764 25688 688999999999999999996 99999999999
No 23
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.24 E-value=1.3e-07 Score=75.47 Aligned_cols=49 Identities=53% Similarity=1.094 Sum_probs=44.2
Q ss_pred cchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 52 GLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 52 GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
|.-.|.+|..- .+.|. .+...++|..|.|+||.+|+|||+|++|+||.|
T Consensus 44 ~n~~c~dc~~~---------------~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w 93 (368)
T 3jue_A 44 GNAQCCDCREP---------------APEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSW 93 (368)
T ss_dssp TTTBCTTTCCB---------------SCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCC
T ss_pred CcCcCCCCCCC---------------CCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccc
Confidence 67899999774 35688 689999999999999999999999999999999
No 24
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.18 E-value=2.7e-07 Score=72.18 Aligned_cols=49 Identities=35% Similarity=0.896 Sum_probs=44.1
Q ss_pred cchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 52 GLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 52 GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
|.-.|.+|..- .+.|. .....++|..|+|+||.+|+|||+|++|+||.|
T Consensus 36 ~n~~c~dc~~~---------------~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~ 85 (329)
T 3o47_A 36 ENNVCFECGAF---------------NPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKW 85 (329)
T ss_dssp TTTBCTTTCCB---------------SCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCC
T ss_pred CCCcCCCCCCC---------------CCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCC
Confidence 67789999774 35687 699999999999999999999999999999999
No 25
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.12 E-value=3.4e-07 Score=74.41 Aligned_cols=49 Identities=47% Similarity=0.824 Sum_probs=44.0
Q ss_pred cchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 52 GLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 52 GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
|...|.+|..- .++|. .+...++|..|+|.||.+|+|||+|++|+||.|
T Consensus 22 ~n~~c~dc~~~---------------~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w 71 (497)
T 3lvq_E 22 GNSQCCDCGAA---------------DPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLL 71 (497)
T ss_dssp TTTBCTTTCCB---------------SCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCC
T ss_pred CCCcccCCCCC---------------CCCEEEechhHHhHHhhHHHHHhhccccceecccccCCC
Confidence 67899999764 35688 688999999999999999999999999999998
No 26
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=98.05 E-value=5.5e-07 Score=68.30 Aligned_cols=49 Identities=45% Similarity=0.854 Sum_probs=43.2
Q ss_pred cchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 52 GLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 52 GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
|.-.|.+|.+. .+.|. .+...++|..|.|+||.+|+|||+|++|++|.|
T Consensus 16 ~n~~c~dc~~~---------------~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~ 65 (278)
T 1dcq_A 16 GNDVCCDCGAP---------------DPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVL 65 (278)
T ss_dssp TTTBCTTTCCB---------------SCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCC
T ss_pred CCCcCCCCCCC---------------CCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCC
Confidence 66789999775 24677 588889999999999999999999999999998
No 27
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.02 E-value=7e-07 Score=68.53 Aligned_cols=49 Identities=47% Similarity=0.824 Sum_probs=43.8
Q ss_pred cchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 52 GLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 52 GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
|.-.|.+|..- .++|. .....++|..|.|+||.+|+|||+|+++++|.|
T Consensus 41 ~n~~c~dc~~~---------------~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w 90 (301)
T 2b0o_E 41 GNSQCCDCGAA---------------DPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLL 90 (301)
T ss_dssp TTTBCTTTCCB---------------SCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCC
T ss_pred CCCcCCCCCCC---------------CCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCC
Confidence 67799999764 36687 688999999999999999999999999999998
No 28
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.92 E-value=1.5e-06 Score=70.04 Aligned_cols=48 Identities=35% Similarity=0.943 Sum_probs=42.7
Q ss_pred cchhhhhccccccCCCceeeEEEecCCCccc-chhhhhhhhhccCcccccCccccceEEeeeCCC
Q psy6973 52 GLLLCIQCCGVHRCLGAHVSRVRSLELDEWP-LNLGLLLCIQCCGVHRCLGAHVSRVRFLELDEW 115 (115)
Q Consensus 52 GvflC~~CsgiHR~lG~~is~VkSl~ld~W~-~~~~~~m~~~gng~~r~~g~~is~~~~~~~~~~ 115 (115)
|.-.|.+|.+- .+.|. .+...++|..|+|+||.+ +|||+|++|+||.|
T Consensus 33 ~N~~C~dC~~~---------------~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w 81 (386)
T 3lju_X 33 GNARCADCGAP---------------DPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAW 81 (386)
T ss_dssp GGSBCTTTCCB---------------SCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCC
T ss_pred CCCcCccCCCC---------------CCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCC
Confidence 56689999874 25687 688999999999999999 99999999999998
No 29
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=89.85 E-value=0.074 Score=30.93 Aligned_cols=37 Identities=27% Similarity=0.642 Sum_probs=29.8
Q ss_pred CCCCCccCCCCCC-CCeeeeeccchhhhhccccccCCC
Q psy6973 31 PGNLTCADCAEAG-PTWASLNLGLLLCIQCCGVHRCLG 67 (115)
Q Consensus 31 ~~N~~CaDCg~~~-p~waS~~~GvflC~~CsgiHR~lG 67 (115)
+..+.|+.|++.. |.|-.-..|..||-.|+-.++..|
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC
Confidence 4578999999875 799999999999999986555443
No 30
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=86.49 E-value=0.31 Score=30.05 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=30.7
Q ss_pred CCCCCCccCCCCCC-CCeeeeeccchhhhhccccccCCC
Q psy6973 30 VPGNLTCADCAEAG-PTWASLNLGLLLCIQCCGVHRCLG 67 (115)
Q Consensus 30 ~~~N~~CaDCg~~~-p~waS~~~GvflC~~CsgiHR~lG 67 (115)
......|++|+... |.|-.-..|..||-.|+-..+..|
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 45788999999875 799999999999999986554433
No 31
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=84.87 E-value=0.43 Score=27.19 Aligned_cols=31 Identities=29% Similarity=0.619 Sum_probs=25.9
Q ss_pred CCccCCCCCC-CCeeeeeccchhhhhcccccc
Q psy6973 34 LTCADCAEAG-PTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 34 ~~CaDCg~~~-p~waS~~~GvflC~~CsgiHR 64 (115)
+.|++|+... |.|-.-..|..||-.|+-..+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k 33 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 33 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHH
Confidence 5799999875 799999999999999986433
No 32
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=82.08 E-value=0.74 Score=28.50 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=30.5
Q ss_pred CCCCCCccCCCCC-CCCeeeeeccchhhhhccccccCCC
Q psy6973 30 VPGNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLG 67 (115)
Q Consensus 30 ~~~N~~CaDCg~~-~p~waS~~~GvflC~~CsgiHR~lG 67 (115)
......|+.|+.. .|.|-.-..|..||-.|+-..+..|
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcC
Confidence 3567899999987 5899999999999999976554433
No 33
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=79.80 E-value=0.3 Score=33.24 Aligned_cols=33 Identities=27% Similarity=0.653 Sum_probs=26.5
Q ss_pred CCCCccCCCCC-CCCeeeeeccchhhhhcccccc
Q psy6973 32 GNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 32 ~N~~CaDCg~~-~p~waS~~~GvflC~~CsgiHR 64 (115)
..+.|++||+. .|.|-.-..|.+||-.|+-.++
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 36799999987 5899998999999999985443
No 34
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=78.84 E-value=0.9 Score=33.53 Aligned_cols=32 Identities=31% Similarity=0.708 Sum_probs=26.4
Q ss_pred CCCCCccCCCCCCCCeeeeeccchhhhhcccc
Q psy6973 31 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 62 (115)
Q Consensus 31 ~~N~~CaDCg~~~p~waS~~~GvflC~~Csgi 62 (115)
|.-..|+.||.+...+.|...|.++|..|...
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~ 179 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAAL 179 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSS
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCC
Confidence 44568999999966788899999999999754
No 35
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=71.13 E-value=0.99 Score=29.17 Aligned_cols=30 Identities=23% Similarity=0.613 Sum_probs=24.1
Q ss_pred CCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 32 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 32 ~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
|+..|.-||.+.. ...||++.|..|.+..|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 4688999997654 46899999999998755
No 36
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=66.97 E-value=1.6 Score=27.96 Aligned_cols=31 Identities=19% Similarity=0.490 Sum_probs=25.5
Q ss_pred CCCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 31 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 31 ~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
++...|.-||.+.. ...||++.|..|++..|
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (84)
T 1hcq_A 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFK 32 (84)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCcCcEECCCCC---CeeeCccchHHhhhhhh
Confidence 35678999997654 57999999999999776
No 37
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=66.86 E-value=1.6 Score=28.25 Aligned_cols=32 Identities=16% Similarity=0.513 Sum_probs=26.5
Q ss_pred CCCCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 30 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 30 ~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.+.+..|.-||.+.. ...||++.|..|++..|
T Consensus 4 ~~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (89)
T 2ebl_A 4 GSSGIECVVCGDKSS---GKHYGQFTCEGCKSFFK 35 (89)
T ss_dssp CCSSCBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceEeCchhhHHhhhhhh
Confidence 456778999998765 46999999999999776
No 38
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=66.43 E-value=2 Score=26.91 Aligned_cols=36 Identities=19% Similarity=0.547 Sum_probs=26.8
Q ss_pred CCCCCccCCCCCC-CCeee--eeccchhhhhccccccCCC
Q psy6973 31 PGNLTCADCAEAG-PTWAS--LNLGLLLCIQCCGVHRCLG 67 (115)
Q Consensus 31 ~~N~~CaDCg~~~-p~waS--~~~GvflC~~CsgiHR~lG 67 (115)
.....|+.|+... |.|-. ...| .||-.|+-..+..|
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~ 44 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYN 44 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhC
Confidence 4578999999874 89998 6677 89999987555443
No 39
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=62.59 E-value=1.3 Score=30.12 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=24.1
Q ss_pred CCCCccCCCCCCCCe-eeeeccchhhhhcccc
Q psy6973 32 GNLTCADCAEAGPTW-ASLNLGLLLCIQCCGV 62 (115)
Q Consensus 32 ~N~~CaDCg~~~p~w-aS~~~GvflC~~Csgi 62 (115)
+...|.+||...-++ ..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 566899999875433 3468999999999875
No 40
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=62.45 E-value=1.8 Score=28.70 Aligned_cols=28 Identities=21% Similarity=0.571 Sum_probs=23.2
Q ss_pred CCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 34 LTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 34 ~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
..|.-||.+.. ...||++.|..|++..|
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 29 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFR 29 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhe
Confidence 56889997654 46999999999999766
No 41
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=62.19 E-value=3.2 Score=24.62 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=21.9
Q ss_pred CCCCccCCCCCCCCeeeeeccchhhhhcccc
Q psy6973 32 GNLTCADCAEAGPTWASLNLGLLLCIQCCGV 62 (115)
Q Consensus 32 ~N~~CaDCg~~~p~waS~~~GvflC~~Csgi 62 (115)
.-..|.+|+.....+ ....|..+|..|+-+
T Consensus 10 ~~~~Cp~C~~~~lv~-D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 10 PRVTCPNHPDAILVE-DYRAGDMICPECGLV 39 (58)
T ss_dssp SCCSBTTBSSSCCEE-CSSSCCEECTTTCCE
T ss_pred ccccCcCCCCCceeE-eCCCCeEEeCCCCCE
Confidence 345799999865322 346799999999776
No 42
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=61.17 E-value=2.4 Score=28.79 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=25.2
Q ss_pred CCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 32 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 32 ~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
....|.-||.+.. ...||++.|..|++..|
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFR 36 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhh
Confidence 4678999997654 57999999999999766
No 43
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=60.71 E-value=1.4 Score=31.13 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCCCCccCCCCCCCC-eeeeeccchhhhhccccc
Q psy6973 31 PGNLTCADCAEAGPT-WASLNLGLLLCIQCCGVH 63 (115)
Q Consensus 31 ~~N~~CaDCg~~~p~-waS~~~GvflC~~CsgiH 63 (115)
...-+|.+||.+=|. -.-.--++..|+.|...+
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 567899999998652 222344778899998653
No 44
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=60.31 E-value=2 Score=29.08 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=30.4
Q ss_pred CCCCCCccCCCCCC-CCeeeeeccchhhhhccccccCCC
Q psy6973 30 VPGNLTCADCAEAG-PTWASLNLGLLLCIQCCGVHRCLG 67 (115)
Q Consensus 30 ~~~N~~CaDCg~~~-p~waS~~~GvflC~~CsgiHR~lG 67 (115)
......|+.|+... |.|-.-..|..||-.|+-..+..|
T Consensus 56 ~~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~ 94 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 94 (115)
T ss_dssp CCTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHS
T ss_pred ccccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhC
Confidence 35578999999874 899999999999999986544433
No 45
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=58.77 E-value=2.4 Score=27.62 Aligned_cols=30 Identities=20% Similarity=0.594 Sum_probs=24.6
Q ss_pred CCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 32 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 32 ~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
....|.-||.+.. ...||++.|..|++..|
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 38 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFK 38 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHH
Confidence 4678999998654 57999999999999766
No 46
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=58.74 E-value=1.6 Score=29.17 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=25.1
Q ss_pred CCCCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 30 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 30 ~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.+....|.-||.+. ....||++.|..|++..|
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFK 35 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhc
Confidence 35678899999754 257999999999999776
No 47
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=57.45 E-value=2.6 Score=27.01 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=22.8
Q ss_pred CCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 33 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 33 N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
...|.-||.+.. ...||++.|..|++..|
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (86)
T 1dsz_A 4 YKPCFVCQDKSS---GYHYGVSACEGCKGFFR 32 (86)
T ss_dssp --CCTTTCSCCC---SEETTEECCHHHHHHHH
T ss_pred CCCCcEECCCcc---ceeeCchhHHHHHHHHH
Confidence 356999997664 46999999999999776
No 48
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=57.32 E-value=1.5 Score=29.68 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=23.7
Q ss_pred CCCCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 30 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 30 ~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.+....|.-||.+.. ...||++.|..|++..|
T Consensus 6 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 37 (113)
T 2a66_A 6 EDLEELCPVCGDKVS---GYHYGLLTCESCKGFFK 37 (113)
T ss_dssp ----CBCTTTCCBEE---EEETTEEEEHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceeeCcccHHHHHHHHh
Confidence 456788999997643 57999999999999766
No 49
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=54.86 E-value=3.5 Score=26.59 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=22.3
Q ss_pred CccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 35 TCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 35 ~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.|.-||.+.. ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFK 28 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhce
Confidence 5888997654 57999999999999766
No 50
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=54.74 E-value=2.8 Score=28.16 Aligned_cols=31 Identities=19% Similarity=0.538 Sum_probs=23.8
Q ss_pred CCCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 31 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 31 ~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.....|.-||.+.. ...||++.|..|++..|
T Consensus 4 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 34 (110)
T 1kb2_A 4 NVPRICGVCGDRAT---GFHFNAMTCEGCKGFFR 34 (110)
T ss_dssp ---CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred ccCCCCcEeCCCCC---ceEeCchhHhhhhhhhe
Confidence 34577999997664 46999999999999766
No 51
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=52.79 E-value=2.6 Score=27.77 Aligned_cols=29 Identities=24% Similarity=0.631 Sum_probs=22.8
Q ss_pred CCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 33 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 33 N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
...|.-||.+.. ...||++.|..|++..|
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 31 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFK 31 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHH
Confidence 457999997654 46899999999999766
No 52
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=52.60 E-value=3.2 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=23.7
Q ss_pred CCCCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 30 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 30 ~~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.+..+.|.-||.+.. ...||++.|..|.+.-|
T Consensus 26 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 26 NAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ----CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 455788999998754 46999999999998755
No 53
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=51.48 E-value=6.1 Score=31.03 Aligned_cols=29 Identities=31% Similarity=0.645 Sum_probs=22.5
Q ss_pred CCccCCCCCCCCee-eeeccchhhhhcccc
Q psy6973 34 LTCADCAEAGPTWA-SLNLGLLLCIQCCGV 62 (115)
Q Consensus 34 ~~CaDCg~~~p~wa-S~~~GvflC~~Csgi 62 (115)
..|.+|+...|.-+ ....|-.+|.+|+-|
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 47999998655532 457899999999865
No 54
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=51.10 E-value=2.1 Score=27.44 Aligned_cols=30 Identities=23% Similarity=0.598 Sum_probs=24.5
Q ss_pred CCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 32 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 32 ~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.+..|.-||.+.. ...||++.|..|++..|
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 33 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFK 33 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHH
Confidence 4567999997654 46899999999999776
No 55
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=51.05 E-value=3.4 Score=26.88 Aligned_cols=31 Identities=29% Similarity=0.666 Sum_probs=23.8
Q ss_pred CCCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 31 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 31 ~~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
+....|.-||.+.. ...||++.|..|++..|
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (94)
T 1a6y_A 5 GMVLLCKVCGDVAS---GFHYGVLACEGCKGFFR 35 (94)
T ss_dssp ---CBCTTTSSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCcCcEeCCCCc---ceEeCccchhhhhhehh
Confidence 34567999997654 57999999999999766
No 56
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=49.86 E-value=6.1 Score=30.81 Aligned_cols=31 Identities=29% Similarity=0.560 Sum_probs=23.6
Q ss_pred CCCccCCCCCCCCee-eeeccchhhhhccccc
Q psy6973 33 NLTCADCAEAGPTWA-SLNLGLLLCIQCCGVH 63 (115)
Q Consensus 33 N~~CaDCg~~~p~wa-S~~~GvflC~~CsgiH 63 (115)
-..|.+||..+|.-+ ....|-.+|.+|+-|-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 457999999765332 3567999999999874
No 57
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=49.38 E-value=14 Score=23.08 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhcccc
Q psy6973 20 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 62 (115)
Q Consensus 20 ~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~Csgi 62 (115)
...+.+|..+....-.|.-||....... ..||..|..|.-.
T Consensus 14 RK~vkkie~~q~~ky~C~fCgk~~vkR~--a~GIW~C~~C~~~ 54 (73)
T 1ffk_W 14 RVRVRDVEIKHKKKYKCPVCGFPKLKRA--STSIWVCGHCGYK 54 (73)
T ss_pred HHHHHHHHHhcccCccCCCCCCceeEEE--EeEEEECCCCCcE
Confidence 4455666444788999999998766655 4699999999654
No 58
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=46.32 E-value=2.6 Score=27.68 Aligned_cols=29 Identities=17% Similarity=0.537 Sum_probs=24.0
Q ss_pred CCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 33 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 33 N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
...|.-||.+.. ...||++.|..|++..|
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFK 32 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhe
Confidence 467999997653 56999999999999766
No 59
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=46.09 E-value=5.6 Score=31.87 Aligned_cols=30 Identities=23% Similarity=0.637 Sum_probs=24.3
Q ss_pred CCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 32 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 32 ~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.+..|.-||.+... ..||+..|..|.+..|
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 46789999987654 5899999999998654
No 60
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=45.93 E-value=4.2 Score=25.50 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=22.0
Q ss_pred CccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 35 TCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 35 ~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.|.-||.+.. ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFR 28 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeee
Confidence 4788887654 46999999999999766
No 61
>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis}
Probab=45.75 E-value=4.7 Score=27.61 Aligned_cols=21 Identities=29% Similarity=0.800 Sum_probs=18.2
Q ss_pred CCeeeeeccchhhhhcccccc
Q psy6973 44 PTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 44 p~waS~~~GvflC~~CsgiHR 64 (115)
-+|+-+-.|++.|.+|.||.-
T Consensus 27 ld~~GtY~G~LPCADC~GI~t 47 (126)
T 3lhn_A 27 LDWPGVYEGVLPCASCEGIQT 47 (126)
T ss_dssp SCCCEEEEEEECCTTSSEEEE
T ss_pred cccceEEEEEeECCCCCCeEE
Confidence 469999999999999999753
No 62
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=44.69 E-value=3 Score=27.75 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCC-eeeeeccchhhhhccc
Q psy6973 21 ASLQSIRSRVPGNLTCADCAEAGPT-WASLNLGLLLCIQCCG 61 (115)
Q Consensus 21 ~~l~~l~~~~~~N~~CaDCg~~~p~-waS~~~GvflC~~Csg 61 (115)
+.+..|.. +..-+|.+||.+=|. -.-.--++..|..|..
T Consensus 71 ~Al~ri~~--g~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 71 AALARIAS--GTFGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp HHHHHHHH--TCCSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred HHHHhhhC--CCcCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 34445544 678899999998552 1123346678888864
No 63
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=42.90 E-value=11 Score=27.80 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=22.8
Q ss_pred CCccCCCCCCCCeee-eeccchhhhhcccc
Q psy6973 34 LTCADCAEAGPTWAS-LNLGLLLCIQCCGV 62 (115)
Q Consensus 34 ~~CaDCg~~~p~waS-~~~GvflC~~Csgi 62 (115)
..|.+|+...+.-+. ..-|-.+|.+|+-|
T Consensus 22 ~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred eECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 379999996554443 57899999999887
No 64
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.07 E-value=14 Score=23.99 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=20.0
Q ss_pred CCCCCccCCCCCC-------CC----------eeeeeccchhhhhccc
Q psy6973 31 PGNLTCADCAEAG-------PT----------WASLNLGLLLCIQCCG 61 (115)
Q Consensus 31 ~~N~~CaDCg~~~-------p~----------waS~~~GvflC~~Csg 61 (115)
+.--.|+|||.+- |. -++-.|| .+|.+|..
T Consensus 31 ~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 31 PKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 3444799999752 11 3466789 99998853
No 65
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.84 E-value=4.2 Score=23.86 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=21.5
Q ss_pred CCCCCCccCCCCCCCCeeeeeccchhhhhcccc
Q psy6973 30 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 62 (115)
Q Consensus 30 ~~~N~~CaDCg~~~p~waS~~~GvflC~~Csgi 62 (115)
.-...+|..|++. +..|+.-|..|...
T Consensus 11 ~~~k~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 11 IFKKYVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SSSEEECTTTCCE------ECTTCSSCSSSSSC
T ss_pred HhCCccCCCCCCc------CCCCceecCCCCCc
Confidence 3457899999998 45788999999654
No 66
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=36.82 E-value=5.3 Score=26.90 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=21.9
Q ss_pred CCCCccCCCCCCCC-eeeeeccchhhhhcccc
Q psy6973 32 GNLTCADCAEAGPT-WASLNLGLLLCIQCCGV 62 (115)
Q Consensus 32 ~N~~CaDCg~~~p~-waS~~~GvflC~~Csgi 62 (115)
..-+|.+||.+=|. -.-.--++..|+.|...
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~ 86 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQE 86 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHH
Confidence 35799999998652 22234467889999864
No 67
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=36.27 E-value=23 Score=22.80 Aligned_cols=27 Identities=37% Similarity=0.763 Sum_probs=20.2
Q ss_pred CCCCccCCCCCCCC-eeeee--ccchhhhh
Q psy6973 32 GNLTCADCAEAGPT-WASLN--LGLLLCIQ 58 (115)
Q Consensus 32 ~N~~CaDCg~~~p~-waS~~--~GvflC~~ 58 (115)
....|.+|++..+. |+.+. -|.+-|-+
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 45789999966655 98887 77777744
No 68
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=32.69 E-value=5.9 Score=32.31 Aligned_cols=30 Identities=23% Similarity=0.582 Sum_probs=23.7
Q ss_pred CCCCccCCCCCCCCeeeeeccchhhhhcccccc
Q psy6973 32 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 32 ~N~~CaDCg~~~p~waS~~~GvflC~~CsgiHR 64 (115)
.+..|.-||.+... ..||+..|..|.+..|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 35579999987553 5899999999998665
No 69
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.07 E-value=39 Score=24.08 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHhc-CCCCCCccCCCCCCCCeeeeeccchhhhhccc
Q psy6973 16 SSVETASLQSIRSR-VPGNLTCADCAEAGPTWASLNLGLLLCIQCCG 61 (115)
Q Consensus 16 ~~~~~~~l~~l~~~-~~~N~~CaDCg~~~p~waS~~~GvflC~~Csg 61 (115)
.+-++++..+++.. ..-+..|.-||..++...=--|.+.+|..|-.
T Consensus 18 ~~~r~~~~~~v~~~~~~~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~ 64 (159)
T 3a1b_A 18 KQLRERLVYEVRQKCRNIEDICISCGSLNVTLEHPLFVGGMCQNCKN 64 (159)
T ss_dssp HHHHHHHHHHHHTTSSCGGGSBTTTCCSCCCEECSSBSSEECHHHHH
T ss_pred HHHHHhhhHHHHhccCCccCcccCCCCcCccccCCCccchhhHHHHH
Confidence 35556667777762 22367899999988875545668888888863
No 70
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=31.30 E-value=11 Score=21.00 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=20.1
Q ss_pred CCCccCCCCCCCCeeeeeccchhhhhcccc
Q psy6973 33 NLTCADCAEAGPTWASLNLGLLLCIQCCGV 62 (115)
Q Consensus 33 N~~CaDCg~~~p~waS~~~GvflC~~Csgi 62 (115)
...|.+|+...-.+ ....|-++|..|.-+
T Consensus 5 ~~~CP~C~~~~l~~-d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACESAELIY-DPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSCCCEEE-ETTTTEEEESSSCCB
T ss_pred cEeCcCCCCcceEE-cCCCCeEECcccCCc
Confidence 45799998853322 224588999999765
No 71
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=29.37 E-value=4.8 Score=26.76 Aligned_cols=27 Identities=30% Similarity=0.832 Sum_probs=18.7
Q ss_pred CCCCCCccCCCCCCCCee----eeeccchhh
Q psy6973 30 VPGNLTCADCAEAGPTWA----SLNLGLLLC 56 (115)
Q Consensus 30 ~~~N~~CaDCg~~~p~wa----S~~~GvflC 56 (115)
.|....|.+|++....|+ .+.-|..-|
T Consensus 15 ~p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC 45 (102)
T 2ida_A 15 TPSALGCEECLKIGSPWVHLRICRTCGHVGC 45 (102)
T ss_dssp CCSSSSCHHHHTTTCCCSCBEEESSSCCCCB
T ss_pred CCCCCcCccccccCCcchheeeeeEcCCCcc
Confidence 355678999999986675 455555554
No 72
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=27.98 E-value=10 Score=20.34 Aligned_cols=28 Identities=18% Similarity=0.516 Sum_probs=17.2
Q ss_pred CccCCCCCCCCeeeeeccc-hhhhhcccc
Q psy6973 35 TCADCAEAGPTWASLNLGL-LLCIQCCGV 62 (115)
Q Consensus 35 ~CaDCg~~~p~waS~~~Gv-flC~~Csgi 62 (115)
.|..|+.|+.+-.--+--+ .-|..|+..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 4888999888766533222 336666553
No 73
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=27.96 E-value=23 Score=24.25 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=21.2
Q ss_pred CCCCCccCCCCCCCC-----------------eeeeeccchhhhhccc
Q psy6973 31 PGNLTCADCAEAGPT-----------------WASLNLGLLLCIQCCG 61 (115)
Q Consensus 31 ~~N~~CaDCg~~~p~-----------------waS~~~GvflC~~Csg 61 (115)
+.--.|.|||.+-+- -++-.||-.+|..|..
T Consensus 39 ~~~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr 86 (121)
T 3u5e_g 39 ATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVK 86 (121)
T ss_dssp CCCCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHH
T ss_pred CCCCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHH
Confidence 334459999976221 3466789999999854
No 74
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.82 E-value=21 Score=22.70 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhcccc
Q psy6973 21 ASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 62 (115)
Q Consensus 21 ~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~Csgi 62 (115)
..+.+|..+....-.|..||+... -....|++.|..|...
T Consensus 15 k~vk~ie~~q~~~y~Cp~CG~~~v--~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 15 RRVAEIESEMNEDHACPNCGEDRV--DRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHSCEECSSSCCEEE--EEEETTEEEETTTCCE
T ss_pred HHHHHHHHhccccCcCCCCCCcce--eccCCCeEECCCCCCE
Confidence 344555333567889999998432 2345899999999765
No 75
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.66 E-value=37 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCCCCccCCCCCC-----CCeeeeeccchhhhhccccc
Q psy6973 31 PGNLTCADCAEAG-----PTWASLNLGLLLCIQCCGVH 63 (115)
Q Consensus 31 ~~N~~CaDCg~~~-----p~waS~~~GvflC~~CsgiH 63 (115)
.+...|+-|+.+- +.-........+|.+|++.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 4678899999874 22233555678888888765
No 76
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.17 E-value=53 Score=20.95 Aligned_cols=39 Identities=15% Similarity=0.510 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhcccc
Q psy6973 22 SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 62 (115)
Q Consensus 22 ~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~Csgi 62 (115)
.+.+|..+....-.|.-||...... ...||.-|..|...
T Consensus 24 ~vkkie~~q~~ky~CpfCGk~~vkR--~a~GIW~C~kCg~~ 62 (83)
T 3j21_i 24 RVAAVEAKMRQKHTCPVCGRKAVKR--ISTGIWQCQKCGAT 62 (83)
T ss_dssp HHHHHHHHHHSCBCCSSSCSSCEEE--EETTEEEETTTCCE
T ss_pred HHHHHHHHhhcccCCCCCCCceeEe--cCcCeEEcCCCCCE
Confidence 3344444345678899999886544 56899999999654
No 77
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=24.45 E-value=49 Score=19.93 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCCeeeeeccch-hhhhcccccc
Q psy6973 19 ETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLL-LCIQCCGVHR 64 (115)
Q Consensus 19 ~~~~l~~l~~~~~~N~~CaDCg~~~p~waS~~~Gvf-lC~~CsgiHR 64 (115)
.++.++.+.+ ...|.=|-....+-+.++-|-. .|..|+...+
T Consensus 8 l~~~~~~l~~----~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~ 50 (79)
T 2yho_A 8 LQEKLRKLKE----AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ 50 (79)
T ss_dssp HHHHHHHHHH----HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS
T ss_pred HHHHHHcCCC----CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC
Confidence 3455566666 4578778777777777888988 8999987543
No 78
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=24.16 E-value=46 Score=21.65 Aligned_cols=39 Identities=13% Similarity=0.323 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCCeeeeeccchhhhhcccc
Q psy6973 22 SLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 62 (115)
Q Consensus 22 ~l~~l~~~~~~N~~CaDCg~~~p~waS~~~GvflC~~Csgi 62 (115)
.+.+|..+....-.|.-||...... ...||.-|..|...
T Consensus 25 ~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~C~~~ 63 (92)
T 3izc_m 25 QVKKLEIQQHARYDCSFCGKKTVKR--GAAGIWTCSCCKKT 63 (92)
T ss_dssp HHHHHHHHHHSCCCCSSSCSSCCEE--EETTEEECTTTCCE
T ss_pred HHHHHHHHHhcCCcCCCCCCceeee--cccceEEcCCCCCE
Confidence 3344444345678899999886554 45899999999654
No 79
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=24.09 E-value=41 Score=22.91 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=21.0
Q ss_pred CCCCCccCCCCCC-------C-C-----------eeeeeccchhhhhccc
Q psy6973 31 PGNLTCADCAEAG-------P-T-----------WASLNLGLLLCIQCCG 61 (115)
Q Consensus 31 ~~N~~CaDCg~~~-------p-~-----------waS~~~GvflC~~Csg 61 (115)
+.--.|+|||.+- | + -++-.||-.+|..|..
T Consensus 39 ~~~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr 88 (119)
T 3iz5_i 39 ASGPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVR 88 (119)
T ss_dssp SSCCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHH
T ss_pred CCCCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHH
Confidence 3344599999752 1 1 2466789999999964
No 80
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=23.95 E-value=11 Score=27.28 Aligned_cols=23 Identities=39% Similarity=0.850 Sum_probs=14.4
Q ss_pred CCccCCCCCCCCeeeeeccchhhhhccc
Q psy6973 34 LTCADCAEAGPTWASLNLGLLLCIQCCG 61 (115)
Q Consensus 34 ~~CaDCg~~~p~waS~~~GvflC~~Csg 61 (115)
..|..||..-++- |-.+|..|++
T Consensus 164 ~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 164 VLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp EECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred EECCcCCCChhhC-----CCcCCccccC
Confidence 3477777655433 7777777764
No 81
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.74 E-value=29 Score=24.29 Aligned_cols=34 Identities=24% Similarity=0.570 Sum_probs=26.6
Q ss_pred CCCCccCCCCC-----CCCeeeeeccchhhhhccccccC
Q psy6973 32 GNLTCADCAEA-----GPTWASLNLGLLLCIQCCGVHRC 65 (115)
Q Consensus 32 ~N~~CaDCg~~-----~p~waS~~~GvflC~~CsgiHR~ 65 (115)
+...|+-|+++ ++.-........+|..|+..++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 67899999997 55555677788999999977653
No 82
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=21.74 E-value=60 Score=26.17 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCC--CCCccCCCCCCCCeeeeeccchhhhhccc
Q psy6973 18 VETASLQSIRSRVPG--NLTCADCAEAGPTWASLNLGLLLCIQCCG 61 (115)
Q Consensus 18 ~~~~~l~~l~~~~~~--N~~CaDCg~~~p~waS~~~GvflC~~Csg 61 (115)
.+.++..+++. ... +..|.-||..++...=--+.+.+|..|-.
T Consensus 34 ~~~~~~~~~~~-~~~~~e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~ 78 (386)
T 2pv0_B 34 GRDLIAYEVKA-NQRNIEDICICCGSLQVHTQHPLFEGGICAPCKD 78 (386)
T ss_dssp CHHHHHHHHHS-SCCCGGGSBTTTCCSCCCSBCSSBSSBCCHHHHH
T ss_pred cHHHHHHHHHh-ccCcccceeCCCCCcCccccCCCcCcchhhHHHH
Confidence 44566677766 444 44999999987644334457888888864
No 83
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=21.15 E-value=34 Score=23.29 Aligned_cols=28 Identities=29% Similarity=0.694 Sum_probs=21.6
Q ss_pred CCCCCccCCCCCCCCeeeeeccchhhhh
Q psy6973 31 PGNLTCADCAEAGPTWASLNLGLLLCIQ 58 (115)
Q Consensus 31 ~~N~~CaDCg~~~p~waS~~~GvflC~~ 58 (115)
|....|.+|+....-|+.+.-|.+-|-+
T Consensus 32 ~~~~~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 32 PCGWKCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp CCBCCCSSSSCCSSEEEETTTCCEEECC
T ss_pred CCCCcCccccCcCceEEeccCCccccCc
Confidence 4566899999998888877777777644
No 84
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A*
Probab=20.13 E-value=19 Score=27.09 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=17.0
Q ss_pred Ceeeeeccchhhhhcccccc
Q psy6973 45 TWASLNLGLLLCIQCCGVHR 64 (115)
Q Consensus 45 ~waS~~~GvflC~~CsgiHR 64 (115)
.|+-+-.|++.|.+|.||--
T Consensus 20 ~~~gtY~G~LPCADC~GI~t 39 (233)
T 2z4i_A 20 PMPQSWRGVLPCADCEGIET 39 (233)
T ss_dssp CCCCEEEEEEEETTEEEEEE
T ss_pred CcccEEeEEEECCCCCCeEE
Confidence 57778889999999999743
Done!