RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6973
(115 letters)
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf.
Putative zinc fingers with GTPase activating proteins
(GAPs) towards the small GTPase, Arf. The GAP of ARD1
stimulates GTPase hydrolysis for ARD1 but not ARFs.
Length = 117
Score = 95.8 bits (239), Expect = 6e-27
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 23 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 82
L+ +R ++PGN CADC PTWASLNLG+ +CI+C GVHR LG H+S+VRSL LD+W
Sbjct: 4 LRELR-KLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKWT 62
Query: 83 LNLGLLLCIQCCG 95
L ++ G
Sbjct: 63 PE--QLEFMKAGG 73
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the
small GTPase, ARF. Putative zinc fingers with GTPase
activating proteins (GAPs) towards the small GTPase,
Arf. The GAP of ARD1 stimulates GTPase hydrolysis for
ARD1 but not ARFs.
Length = 119
Score = 86.2 bits (214), Expect = 3e-23
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 23 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 82
L+ +RS +PGN C DC PTWAS+NLG+ LCI+C G+HR LG H+S+VRSL LD W
Sbjct: 1 LKLLRS-IPGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWT 59
Query: 83 LNLGLLLC 90
LL
Sbjct: 60 EEELRLLQ 67
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs
(ADP-ribosylation factors), involved in ARF-mediated
vesicular transport [Intracellular trafficking and
secretion].
Length = 319
Score = 90.2 bits (224), Expect = 5e-23
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 16 SSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRS 75
+ E L + N CADC PTWAS+NLG+ LCI C GVHR LG H+S+V+S
Sbjct: 3 TKSEDRKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKS 62
Query: 76 LELDEW 81
L LD W
Sbjct: 63 LTLDNW 68
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating
protein AGD10; Provisional.
Length = 395
Score = 70.7 bits (172), Expect = 1e-15
Identities = 27/49 (55%), Positives = 30/49 (61%)
Query: 33 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW 81
N C DC PTWAS+ G+ LCI C VHR LG H+S VRS LD W
Sbjct: 22 NKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSW 70
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional.
Length = 705
Score = 38.6 bits (89), Expect = 2e-04
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 29 RVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW 81
++P N C +C GP + N +C+ C G+HR RV+S+ + ++
Sbjct: 19 KLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHR---EFTHRVKSVSMSKF 68
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor
GTPase-activating protein AGD14; Provisional.
Length = 648
Score = 37.5 bits (86), Expect = 5e-04
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 29 RVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW 81
++P N C +C GP + +C+ C G+HR RV+S+ + ++
Sbjct: 19 KLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHR---EFTHRVKSVSMSKF 68
>gnl|CDD|223043 PHA03323, PHA03323, nuclear egress membrane protein UL34;
Provisional.
Length = 272
Score = 28.5 bits (64), Expect = 0.75
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 23 LQSIRSRVPGNLTCADCAEAGPTWAS 48
+Q IR VPGNL C + +AG
Sbjct: 15 IQRIRLVVPGNLRCGEG-DAGLYEPK 39
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 27.2 bits (61), Expect = 2.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 20 TASLQSIRSRVPGNLTCADCAEAGP 44
A+LQ+IR V A C E GP
Sbjct: 838 IAALQAIRLAVRDARKVATCLEFGP 862
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 26.6 bits (59), Expect = 3.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 61 GVHRCLGAHVSR 72
G HRCLGA ++R
Sbjct: 355 GPHRCLGAALAR 366
Score = 26.6 bits (59), Expect = 3.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 95 GVHRCLGAHVSR 106
G HRCLGA ++R
Sbjct: 355 GPHRCLGAALAR 366
>gnl|CDD|130507 TIGR01440, TIGR01440, TIGR01440 family protein. Members of this
family are uncharacterized proteins of about 180 amino
acids from the Bacillus/Clostridium group of
Gram-positive bacteria, found in no more than one copy
per genome [Hypothetical proteins, Conserved].
Length = 172
Score = 25.9 bits (57), Expect = 4.2
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 55 LCIQCCGVHRCLGAHVSRVRSLELDEWPLNL--------GLLLCIQCCGVHRCLGAHVSR 106
L + C +G + S+E+ E +N G+ L Q C H++R
Sbjct: 21 LFVIGCSTSEVIGGKIGTNSSMEVAETIVNALDVVLKKTGVTLAFQGC-------EHINR 73
Query: 107 VRFLELDE 114
+E
Sbjct: 74 ALVMERSV 81
>gnl|CDD|204544 pfam10712, NAD-GH, NAD-specific glutamate dehydrogenase. The
members of this are annotated as being NAD-specific
glutamate dehydrogenase encoded in antisense gene pair
with DnaK-J. However, this could not be confirmed.
Length = 574
Score = 25.7 bits (57), Expect = 6.7
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 66 LGAHVSRVRSLELDEWPLNLGLLLCIQC-----CGVHRCL-----GAHVSRVRFLEL 112
L V R R + DE ++ GLL Q + L A V V LEL
Sbjct: 281 LHVEVLRTRVVGGDERQVDFGLLRGRQLDLGLFGRFLQTLQGQLVLAQVDAVLLLEL 337
>gnl|CDD|239216 cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III
subfamily. Heme-copper oxidases are transmembrane
protein complexes in the respiratory chains of
prokaryotes and mitochondria which couple the reduction
of molecular oxygen to water to, proton pumping across
the membrane. The heme-copper oxidase superfamily is
diverse in terms of electron donors, subunit
composition, and heme types. This superfamily includes
cytochrome c and ubiquinol oxidases. Bacterial
oxidases typically contain 3 or 4 subunits in contrast
to the 13 subunit bovine cytochrome c oxidase (CcO).
Subunits I, II, and III of mammalian CcO are encoded
within the mitochondrial genome and the remaining 10
subunits are encoded within the nuclear genome.
Subunits I, II and III of ubiquinol oxidase are
homologous to the corresponding subunits in CcO.
Although not required for catalytic activity, subunit
III is believed to play a role in assembly of the
multimer complex. Rhodobacter CcO subunit III
stabilizes the integrity of the binuclear center in
subunit I. It has been proposed that Archaea acquired
heme-copper oxidases through gene transfer from
Gram-positive bacteria.
Length = 184
Score = 25.0 bits (55), Expect = 8.9
Identities = 12/50 (24%), Positives = 14/50 (28%), Gaps = 7/50 (14%)
Query: 42 AGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLLLCI 91
P SLN +L + A R L LGL L
Sbjct: 47 PLPNLLSLNTAVLAAS-SVAMQWARRAARRNRRVLAR------LGLALAG 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.463
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,253,601
Number of extensions: 406239
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 18
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)