RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6973
(115 letters)
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein
trafficking, hydrolase AC; 2.40A {Plasmodium falciparum
3D7}
Length = 163
Score = 103 bits (259), Expect = 7e-30
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 15 QSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVR 74
++ + ++ N C DC + P W S+N G+ LCI C GVHR LG H+S VR
Sbjct: 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVR 63
Query: 75 SLELDEWP 82
S+++D +
Sbjct: 64 SIKMDIFT 71
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 107 bits (268), Expect = 2e-29
Identities = 35/78 (44%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 5 LNKGNGKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 64
L G + + ++ V GN C DC E P WAS+NLG+ LCIQC G+HR
Sbjct: 18 LGSGGMARGREPGGVGHVVAQVQ-SVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHR 76
Query: 65 CLGAHVSRVRSLELDEWP 82
LG H S+VRSL LD W
Sbjct: 77 SLGVHFSKVRSLTLDSWE 94
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural
genomics, structural genomics consortium, SGC, protein
transport; 1.90A {Homo sapiens}
Length = 134
Score = 101 bits (252), Expect = 4e-29
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 10 GKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAH 69
GKS A L ++ N CADC GP WAS N+G+ +CI+C G+HR LG H
Sbjct: 5 GKSVKDVDRYQAVLANLL-LEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVH 63
Query: 70 VSRVRSLELDEWP 82
+SRV+S+ LD+W
Sbjct: 64 ISRVKSVNLDQWT 76
>2owa_A Arfgap-like finger domain containing protein; zinc finger
protein, cysteine-rich motif, GTPase activation; 2.00A
{Cryptosporidium parvum iowa II}
Length = 138
Score = 100 bits (250), Expect = 9e-29
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 9 NGKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGA 68
+ K + + Q +R+R P N TC DC PTW SL+ + +C+ C HR +G
Sbjct: 13 DEKGFVSDKLRDNFFQIVRNR-PENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGV 71
Query: 69 HVSRVRSLELDEWP 82
H+S VRS +LD++
Sbjct: 72 HISFVRSSDLDKFT 85
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 99 bits (249), Expect = 2e-28
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 10 GKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAH 69
GK++ + L + R N CADC GP WAS N+G+ +CI+C G+HR LG H
Sbjct: 7 GKAQKLNEQHQLILSKLL-REEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVH 65
Query: 70 VSRVRSLELDEWP 82
+SRV+S+ LD+W
Sbjct: 66 ISRVKSVNLDQWT 78
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 104 bits (260), Expect = 4e-28
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 8 GNGKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLG 67
G Q ++ + + PGN CADC P WAS LG+ +C+ C G+HR +
Sbjct: 10 GRENLYFQGKERRRAVLELL-QRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP 68
Query: 68 AHVSRVRSLELDEWP 82
VS+V+S+ LD W
Sbjct: 69 -QVSKVKSVRLDAWE 82
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics
consortium, SGC, metal binding protein; 2.06A {Homo
sapiens}
Length = 301
Score = 101 bits (254), Expect = 9e-28
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 7 KGNGKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCL 66
+G+G + + ++ PGN C DC A PTW S NLG+L CIQC GVHR L
Sbjct: 17 RGSGHDGEPHDLTKLLIAEVK-SRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHREL 75
Query: 67 GAHVSRVRSLELDEWP 82
G SR++SL LD
Sbjct: 76 GVRFSRMQSLTLDLLG 91
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin
repeats, metal binding protein; 2.10A {Mus musculus}
SCOP: d.211.1.1 g.45.1.1
Length = 278
Score = 101 bits (253), Expect = 9e-28
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 21 ASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE 80
+ ++ R+ GN C DC PTW S NLG+L CI+C G+HR LG H SR++SL LD
Sbjct: 6 EIISEVQ-RMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 64
Query: 81 WP 82
Sbjct: 65 LG 66
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP,
structural genomics consorti ER-golgi transport, golgi
apparatus, GTPase activation; 2.40A {Homo sapiens}
Length = 147
Score = 96.9 bits (241), Expect = 3e-27
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 10 GKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAH 69
+ + S L+ +R + N C +C P W S+ G+ +C++C G HR LG H
Sbjct: 16 PRGSMASPRTRKVLKEVRVQ-DENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVH 74
Query: 70 VSRVRSLELDEW 81
+S VRS+ +D+W
Sbjct: 75 LSFVRSVTMDKW 86
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 102 bits (255), Expect = 5e-27
Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 23 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 82
+ ++ PGN C DC A PTW S NLG+L CIQC GVHR LG SR++SL LD
Sbjct: 14 IAEVK-SRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLG 72
Query: 83 LNLGLLLC 90
+ LL
Sbjct: 73 PSELLLAL 80
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3;
arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 149
Score = 90.4 bits (224), Expect = 1e-24
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 9 NGKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGA 68
+G + +RS P N C DC P+WAS+ G+ LCI C G HR LG
Sbjct: 6 SGMGDPSKQDILTIFKRLRSV-PTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGV 64
Query: 69 HVSRVRSLELDE-WP 82
H+S +RS ELD W
Sbjct: 65 HLSFIRSTELDSNWS 79
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein,
REV-interacting protein, human immunodeficiency virus,
AIDS, structural genomics; 1.48A {Homo sapiens} PDB:
2d9l_A
Length = 140
Score = 89.9 bits (223), Expect = 1e-24
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 8 GNGKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLG 67
G+ R Q L+ + P N C DC + GPT+ ++ +G +C C G R L
Sbjct: 1 GSSAKRKQEEKHLKMLRDMTGL-PHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLN 59
Query: 68 AHVSRVRSLELDEWP 82
RV+S+ + +
Sbjct: 60 PP-HRVKSISMTTFT 73
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural
genomics, structural genomics consortium, SGC, metal
binding protein; 1.80A {Homo sapiens}
Length = 144
Score = 89.6 bits (222), Expect = 2e-24
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 9 NGKSRLQSSVETASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGA 68
G + + + +R+ P N C DC P+WAS+ G+ LCI C GVHR LG
Sbjct: 14 RGSAEPNKTEIQTLFKRLRAV-PTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGV 72
Query: 69 HVSRVRSLELDE-WP 82
H+S +RS ELD W
Sbjct: 73 HLSFIRSTELDSNWN 87
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 81.1 bits (200), Expect = 1e-19
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 23 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW 81
L+ +R + N C +C P W S+ G+ +C++C G HR LG H+S VRS+ +D+W
Sbjct: 28 LKEVRVQ-DENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKW 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.004
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 23/114 (20%)
Query: 7 KGNGKSRLQSSVETASLQSIRSRVPGN---LTCADCAEAGPTWASLNLGLLLCIQCCGVH 63
G+GK+ + +++ ++ ++ L +C L L Q
Sbjct: 159 LGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNW 213
Query: 64 RCLGAHVSRVRSLELDEWPLNLGLLLCIQCCGVH-RCLGAHVSRVRFLELDE-W 115
H S ++ L + L LL + + CL L L
Sbjct: 214 TSRSDHSSNIK-LRIHSIQAELRRLLKSK---PYENCL---------LVLLNVQ 254
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 30.3 bits (69), Expect = 0.10
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+HRC+G ++ ++L
Sbjct: 372 GIHRCVGNRLAE---MQL 386
Score = 30.3 bits (69), Expect = 0.10
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+HRC+G ++ ++L
Sbjct: 372 GIHRCVGNRLAE---MQL 386
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 30.3 bits (69), Expect = 0.11
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H CLG H++R E+
Sbjct: 354 GSHLCLGQHLAR---REI 368
Score = 30.3 bits (69), Expect = 0.11
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H CLG H++R E+
Sbjct: 354 GSHLCLGQHLAR---REI 368
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 30.4 bits (69), Expect = 0.11
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G HRC G H++R LE+
Sbjct: 361 GPHRCAGMHLAR---LEV 375
Score = 30.4 bits (69), Expect = 0.11
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G HRC G H++R LE+
Sbjct: 361 GPHRCAGMHLAR---LEV 375
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 30.4 bits (69), Expect = 0.11
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H CLG H+++ LE+
Sbjct: 373 GAHMCLGQHLAK---LEM 387
Score = 30.4 bits (69), Expect = 0.11
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H CLG H+++ LE+
Sbjct: 373 GAHMCLGQHLAK---LEM 387
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 30.0 bits (68), Expect = 0.12
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G HRC G H++R +E+
Sbjct: 360 GPHRCAGMHLAR---MEV 374
Score = 30.0 bits (68), Expect = 0.12
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G HRC G H++R +E+
Sbjct: 360 GPHRCAGMHLAR---MEV 374
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 30.0 bits (68), Expect = 0.14
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H C+GA+++R + +
Sbjct: 373 GAHYCIGANLAR---MTI 387
Score = 30.0 bits (68), Expect = 0.14
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H C+GA+++R + +
Sbjct: 373 GAHYCIGANLAR---MTI 387
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 29.6 bits (67), Expect = 0.16
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H+CLG H++R LE+
Sbjct: 395 GSHQCLGLHLAR---LEM 409
Score = 29.6 bits (67), Expect = 0.16
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H+CLG H++R LE+
Sbjct: 395 GSHQCLGLHLAR---LEM 409
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 29.6 bits (67), Expect = 0.19
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H CLGA+++R E+
Sbjct: 382 GAHFCLGANLAR---REI 396
Score = 29.6 bits (67), Expect = 0.19
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H CLGA+++R E+
Sbjct: 382 GAHFCLGANLAR---REI 396
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 29.5 bits (67), Expect = 0.19
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+HRCLGAH+ R +E
Sbjct: 337 GIHRCLGAHLIR---VEA 351
Score = 29.5 bits (67), Expect = 0.19
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+HRCLGAH+ R +E
Sbjct: 337 GIHRCLGAHLIR---VEA 351
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 29.5 bits (67), Expect = 0.20
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G HRC+GA ++R +E+
Sbjct: 341 GAHRCVGAGLAR---MEV 355
Score = 29.5 bits (67), Expect = 0.20
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G HRC+GA ++R +E+
Sbjct: 341 GAHRCVGAGLAR---MEV 355
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 29.1 bits (66), Expect = 0.30
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 13/33 (39%)
Query: 61 GVHRCLGAH-------------VSRVRSLELDE 80
G+H CLGA + R E+ +
Sbjct: 313 GIHLCLGAPLARLEARIALEEFAKKFRVKEIVK 345
Score = 28.3 bits (64), Expect = 0.52
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H CLGA ++R LE
Sbjct: 313 GIHLCLGAPLAR---LEA 327
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 28.8 bits (65), Expect = 0.35
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+H CLG+ ++R +EL
Sbjct: 360 GMHHCLGSALAR---IEL 374
Score = 28.8 bits (65), Expect = 0.35
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H CLG+ ++R +EL
Sbjct: 360 GMHHCLGSALAR---IEL 374
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 28.7 bits (65), Expect = 0.37
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 13/33 (39%)
Query: 61 GVHRCLGAH-------------VSRVRSLELDE 80
G+H CLGA R R +E+ +
Sbjct: 313 GIHLCLGAPLARLEARIAIEEFSKRFRHIEILD 345
Score = 28.3 bits (64), Expect = 0.52
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H CLGA ++R LE
Sbjct: 313 GIHLCLGAPLAR---LEA 327
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 28.4 bits (64), Expect = 0.49
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
GVH+C+G H++R LEL
Sbjct: 356 GVHQCVGQHLAR---LEL 370
Score = 28.4 bits (64), Expect = 0.49
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
GVH+C+G H++R LEL
Sbjct: 356 GVHQCVGQHLAR---LEL 370
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 28.4 bits (64), Expect = 0.52
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H+CLG +++R +EL
Sbjct: 352 GPHQCLGQNLAR---MEL 366
Score = 28.4 bits (64), Expect = 0.52
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H+CLG +++R +EL
Sbjct: 352 GPHQCLGQNLAR---MEL 366
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 28.3 bits (64), Expect = 0.54
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G HRC+ H+++ EL
Sbjct: 349 GDHRCIAEHLAK---AEL 363
Score = 28.3 bits (64), Expect = 0.54
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G HRC+ H+++ EL
Sbjct: 349 GDHRCIAEHLAK---AEL 363
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 28.4 bits (64), Expect = 0.56
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H C G+ + R
Sbjct: 341 GQHFCPGSALGR---RHA 355
Score = 28.4 bits (64), Expect = 0.56
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H C G+ + R
Sbjct: 341 GQHFCPGSALGR---RHA 355
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 28.0 bits (63), Expect = 0.61
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H C GA +SR +E
Sbjct: 351 GPHVCPGAALSR---MEA 365
Score = 28.0 bits (63), Expect = 0.61
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H C GA +SR +E
Sbjct: 351 GPHVCPGAALSR---MEA 365
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 28.0 bits (63), Expect = 0.61
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+ C+GA ++R LEL
Sbjct: 349 GIWHCIGAPLAR---LEL 363
Score = 28.0 bits (63), Expect = 0.61
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+ C+GA ++R LEL
Sbjct: 349 GIWHCIGAPLAR---LEL 363
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 28.0 bits (63), Expect = 0.61
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H+C+G ++R +EL
Sbjct: 344 GAHQCIGQQLAR---IEL 358
Score = 28.0 bits (63), Expect = 0.61
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H+C+G ++R +EL
Sbjct: 344 GAHQCIGQQLAR---IEL 358
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 28.0 bits (63), Expect = 0.65
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H C GA ++R ++
Sbjct: 352 GHHFCTGAVLAR---MQT 366
Score = 28.0 bits (63), Expect = 0.65
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H C GA ++R ++
Sbjct: 352 GHHFCTGAVLAR---MQT 366
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 28.0 bits (63), Expect = 0.67
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+H+CLG +++R EL
Sbjct: 349 GIHQCLGQNLAR---AEL 363
Score = 28.0 bits (63), Expect = 0.67
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H+CLG +++R EL
Sbjct: 349 GIHQCLGQNLAR---AEL 363
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 28.0 bits (63), Expect = 0.68
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H C G ++R LE
Sbjct: 349 GPHYCPGGMLAR---LES 363
Score = 28.0 bits (63), Expect = 0.68
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H C G ++R LE
Sbjct: 349 GPHYCPGGMLAR---LES 363
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 28.0 bits (63), Expect = 0.70
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
GVH CLGA ++R +E+
Sbjct: 350 GVHFCLGAPLAR---MEV 364
Score = 28.0 bits (63), Expect = 0.70
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
GVH CLGA ++R +E+
Sbjct: 350 GVHFCLGAPLAR---MEV 364
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 28.0 bits (63), Expect = 0.71
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
GVH CLGA ++R LEL
Sbjct: 343 GVHHCLGAALAR---LEL 357
Score = 28.0 bits (63), Expect = 0.71
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
GVH CLGA ++R LEL
Sbjct: 343 GVHHCLGAALAR---LEL 357
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 28.0 bits (63), Expect = 0.72
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+H C+GA ++R L
Sbjct: 352 GIHYCVGAALAR---SML 366
Score = 28.0 bits (63), Expect = 0.72
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H C+GA ++R L
Sbjct: 352 GIHYCVGAALAR---SML 366
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 28.0 bits (63), Expect = 0.76
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
GVH CLGA ++R +EL
Sbjct: 362 GVHHCLGAPLAR---VEL 376
Score = 28.0 bits (63), Expect = 0.76
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
GVH CLGA ++R +EL
Sbjct: 362 GVHHCLGAPLAR---VEL 376
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 28.0 bits (63), Expect = 0.77
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
GVH+CLG +++R LEL
Sbjct: 351 GVHQCLGQNLAR---LEL 365
Score = 28.0 bits (63), Expect = 0.77
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
GVH+CLG +++R LEL
Sbjct: 351 GVHQCLGQNLAR---LEL 365
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 27.6 bits (62), Expect = 0.87
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H CLG ++R LEL
Sbjct: 336 GTHFCLGNQLAR---LEL 350
Score = 27.6 bits (62), Expect = 0.87
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H CLG ++R LEL
Sbjct: 336 GTHFCLGNQLAR---LEL 350
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
barrel, glycos hydrolase, membrane, palmitate; HET: P4G;
1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Length = 642
Score = 27.6 bits (61), Expect = 0.91
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 1 GNEILNKGNGKSRLQSSVETASLQSIRSRVPGNLTCADCAEAG 43
G IL N K+ Q+ T Q ++P + D E G
Sbjct: 87 GGIILFAENVKTTKQTVQLTDDYQKASPKIPL-MLSID-QEGG 127
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 27.6 bits (62), Expect = 0.95
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+H C+GA ++R L+L
Sbjct: 328 GIHHCIGAPLAR---LQL 342
Score = 27.6 bits (62), Expect = 0.95
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H C+GA ++R L+L
Sbjct: 328 GIHHCIGAPLAR---LQL 342
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 27.6 bits (62), Expect = 0.97
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 13/33 (39%)
Query: 61 GVHRCLGAH-------------VSRVRSLELDE 80
GVH C+G +V ++E+
Sbjct: 357 GVHMCVGQLVARLEGEVVLAALARKVAAIEIAG 389
Score = 27.2 bits (61), Expect = 1.1
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
GVH C+G V+R LE
Sbjct: 357 GVHMCVGQLVAR---LEG 371
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 27.5 bits (62), Expect = 1.0
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+H CLGA ++R LE
Sbjct: 291 GIHMCLGAPLAR---LEA 305
Score = 27.5 bits (62), Expect = 1.0
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H CLGA ++R LE
Sbjct: 291 GIHMCLGAPLAR---LEA 305
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding,
recombination,replication; 2.00A {Deinococcus
radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Length = 244
Score = 27.5 bits (61), Expect = 1.0
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 36 CADCAEAGPTWASLNLGLLLCIQC 59
CA C P G LLC +C
Sbjct: 153 CARCGAPDPEHPDPLGGQLLCSKC 176
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 27.2 bits (61), Expect = 1.1
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+H C+GA ++R LE
Sbjct: 370 GIHFCIGAPLAR---LEA 384
Score = 27.2 bits (61), Expect = 1.1
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H C+GA ++R LE
Sbjct: 370 GIHFCIGAPLAR---LEA 384
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 27.2 bits (61), Expect = 1.2
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H CLGA +R ++
Sbjct: 357 GAHHCLGAAAAR---MQC 371
Score = 27.2 bits (61), Expect = 1.2
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H CLGA +R ++
Sbjct: 357 GAHHCLGAAAAR---MQC 371
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 27.2 bits (61), Expect = 1.2
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+H C+G +++ LE
Sbjct: 347 GIHFCMGRPLAK---LEG 361
Score = 27.2 bits (61), Expect = 1.2
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H C+G +++ LE
Sbjct: 347 GIHFCMGRPLAK---LEG 361
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 27.2 bits (61), Expect = 1.3
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+H CLGA ++R LE
Sbjct: 343 GIHFCLGAQLAR---LEG 357
Score = 27.2 bits (61), Expect = 1.3
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H CLGA ++R LE
Sbjct: 343 GIHFCLGAQLAR---LEG 357
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 27.3 bits (61), Expect = 1.3
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 13/33 (39%)
Query: 61 GVHRCLGAH-------------VSRVRSLELDE 80
G+H C+G + ++R++ L+E
Sbjct: 385 GIHNCVGTAFAKNEIEIVANIVLDKMRNIRLEE 417
Score = 26.5 bits (59), Expect = 2.3
Identities = 5/18 (27%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H C+G ++ E+
Sbjct: 385 GIHNCVGTAFAK---NEI 399
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 27.2 bits (61), Expect = 1.4
Identities = 8/33 (24%), Positives = 9/33 (27%), Gaps = 13/33 (39%)
Query: 61 GVHRCLGAH-------------VSRVRSLELDE 80
G H C G R +EL E
Sbjct: 341 GPHSCAGQIISRAEATTVFAVLAERYERIELAE 373
Score = 26.8 bits (60), Expect = 1.5
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H C G +SR E
Sbjct: 341 GPHSCAGQIISR---AEA 355
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 26.8 bits (60), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
GVH CLGA ++R LE
Sbjct: 349 GVHFCLGAPLAR---LEN 363
Score = 26.8 bits (60), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
GVH CLGA ++R LE
Sbjct: 349 GVHFCLGAPLAR---LEN 363
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 26.4 bits (59), Expect = 2.0
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H CLG ++R LEL
Sbjct: 361 GPHFCLGTALAR---LEL 375
Score = 26.4 bits (59), Expect = 2.0
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H CLG ++R LEL
Sbjct: 361 GPHFCLGTALAR---LEL 375
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 26.5 bits (59), Expect = 2.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 61 GVHRCLGAHVSRV 73
G H CLGA ++R+
Sbjct: 362 GAHFCLGAPLARL 374
Score = 26.5 bits (59), Expect = 2.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 95 GVHRCLGAHVSRV 107
G H CLGA ++R+
Sbjct: 362 GAHFCLGAPLARL 374
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 26.4 bits (59), Expect = 2.4
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+ CLG++++R +L
Sbjct: 339 GMRYCLGSYLAR---TQL 353
Score = 26.4 bits (59), Expect = 2.4
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+ CLG++++R +L
Sbjct: 339 GMRYCLGSYLAR---TQL 353
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 26.1 bits (58), Expect = 2.6
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H C G ++R LE
Sbjct: 361 GPHVCPGVSLAR---LEA 375
Score = 26.1 bits (58), Expect = 2.6
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H C G ++R LE
Sbjct: 361 GPHVCPGVSLAR---LEA 375
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 26.2 bits (58), Expect = 2.7
Identities = 1/13 (7%), Positives = 2/13 (15%)
Query: 61 GVHRCLGAHVSRV 73
H +
Sbjct: 328 RGHPGRLEELVTA 340
Score = 26.2 bits (58), Expect = 2.7
Identities = 1/13 (7%), Positives = 2/13 (15%)
Query: 95 GVHRCLGAHVSRV 107
H +
Sbjct: 328 RGHPGRLEELVTA 340
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G H CLG+ ++R LE
Sbjct: 340 GHHVCLGSSLAR---LEA 354
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G H CLG+ ++R LE
Sbjct: 340 GHHVCLGSSLAR---LEA 354
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 26.1 bits (58), Expect = 3.4
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 61 GVHRCLGAHVSRVRSLEL 78
G+H CLGA ++R E
Sbjct: 360 GIHYCLGATLAR---AEA 374
Score = 26.1 bits (58), Expect = 3.4
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 95 GVHRCLGAHVSRVRFLEL 112
G+H CLGA ++R E
Sbjct: 360 GIHYCLGATLAR---AEA 374
>2ida_A Hypothetical protein; zinc binding protein, structural genomics,
PSI-2, protein structure initiative; NMR
{Rhodopseudomonas palustris} SCOP: g.44.1.5
Length = 102
Score = 24.9 bits (54), Expect = 4.0
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 23 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQC 59
+ IR+ P L C +C + G W L +C C
Sbjct: 8 VAGIRTVTPSALGCEECLKIGSPWV----HLRICRTC 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.463
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,626,422
Number of extensions: 80387
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 129
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)