RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6973
(115 letters)
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 78.5 bits (193), Expect = 9e-21
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 29 RVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPLNLGLL 88
R+ GN C DC PTW S NLG+L CI+C G+HR LG H SR++SL LD + L
Sbjct: 11 RMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTS--EL 68
Query: 89 LCIQCCGVHRC 99
L + G
Sbjct: 69 LLAKNIGNAGF 79
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 26.9 bits (59), Expect = 0.29
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 23 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLC--IQCCG--VHRCLGAHVSR-----V 73
+ IR+ P L C +C + G W L + C + CC H+ H +
Sbjct: 8 VAGIRTVTPSALGCEECLKIGSPWVHLRIC-RTCGHVGCCDDSPHKHATRHFHATGHPII 66
Query: 74 RSLELDEW 81
+ E
Sbjct: 67 EGYDPPEG 74
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 25.5 bits (54), Expect = 1.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 61 GVHRCLGAHVSRV 73
G H CLG H++R
Sbjct: 343 GSHLCLGQHLARR 355
Score = 25.5 bits (54), Expect = 1.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 95 GVHRCLGAHVSRV 107
G H CLG H++R
Sbjct: 343 GSHLCLGQHLARR 355
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 25.5 bits (54), Expect = 1.8
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 61 GVHRCLGAHVSRV 73
G H CLG H++++
Sbjct: 373 GAHMCLGQHLAKL 385
Score = 25.5 bits (54), Expect = 1.8
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 95 GVHRCLGAHVSRV 107
G H CLG H++++
Sbjct: 373 GAHMCLGQHLAKL 385
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 25.2 bits (53), Expect = 2.7
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 61 GVHRCLGAHVSRV 73
G H C G ++R+
Sbjct: 342 GPHYCPGGMLARL 354
Score = 25.2 bits (53), Expect = 2.7
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 95 GVHRCLGAHVSRV 107
G H C G ++R+
Sbjct: 342 GPHYCPGGMLARL 354
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 24.7 bits (52), Expect = 3.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 61 GVHRCLGAHVSRV 73
G+H C+GA ++R
Sbjct: 349 GIHYCVGAALARS 361
Score = 24.7 bits (52), Expect = 3.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 95 GVHRCLGAHVSRV 107
G+H C+GA ++R
Sbjct: 349 GIHYCVGAALARS 361
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 24.8 bits (52), Expect = 3.6
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 61 GVHRCLGAHVSRV 73
G HRC+ H+++
Sbjct: 344 GDHRCIAEHLAKA 356
Score = 24.8 bits (52), Expect = 3.6
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 95 GVHRCLGAHVSRV 107
G HRC+ H+++
Sbjct: 344 GDHRCIAEHLAKA 356
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
C-terminal domain {Deinococcus radiodurans [TaxId:
1299]}
Length = 157
Score = 24.3 bits (52), Expect = 3.6
Identities = 10/47 (21%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 36 CADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 82
CA C P G LLC + C V +
Sbjct: 73 CARCGAPDPEHPDPLGGQLLCSK-CAALPPYPPAVLDFLRHAVRRTV 118
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 24.8 bits (52), Expect = 3.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 61 GVHRCLGAHVSRV 73
G+H CLGA ++R+
Sbjct: 313 GIHLCLGAPLARL 325
Score = 24.8 bits (52), Expect = 3.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 95 GVHRCLGAHVSRV 107
G+H CLGA ++R+
Sbjct: 313 GIHLCLGAPLARL 325
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 24.4 bits (51), Expect = 3.8
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 61 GVHRCLGAHVSRV 73
G H C G ++R+
Sbjct: 346 GPHVCPGVSLARL 358
Score = 24.4 bits (51), Expect = 3.8
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 95 GVHRCLGAHVSRV 107
G H C G ++R+
Sbjct: 346 GPHVCPGVSLARL 358
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 24.4 bits (51), Expect = 4.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 61 GVHRCLGAHVSRV 73
GVH CLGA ++R+
Sbjct: 339 GVHHCLGAALARL 351
Score = 24.4 bits (51), Expect = 4.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 95 GVHRCLGAHVSRV 107
GVH CLGA ++R+
Sbjct: 339 GVHHCLGAALARL 351
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 24.4 bits (51), Expect = 4.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 61 GVHRCLGAHVSRV 73
G+H CLGA ++R+
Sbjct: 313 GIHLCLGAPLARL 325
Score = 24.4 bits (51), Expect = 4.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 95 GVHRCLGAHVSRV 107
G+H CLGA ++R+
Sbjct: 313 GIHLCLGAPLARL 325
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 24.4 bits (51), Expect = 5.1
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 61 GVHRCLGAHVSRV 73
G+H C+G ++++
Sbjct: 345 GIHFCMGRPLAKL 357
Score = 24.4 bits (51), Expect = 5.1
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 95 GVHRCLGAHVSRV 107
G+H C+G ++++
Sbjct: 345 GIHFCMGRPLAKL 357
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 24.0 bits (50), Expect = 5.4
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 61 GVHRCLGAHVSRV 73
G H C G+ + R
Sbjct: 340 GQHFCPGSALGRR 352
Score = 24.0 bits (50), Expect = 5.4
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 95 GVHRCLGAHVSRV 107
G H C G+ + R
Sbjct: 340 GQHFCPGSALGRR 352
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 24.0 bits (50), Expect = 5.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 61 GVHRCLGAHVSRV 73
GVH CLGA ++R+
Sbjct: 344 GVHFCLGAPLARM 356
Score = 24.0 bits (50), Expect = 5.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 95 GVHRCLGAHVSRV 107
GVH CLGA ++R+
Sbjct: 344 GVHFCLGAPLARM 356
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 24.0 bits (50), Expect = 5.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 61 GVHRCLGAHVSRV 73
G H C GA +SR+
Sbjct: 344 GPHVCPGAALSRM 356
Score = 24.0 bits (50), Expect = 5.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 95 GVHRCLGAHVSRV 107
G H C GA +SR+
Sbjct: 344 GPHVCPGAALSRM 356
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.463
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 405,620
Number of extensions: 15866
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 33
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)