BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6976
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NMM|B Chain B, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1NMM|D Chain D, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1O0R|A Chain A, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
pdb|1O0R|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
Length = 286
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRA L NVG+ EA+K +++CF+F DVDLIP +D N Y C PRH+SVA+D + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N YWGWGGEDDD+ NR+ G+ + R I K M+
Sbjct: 170 YVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMI 229
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y V++ +++ L+T V +G S
Sbjct: 230 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS 286
>pdb|1FGX|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
pdb|1FGX|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
Length = 288
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRA L NVG+ EA+K +++CF+F DVDLIP +D N Y C PRH+SVA+D + LP
Sbjct: 112 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 171
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N YWGWGGEDDD+ NR+ G+ + R I K M+
Sbjct: 172 YVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKCRMI 231
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y V++ +++ L+T V +G S
Sbjct: 232 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS 288
>pdb|1FR8|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
pdb|1FR8|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
Length = 288
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRA L NVG+ EA+K +++CF+F DVDLIP +D N Y C PRH+SVA+D + LP
Sbjct: 112 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 171
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N YWGWGGEDDD+ NR+ G+ + R I K M+
Sbjct: 172 YVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKCRMI 231
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y V++ +++ L+T V +G S
Sbjct: 232 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS 288
>pdb|1NF5|B Chain B, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NF5|D Chain D, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NKH|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NKH|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NQI|B Chain B, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NQI|D Chain D, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NWG|B Chain B, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1NWG|D Chain D, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1O23|B Chain B, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1O23|D Chain D, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1OQM|B Chain B, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
pdb|1OQM|D Chain D, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
Length = 286
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRA L NVG+ EA+K +++CF+F DVDLIP +D N Y C PRH+SVA+D + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N YWGWGGEDDD+ NR+ G+ + R I K M+
Sbjct: 170 YVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKCRMI 229
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y V++ +++ L+T V +G S
Sbjct: 230 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS 286
>pdb|1YRO|B Chain B, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
pdb|1YRO|D Chain D, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
Length = 286
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FN+A L NVG+ EA+K +++CF+F DVDLIP +D N Y C PRH+SVA+D + LP
Sbjct: 110 FNKAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N YWGWGGEDDD+ NR+ G+ + R I K M+
Sbjct: 170 YVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMI 229
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y V++ +++ L+T V +G S
Sbjct: 230 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS 286
>pdb|2AE7|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AEC|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AES|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AH9|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2FY7|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-galactosyltransferase Mutant M339h In Apo Form
pdb|2FYA|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1, 4-Galactosyltransferase Mutant M339h Complex With
Manganese
pdb|2FYB|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-Galactosyltransferase Mutant M339h In Complex
With Mn And Udp-Galactose In Open Conformation
pdb|3EE5|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|4EE3|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE4|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE5|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EEA|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEG|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEM|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEO|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
Length = 287
Score = 173 bits (438), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRA L NVG+ EA+K ++ CF+F DVDLIP +D N Y C PRH+SVA+D + LP
Sbjct: 111 FNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLP 170
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N YWGWGGEDDD+ NR+ G+ I R + +
Sbjct: 171 YVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHI 230
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y+V+D +++ L+T V +G S
Sbjct: 231 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS 287
>pdb|1TVY|A Chain A, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TVY|B Chain B, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TW1|A Chain A, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW1|B Chain B, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW5|A Chain A, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|1TW5|B Chain B, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|2FYC|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
pdb|2FYC|D Chain D, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
Length = 286
Score = 172 bits (436), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 113/177 (63%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRA L NVG+ EA+K +++CF+F DVDLIP +D N Y C PRH+SVA+D + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N YWGWGGEDDD+ NR+ G+ + R I K +
Sbjct: 170 YVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRHI 229
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y V++ +++ L+T V +G S
Sbjct: 230 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS 286
>pdb|2FYD|B Chain B, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
pdb|2FYD|D Chain D, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
Length = 286
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 113/177 (63%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRA L NVG+ EA+K +++CF+F DVDLIP +D N Y C PRH+SVA+D + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N Y GWGGEDDD+ NR+ G+ + R I K M+
Sbjct: 170 YVQYFGGVSALSKQQFLSINGFPNNYCGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMI 229
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y V++ +++ L+T V +G S
Sbjct: 230 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTCS 286
>pdb|1PZY|B Chain B, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZY|D Chain D, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZT|A Chain A, Crystal Structure Of W314a-beta-1,4-galactosyltransferase
(b4gal-t1) Catalytic Domain Without Substrate
Length = 286
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 113/177 (63%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRA L NVG+ EA+K +++CF+F DVDLIP +D N Y C PRH+SVA+D + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N YWG GGEDDD+ NR+ G+ + R I K M+
Sbjct: 170 YVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMI 229
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y V++ +++ L+T V +G S
Sbjct: 230 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS 286
>pdb|1NHE|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp
pdb|1NHE|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp
Length = 286
Score = 170 bits (431), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 111/177 (62%), Gaps = 3/177 (1%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRA L NVG+ EA+K +++CF+F DVDLIP +D N Y C PRH+SVA D + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPXNDHNTYRCFSQPRHISVAXDKFGFSLP 169
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
Y FGGV AL+K+ F +NGF N YWGWGGEDDD+ NR+ G + R I K +
Sbjct: 170 YVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGXSVSRPNAVIGKCRXI 229
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
RH ++K NPQR++++ + DGL SL Y V++ +++ L+T V +G S
Sbjct: 230 RHSRDKKNEPNPQRFDRIAHTKETXLSDGLNSLTYXVLEVQRYPLYTKITVDIGTPS 286
>pdb|3LW6|A Chain A, Crystal Structure Of Drosophila
Beta1,4-Galactosyltransferas
Length = 287
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 10/162 (6%)
Query: 4 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
FNRASL NVG+ A + +D HDVDL+P +D LY P + +A ++ +
Sbjct: 97 FNRASLINVGFQFASDV--YDYIAMHDVDLLPLNDNLLYEYPSSLGPLHIAGPKLHPKYH 154
Query: 64 YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIA----- 118
Y + GG+ + +EHF+ +NG SN+YWGWG EDD+ R++ AGLQ+ R P +I
Sbjct: 155 YDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTR-PQNIKTGTND 213
Query: 119 KYSML--RHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVI 158
+S + R+ +++ + + + KR K GL ++KYK++
Sbjct: 214 TFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKTGLDNVKYKIL 255
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 57 SMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPD 116
++ R P ++ GG+ ++++++FQ + + WGGE+ ++S R+ G + +
Sbjct: 196 TLPVRTP--TMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTL-----E 248
Query: 117 IAKYSMLRHRKEKANP 132
I S + H KA P
Sbjct: 249 IVTCSHVGHVFRKATP 264
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 34 IPEDDRNLYTCPGMPRHMSVAVDSMNYRLPY--ASLFGGVCALNKEHFQLVNGFSNEYW- 90
+P+ + N + VA+D+ + + + +F G C H ++ G+ +YW
Sbjct: 111 VPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGKDYWI 170
Query: 91 -------GWGGEDDDMSNRVKAAGL-QIIRYP 114
WG + RV GL I R P
Sbjct: 171 VRNSWGRHWGEQGYTRMKRVGGCGLCGIARLP 202
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 59 NYRL---PYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAG 107
N RL P+ GG A K+ F E+ WGGED++ R+ G
Sbjct: 264 NLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 315
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 59 NYRL---PYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAG 107
N RL P+ GG A K+ F E+ WGGED++ R+ G
Sbjct: 265 NLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 316
>pdb|2K75|A Chain A, Solution Nmr Structure Of The Ob Domain Of Ta0387 From
Thermoplasma Acidophilum. Northeast Structural Genomics
Consortium Target Tar80b
Length = 106
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 53 VAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQI 110
V + ++ PY S+ G + ++K+ ++ + Y G+ EDD R+ + G Q+
Sbjct: 4 VKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGY-IEDDTARIRISSFGKQL 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,620,323
Number of Sequences: 62578
Number of extensions: 224000
Number of successful extensions: 429
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 18
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)