RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6976
(177 letters)
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 173 bits (440), Expect = 9e-55
Identities = 80/176 (45%), Positives = 111/176 (63%), Gaps = 3/176 (1%)
Query: 2 HPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYR 61
FNRA L NVG+ EA+K ++ CF+F DVDLIP +D N Y C PRH+SVA+D +
Sbjct: 109 TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFS 168
Query: 62 LPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYS 121
LPY FGGV AL+K+ F +NGF N YWGWGGEDDD+ NR+ G+ I R +
Sbjct: 169 LPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTR 228
Query: 122 MLRHRKEKA---NPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 174
+RH ++K NPQR++++ + DGL SL Y+V+D +++ L+T V +G
Sbjct: 229 HIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIG 284
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 161 bits (407), Expect = 1e-49
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 3 PFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRL 62
FNRASL NVG+ A +D HDVDL+P +D LY P + +A ++ +
Sbjct: 96 RFNRASLINVGFQFASD--VYDYIAMHDVDLLPLNDNLLYEYPSSLGPLHIAGPKLHPKY 153
Query: 63 PYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR-YPPDIAKYS 121
Y + GG+ + +EHF+ +NG SN+YWGWG EDD+ R++ AGLQ+ R
Sbjct: 154 HYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTND 213
Query: 122 MLRHRKEKANPQR-----YEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEV 176
H + + +R + + KR K GL ++KYK++ L V + +
Sbjct: 214 TFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKTGLDNVKYKILK-VHEMLIDQVPVTILNI 272
Query: 177 S 177
Sbjct: 273 L 273
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 41.7 bits (97), Expect = 5e-05
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 26 FIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGF 85
+F + PE R+ P P + P + GG+ ++K +F+ + +
Sbjct: 208 LVFKWDYMTPEQRRSRQGNPVAP-----------IKTPMIA--GGLFVMDKFYFEELGKY 254
Query: 86 SNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKR 144
WGGE+ ++S RV G + P + R + P +++ + R
Sbjct: 255 DMMMDVWGGENLEISFRVWQCGGSLE-IIPCSRVGHVFRKQHPYTFPGGSGTVFARNTR 312
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 36.7 bits (84), Expect = 0.002
Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 48 PRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAG 107
R M + ++ GG+ ++++++FQ + + WGGE+ ++S R+ G
Sbjct: 185 QREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCG 244
Query: 108 LQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRY 145
+ + R P ++ + + R
Sbjct: 245 GT-LEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRR 281
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 36.1 bits (83), Expect = 0.004
Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 3/125 (2%)
Query: 47 MPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAA 106
H + P+ GG A K+ F E+ WGGED++ R+
Sbjct: 256 RIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYRE 315
Query: 107 GLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLF 166
G +A + + K N + + + + K + L
Sbjct: 316 GCYFRSVEGAMAYH---QEPPGKENETDRAAGKNITVQLLQQKVPYFYRKKEKIESATLK 372
Query: 167 TWFLV 171
LV
Sbjct: 373 RVPLV 377
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 35.2 bits (80), Expect = 0.009
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 26 FIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGF 85
+ + + PE + + P M+ GG+ A++++ F + G+
Sbjct: 259 MYYKRIPIPPELQKADPSDPFESPVMA----------------GGLFAVDRKWFWELGGY 302
Query: 86 SNEYWGWGGEDDDMSNRVKAAGLQIIRYP 114
WGGE ++S +V G ++ P
Sbjct: 303 DPGLEIWGGEQYEISFKVWMCGGRMEDIP 331
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.075
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 128 EKANPQRYEKLYSGHKRYKKDGLTSLKYK 156
EK Q +KL + K Y D +L K
Sbjct: 18 EK---QALKKLQASLKLYADDSAPALAIK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.78
Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 47/156 (30%)
Query: 33 LIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGW 92
L P + R ++ +SV S + +P L + W
Sbjct: 366 LEPAEYRKMF------DRLSVFPPSAH--IPTILL----SLI---------------WFD 398
Query: 93 GGEDDDMS--NRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKL-------YSGHK 143
+ D M N++ L + + P + + + K + L Y+ K
Sbjct: 399 VIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 144 RYKKDGLTS----------LKYKVIDTKQHKLFTWF 169
+ D L + + + + + + T F
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 28.8 bits (64), Expect = 1.2
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 69 GGVCAL-NKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRK 127
G + ++ + + G + +D D R G + P A + M K
Sbjct: 366 GWWTCMIPRQVAEEL-GQPLPLFIKW-DDADYGLRAAEHGYPTV-TLPGAAIWHMAWSDK 422
Query: 128 EKANP-QRY 135
+ A Q Y
Sbjct: 423 DDAIDWQAY 431
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA)
sandwich, glutaredoxin fold, oxidoreductase; 1.41A
{Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Length = 187
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 132 PQRYEKLYSGHKRYKKDGLTSL 153
YE + + +YK G T L
Sbjct: 62 KGGYETATTLYNKYKSQGFTVL 83
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione,
dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Length = 190
Score = 26.1 bits (58), Expect = 5.8
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 132 PQRYEKLYSGHKRYKKDGLTSL 153
YE + + +YK G T L
Sbjct: 64 KGGYETATTLYNKYKSQGFTVL 85
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 25.6 bits (57), Expect = 7.2
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 132 PQRYEKLYSGHKRYKKDGLTSL 153
+ Y +L H R GL L
Sbjct: 47 DKNYRQLQEMHTRLVGKGLRIL 68
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane,
oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB:
3cyn_A
Length = 180
Score = 25.7 bits (57), Expect = 8.3
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 132 PQRYEKLYSGHKRYKKDGLTSL 153
+ Y L HK + + L
Sbjct: 54 DRNYLGLKELHKEFGPSHFSVL 75
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX,
phospholipid hydroperoxidase, struc genomics, structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 181
Score = 25.3 bits (56), Expect = 8.8
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 132 PQRYEKLYSGHKRYKKDGLTSL 153
Q Y L + L
Sbjct: 65 DQHYRALQQLQRDLGPHHFNVL 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.442
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,879,194
Number of extensions: 165740
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 21
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)