RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6976
         (177 letters)



>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score =  200 bits (510), Expect = 6e-66
 Identities = 80/175 (45%), Positives = 112/175 (64%), Gaps = 3/175 (1%)

Query: 3   PFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRL 62
            FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + L
Sbjct: 94  MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 153

Query: 63  PYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSM 122
           PY   FGGV AL+K+ F  +NGF N YWG GGEDDD+ NR+   G+ + R    I K  M
Sbjct: 154 PYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRM 213

Query: 123 LRH---RKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 174
           +RH   +K + NPQR++++    +    DGL SL Y V++ +++ L+T   V +G
Sbjct: 214 IRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 268


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 17/115 (14%), Positives = 42/115 (36%)

Query: 40  NLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDM 99
           N    P   R M          +   ++ GG+ ++++++FQ +  +      WGGE+ ++
Sbjct: 170 NFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEI 229

Query: 100 SNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLK 154
           S R+   G  +         +   +           + +   ++R  +  +   K
Sbjct: 230 SFRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFK 284


>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus,
          subsp. Thermophilus [TaxId: 271]}
          Length = 387

 Score = 28.8 bits (64), Expect = 0.31
 Identities = 9/33 (27%), Positives = 10/33 (30%)

Query: 6  RASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 38
          R  L  V     +          HD DLIP   
Sbjct: 30 RERLDPVYVVHKLAELGAYGVNLHDEDLIPRGT 62


>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
          missouriensis [TaxId: 1866]}
          Length = 392

 Score = 28.4 bits (63), Expect = 0.53
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 6  RASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 38
          R +L  V     +         FHD DL+P   
Sbjct: 29 RTALDPVEAVHKLAEIGAYGITFHDDDLVPFGS 61


>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
          b3728 [TaxId: 1663]}
          Length = 393

 Score = 27.3 bits (60), Expect = 1.00
 Identities = 8/16 (50%), Positives = 8/16 (50%)

Query: 23 FDCFIFHDVDLIPEDD 38
               FHD DLIP D 
Sbjct: 46 AYGITFHDNDLIPFDA 61


>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
          olivochromogenes [TaxId: 1963]}
          Length = 386

 Score = 27.2 bits (60), Expect = 1.2
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 3  PF---NRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 38
          PF    R +L  V   + +         FHD DLIP   
Sbjct: 24 PFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIPFGS 62


>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio fructosovorans [TaxId: 878]}
          Length = 261

 Score = 24.5 bits (53), Expect = 7.9
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 8/47 (17%)

Query: 32  DLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEH 78
           + +     N+  CP  P +   AV  +        L  G+  L++  
Sbjct: 132 EALGVKTINIPGCPPNPINFVGAVVHV--------LTKGIPDLDENG 170


>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 149

 Score = 24.0 bits (52), Expect = 8.5
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 115 PDIAKYSMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVID 159
           PD++  ++L    ++ +P  YE+ YSG K + +  L   + ++  
Sbjct: 2   PDVS--AVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQ 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 716,464
Number of extensions: 32495
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 15
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)