BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6977
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/255 (50%), Positives = 167/255 (65%), Gaps = 20/255 (7%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
G VG+D Y+ ILE +A+ G+ V+YQ T PTGTCAVL+T G RSL ANLAAAN F
Sbjct: 103 FGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVLVT--GTQRSLCANLAAANDF 160
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCT---IRNI-------- 109
TP+HL N +Q A+++YVSGFF TVS ES L VAK A + + N+
Sbjct: 161 TPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQF 220
Query: 110 --NYLHHRFIYLVLI---DFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIIT 164
N L F Y+ ++ + EA+A AK+ N+ TEDL I +I+ LPK+N R+RI IIT
Sbjct: 221 YKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIIT 280
Query: 165 QGDKPIILSQNG--KTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECG 222
QG P++L + G EFPVQ+L E +VDTNGAGD+FVGGFL+QL++ + VCI+CG
Sbjct: 281 QGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFVGGFLAQLLQSRTVDVCIKCG 340
Query: 223 VWAAQHIIQVSGCTL 237
+WAA+ IIQ SGCT
Sbjct: 341 IWAAREIIQRSGCTF 355
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 147/254 (57%), Gaps = 19/254 (7%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
G +G D + +IL+ KA+E + Y + +PTGTCA IT G RSL+ANLAAAN +
Sbjct: 87 FGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACIT--GDNRSLIANLAAANCY 144
Query: 61 TPD-HLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVA----------LSCTIRNI 109
+ HL + +N L++ A Y++GFFLTVSPES+L+VA A LS +
Sbjct: 145 KKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQ 204
Query: 110 NYLHHRFIYLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITII 163
Y + +D EA FA++Q F+T+D+ IA K LPK N R+RI I
Sbjct: 205 FYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIF 264
Query: 164 TQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGV 223
TQG I++ + T F V + ++DTNGAGD+FVGGFLSQL+ +PL+ CI G
Sbjct: 265 TQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGFLSQLVSDKPLTECIRAGH 324
Query: 224 WAAQHIIQVSGCTL 237
+AA II+ +GCT
Sbjct: 325 YAASIIIRRTGCTF 338
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 122/254 (48%), Gaps = 20/254 (7%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+G + D Y +L+ A G+V+ +H +G CAV IT GK R+LVA+L AAN
Sbjct: 89 VGCIADDRYGKVLKEAAEHEGIVMAVEHTTKAGSGACAVCIT--GKERTLVADLGAANHL 146
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYLHHRFIY-- 118
+ +H+ P + + + +Y SGF LTV +L+ + A + L FI
Sbjct: 147 SSEHMRSPAVVRAMDESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMINLSAPFIMQF 206
Query: 119 --------------LVLIDFEALAFAKQQNFQTEDLHAIALK-ISNLPKQNPNRERITII 163
+V EA FA + T+ + IA + +S +P + R+ +
Sbjct: 207 FSAQLGEVLPYTDIIVANRHEAKEFANMMKWDTDCVEEIARRAVSEVPYTG-TKGRVVVF 265
Query: 164 TQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGV 223
T+ + +L+ PV +L + V+D NGAGD+F+GGFLS G+ L C E G
Sbjct: 266 TRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAVGKDLRRCCETGH 325
Query: 224 WAAQHIIQVSGCTL 237
+ AQ +IQ GC+
Sbjct: 326 YTAQEVIQRDGCSF 339
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 134/259 (51%), Gaps = 24/259 (9%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEP--TGTCAVLITDNGKARSLVANLAAAN 58
+G +G D +++ S LV ++Q + EP TG AVL+++ K RS+V L AA
Sbjct: 106 VGCIGADIQGKYIKNDCSALDLVTEFQIAE-EPLMTGKVAVLVSE--KLRSMVTYLGAAC 162
Query: 59 LFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALS-------------CT 105
+ H+ P L++ A+ YY++GF + E +L++AK +L +
Sbjct: 163 DLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLS 222
Query: 106 IRNINYLHHRFIYLVLI---DFEALAFAKQQNFQTEDLHAIALKISNLP-KQNPNRERIT 161
N + Y ++ + EA A+ + + +HA A I++LP R+R+
Sbjct: 223 QFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLV 282
Query: 162 IITQGDKPIIL--SQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCI 219
IIT+G P++ S + + +F V++ + ++DTNGAGD+F GF++ I+G+P+ +
Sbjct: 283 IITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSL 342
Query: 220 ECGVWAAQHIIQVSGCTLG 238
V AA +II SG +LG
Sbjct: 343 HAAVKAAAYIICRSGFSLG 361
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 134/259 (51%), Gaps = 24/259 (9%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEP--TGTCAVLITDNGKARSLVANLAAAN 58
+G +G D +++ S LV ++Q + EP TG AVL+++ K RS+V L AA
Sbjct: 106 VGCIGADIQGKYIKNDCSALDLVTEFQIAE-EPLMTGKVAVLVSE--KLRSMVTYLGAAC 162
Query: 59 LFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALS-------------CT 105
+ H+ P L++ A+ YY++GF + E +L++AK +L +
Sbjct: 163 DLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLS 222
Query: 106 IRNINYLHHRFIYLVLI---DFEALAFAKQQNFQTEDLHAIALKISNLP-KQNPNRERIT 161
N + Y ++ + EA A+ + + +HA A I++LP R+R+
Sbjct: 223 QFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLV 282
Query: 162 IITQGDKPIIL--SQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCI 219
IIT+G P++ S + + +F V++ + ++DTNGAGD+F GF++ I+G+P+ +
Sbjct: 283 IITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSL 342
Query: 220 ECGVWAAQHIIQVSGCTLG 238
V AA +II SG +LG
Sbjct: 343 HAAVKAAAYIICRSGFSLG 361
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 134/259 (51%), Gaps = 24/259 (9%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEP--TGTCAVLITDNGKARSLVANLAAAN 58
+G +G D +++ S LV ++Q + EP TG AVL+++ K RS+V L AA
Sbjct: 104 VGCIGADIQGKYIKNDCSALDLVTEFQIAE-EPLMTGKVAVLVSE--KLRSMVTYLGAAC 160
Query: 59 LFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALS-------------CT 105
+ H+ P L++ A+ YY++GF + E +L++AK +L +
Sbjct: 161 DLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLS 220
Query: 106 IRNINYLHHRFIYLVLI---DFEALAFAKQQNFQTEDLHAIALKISNLP-KQNPNRERIT 161
N + Y ++ + EA A+ + + +HA A I++LP R+R+
Sbjct: 221 QFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLV 280
Query: 162 IITQGDKPIIL--SQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCI 219
IIT+G P++ S + + +F V++ + ++DTNGAGD+F GF++ I+G+P+ +
Sbjct: 281 IITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGKPMITSL 340
Query: 220 ECGVWAAQHIIQVSGCTLG 238
V AA +II SG +LG
Sbjct: 341 HAAVKAAAYIICRSGFSLG 359
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 125/274 (45%), Gaps = 45/274 (16%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
MGA+G D +L+ + GL ++ + TGTCAVLI N K R+L +L A F
Sbjct: 91 MGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLI--NEKERTLCTHLGACGSF 148
Query: 61 TPDHLHVPEN-NKLIQNAEYYYVSGFFLTVSPESILEVA--------------------- 98
+PEN A +Y + + LT +P++ LEVA
Sbjct: 149 -----RIPENWTTFASGALIFYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCV 203
Query: 99 ---KVALSCTIRNINYL---HHRFIYLV----LIDFEALAFAKQQNFQTEDLHAIALKIS 148
K A+ + + N L F +L L+ E +A + ++ AL++
Sbjct: 204 ELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKVALSVANKEHAVEVCTGALRLL 263
Query: 149 NLPKQNPNRERITIITQGDKPIILSQ-----NGKTTEFPVQRLPAESVVDTNGAGDSFVG 203
QN ++ ++T+G P+I ++ E V + AE +VDTNGAGD+FVG
Sbjct: 264 T-AGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVG 322
Query: 204 GFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCTL 237
GFL L +G+ + CI CG AQ +IQ G +L
Sbjct: 323 GFLYGLSQGKTVKQCIMCGNACAQDVIQHVGFSL 356
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 126/280 (45%), Gaps = 57/280 (20%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
MGA+G D +L+ + GL ++ + TGTCAVLI N K R+L +L A F
Sbjct: 91 MGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLI--NEKERTLCTHLGACGSF 148
Query: 61 TPDHLHVPEN-NKLIQNAEYYYVSGFFLTVSPESILEVAKVA--LSCTIRNINY------ 111
+PE+ A +Y + + LT +P++ LEVA A + I +N
Sbjct: 149 -----RIPEDWTTFASGALIFYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCV 203
Query: 112 -----------LHHRFIY--------------LVLIDFEALAFAKQQNFQTEDLHAIALK 146
LH ++ LV D AL+ A ++ HA+ +
Sbjct: 204 ELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAADKTALSTANKE-------HAVEVC 256
Query: 147 ISNL----PKQNPNRERITIITQGDKPIILSQ-----NGKTTEFPVQRLPAESVVDTNGA 197
L QN ++ ++T+G P+I ++ E V + AE +VDTNGA
Sbjct: 257 TGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGA 316
Query: 198 GDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCTL 237
GD+FVGGFL L +G+ + CI CG AQ +IQ G +L
Sbjct: 317 GDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVGFSL 356
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 124/274 (45%), Gaps = 45/274 (16%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
MGA+G D +L+ + GL ++ + TG CAVLI N K R+L +L A F
Sbjct: 111 MGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLI--NEKERTLCTHLGACGSF 168
Query: 61 TPDHLHVPEN-NKLIQNAEYYYVSGFFLTVSPESILEVA--------------------- 98
+PE+ A +Y + + LT +P++ LEVA
Sbjct: 169 -----RLPEDWTTFASGALIFYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCV 223
Query: 99 ---KVALSCTIRNINYL---HHRFIYLV----LIDFEALAFAKQQNFQTEDLHAIALKIS 148
K A+ + + N L F +L L+ E A + ++ AL++
Sbjct: 224 ELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLL 283
Query: 149 NLPKQNPNRERITIITQGDKPIILSQ-----NGKTTEFPVQRLPAESVVDTNGAGDSFVG 203
QN + ++ ++T+G P+I ++ E V + AE +VDTNGAGD+FVG
Sbjct: 284 T-AGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVG 342
Query: 204 GFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCTL 237
GFL L +G+ + CI CG AQ +IQ G +L
Sbjct: 343 GFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSL 376
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 45/274 (16%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
MGA+G D +L+ + GL ++ + TG CAVLI N K R+L +L A F
Sbjct: 91 MGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLI--NEKERTLCTHLGACGSF 148
Query: 61 TPDHLHVPEN-NKLIQNAEYYYVSGFFLTVSPESILEVA--------------------- 98
+PE+ A +Y + + LT +P++ EVA
Sbjct: 149 -----RLPEDWTTFASGALIFYATAYTLTATPKNAFEVAGYAHGIPNAIFTLNLSAPFCV 203
Query: 99 ---KVALSCTIRNINYL---HHRFIYLV----LIDFEALAFAKQQNFQTEDLHAIALKIS 148
K A+ + + N L F +L L+ E A + ++ AL++
Sbjct: 204 ELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLL 263
Query: 149 NLPKQNPNRERITIITQGDKPIILSQ-----NGKTTEFPVQRLPAESVVDTNGAGDSFVG 203
QN ++ ++T+G P+I ++ E V + AE +VDTNGAGD+FVG
Sbjct: 264 T-AGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVG 322
Query: 204 GFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCTL 237
GFL L +G+ + CI CG AQ +IQ G +L
Sbjct: 323 GFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSL 356
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 158 ERIT--IITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
ER+ I+T+G K ++ K E P + A V+D GAGDS+ GFLS +KG L
Sbjct: 206 ERVDALIVTKGSKGSVIYTKDKKIEIPC--IKAGKVIDPTGAGDSYRAGFLSAYVKGYDL 263
Query: 216 SVCIECGVWAAQHIIQVSGCTLGL 239
C G A +++ GC L
Sbjct: 264 EKCGLIGAATASFVVEAKGCQTNL 287
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 40/255 (15%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGT------CAVLITDNGKARSLVANL 54
G V D DI G+ H+ T+P G + +T++G+ RS L
Sbjct: 100 FGNVAADQLGDIFTHDIRAQGV-----HYQTKPKGAFPPTARSXIFVTEDGE-RSXNTYL 153
Query: 55 AAANLFTPDHLHVPENNKLIQNAEYYYVSGFFLT--VSPESILEVAKVA------LSCTI 106
A P+ + ++ +A+ Y G+ + E+IL+ A++A S T+
Sbjct: 154 GACVELGPEDVEA----DVVADAKVTYFEGYLWDPPRAKEAILDCARIAHQHGREXSXTL 209
Query: 107 RN---INYLHHRFIYLVLIDFEALAFAKQQN----FQTEDLHAIALKISNLPKQNPNRER 159
+ ++ F+ L + FA +Q +QT+D +I+ K
Sbjct: 210 SDSFCVDRYRGEFLDLXRSGKVDIVFANRQEALSLYQTDDFEEALNRIAADCK------- 262
Query: 160 ITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCI 219
I +T + ++ + + V + VVDT GAGD F GFL +G L C
Sbjct: 263 IAAVTXSENGAVILKG--RERYYVNAIRIREVVDTTGAGDLFASGFLYGYTQGRSLEDCG 320
Query: 220 ECGVWAAQHIIQVSG 234
+ G AA +IQ G
Sbjct: 321 KLGCLAAGIVIQQIG 335
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 74 IQNAEYYYVSGFFLTV-SPESILEVAKVALSCTIRNINYL-HHRFIYLVLIDFEALAFAK 131
+ N +Y Y+SG L + SP S ++ + C + + + + + E
Sbjct: 127 LANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVY 186
Query: 132 QQNFQTEDLHAIALKISN-LPKQNPNRERIT----------IITQGDKPIILSQNGKT-T 179
QQ + D+ + L + L Q P + I ++ +G ++S G+
Sbjct: 187 QQXLECTDIAFLTLDDEDALWGQQPVEDVIARTHNAGVKEVVVKRGADSCLVSIAGEALV 246
Query: 180 EFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCTL 237
+ P +LP E V+DT AGDSF G+L+ + G + G A +IQ G +
Sbjct: 247 DVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAENAAKRGHLTASTVIQYRGAII 304
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 175 NGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSG 234
+G+ V P VVDT GAGD F G +S L+ G + ++ G W +QV G
Sbjct: 261 DGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGLGVPEAVKRGAWIGARAVQVLG 320
Query: 235 CTLGL 239
+ GL
Sbjct: 321 DSEGL 325
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 31/214 (14%)
Query: 33 PTGTCAVLITDNGKARSLVANLAAANLFTPDHLHVPENNKLIQNAEYYYVSGFFLT--VS 90
PT + +T++G+ RS L A P+ + + ++ ++ Y G+ +
Sbjct: 113 PTARSXIFVTEDGE-RSXNTYLGACVELGPEDVE----DDVVAQSKVTYFEGYLWDPPRA 167
Query: 91 PESILEVAKVA------LSCTIRNINYLHH---RFIYLVLIDFEALAFAKQQN----FQT 137
++I E A++A + T+ + +H F+ L + FA +Q ++T
Sbjct: 168 KDAIREAARIAHAHGRETAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEALALYET 227
Query: 138 EDL-HAIALKISNLPKQNPNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNG 196
ED A+ L + ++ +T ++ ++ + + L E VVDT G
Sbjct: 228 EDFDRALELLARDC--------KLAAVTLSEEGSVVVRGAERVRVGASVL--EQVVDTTG 277
Query: 197 AGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHII 230
AGD + GFL G L C + G AA +I
Sbjct: 278 AGDLYAAGFLFGYTSGRSLEECSKLGNLAAGIVI 311
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 161 TIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIE 220
TI+T G++ L +GK +FP +P+ DT GAGDSF G L +
Sbjct: 212 TIVTNGERGSSLFXDGKKYDFPA--IPSSG--DTVGAGDSFRAGLYLALYNRRSIEKGXI 267
Query: 221 CGVWAAQHIIQ 231
G A H+I
Sbjct: 268 YGTIIAHHVID 278
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 4 VGKDNY-SDILES-KASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF- 60
VGKD++ +D +E+ K ++ YQ D TGT ++++ + G+ +++ +A ANL
Sbjct: 84 VGKDSFGNDYIENLKQNDISTEFTYQTKDAA-TGTASIIVNNEGQ--NIIVIVAGANLLL 140
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRN-------INYLH 113
+ L N +I A+ L ++P + LE +A ++ I L
Sbjct: 141 NTEDLRAAAN--VISRAKVMVCQ---LEITPATSLEALTMARRSGVKTLFNPAPAIADLD 195
Query: 114 HRFIYLVLI----DFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQG-DK 168
+F L + + EA D AL + Q + IIT G +
Sbjct: 196 PQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQ------VVIITLGAEG 249
Query: 169 PIILSQNGKTTEFPVQRLPAESV--VDTNGAGDSFVGGF 205
++LSQ TE + +P E V VDT GAGDSFVG
Sbjct: 250 CVVLSQ----TEPEPKHIPTEKVKAVDTTGAGDSFVGAL 284
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 161 TIITQG-DKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIK 211
TII+ G D ++++ G+ FP R+ VVDT GAGD+FVGG L L +
Sbjct: 237 TIISLGADGALLITAEGEF-HFPAPRV---DVVDTTGAGDAFVGGLLFTLSR 284
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 161 TIITQG-DKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIK 211
TII+ G D ++++ G+ FP R+ VVDT GAGD+FVGG L L +
Sbjct: 237 TIISLGADGALLITAEGEF-HFPAPRV---DVVDTTGAGDAFVGGLLFTLSR 284
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 30/232 (12%)
Query: 4 VGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFTP- 62
+G D+YSD+L + G+ + + PTG + + G+ R ++ A A L
Sbjct: 75 IGNDDYSDLLIENYEKLGITGYIRV--SLPTGRAFIEVDKTGQNRIIIFPGANAELKKEL 132
Query: 63 -DHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTI------RNINYLHHR 115
D + E++ L+ E + E+ LE AK I + IN +
Sbjct: 133 IDWNTLSESDILLLQNEIPF----------ETTLECAKRFNGIVIFDPAPAQGINEEIFQ 182
Query: 116 FI-YLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQ 174
++ YL + E A +K + + A K L +N I+ GDK ++L
Sbjct: 183 YLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKN------VIVKLGDKGVLLVN 236
Query: 175 NGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAA 226
+ FP ++ A VDT AGD F G F L +G+ + G AA
Sbjct: 237 KNEKKHFPTFKVKA---VDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAA 285
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 43/257 (16%)
Query: 1 MGAVGKDNYSDILESKASEFG-----LVVKYQHHDTEPTGTCAVLITDNGKARSLVANLA 55
+G + D + +ES G LVV + H TG I + L
Sbjct: 64 IGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGH---KTGLAFTEIKSPEECSILXYRQD 120
Query: 56 AANLF-TPDHLHVPENNKLIQNAEYYYVSGFFLTVSP--ESILEVAKVALSCTIRNINYL 112
A+L+ +P+ + N I+ ++ VSG L+ SP E++L+ ++A ++ + L
Sbjct: 121 VADLYLSPEEV----NEAYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFEL 176
Query: 113 HHR-----------FIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERIT 161
+R Y ++ + + ++ F + N ++ N E I
Sbjct: 177 DYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDV---------LENRTEKGDNDETIR 227
Query: 162 IITQGDKPIILSQNGKTTEFPVQRLP--------AESVVDTNGAGDSFVGGFLSQLIKGE 213
+ + +I+ ++G F + V+ T GAGDS+ FL LI G+
Sbjct: 228 YLFKHSPELIVIKHGVEGSFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASAFLYALISGK 287
Query: 214 PLSVCIECGVWAAQHII 230
+ ++ G +A ++
Sbjct: 288 GIETALKYGSASASIVV 304
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 159 RITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
R +IT G + + S NG+ P R+ A VDT AGD+F G ++ L++ +PL
Sbjct: 218 RTVLITLGSRGVWASVNGEGQRVPGFRVQA---VDTIAAGDTFNGALITALLEEKPL 271
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 159 RITIITQGDKPIILSQNGKTTEFPVQRLPA--ESVVDTNGAGDSFVGGFLSQLIKGEPLS 216
+ I+T G++ +I S + + R+PA E VD GAGD+F GF+ L+ G +
Sbjct: 238 KAVILTLGEEGVIASDGEE-----IIRIPAFSEDAVDVTGAGDAFWSGFICGLLDGYTVK 292
Query: 217 VCIECGVWAAQHIIQVSGC 235
I+ G A I+ G
Sbjct: 293 RSIKLGNGVAAFKIRGVGA 311
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 159 RITIITQGDK-PIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIK 211
+ II +G+ ++ + NG F P ES+ D GAGD+F GGF+ L +
Sbjct: 201 KTLIIKKGEHGALLFTDNGI---FAAPAFPLESIYDPTGAGDTFAGGFIGHLAR 251
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 156 NRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFL 206
+R + IIT+G+ + T + P R AE V+D G GD+F GG L
Sbjct: 212 SRVQALIITRGEHGATIRHRDGTEQIPAVR--AERVIDPTGCGDAFRGGLL 260
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 156 NRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKG 212
+R + IIT+G+ + T + P R AE V+D G GD+F GG L + G
Sbjct: 220 SRVQALIITRGEHGATIRHRDGTEQIPAVR--AERVIDPTGCGDAFRGGLLYGIEHG 274
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 159 RITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVC 218
+ +I G + + T + P + + +DT GAGD+F GF++ L++G+ L C
Sbjct: 224 KTVVIKTGKDGCFIKRGDXTXKVPA--VAGITAIDTIGAGDNFASGFIAALLEGKNLREC 281
Query: 219 IECGVWAAQHIIQVSGCTLGL 239
A + G T G+
Sbjct: 282 ARFANATAAISVLSVGATTGV 302
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 192 VDTNGAGDSFVGGFLSQLIKGEP-LSVCIECGVWAAQHIIQVSGC 235
+DT AGD+F+G F+S+L K + L+ I+ G A+ +Q G
Sbjct: 247 IDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGA 291
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 185 RLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSG 234
++P E D GAGD+ G F+S ++G+ + + G+ A+ +I V G
Sbjct: 247 KVPVE---DPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRG 293
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 159 RITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVC 218
I ++ G K I+ +GK ++P E D GAGD+ G FLS KG +
Sbjct: 219 EIIVMKLGPKGAIVYYDGKKYYSSGYQVPVE---DVTGAGDALGGTFLSLYYKGFEMEKA 275
Query: 219 IECGVWAAQHIIQVSG 234
++ + A+ + + G
Sbjct: 276 LDYAIVASTLNVMIRG 291
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 158 ERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSV 217
E I + GD + S G F V +P+ V ++ GAGDS V GFL+ L +G+ L
Sbjct: 212 ESILVSFAGDGALFASAEGX---FHVN-VPSGEVRNSVGAGDSVVAGFLAALQEGKSLED 267
Query: 218 CIECGVWAA 226
+ V A
Sbjct: 268 AVPFAVAAG 276
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKYQHHDTEPTG--TCAVLITD 43
G+V + YS+I+ S S++G+V++ + D +PTG T V I D
Sbjct: 265 GSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTIQD 308
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 184 QRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSG 234
Q P V DT GAGDSF F + ++ G+ + + V + ++ SG
Sbjct: 232 QETPKVPVADTVGAGDSFTAAFCASILNGKSVPEAHKLAVEVSAYVCTQSG 282
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 156 NRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFL 206
R ++ ++T P+ E P R+ V D+N AGD+FVGG L
Sbjct: 222 GRAQLLLVTDAAGPVHWYTRTAGGEVPTFRV---QVQDSNAAGDAFVGGXL 269
>pdb|2QOM|A Chain A, The Crystal Structure Of The E.Coli Espp Autotransporter
Beta-Domain.
pdb|2QOM|B Chain B, The Crystal Structure Of The E.Coli Espp Autotransporter
Beta-Domain
Length = 285
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 3 AVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFTP 62
+VG Y+ + + L+ KY HHD E T T A L T + S A A +
Sbjct: 79 SVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRY-- 136
Query: 63 DHLHVPENNKLIQNAEYYYVS 83
HV E+ + AE Y S
Sbjct: 137 ---HVTEDAWIEPQAELVYGS 154
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 30/176 (17%)
Query: 27 QHHDTEPTGTCAVLITDNGKARSLVANLAAANLFTPDHLHVPENNKLIQNAEYYYVSGFF 86
QH DT ++++ +++ AAA+ F+ D +P + + G F
Sbjct: 90 QHSDT------SIILNSADGDNAIITTTAAADTFSLDE-XIPHXADAVA-GDILLQQGNF 141
Query: 87 LTVSPESILEVAKVALSCTIRNINYLHHRFIYLV-LIDFEALAFAKQQNFQTEDLHAIAL 145
++ + A+ T+ N + ++ F +L LID + ++ + Q
Sbjct: 142 SLDKTRALFQYARSRGXTTVFNPSPVNPDFCHLWPLIDIAVVNESEAELLQ--------- 192
Query: 146 KISNLPKQNPNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSF 201
P + +ITQG L Q G+ P +PAE++ DT GAGD+F
Sbjct: 193 ---------PYGVKTLVITQGAAGAWLVQEGQRQFCPA--VPAEAL-DTTGAGDTF 236
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITD 43
G+V Y DI + +++G+VV+ + DT T T V ITD
Sbjct: 243 TGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITD 285
>pdb|3SLT|A Chain A, Pre-Cleavage Structure Of The Autotransporter Espp -
N1023s Mutant
Length = 313
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 3 AVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFTP 62
+VG Y+ + + L+ KY HHD E T T A L T + S A A +
Sbjct: 115 SVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRY-- 172
Query: 63 DHLHVPENNKLIQNAEYYYVS 83
HV E+ + AE Y S
Sbjct: 173 ---HVTEDAWIEPQAELVYGS 190
>pdb|3SLO|A Chain A, Pre-Cleavage Structure Of The Autotransporter Espp -
N1023d Mutant
Length = 313
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 3 AVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFTP 62
+VG Y+ + + L+ KY HHD E T T A L T + S A A +
Sbjct: 115 SVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRY-- 172
Query: 63 DHLHVPENNKLIQNAEYYYVS 83
HV E+ + AE Y S
Sbjct: 173 ---HVTEDAWIEPQAELVYGS 190
>pdb|3SLJ|A Chain A, Pre-Cleavage Structure Of The Autotransporter Espp -
N1023a Mutant
Length = 313
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 3 AVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFTP 62
+VG Y+ + + L+ KY HHD E T T A L T + S A A +
Sbjct: 115 SVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRY-- 172
Query: 63 DHLHVPENNKLIQNAEYYYVS 83
HV E+ + AE Y S
Sbjct: 173 ---HVTEDAWIEPQAELVYGS 190
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 193 DTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSGC 235
DT AGDSF G L ++ G+PL I A ++Q G
Sbjct: 273 DTTAAGDSFNAGLLDSVLAGQPLETAIAAAAALAGQVVQGKGA 315
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 160 ITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCI 219
+ + T G K + L + TT V +P S D G GD+F GFL+ G L
Sbjct: 229 LRVTTLGPKGVDLVEPDGTT-IHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSA 287
Query: 220 ECGVWAAQHIIQVSG 234
+ G A +++ +G
Sbjct: 288 QLGSLVAVLVLESTG 302
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 151 PKQNPNRERITIITQGDKPIILSQNGK-------TTEFPVQRLPAESVVDTNGAGDSFVG 203
P P R + +G K +I+ + + +F V+ P E V D GAGD F G
Sbjct: 206 PHSTPERAIAGFLEEGVKEVIVKRGNQGASYYSANEQFHVESYPVEEV-DPTGAGDCFGG 264
Query: 204 GFLS 207
+++
Sbjct: 265 AWIA 268
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 54/242 (22%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHH----------DTEPTGTCAVLITDNGKARSL 50
+G VG+D ++E + G+ + + + P G V G A S
Sbjct: 53 VGRVGEDELGAMVEERLRAEGVDLTHFRRAPGFTGLYLREYLPLGQGRVFYYRKGSAGSA 112
Query: 51 VANLAAANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPES------ILEVAKVALSC 104
+A A F PD+L + + ++SG +SPE+ +E AK
Sbjct: 113 LAPGA----FDPDYL---------EGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVR 159
Query: 105 TIRNINYLH--------HRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPN 156
++NY F+ L + L ++++ AL+ + P+
Sbjct: 160 VSLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFGRVEEALRALSAPE---- 215
Query: 157 RERITIITQGDKPIILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGE 213
++ +G K +G+ E F V+ VD GAGD+F G+L+ + G
Sbjct: 216 ----VVLKRGAKGAWAFVDGRRVEGSAFAVE------AVDPVGAGDAFAAGYLAGAVWGL 265
Query: 214 PL 215
P+
Sbjct: 266 PV 267
>pdb|3HO6|A Chain A, Structure-Function Analysis Of Inositol Hexakisphosphate-
Induced Autoprocessing In Clostridium Difficile Toxin A
pdb|3HO6|B Chain B, Structure-Function Analysis Of Inositol Hexakisphosphate-
Induced Autoprocessing In Clostridium Difficile Toxin A
Length = 267
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 55 AAANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYLHH 114
A NLF+ + P+N+ +IQ +FL+ ESILE+ K + ++N +
Sbjct: 53 ATCNLFSKN----PKNSIIIQRNMNESAKSYFLSDDGESILELNKYRIPERLKNKEKVKV 108
Query: 115 RFIYLVLIDFEALAFAK 131
FI +F FA+
Sbjct: 109 TFIGHGKDEFNTSEFAR 125
>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3RRV|B Chain B, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3RRV|C Chain C, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3RRV|D Chain D, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3RRV|E Chain E, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
pdb|3RRV|F Chain F, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Paratuberculosis
Length = 276
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 92 ESILEVAKVALSCTIRNINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISN 149
+ ILE+ + A+ T R +N +H L +D+ AL+ A+ Q+F TED +I K+++
Sbjct: 220 KKILELPQQAVESTKRVLN-IHLERAVLASLDY-ALS-AESQSFVTEDFRSIVTKLAD 274
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 26 YQHHDTEPTGTCAVLITDNGKARSLVANLA----AANLFTPDHLHVPENNK 72
Y+ D E G C +++T + KA SL+ N A A + D +H+ ++ K
Sbjct: 105 YESRD-EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 162 IITQGDKPIILSQNGKTTE-FPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLS 216
+++ G K I + NGK + P P + GAGD FVG F++ L P++
Sbjct: 219 VVSLGAKGSICAHNGKLYQVIP----PKVQERNDTGAGDVFVGAFIAGLAXNXPIT 270
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 162 IITQGDKPIILSQNGKTTE-FPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIE 220
+++ G K I + NGK + P P + GAGD FVG F++ L P++ ++
Sbjct: 219 VVSLGAKGSICAHNGKLYQVIP----PKVQERNDTGAGDVFVGAFIAGLAMNMPITETLK 274
Query: 221 CGVW-AAQHIIQVSGCTLGL 239
+A ++Q + L
Sbjct: 275 VATGCSASAVMQQDSSSFDL 294
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGT 36
G+V YS I S +++G+V++ + + PTGT
Sbjct: 239 TGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGT 274
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 191 VVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCT 236
V D GAGD+ G+L+ + +G+ + + G AA +Q S T
Sbjct: 247 VKDVTGAGDAMASGYLAAIAEGKTIREALRQGAAAAAITVQSSFAT 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,303,771
Number of Sequences: 62578
Number of extensions: 286146
Number of successful extensions: 844
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 67
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)