RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6977
(239 letters)
>gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase.
Length = 332
Score = 269 bits (689), Expect = 3e-90
Identities = 120/255 (47%), Positives = 163/255 (63%), Gaps = 20/255 (7%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
MG +GKD + + ++ A+ G+ V Y ++ PTGTCAVL+ G RSLVANL+AAN +
Sbjct: 75 MGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLV--VGGERSLVANLSAANCY 132
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVAL-SCTIRNINYLHHRFI-- 117
+HL PEN L++ A++YY++GFFLTVSPESI+ VA+ A + +N L FI
Sbjct: 133 KVEHLKKPENWALVEKAKFYYIAGFFLTVSPESIMLVAEHAAANNKTFMMN-LSAPFICE 191
Query: 118 --------YLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITII 163
L +DF EA FAK Q ++TED+ IALKIS LPK + +R +I
Sbjct: 192 FFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVI 251
Query: 164 TQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGV 223
TQG P +++++GK EFPV LP E +VDTNGAGD+FVGGFLSQL++G+ + C+ G
Sbjct: 252 TQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGN 311
Query: 224 WAAQHIIQVSGCTLG 238
+AA IIQ SGCT
Sbjct: 312 YAANVIIQRSGCTYP 326
>gnl|CDD|240328 PTZ00247, PTZ00247, adenosine kinase; Provisional.
Length = 345
Score = 236 bits (605), Expect = 2e-77
Identities = 105/251 (41%), Positives = 150/251 (59%), Gaps = 18/251 (7%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFT 61
G VG D +++IL+ A + G+ + +++ PTGTCAVL+ GK RSLVANL AAN +
Sbjct: 87 GCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVC--GKERSLVANLGAANHLS 144
Query: 62 PDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVA-----LSCTIRNINYLHHRF 116
+H+ + I+ A+ YY+ GFFLTVSP ++L+VAK A L C + ++ F
Sbjct: 145 AEHMQSHAVQEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFF 204
Query: 117 ---IYLVL--IDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQ 165
+ VL +D EA FAK + TEDL IA +I+ LPK + R R+ + TQ
Sbjct: 205 FERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQ 264
Query: 166 GDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWA 225
G +P +++ T PV L E +VDTNGAGD+FVGGFL+Q G+ + C+E G ++
Sbjct: 265 GPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKDIDRCVEAGHYS 324
Query: 226 AQHIIQVSGCT 236
AQ IIQ +GCT
Sbjct: 325 AQVIIQHNGCT 335
>gnl|CDD|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the
phosphorylation of ribofuranosyl-containing nucleoside
analogues at the 5'-hydroxyl using ATP or GTP as the
phosphate donor.The physiological function of AK is
associated with the regulation of extracellular
adenosine levels and the preservation of intracellular
adenylate pools. Adenosine kinase is involved in the
purine salvage pathway. .
Length = 312
Score = 202 bits (516), Expect = 2e-64
Identities = 95/254 (37%), Positives = 132/254 (51%), Gaps = 32/254 (12%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+G VG D D L G+ +YQ PTGTCAVL+T + + R++ L AAN
Sbjct: 75 IGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAE-RTMCTYLGAANEL 133
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVA--------KVALSCTIRNINYL 112
+PD L + L+ A+Y Y+ G+ LTV PE+IL A K+AL+ + I
Sbjct: 134 SPDDL----DWSLLAKAKYLYLEGYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQR 189
Query: 113 HHRFIYLVL--IDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIIT 164
+ +L +D EA A A+ + T D ALK+ L R RI +IT
Sbjct: 190 FKEALLELLPYVDILFGNEEEAEALAEAE---TTDDLEAALKLLAL------RCRIVVIT 240
Query: 165 QGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVW 224
QG K ++ + G+ +PV +P E +VDTNGAGD+F GGFL L++GEPL CI G +
Sbjct: 241 QGAKGAVVVEGGE--VYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGSY 298
Query: 225 AAQHIIQVSGCTLG 238
AA +IQ G L
Sbjct: 299 AAAEVIQQLGPRLP 312
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase. This family
includes a variety of carbohydrate and pyrimidine
kinases.
Length = 298
Score = 141 bits (357), Expect = 8e-41
Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 29/254 (11%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTE-PTGTCAVLITDNGKARSLVANLAAANL 59
+G VG DN+ + L + G+ Y D + TG +L+ +G+ R++ AA
Sbjct: 56 IGKVGDDNFGEFLLELLKKEGVDTDYVVIDEDTRTGLALILVDGDGE-RTINFYRGAAAD 114
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVA-KVALSCTIRNINYL------ 112
TP+ L L++NA+ Y+SG PE+ LE + A + + N
Sbjct: 115 LTPEEL----PEDLLENADILYLSGSLPLPLPEATLEELIEAAKNGGTFDPNLRDPLWAD 170
Query: 113 ---HHRFIYLVLI----DFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQ 165
+ L I + E A ++ E+ A K + + ++T
Sbjct: 171 LEVLLELLPLADILKPNEEELEALTGEKINDIEEALAALHKHAK-------GVKTVVVTL 223
Query: 166 GDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWA 225
G +L E V +P VVDT GAGD+FV GFL+ L+ G+ L +
Sbjct: 224 GADGALLVDGDG--EVHVPPVPKVKVVDTTGAGDAFVAGFLAGLLAGKSLEEALRFANAV 281
Query: 226 AQHIIQVSGCTLGL 239
A ++Q +G L
Sbjct: 282 AALVVQKTGAISSL 295
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism].
Length = 311
Score = 107 bits (269), Expect = 6e-28
Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 30/255 (11%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTE-PTGTCAVLITDNGKARSLVANLAAANL 59
+GAVG D++ + L + + G+ + D TG +L+ ++G+ + AAA L
Sbjct: 57 IGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALL 116
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALS---------------C 104
TP+ L + + A+ ++SG L + PE++L ++A +
Sbjct: 117 LTPEDL----DEDELAGADVLHISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRPALW 172
Query: 105 TIRNINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIIT 164
+ L L + EA ED A A + + ++T
Sbjct: 173 DRELLEELLALADILFPNEEEAELLTGL----EEDAEAAAALLLAKG------VKTVVVT 222
Query: 165 QGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVW 224
G + ++ G PV VVDT GAGD+F GFL+ L++G+ L +
Sbjct: 223 LGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFANA 282
Query: 225 AAQHIIQVSGCTLGL 239
AA + G L
Sbjct: 283 AAALAVTRPGARPSL 297
>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates
2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the
glycolysis and therefore use polymers, like pectin and
xylan as carbon sources.
Length = 294
Score = 79.9 bits (198), Expect = 8e-18
Identities = 58/264 (21%), Positives = 100/264 (37%), Gaps = 48/264 (18%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLV---ANLAA 56
+ AVG D + + ++ G+ + + PTG + I G R ++ A +A
Sbjct: 51 VTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGG-ERRVLYYRAG-SA 108
Query: 57 ANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPE------SILEVAKVALSCTIRNIN 110
A+ TP+ L + + A++ ++SG L +S LE AK ++N
Sbjct: 109 ASRLTPEDL----DEAALAGADHLHLSGITLALSESAREALLEALEAAKARGVTVSFDLN 164
Query: 111 Y------------LHHRFIYLVLI------DFEALAFAKQQNFQTEDLHAIALKISNLPK 152
Y + V I + EAL + E A+AL +
Sbjct: 165 YRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAERALALALGV----- 219
Query: 153 QNPNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKG 212
+ ++ G + ++ G P + VVDT GAGD+F GFL+ L++G
Sbjct: 220 ------KAVVVKLGAEGALVYTGGGRVFVPAYPVE---VVDTTGAGDAFAAGFLAGLLEG 270
Query: 213 EPLSVCIECGVWAAQHIIQVSGCT 236
L + AA ++ G
Sbjct: 271 WDLEEALRFANAAAALVVTRPGDI 294
>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and
plants are enzymes with high specificity for fructose,
as are all FRKs, but they catalyzes the conversion of
fructose to fructose-6-phosphate, which is an entry
point into glycolysis via conversion into
glucose-6-phosphate. This is in contrast to FRKs [or
ketohexokinases (KHKs)] from mammalia and halophilic
archaebacteria, which phosphorylate fructose to
fructose-1-phosphate.
Length = 295
Score = 78.1 bits (193), Expect = 5e-17
Identities = 54/245 (22%), Positives = 86/245 (35%), Gaps = 45/245 (18%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKAR-SLVANLAAAN 58
+G VG D + D L E G+ + Q PT V + +G+ AA
Sbjct: 48 IGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADL 107
Query: 59 LFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP--ESILEVAKVALSCTIR---NINYLH 113
L + N L+ A+ + L P ++LE+ + A + + N
Sbjct: 108 LLDTEL-----NPDLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLR- 161
Query: 114 HRFIYLVLIDFEALAFAKQQN------------------FQTEDLHAIALKISNLPKQNP 155
L E A + F ED IA +
Sbjct: 162 -----PPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPEEIAALL-----LLF 211
Query: 156 NRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
+ + ++T+G +L G E P + VVDT GAGD+FV G L+QL+ L
Sbjct: 212 GLKLV-LVTRGADGALLYTKGGVGEVPGIPVE---VVDTTGAGDAFVAGLLAQLLSRGLL 267
Query: 216 SVCIE 220
++ +
Sbjct: 268 ALDED 272
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in
eukaryotes and bacteria, YeiC-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 288
Score = 69.3 bits (170), Expect = 6e-14
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 28/246 (11%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+ AVG D+ + + ++ + GL V+ + T + ++ +G +A++ L
Sbjct: 55 LSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELL 114
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAK--------VALSCT----IRN 108
TPD L + + ++ A+ V + E++ + VA T ++
Sbjct: 115 TPDFL--RKIREALKEAKPIVVDA---NLPEEALEYLLALAAKHGVPVAFEPTSAPKLKK 169
Query: 109 INYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDK 168
+ YL H L E A A ED A KI LP I+T G K
Sbjct: 170 LFYLLHAIDLLTPNRAELEALAGALIENNED-ENKAAKILLLPGIK-----NVIVTLGAK 223
Query: 169 PIILSQ---NGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWA 225
++LS +T FP + E+VV+ GAGD+FV G ++ L++G L + A
Sbjct: 224 GVLLSSREGGVETKLFPAPQ--PETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQAA 281
Query: 226 AQHIIQ 231
A ++
Sbjct: 282 AALTLE 287
>gnl|CDD|233751 TIGR02152, D_ribokin_bact, ribokinase. This model describes
ribokinase, an enzyme catalyzing the first step in
ribose catabolism. The rbsK gene encoding ribokinase
typically is found with ribose transport genes.
Ribokinase belongs to the carbohydrate kinase pfkB
family (pfam00294). In the wide gulf between the current
trusted (360 bit) and noise (100 bit) cutoffs are a
number of sequences, few of which are clustered with
predicted ribose transport genes but many of which are
currently annotated as if having ribokinase activity.
Most likely some have this function and others do not
[Energy metabolism, Sugars].
Length = 293
Score = 68.8 bits (169), Expect = 8e-14
Identities = 68/240 (28%), Positives = 98/240 (40%), Gaps = 33/240 (13%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAANL- 59
G VG D + D L G+ +Y PTGT + + D G+ R +V A AN
Sbjct: 52 GKVGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVV--AGANAE 109
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSC---TIRN----INYL 112
TP+ + E LI ++ + L + E++LE AK+A I N I L
Sbjct: 110 LTPEDIDAAEA--LIAESDIVLLQ---LEIPLETVLEAAKIAKKHGVKVILNPAPAIKDL 164
Query: 113 HHRFIYLVLI------DFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQG 166
+ LV I + E L + + ED A K+ +N IIT G
Sbjct: 165 DDELLSLVDIITPNETEAEILTGIEVTDE--EDAEKAAEKLLEKGVKN------VIITLG 216
Query: 167 DKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAA 226
K +L ++ P ++ A VDT AGD+F G F L +G+ L I AA
Sbjct: 217 SKGALLVSKDESKLIPAFKVKA---VDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAA 273
>gnl|CDD|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in
bacteria and archaea, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 279
Score = 67.7 bits (166), Expect = 2e-13
Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 38/248 (15%)
Query: 1 MGAVGKDNYSDILESKASEFGL---VVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAA 57
+ AVG+D + + + E G+ V+ D + TG A ++TD + A
Sbjct: 56 VAAVGEDFHGRLYLEELREEGVDTSHVRVV--DEDSTGV-AFILTDGDDNQIAYFYPGAM 112
Query: 58 NLFTP----------DHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIR 107
+ P D +H+ LI+ A G ++ P E+ +++
Sbjct: 113 DELEPNDEADPDGLADIVHLSSGPGLIELARELAAGGITVSFDPGQ--ELPRLSGEELEE 170
Query: 108 NINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGD 167
+ L + D+EA ++ +A + R+ ++T G
Sbjct: 171 ILERAD----ILFVNDYEAELLKERTG---LSEAELASGV-----------RVVVVTLGP 212
Query: 168 KPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQ 227
K I+ ++G+ E P +PA VVDT GAGD+F GFL L++G L + G AA
Sbjct: 213 KGAIVFEDGEEVEVPA--VPAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAAS 270
Query: 228 HIIQVSGC 235
++ G
Sbjct: 271 LKVERRGA 278
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of
ribose to ribose-5-phosphate using ATP. This reaction is
the first step in the ribose metabolism. It traps ribose
within the cell after uptake and also prepares the sugar
for use in the synthesis of nucleotides and histidine,
and for entry into the pentose phosphate pathway.
Ribokinase is dimeric in solution.
Length = 292
Score = 67.6 bits (166), Expect = 2e-13
Identities = 63/247 (25%), Positives = 92/247 (37%), Gaps = 32/247 (12%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
GAVG D + D L E G+ V Y + PTGT + + ++G+ R +V A L
Sbjct: 57 GAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELT 116
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLT---VSPESILEVAKVALSCTIRNI-N---YLH 113
D V +LI A+ L + E++L + A + I N
Sbjct: 117 PAD---VDAALELIAAAD------VLLLQLEIPLETVLAALRAARRAGVTVILNPAPARP 167
Query: 114 HRFIYLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGD 167
L L+D EA + ED A + +N I+T G
Sbjct: 168 LPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKN------VIVTLGA 221
Query: 168 KPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQ 227
K +L+ G+ P VDT GAGD+F+G + L +G L I AA
Sbjct: 222 KGALLASGGEVEHVPA---FKVKAVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAAA 278
Query: 228 HIIQVSG 234
+ G
Sbjct: 279 LSVTRPG 285
>gnl|CDD|238915 cd01940, Fructoselysine_kinase_like, Fructoselysine kinase-like.
Fructoselysine is a fructoseamine formed by glycation, a
non-enzymatic reaction of glucose with a primary amine
followed by an Amadori rearrangement, resulting in a
protein that is modified at the amino terminus and at
the lysine side chains. Fructoseamines are typically
metabolized by fructoseamine-3-kinase, especially in
higher eukaryotes. In E. coli, fructoselysine kinase has
been shown in vitro to catalyze the phosphorylation of
fructoselysine. It is proposed that fructoselysine is
released from glycated proteins during human digestion
and is partly metabolized by bacteria in the hind gut
using a protein such as fructoselysine kinase. This
family is found only in bacterial sequences, and its
oligomeric state is currently unknown.
Length = 264
Score = 64.3 bits (157), Expect = 3e-12
Identities = 54/243 (22%), Positives = 83/243 (34%), Gaps = 31/243 (12%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+GAVG D+ + S G+ + + A + +G ++N
Sbjct: 42 IGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENA-VADVELVDGDRIFGLSNKGGVARE 100
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFL----TVSPESILEVAKVALSCTIRNINY---LH 113
P A+ Y+S F L S E LE A AL I++
Sbjct: 101 HPF------------EADLEYLSQFDLVHTGIYSHEGHLEKALQALVGAGALISFDFSDR 148
Query: 114 HRFIYLVL-IDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIIL 172
YL L + AF + E++ A + + ++ I+T+G+ I
Sbjct: 149 WDDDYLQLVCPYVDFAFFSASDLSDEEVKAKLKEAVS------RGAKLVIVTRGEDGAIA 202
Query: 173 SQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFL-SQLIKGEPLSVCIECGVWAAQHIIQ 231
VVDT GAGDSF+ GFL S L G ++ + G A
Sbjct: 203 YDGAVFYS---VAPRPVEVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFAAKTCG 259
Query: 232 VSG 234
G
Sbjct: 260 HEG 262
>gnl|CDD|238922 cd01947, Guanosine_kinase_like, Guanosine kinase-like sugar
kinases. Found in bacteria and archaea, the guanosine
kinase-like group is part of the ribokinase/pfkB sugar
kinase superfamily. Its oligomerization state is unknown
at this time.
Length = 265
Score = 52.0 bits (125), Expect = 5e-08
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 156 NRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
R I+T+G+ IL G+ V A V D+ GAGDSF GF+ L+KG +
Sbjct: 188 PFPRYLIVTEGELGAILYPGGR--YNHVPAKKA-KVPDSTGAGDSFAAGFIYGLLKGWSI 244
Query: 216 SVCIECGVWAAQHIIQ 231
+E G +
Sbjct: 245 EEALELGAQCGAICVS 260
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases
that accept a wide variety of substrates, including
carbohydrates and aromatic small molecules, all are
phosphorylated at a hydroxyl group. The superfamily
includes ribokinase, fructokinase, ketohexokinase,
2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase,
the minor 6-phosphofructokinase (PfkB),
inosine-guanosine kinase, and adenosine kinase. Even
though there is a high degree of structural conservation
within this superfamily, their multimerization level
varies widely, monomeric (e.g. adenosine kinase),
dimeric (e.g. ribokinase), and trimeric (e.g THZ
kinase).
Length = 196
Score = 49.0 bits (117), Expect = 3e-07
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 118 YLVLIDFEALAFAKQQNF-QTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQNG 176
L + EA A +++ E A AL +S PK + I+T G+K I++ G
Sbjct: 112 ILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKGPK-------VVIVTLGEKGAIVATRG 164
Query: 177 KTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLI 210
T E V P + VVDT GAGD+F+ + L
Sbjct: 165 GT-EVHVPAFPVK-VVDTTGAGDAFLAALAAGLA 196
>gnl|CDD|182090 PRK09813, PRK09813, fructoselysine 6-kinase; Provisional.
Length = 260
Score = 49.0 bits (117), Expect = 5e-07
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 160 ITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCI 219
+ I+T G+ I + + P VVDT GAGDSF+ GFL + G L +
Sbjct: 187 VVIVTLGENGSIAWDGAQFWRQAPE--PVT-VVDTMGAGDSFIAGFLCGWLAGMTLPQAM 243
Query: 220 ECGVWAAQHIIQVSG 234
G A IQ G
Sbjct: 244 AQGTACAAKTIQYHG 258
>gnl|CDD|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase. Found only in
bacteria, YegV-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 289
Score = 48.2 bits (115), Expect = 1e-06
Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 33/250 (13%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFT 61
G +G N++D + + G+ + + G L+ +G+ RS ++ A ++
Sbjct: 56 GPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGE-RSFISISGAEQDWS 114
Query: 62 PDHLHVPENNKLIQNAEYYYVSGFFL---TVSPESILEV-----AKVAL----SCTIRNI 109
+ + +Y Y+SG+ L S +LE A L I +I
Sbjct: 115 TEWFATLT----VAPYDYVYLSGYTLASENASKVILLEWLEALPAGTTLVFDPGPRISDI 170
Query: 110 NYLHHRFIYLVLIDFEALAFAKQQ-NFQTEDLHAIALKISNLPKQNPNRERITIITQGDK 168
+ ++ + +++ E A + + + ++ +
Sbjct: 171 P---DTILQALMAKRPIWSCNREEAAIFAERGDPAAEASA---LRIYAKTAAPVVVRLGS 224
Query: 169 --PIILSQNGKTTEFPVQRLPAE--SVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVW 224
I +G T +P VDT GAGD+ GG L+ L KG L+ +
Sbjct: 225 NGAWIRLPDGNT-----HIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMSLADAVLLANA 279
Query: 225 AAQHIIQVSG 234
AA ++ SG
Sbjct: 280 AAAIVVTRSG 289
>gnl|CDD|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.
Length = 304
Score = 48.0 bits (115), Expect = 1e-06
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 158 ERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQL 209
+ ++T G + +++ G+ FP + VDT GAGD+FV G L+ L
Sbjct: 213 IALLLVTLGAEGVLVHTRGQVQHFPAPSV---DPVDTTGAGDAFVAGLLAGL 261
>gnl|CDD|238920 cd01945, ribokinase_group_B, Ribokinase-like subgroup B. Found in
bacteria and plants, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time. .
Length = 284
Score = 47.7 bits (114), Expect = 2e-06
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 159 RITIITQGDKPII-LSQNGKTTEFPVQRLPAESV--VDTNGAGDSFVGGFLSQLIKGEPL 215
+T G+ + L ++G+ +PA V VDT GAGD F G F L +G PL
Sbjct: 204 PFVAVTLGEAGCLWLERDGEL-----FHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMPL 258
>gnl|CDD|215183 PLN02323, PLN02323, probable fructokinase.
Length = 330
Score = 43.1 bits (102), Expect = 6e-05
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 175 NGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIK 211
G+ F V+ VDT GAGD+FVGG LSQL K
Sbjct: 250 KGRVEGFKVK------AVDTTGAGDAFVGGLLSQLAK 280
>gnl|CDD|238912 cd01937, ribokinase_group_D, Ribokinase-like subgroup D. Found in
bacteria and archaea, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 254
Score = 42.0 bits (99), Expect = 9e-05
Identities = 47/215 (21%), Positives = 77/215 (35%), Gaps = 28/215 (13%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFT 61
VG+D + F ++ + T T + T+ G+ R+L+A AA T
Sbjct: 45 TKVGRDYPDKWSD----LFDNGIEVISLLSTETTTFELNYTNEGRTRTLLA-KCAAIPDT 99
Query: 62 PDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCT--IRN-INYLHHRFIY 118
E+ AE + +SP + A ++L +R + +
Sbjct: 100 -------ESPLSTITAEIVILGPVPEEISPSLFRKFAFISLDAQGFLRRANQEKLIKCVI 152
Query: 119 LVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDK-PIILSQNGK 177
L L D L+ + + +A I + I+T G++ I NGK
Sbjct: 153 LKLHDVLKLSRVEAE--VISTPTELARLIKETGV------KEIIVTDGEEGGYIFDGNGK 204
Query: 178 TTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKG 212
T + VVD GAGD F+ FL + G
Sbjct: 205 YTIPA----SKKDVVDPTGAGDVFLAAFLYSRLSG 235
>gnl|CDD|178005 PLN02379, PLN02379, pfkB-type carbohydrate kinase family protein.
Length = 367
Score = 42.5 bits (100), Expect = 1e-04
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 183 VQRLPA---ESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSG 234
V R+PA + VD GAGD F GFL LIKG L C + G + +++ G
Sbjct: 286 VVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLSLEECCKVGACSGGSVVRALG 340
>gnl|CDD|236858 PRK11142, PRK11142, ribokinase; Provisional.
Length = 306
Score = 41.4 bits (98), Expect = 2e-04
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 160 ITIITQGDKPIILSQNGKTTEFPVQRLPAESV--VDTNGAGDSFVGGFLSQLIKGEPL 215
+IT G + + LS+NG+ QR+P V VDT AGD+F G ++ L++G+PL
Sbjct: 217 TVLITLGSRGVWLSENGEG-----QRVPGFRVQAVDTIAAGDTFNGALVTALLEGKPL 269
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 40.3 bits (95), Expect = 5e-04
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 162 IITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
I++ G +L P VV T GAGDS V GFL+ L+KG+ L
Sbjct: 219 IVSLGADGALLVTAEGVYFA---SPPKVQVVSTVGAGDSMVAGFLAGLLKGKSL 269
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose
6-phosphate pathway, which responsible for breakdown of
the galactose moiety during lactose metabolism by
bacteria such as L. lactis.
Length = 289
Score = 39.8 bits (94), Expect = 6e-04
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 185 RLPAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
P VV T GAGDS V GF++ L +G L
Sbjct: 238 SPPKVKVVSTVGAGDSMVAGFVAGLAQGLSL 268
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
This family consists largely of 1-phosphofructokinases,
but also includes tagatose-6-kinases and
6-phosphofructokinases.
Length = 303
Score = 39.5 bits (93), Expect = 7e-04
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
P VV+T GAGDS V GFL+ L +G L
Sbjct: 239 PKVEVVNTVGAGDSMVAGFLAGLARGLSL 267
>gnl|CDD|185541 PTZ00292, PTZ00292, ribokinase; Provisional.
Length = 326
Score = 39.3 bits (92), Expect = 8e-04
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 162 IITQGDKPIILSQNGKTTEFPVQRLPAESV--VDTNGAGDSFVGGFLSQLIKGEPLSVCI 219
IIT G ++ + PV +P + V VDT GAGD FVG + +G+ L
Sbjct: 239 IITLGANGCLIVEKENE---PVH-VPGKRVKAVDTTGAGDCFVGSMAYFMSRGKDLKESC 294
Query: 220 E 220
+
Sbjct: 295 K 295
>gnl|CDD|178237 PLN02630, PLN02630, pfkB-type carbohydrate kinase family protein.
Length = 335
Score = 38.2 bits (89), Expect = 0.002
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 162 IITQGDKPI-ILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
I+T G K I ++G E V PA VD GAGDSF+GGF++ L++G +
Sbjct: 207 IVTNGKKGCRIYWKDG---EMRVPPFPA-IQVDPTGAGDSFLGGFVAGLVQGLAV 257
>gnl|CDD|238914 cd01939, Ketohexokinase, Ketohexokinase (fructokinase, KHK)
catalyzes the phosphorylation of fructose to
fructose-1-phosphate (F1P), the first step in the
metabolism of dietary fructose. KHK can also
phosphorylate several other furanose sugars. It is
found in higher eukaryotes where it is believed to
function as a dimer and requires K(+) and ATP to be
active. In humans, hepatic KHK deficiency causes
fructosuria, a benign inborn error of metabolism.
Length = 290
Score = 37.8 bits (88), Expect = 0.003
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 171 ILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGE-PLSVCIECGVWAAQHI 229
L +G+ P VVDT GAGD+F + L KG LS ++ G A
Sbjct: 226 ALGPDGEYVHSPAH--KPIRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDFGNRVASQK 283
Query: 230 IQVSG 234
G
Sbjct: 284 CTGVG 288
>gnl|CDD|238921 cd01946, ribokinase_group_C, Ribokinase-like subgroup C. Found
only in bacteria, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 277
Score = 37.8 bits (88), Expect = 0.003
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 159 RITIITQGDKPIIL-SQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQL 209
+ II +G+ +L + +G F P ESV D GAGD+F GGF+ L
Sbjct: 196 KALIIKRGEYGALLFTDDGY---FAAPAYPLESVFDPTGAGDTFAGGFIGYL 244
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in
concert with the fructose-specific phosphotransferase
system (PTS) which imports fructose as
fructose-1-phosphate. The action of
1-phosphofructokinase results in
beta-D-fructose-1,6-bisphosphate and is an entry point
into glycolysis (GenProp0688).
Length = 304
Score = 37.2 bits (87), Expect = 0.005
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
P VV T GAGDS V GFL+ L G L
Sbjct: 239 PKGEVVSTVGAGDSMVAGFLAGLESGLSL 267
>gnl|CDD|238918 cd01943, MAK32, MAK32 kinase. MAK32 is a protein found primarily
in fungi that is necessary for the structural stability
of L-A particles. The L-A virus particule is a
specialized compartment for the transcription and
replication of double-stranded RNA, known to infect
yeast and other fungi. MAK32 is part of the host
machinery used by the virus to multiply.
Length = 328
Score = 35.0 bits (81), Expect = 0.023
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQ 231
+ VVD G G+SF+GGF + L + + G AA I+
Sbjct: 256 KSTKVVDPTGGGNSFLGGFAAGLALTKSIDEACIYGSVAASFAIE 300
>gnl|CDD|238577 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose
synthase involved in the biosynthesis of the
lipopolysaccharide (LPS) core precursor
ADP-L-glycero-D-manno-heptose. LPS plays an important
role in maintaining the structural integrity of the
bacterial outer membrane of gram-negative bacteria. RfaE
consists of two domains, a sugar kinase domain,
represented here, and a domain belonging to the
cytidylyltransferase superfamily.
Length = 304
Score = 34.1 bits (79), Expect = 0.044
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 162 IITQGDKPIILSQNGKTTEFPVQRLPAES--VVDTNGAGDSFVGGFLSQLIKGEPLSVCI 219
++T G++ + L + VQ +PA + V D GAGD+ + L G L
Sbjct: 223 LVTLGEEGMTLFERDG----EVQHIPALAKEVYDVTGAGDTVIATLALALAAGADLEEAA 278
Query: 220 ECGVWAA 226
AA
Sbjct: 279 FLANAAA 285
>gnl|CDD|181923 PRK09513, fruK, 1-phosphofructokinase; Provisional.
Length = 312
Score = 33.5 bits (77), Expect = 0.077
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEP 214
PA VV T GAGDS VGG + L+ E
Sbjct: 243 PACDVVSTVGAGDSMVGGLIYGLLMRES 270
>gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain.
Length = 121
Score = 30.3 bits (69), Expect = 0.37
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 81 YVSGFFLTVSPESILEVAKVA-----LSCTIRNINYLHHRFIYLVLIDFEALAFAK 131
++S + TV I+ V F D E +F K
Sbjct: 64 FLSDEYDTVPLSDIIGKCNVLYKSDYPGLRPEGSIGEPDVFFCESAYDPEKGSFKK 119
>gnl|CDD|225149 COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme
metabolism].
Length = 281
Score = 30.3 bits (69), Expect = 0.68
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 179 TEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVS 233
+P NG GD F L++L++G L+ +E A ++Q +
Sbjct: 201 AWHISPLVP----FIPNGTGDLFSALLLARLLEGLSLTQALERATAAVYEVLQET 251
>gnl|CDD|214596 smart00276, GLECT, Galectin. Galectin - galactose-binding lectin.
Length = 128
Score = 28.7 bits (65), Expect = 1.4
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 134 NFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESV 191
++ +E+ P Q +TII Q D I T FP RLP ES+
Sbjct: 61 SWGSEERE------GGFPFQPGQPFDLTIIVQPDHFQIFVNGVHITTFP-HRLPLESI 111
>gnl|CDD|176357 cd01617, DCX, Ubiquitin-like domain of DCX. DCX The
ubiquitin-like DCX domain is present in tandem within
the N-terminal half of the doublecortin protein.
Doublecortin is expressed in migrating neurons.
Mutations in the gene encoding doublecortin cause
lissencephaly in males and 'double-cortex syndrome' in
females.
Length = 80
Score = 27.5 bits (62), Expect = 1.5
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 55 AAANLFTPDHLHVPENNKLIQNAEYYYVSGF 85
A L+T D H +++ Y SG
Sbjct: 45 AVRKLYTLDGGHRVSLLDELEDGGVYVASGR 75
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 467
Score = 29.6 bits (67), Expect = 1.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 162 IITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
++T+ +K + L Q GK FP + A+ V D GAGD+ + + L G L
Sbjct: 229 LVTRSEKGMTLFQEGKPLHFPAR---AKEVYDVTGAGDTVIAVLAAALAAGASL 279
>gnl|CDD|215434 PLN02813, PLN02813, pfkB-type carbohydrate kinase family protein.
Length = 426
Score = 29.4 bits (66), Expect = 1.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 192 VDTNGAGDSFVGGFLSQLIKGEP 214
VDT GAGD++ G L L++G
Sbjct: 347 VDTCGAGDAYAAGILYGLLRGVS 369
>gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the
bidirectional interconversion of glucose-1-phosphate
(G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
1,6-diphosphate intermediate, an important metabolic
step in prokaryotes and eukaryotes. In one direction,
G-1-P produced from sucrose catabolism is converted to
G-6-P, the first intermediate in glycolysis. In the
other direction, conversion of G-6-P to G-1-P generates
a substrate for synthesis of UDP-glucose which is
required for synthesis of a variety of cellular
constituents including cell wall polymers and
glycoproteins. The PGM1 family also includes a
non-enzymatic PGM-related protein (PGM-RP) thought to
play a structural role in eukaryotes, as well as
pp63/parafusin, a phosphoglycoprotein that plays an
important role in calcium-regulated exocytosis in
ciliated protozoans. PGM1 belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 548
Score = 29.5 bits (67), Expect = 1.9
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 139 DLHAIALKISNLPKQNPNRERITIIT 164
L IALK+S L K+ RE T+IT
Sbjct: 524 PLIEIALKLSKL-KEFTGREEPTVIT 548
>gnl|CDD|238578 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a
key role in the synthesis of the active coenzyme
pyridoxal-5'-phosphate (PLP), by catalyzing the
phosphorylation of the precursor vitamin B6 in the
presence of Zn2+ and ATP. Mammals are unable to
synthesize PLP de novo and require its precursors in the
form of vitamin B6 (pyridoxal, pyridoxine, and
pyridoxamine) from their diet. Pyridoxal kinase encoding
genes are also found in many other species including
yeast and bacteria.
Length = 254
Score = 28.7 bits (65), Expect = 2.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 195 NGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVS 233
NG GD F L++L+KG+ L+ +E + +++ +
Sbjct: 214 NGTGDLFAALLLARLLKGKSLAEALEKALNFVHEVLEAT 252
>gnl|CDD|182361 PRK10294, PRK10294, 6-phosphofructokinase 2; Provisional.
Length = 309
Score = 28.6 bits (64), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 194 TNGAGDSFVGGFLSQLIKGEPLSVCIECGVWA 225
T GAGDS VG +L + L + GV A
Sbjct: 251 TVGAGDSMVGAMTLKLAENASLEEMVRFGVAA 282
>gnl|CDD|215195 PLN02341, PLN02341, pfkB-type carbohydrate kinase family protein.
Length = 470
Score = 29.0 bits (65), Expect = 2.6
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
+VVDT G GDSF I PL
Sbjct: 345 FKVNVVDTVGCGDSFAAAIALGYIHNLPL 373
>gnl|CDD|181269 PRK08176, pdxK, pyridoxal-pyridoxamine
kinase/hydroxymethylpyrimidine kinase; Reviewed.
Length = 281
Score = 27.7 bits (62), Expect = 5.0
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 192 VDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCT 236
D G GD F +S L+KG+ L+ A +++V T
Sbjct: 226 TDLKGTGDLFCAELVSGLLKGKALTDAAHR---AGLRVLEVMRYT 267
>gnl|CDD|182165 PRK09954, PRK09954, putative kinase; Provisional.
Length = 362
Score = 27.6 bits (61), Expect = 6.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKG 212
PA + VD+ GA D F+ G + ++G
Sbjct: 297 PAHTTVDSFGADDGFMAGLVYSFLEG 322
>gnl|CDD|185033 PRK15074, PRK15074, inosine/guanosine kinase; Provisional.
Length = 434
Score = 27.3 bits (61), Expect = 9.1
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 33 PTGTCAVLITDNGKARSLVANLAAANLFTPDHLHVPENNKLIQNA 77
P G C LI+++G+ R+ + N P+ +PE +I A
Sbjct: 148 PIGRCFTLISEDGE-RTFAISPGHMNQLRPE--SIPE--DVIAGA 187
>gnl|CDD|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I. RfaE
is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in E.
coli, and separate proteins in some other genome. The
longer, N-terminal domain I (this family) is suggested
to act in D-glycero-D-manno-heptose 1-phosphate
biosynthesis, while domain II (TIGR02199) adds ADP to
yield ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 315
Score = 27.2 bits (61), Expect = 9.2
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 162 IITQGDKPI-ILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
++T+ +K + + ++ G+ P Q A V D GAGD+ + L G L
Sbjct: 231 LVTRSEKGMTLFTREGEPIHIPAQ---AREVYDVTGAGDTVIATLALALAAGASL 282
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,064,844
Number of extensions: 1131694
Number of successful extensions: 933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 56
Length of query: 239
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 145
Effective length of database: 6,768,326
Effective search space: 981407270
Effective search space used: 981407270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)