RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6977
(239 letters)
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi
tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles
gambiae}
Length = 365
Score = 253 bits (648), Expect = 6e-84
Identities = 121/255 (47%), Positives = 161/255 (63%), Gaps = 20/255 (7%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
G VG+D Y+ ILE +A+ G+ V+YQ T PTGTCAVL+T RSL ANLAAAN F
Sbjct: 103 FGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVLVTG--TQRSLCANLAAANDF 160
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVA--------KVALSCTIRNINYL 112
TP+HL N +Q A+++YVSGFF TVS ES L VA ++ + +
Sbjct: 161 TPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQF 220
Query: 113 HHRFIYLVL--IDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIIT 164
+ + + +D EA+A AK+ N+ TEDL I +I+ LPK+N R+RI IIT
Sbjct: 221 YKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIIT 280
Query: 165 QGDKPIILSQNG--KTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECG 222
QG P++L + G EFPVQ+L E +VDTNGAGD+FVGGFL+QL++ + VCI+CG
Sbjct: 281 QGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFVGGFLAQLLQSRTVDVCIKCG 340
Query: 223 VWAAQHIIQVSGCTL 237
+WAA+ IIQ SGCT
Sbjct: 341 IWAAREIIQRSGCTF 355
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor
CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Length = 347
Score = 250 bits (640), Expect = 6e-83
Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 26/257 (10%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+G + D Y +L+ A G+V+ +H +G CAV IT K R+LVA+L AAN
Sbjct: 89 VGCIADDRYGKVLKEAAEHEGIVMAVEHTTKAGSGACAVCITG--KERTLVADLGAANHL 146
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVA----------LS---CTIR 107
+ +H+ P + + + +Y SGF LTV +L+ + A LS
Sbjct: 147 SSEHMRSPAVVRAMDESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMINLSAPFI--- 203
Query: 108 NINYLHHRFIYLV-LIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERI 160
+ + + ++ D EA FA + T+ + IA + + + R+
Sbjct: 204 -MQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWDTDCVEEIARRAVSEVPYTGTKGRV 262
Query: 161 TIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIE 220
+ T+ + +L+ PV +L + V+D NGAGD+F+GGFLS G+ L C E
Sbjct: 263 VVFTRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAVGKDLRRCCE 322
Query: 221 CGVWAAQHIIQVSGCTL 237
G + AQ +IQ GC+
Sbjct: 323 TGHYTAQEVIQRDGCSF 339
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 248 bits (634), Expect = 5e-82
Identities = 104/254 (40%), Positives = 149/254 (58%), Gaps = 19/254 (7%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
G +G D + +IL+ KA+E + Y + +PTGTCA IT G RSL+ANLAAAN +
Sbjct: 87 FGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACIT--GDNRSLIANLAAANCY 144
Query: 61 -TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVA--------KVALSCTIRNINY 111
HL + +N L++ A Y++GFFLTVSPES+L+VA L+ + I+
Sbjct: 145 KKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQ 204
Query: 112 LHH-RFIYLV-LIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITII 163
+ + ++ +D EA FA++Q F+T+D+ IA K LPK N R+RI I
Sbjct: 205 FYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIF 264
Query: 164 TQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGV 223
TQG I++ + T F V + ++DTNGAGD+FVGGFLSQL+ +PL+ CI G
Sbjct: 265 TQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGFLSQLVSDKPLTECIRAGH 324
Query: 224 WAAQHIIQVSGCTL 237
+AA II+ +GCT
Sbjct: 325 YAASIIIRRTGCTF 338
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate
conformation, signaling protein,transferase; HET: ACP;
1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A*
2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A*
1lik_A*
Length = 383
Score = 217 bits (554), Expect = 2e-69
Identities = 74/272 (27%), Positives = 116/272 (42%), Gaps = 41/272 (15%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
MGA+G D +L+ + GL ++ + TG CAVLI + K R+L +L A F
Sbjct: 111 MGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLINE--KERTLCTHLGACGSF 168
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVA---------KVALSCTIRNINY 111
A +Y + + LT +P++ LEVA L+ +
Sbjct: 169 RLPED----WTTFASGALIFYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCVE 224
Query: 112 LHHRFIYLVL--IDF------EALAFAKQQNFQTEDLHAIALKISN-------------L 150
L+ + +L + E AK N + A++
Sbjct: 225 LYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLT 284
Query: 151 PKQNPNRERITIITQGDKPIILSQNGKT-----TEFPVQRLPAESVVDTNGAGDSFVGGF 205
QN + ++ ++T+G P+I ++ E V + AE +VDTNGAGD+FVGGF
Sbjct: 285 AGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVGGF 344
Query: 206 LSQLIKGEPLSVCIECGVWAAQHIIQVSGCTL 237
L L +G+ + CI CG AQ +IQ G +L
Sbjct: 345 LYALSQGKTVKQCIMCGNACAQDVIQHVGFSL 376
>4e3a_A Sugar kinase protein; structural genomics, protein structure
initiative, nysgrc, S kinase, PSI-biology; HET: ADN;
1.63A {Rhizobium etli} PDB: 3ubo_A*
Length = 352
Score = 109 bits (275), Expect = 1e-28
Identities = 57/258 (22%), Positives = 100/258 (38%), Gaps = 48/258 (18%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKYQ-HHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
G V D DI G+ + + PT + +T++G+ RS+ L A
Sbjct: 101 GNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPTARSMIFVTEDGE-RSMNTYLGACVEL 159
Query: 61 TPDHLHVPENNKLIQNAEYYYVSG--FFLTVSPESILEVA--------KVALS-----CT 105
P+ + ++ +A+ Y G + + E+IL+ A +++++ C
Sbjct: 160 GPEDV----EADVVADAKVTYFEGYLWDPPRAKEAILDCARIAHQHGREMSMTLSDSFC- 214
Query: 106 IRNINYLHHRFIYLVL---IDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPN 156
++ F+ L+ +D EAL+ +QT+D +I+ K
Sbjct: 215 ---VDRYRGEFLDLMRSGKVDIVFANRQEALSL-----YQTDDFEEALNRIAADCK---- 262
Query: 157 RERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLS 216
I +T + ++ + + VVDT GAGD F GFL +G L
Sbjct: 263 ---IAAVTMSENGAVILKGRERYYVNAI--RIREVVDTTGAGDLFASGFLYGYTQGRSLE 317
Query: 217 VCIECGVWAAQHIIQVSG 234
C + G AA +IQ G
Sbjct: 318 DCGKLGCLAAGIVIQQIG 335
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 90.8 bits (226), Expect = 7e-22
Identities = 35/250 (14%), Positives = 77/250 (30%), Gaps = 32/250 (12%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTE-PTGTCAVLITDNGKARSLVANLAAANL 59
MG++ + +D + + + ++Y T V+I + +R+++ +
Sbjct: 74 MGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPD 133
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEV----AKVALSCTIR---NINYL 112
+ + ++ ++ G + + + + + IR +
Sbjct: 134 VSATDFE----KVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKP 189
Query: 113 HHRFIYLV-LIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQ 165
L D A Q E L + ++ + +
Sbjct: 190 REELFQLFGYGDVVFVSKDVAKHLGFQSAE--EALRGLYGRVRKGA--------VLVCAW 239
Query: 166 GDKP-IILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVW 224
++ L +GK P VVDT GAGD+F + L +G + + G
Sbjct: 240 AEEGADALGPDGKLLHSDAF--PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQ 297
Query: 225 AAQHIIQVSG 234
A + G
Sbjct: 298 VAGKKCGLQG 307
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 87.7 bits (218), Expect = 1e-20
Identities = 44/261 (16%), Positives = 84/261 (32%), Gaps = 39/261 (14%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLV--ANLAAA 57
+ A+G D++S + + Q + G + G R+ N AAA
Sbjct: 53 VTALGTDSFSQQMLDAWHGENVDTSLTQRMENRLPGLYYIETDSTG-ERTFYYWRNEAAA 111
Query: 58 NLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRN-------IN 110
+ + + N +Y Y+SG L + + E L N
Sbjct: 112 KFWLASEQS-AAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNN 170
Query: 111 YLHH--------RFIY--------LVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQN 154
Y + +Y + + + + + + + +
Sbjct: 171 YRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDAL----WGQQPVEDVIAR---THNAG 223
Query: 155 PNRERITIITQGDKP-IILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGE 213
+ ++ +G ++ + P +LP E V+DT AGDSF G+L+ + G
Sbjct: 224 V---KEVVVKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGG 280
Query: 214 PLSVCIECGVWAAQHIIQVSG 234
+ G A +IQ G
Sbjct: 281 SAENAAKRGHLTASTVIQYRG 301
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Length = 328
Score = 87.7 bits (218), Expect = 1e-20
Identities = 56/266 (21%), Positives = 81/266 (30%), Gaps = 45/266 (16%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARS---LVANLAA 56
A+G D S + + S G+ + G LIT RS AA
Sbjct: 72 FSAIGDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGL--YLITLEQGERSFAYWRGQSAA 129
Query: 57 ANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRN-------I 109
L + A+ Y SG L + + AL+
Sbjct: 130 RELAGDADA----LAAAMARADVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDP 185
Query: 110 NY---L-----HHRFIY--------LVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQ 153
N L + L FE A F A A + +
Sbjct: 186 NLRPRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAW----FGDAGPDATADR---YARA 238
Query: 154 NPNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGE 213
R ++ G + Q+G+ PV P VVDT AGDSF G L ++ G+
Sbjct: 239 GV---RSVVVKNGPHAVHFLQDGRRGRVPV--PPVAQVVDTTAAGDSFNAGLLDSVLAGQ 293
Query: 214 PLSVCIECGVWAAQHIIQVSGCTLGL 239
PL I A ++Q G + +
Sbjct: 294 PLETAIAAAAALAGQVVQGKGALVEV 319
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase,
structural genomics, joint center for structural
genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 296
Score = 84.5 bits (210), Expect = 1e-19
Identities = 51/253 (20%), Positives = 84/253 (33%), Gaps = 33/253 (13%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKAR-SLVANLAAANL 59
+ AVG D D + E L + + D PTGT V + D G + +A N+
Sbjct: 44 VSAVGNDELGDEIMEVFKEKQLKNQIERVD-YPTGTVQVTLDDEGVPCYEIKEGVAWDNI 102
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP-----ESILEVAKVALSCTIR-NINY-- 111
D L +L N L+ +IN
Sbjct: 103 PFTDEL-----KRLALNTRAVCFGSLAQRNEVSRATINRFLDTMPDIDGQLKIFDINLRQ 157
Query: 112 ------LHHRFIYLVLI----DFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERIT 161
+ I D E + ++ + DL + L K N ++
Sbjct: 158 DFYTKEVLRESFKRCNILKINDEELVTISRMFGYPGIDLQDKCWIL--LAKYNL---KML 212
Query: 162 IITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIEC 221
I+T G + G + ++P V DT GAGDSF F + ++ G+ + +
Sbjct: 213 ILTCGINGSYVFTPGVVSFQETPKVP---VADTVGAGDSFTAAFCASILNGKSVPEAHKL 269
Query: 222 GVWAAQHIIQVSG 234
V + ++ SG
Sbjct: 270 AVEVSAYVCTQSG 282
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199,
PSI-2, PR structure initiative 2; 1.86A {Agrobacterium
tumefaciens str}
Length = 317
Score = 83.0 bits (206), Expect = 5e-19
Identities = 39/248 (15%), Positives = 79/248 (31%), Gaps = 46/248 (18%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+ G D +++ A + G+ T + ++ +G +A++ LF
Sbjct: 59 IAPRGGDVTGEVVAEAARQAGVEDTPFTFLDRRTPSYTAILERDGNLVIALADMDLYKLF 118
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLT---VSPESILEVAKVALSCTIRNINYLHHRFI 117
TP L V + I + F L + +++ + +A +C
Sbjct: 119 TPRRLKVRAVREAIIAS------DFLLCDANLPEDTLTALGLIARACEKPLA-----AIA 167
Query: 118 -----------YLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERI 160
L ID EA A + E++ +
Sbjct: 168 ISPAKAVKLKAALGDIDILFMNEAEARALTGE---TAENVRDWPNILRKAGLSG------ 218
Query: 161 TIITQGDKPIILSQNGKTTEFPVQRLPAESV--VDTNGAGDSFVGGFLSQLIKGEPLSVC 218
++T+G ++ + P D GAGD+ G+L+ + +G+ +
Sbjct: 219 GVVTRGASEVVAFNGTEKAILH----PPLIREVKDVTGAGDAMASGYLAAIAEGKTIREA 274
Query: 219 IECGVWAA 226
+ G AA
Sbjct: 275 LRQGAAAA 282
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 79.2 bits (196), Expect = 1e-17
Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 47/258 (18%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAANL 59
M +GKD + + + ++ + + T L+T++G+ + +
Sbjct: 63 MSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWK 122
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLT--VSPESILEVAKVA---------------L 102
D + + A+ ++ F + + +++ E+ A L
Sbjct: 123 LNIDDV----DFARFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQMIICADMIKPRL 178
Query: 103 SCTIRNINYLHHRFIYLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPN 156
+ T+ +I L +D+ EA E L IA
Sbjct: 179 NETLDDICEA------LSYVDYLFPNFAEAKLL-----TGKETLDEIADC---FLACGV- 223
Query: 157 RERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLS 216
+ +I G + + T + P + + +DT GAGD+F GF++ L++G+ L
Sbjct: 224 --KTVVIKTGKDGCFIKRGDMTMKVPA--VAGITAIDTIGAGDNFASGFIAALLEGKNLR 279
Query: 217 VCIECGVWAAQHIIQVSG 234
C A + G
Sbjct: 280 ECARFANATAAISVLSVG 297
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 78.8 bits (195), Expect = 2e-17
Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 37/243 (15%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAANL 59
M +G D + + + + G + + T T ++ +NG+ S +A++ +
Sbjct: 62 MSILGNDEHGKSIVEHSKKIGYHMDDSMVIEGGSTPTYLAILDENGEMVSAIADMKSIGA 121
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLT---VSPESILEVAKVALSCTI-------RNI 109
D + ++ +NAEY + +
Sbjct: 122 MNTDFID--SKREIFENAEY------TVLDSDNPEIMEYLLKNFKDKTNFILDPVSAEKA 173
Query: 110 NYLHHRFIYLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITII 163
+++ H + EA A T+DL + L + I
Sbjct: 174 SWVKH---LIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGLGIKK------VFI 224
Query: 164 TQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGV 223
+ I + + + + GAGDSFV G + P+ ++ +
Sbjct: 225 SLDADGIFYNDGVSCGKIKATEVDV---KNVTGAGDSFVAGLGYGYMNKMPIEDIVKFAM 281
Query: 224 WAA 226
+
Sbjct: 282 TMS 284
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
hyperthermophIle, ribokinase ribokinase fold; 1.70A
{Methanococcus jannaschii} PDB: 2c49_A
Length = 302
Score = 78.0 bits (193), Expect = 3e-17
Identities = 46/255 (18%), Positives = 85/255 (33%), Gaps = 53/255 (20%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAANL 59
+ VG D + E + + + + E T + + + AA
Sbjct: 62 LSCVGYDFKNSGYERYLKNLDINISKLYYSEEEETPKAWIFTDKDN-NQITFFLWGAAKH 120
Query: 60 FTP--------DHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNIN- 110
+ + +H+ + PE L+ AK A + + +
Sbjct: 121 YKELNPPNFNTEIVHIATGD-------------------PEFNLKCAKKAYGNNLVSFDP 161
Query: 111 -YLHHRFIYLVLIDFEALA---------FAKQQNFQTEDLHAIALKISNLPKQNPNRERI 160
++ +L++ F + N ++ ++ L
Sbjct: 162 GQDLPQYSKEMLLEIIEHTNFLFMNKHEFERASNLLNFEIDDYLERVDAL---------- 211
Query: 161 TIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIE 220
I+T+G K ++ K E P + A V+D GAGDS+ GFLS +KG L C
Sbjct: 212 -IVTKGSKGSVIYTKDKKIEIPC--IKAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGL 268
Query: 221 CGVWAAQHIIQVSGC 235
G A +++ GC
Sbjct: 269 IGAATASFVVEAKGC 283
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics
consortium, TBSGC; 1.50A {Mycobacterium tuberculosis}
PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Length = 334
Score = 76.6 bits (189), Expect = 1e-16
Identities = 43/257 (16%), Positives = 77/257 (29%), Gaps = 52/257 (20%)
Query: 1 MGAVGKD--NYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAA 57
+GA G D +Y D L+ G+ + +T T + A+ A
Sbjct: 77 VGAAGADFADYRDWLK----ARGVNCDHVLISETAHTARFTCTTDVDM-AQIASFYPGAM 131
Query: 58 NLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYL----- 112
+ + + I E + + + C + +
Sbjct: 132 SEARNIK--LADVVSAIGKPEL-------VIIGANDPEAMFLHTEECRKLGLAFAADPSQ 182
Query: 113 -HHRFI------------YLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRER 159
R YL D+E + + D+ A +
Sbjct: 183 QLARLSGEEIRRLVNGAAYLFTNDYEWDLLLSKTGWSEADVMA--------------QID 228
Query: 160 ITIITQGDK-PIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVC 218
+ + T G K ++ +G T V +P S D G GD+F GFL+ G L
Sbjct: 229 LRVTTLGPKGVDLVEPDGTTIHVGV--VPETSQTDPTGVGDAFRAGFLTGRSAGLGLERS 286
Query: 219 IECGVWAAQHIIQVSGC 235
+ G A +++ +G
Sbjct: 287 AQLGSLVAVLVLESTGT 303
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 75.3 bits (186), Expect = 3e-16
Identities = 46/267 (17%), Positives = 86/267 (32%), Gaps = 51/267 (19%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLI-TDNGKARSLV---ANLA 55
+ VG D + G+ V + + + PTG + + A
Sbjct: 53 IAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYYRKGSA 112
Query: 56 AANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRN---INY- 111
+ L +P+ + + + +++A+ + SG L +S + E A N
Sbjct: 113 GSKL-SPEDV----DEEYVKSADLVHSSGITLAIS-STAKEAVYKAFEIASNRSFDTNIR 166
Query: 112 ----------------LHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNP 155
L + ++ D + D A S+ +
Sbjct: 167 LKLWSAEEAKREILKLLSKFHLKFLITDTDDSKII----LGESDPDKAAKAFSDYAE--- 219
Query: 156 NRERITIITQGDKPIILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQLIKG 212
I ++ G K I+ +GK + V V D GAGD+ G FLS KG
Sbjct: 220 ----IIVMKLGPKGAIVYYDGKKYYSSGYQVP------VEDVTGAGDALGGTFLSLYYKG 269
Query: 213 EPLSVCIECGVWAAQHIIQVSGCTLGL 239
+ ++ + A+ + + G L
Sbjct: 270 FEMEKALDYAIVASTLNVMIRGDQENL 296
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 74.9 bits (185), Expect = 4e-16
Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 49/266 (18%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLV--ANLAAA 57
+ VG D + DI + + G+ ++ E TG+ V ++G R + AA
Sbjct: 57 ISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGD-RDFIFNIKNAAC 115
Query: 58 NLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP--ESILEVAKVALS--CTI------- 106
+ H+ + ++++ ++++ G L +++ + + + I
Sbjct: 116 GKLSAQHV----DENILKDCTHFHIMGSSLFSFHMVDAVKKAVTIVKANGGVISFDPNIR 171
Query: 107 ----------RNINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPN 156
++++ + + +
Sbjct: 172 KEMLDIPEMRDALHFVLELT-DIYMPSEGEVLLL----SPHSTPERAIAGFLEEGV---- 222
Query: 157 RERITIITQGDKPIILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGE 213
+ I+ +G++ + +PV+ VD GAGD F G +++ G
Sbjct: 223 --KEVIVKRGNQGASYYSANEQFHVESYPVE------EVDPTGAGDCFGGAWIACRQLGF 274
Query: 214 PLSVCIECGVWAAQHIIQVSGCTLGL 239
++ + G G
Sbjct: 275 DAHRALQYANACGALAVTRRGPMEGT 300
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2-
keto-3-deoxygluconate kinase; 2.00A {Sulfolobus
solfataricus} PDB: 2var_A*
Length = 313
Score = 74.9 bits (185), Expect = 5e-16
Identities = 46/269 (17%), Positives = 85/269 (31%), Gaps = 53/269 (19%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTE-PTGT--CAVLITDNGKARSLV---ANL 54
+ VG D + + + G+ + D E TG K LV
Sbjct: 53 IARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMK-SELVYYRKGS 111
Query: 55 AAANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRN---INY 111
A + L +P+ + N ++N+ + +G L +S ++ E A N
Sbjct: 112 AGSRL-SPEDI----NENYVRNSRLVHSTGITLAIS-DNAKEAVIKAFELAKSRSLDTNI 165
Query: 112 ------------------LHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQ 153
L I +++ D + D K +
Sbjct: 166 RPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKIL----LDVTDPDEAYRK---YKEL 218
Query: 154 NPNRERITIITQGDKPIILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQLI 210
++ + G K I ++ + V V D GAGD+ G F+S +
Sbjct: 219 GV---KVLLYKLGSKGAIAYKDNVKAFKDAYKVP------VEDPTGAGDAMAGTFVSLYL 269
Query: 211 KGEPLSVCIECGVWAAQHIIQVSGCTLGL 239
+G+ + + G+ A+ +I V G
Sbjct: 270 QGKDIEYSLAHGIAASTLVITVRGDNELT 298
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 74.9 bits (185), Expect = 5e-16
Identities = 41/265 (15%), Positives = 85/265 (32%), Gaps = 49/265 (18%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTE-PTGTCAVLITDNGKARSLVANLAAANL 59
+ +G D + + L ++ D E T V ++ + + + A
Sbjct: 74 ISRLGADAFGNYLLDVLKGEQIITDGIQQDKERRTTI--VYVSKSTRTPDWLPYREADMY 131
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP--ESILEVAKVALS--CTI--------- 106
D + +LI+ ++ +++S F L+ P ++ ++ A +
Sbjct: 132 LQEDDI----IFELIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKV 187
Query: 107 ---------RNINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNR 157
+ + R V + F + + +
Sbjct: 188 LWPEGDDGAGVVEEIISRA-DFVKPSLDDARHL----FGPDSPENYVKR---YLELGV-- 237
Query: 158 ERITIITQGDKPIILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEP 214
+ I+T G++ +I S + F VD GAGD+F GF+ L+ G
Sbjct: 238 -KAVILTLGEEGVIASDGEEIIRIPAFSED------AVDVTGAGDAFWSGFICGLLDGYT 290
Query: 215 LSVCIECGVWAAQHIIQVSGCTLGL 239
+ I+ G A I+ G +
Sbjct: 291 VKRSIKLGNGVAAFKIRGVGALSPV 315
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 72.6 bits (179), Expect = 3e-15
Identities = 36/267 (13%), Positives = 73/267 (27%), Gaps = 50/267 (18%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLV---ANLAA 56
+ VG D + + L ++ G+ +Y T T I L A
Sbjct: 61 LSRVGNDPFGEYLLAELERLGVDNQYVATDQTFKTPVTFCEIFPPDD-FPLYFYREPKAP 119
Query: 57 ANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP-ESILEVAKVALS--CTI------- 106
+ + ++ A+ + + + P +
Sbjct: 120 DLNIESADV----SLDDVREADILWFTLTGFSEEPSRGTHREILTTRANRRHTIFDLDYR 175
Query: 107 -----------RNINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNP 155
+ + + + + E A + L ++
Sbjct: 176 PMFWESPEEATKQAEWALQHS-TVAVGNKEECEIA----VGETEPERAGRA---LLERGV 227
Query: 156 NRERITIITQGDKPIILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQLIKG 212
+ I+ QG K ++ +T E F V V++ GAGD+F G L+
Sbjct: 228 ---ELAIVKQGPKGVMAMTKDETVEVPPFFVD------VINGLGAGDAFGGALCHGLLSE 278
Query: 213 EPLSVCIECGVWAAQHIIQVSGCTLGL 239
PL + A + C+ +
Sbjct: 279 WPLEKVLRFANTAGALVASRLECSTAM 305
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc, transferase; 2.70A
{Polaromonas SP}
Length = 336
Score = 72.3 bits (178), Expect = 4e-15
Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 43/265 (16%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTE-PTGTCAVLITDNGKARSLV---ANLAA 56
+G D+ L + + G+ + D TG +G + AA
Sbjct: 78 ASRLGTDSMGRYLLAAMAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAA 137
Query: 57 ANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPES------ILEVAKVALSCTIRNIN 110
+++ + + + +A + + +G F +S + +++ + A + N
Sbjct: 138 SHM-GVADI----DEAWLLSARHLHATGVFPAISATTLPAARKTMDLMRAAGRSVSFDPN 192
Query: 111 Y--------------LHH--RFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQN 154
++ VL E F +A +
Sbjct: 193 LRPTLWATPELMRDAINDLATRADWVLPGMEEGRFL----TGETTPEGVA---RFYRQLG 245
Query: 155 PNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEP 214
++ ++ G + + P VVDT GAGD F G +S L+ G
Sbjct: 246 A---KLVVVKLGAEGAYFDGEAGSGRVAG--FPVAEVVDTVGAGDGFAVGVISALLDGLG 300
Query: 215 LSVCIECGVWAAQHIIQVSGCTLGL 239
+ ++ G W +QV G + GL
Sbjct: 301 VPEAVKRGAWIGARAVQVLGDSEGL 325
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 71.3 bits (175), Expect = 6e-15
Identities = 32/249 (12%), Positives = 70/249 (28%), Gaps = 39/249 (15%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFT 61
+++ S + + G V+ + T + + R ++AA+ FT
Sbjct: 57 TKCTREDVSKFSFLR--DNG--VEVVFLKSPRTTSIENRYGSDPDTRESFL-ISAADPFT 111
Query: 62 PDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYL------HHR 115
L E +++ + PE ++ V + + +
Sbjct: 112 ESDLAF-------IEGEAVHINPLWYGEFPEDLIPVLRRKVMFLSADAQGFVRVPENEKL 164
Query: 116 FIYLVLIDFEALAFAK---------QQNFQTEDLHAIALKISNLPKQNPNRERITIITQG 166
+ + L + + T DL I + +I + T
Sbjct: 165 VYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRESCRIIRSFGA------KIILATHA 218
Query: 167 DKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFL-SQLIKGEPLSVCIECGVWA 225
I+ +G E + S+ G GD+ FL + K + +
Sbjct: 219 SGVIVF--DGNFYEAS---FRSWSLEGRTGRGDTCTAAFLVGFVFKKMSIEKATKFAAAV 273
Query: 226 AQHIIQVSG 234
++ G
Sbjct: 274 TSVKMRHPG 282
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 71.1 bits (175), Expect = 1e-14
Identities = 45/268 (16%), Positives = 91/268 (33%), Gaps = 47/268 (17%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY--QHHDTEPTGTCAVLITDNGKARSLV--ANLAA 56
+G + D + +ES G+ + TG I + S++ A
Sbjct: 64 IGKIADDQHGRFIESYMRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEE-CSILMYRQDVA 122
Query: 57 ANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP-----ESILEVAKVALSCTIRNINY 111
+P+ + N I+ ++ VSG L+ SP + +AK + ++Y
Sbjct: 123 DLYLSPEEV----NEAYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDY 178
Query: 112 -------------LHHRFIYL---VLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNP 155
+ V+ E + + + D L K +P
Sbjct: 179 RPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRT-EKGDNDETIRY---LFKHSP 234
Query: 156 NRERITIITQGDKP-IILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQLIK 211
+ +I G + ++ G+ + + V+ T GAGDS+ FL LI
Sbjct: 235 ---ELIVIKHGVEGSFAYTKAGEAYRGYAYKTK------VLKTFGAGDSYASAFLYALIS 285
Query: 212 GEPLSVCIECGVWAAQHIIQVSGCTLGL 239
G+ + ++ G +A ++ + +
Sbjct: 286 GKGIETALKYGSASASIVVSKHSSSDAM 313
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II,
NYSGXRC, struc genomics, protein structure initiative;
HET: AMP; 1.88A {Chlorobaculum tepidum}
Length = 313
Score = 69.9 bits (171), Expect = 2e-14
Identities = 44/241 (18%), Positives = 79/241 (32%), Gaps = 36/241 (14%)
Query: 1 MGAVGKD---NYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAA 56
+G VG D + D+L +K + + Q + T A + R +
Sbjct: 49 VGVVGSDFGKEHFDLLHAK----NIDTRGIQVIEDGKTFRWAGRYHYDMNTRDTLDT--Q 102
Query: 57 ANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYLHHRF 116
N+F HVP+ + + + PE L+V + + ++
Sbjct: 103 LNVFAEFDPHVPQYYRDSKFV-------CLGNIDPELQLKVLDQIDDPKLVVCDTMNFWI 155
Query: 117 IYLVLIDFEALAFA---------KQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGD 167
+ LA + +L A I + II +G+
Sbjct: 156 EGKPEELKKVLARVDVFIVNDSEARLLSGDPNLVKTARIIRE------MGPKTLIIKKGE 209
Query: 168 KPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVC--IECGVWA 225
+L + P P ES+ D GAGD+F GGF+ L + S + ++
Sbjct: 210 HGALLFTDNGIFAAPA--FPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEMRKAVLYG 267
Query: 226 A 226
+
Sbjct: 268 S 268
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding,
nucleoside B transferase; HET: MZR ADP; 1.55A
{Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A*
3b1r_A*
Length = 326
Score = 70.0 bits (172), Expect = 3e-14
Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 50/254 (19%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAANL 59
MG +G + L+ + GL +Y + + A++ TD + + A
Sbjct: 67 MGTLGAVDAQPYLDRMDAL-GLSREYVRVLPDTYSAQ-AMITTDLDNNQITAFHPGAMMQ 124
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINY-------- 111
+H ++ KL V P+ + + + +
Sbjct: 125 SHVNHAGEAKDIKL-------------AIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGL 171
Query: 112 ------LHHRFI----YLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERIT 161
R I Y+ + D+EA + + +++ + R +
Sbjct: 172 PLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIAS--------------RVQAL 217
Query: 162 IITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIEC 221
IIT+G+ + T + P + AE V+D G GD+F GG L + G +
Sbjct: 218 IITRGEHGATIRHRDGTEQIPA--VRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRL 275
Query: 222 GVWAAQHIIQVSGC 235
I G
Sbjct: 276 ASLMGALKIAHQGP 289
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 69.6 bits (171), Expect = 4e-14
Identities = 52/271 (19%), Positives = 80/271 (29%), Gaps = 55/271 (20%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLV--ANLAAA 57
+G +G D+ L + G+ V + + + V +T +G+ RS + A
Sbjct: 70 IGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGE-RSFTYLVHPGAD 128
Query: 58 NLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP--ESILEVAKVALSCTIR---NINY- 111
+P L + E++Y S LT P E+ LE A+ ++N
Sbjct: 129 TYVSPQDL------PPFRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLR 182
Query: 112 ------------LHHRFIY---LVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPN 156
L R + + + L L
Sbjct: 183 SKMWGNTDEIPELIARSAALASICKVSADELCQL----SGASHWQDARYY---LRDLGC- 234
Query: 157 RERITIITQGDKPIILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGE 213
TII+ G +L V VVDT GAGD+FVGG L L +
Sbjct: 235 --DTTIISLGADGALLITAEGEFHFPAPRVD------VVDTTGAGDAFVGGLLFTLSRAN 286
Query: 214 PLSV-----CIECGVWAAQHIIQVSGCTLGL 239
I + G L
Sbjct: 287 CWDHALLAEAISNANACGAMAVTAKGAMTAL 317
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase,
structural genomics, joint CE structural genomics, JCSG;
HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Length = 306
Score = 68.0 bits (167), Expect = 9e-14
Identities = 41/241 (17%), Positives = 73/241 (30%), Gaps = 48/241 (19%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
AVG + + L S G+ + + +G + TD + + A +
Sbjct: 76 YSAVGMKTHREYLAMIESM-GINTGHVEKFEDESGPICYIATDGK-KQVSFMHQGAMAAW 133
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYLHHRFIY-- 118
P + + + + + +A S + I+
Sbjct: 134 APQ---LADEYEYVH---------------FSTGPNYLDMAKSIRSK--------IIFDP 167
Query: 119 ---LVLIDFEAL-AFAKQQNF----QTEDLHAIALKISNLPKQNPNRERITIITQGDKPI 170
+ + L F + E + + + TI+T G++
Sbjct: 168 SQEIHKYSKDELKKFHEISYMSIFNDHE-----YRVFREMTGLSS-PKVTTIVTNGERGS 221
Query: 171 ILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHII 230
L +GK +FP S DT GAGDSF G L + + G A H+I
Sbjct: 222 SLFMDGKKYDFP----AIPSSGDTVGAGDSFRAGLYLALYNRRSIEKGMIYGTIIAHHVI 277
Query: 231 Q 231
Sbjct: 278 D 278
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics,
transferase, riken structural genomics/proteomics
initiative, RSGI; HET: KDG ADP; 2.1A {Thermus
thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Length = 309
Score = 66.4 bits (163), Expect = 4e-13
Identities = 47/266 (17%), Positives = 85/266 (31%), Gaps = 54/266 (20%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLV---ANLAAA 57
+G VG+D ++E + G+ + + TG G + A +
Sbjct: 53 VGRVGEDELGAMVEERLRAEGVDLTHFRRAPGFTGLYLREYLPLG-QGRVFYYRKGSAGS 111
Query: 58 NLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESI------LEVAKVALSCTIRNINY 111
L P + ++ + ++SG +SPE+ +E AK ++NY
Sbjct: 112 AL-APGAF----DPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNY 166
Query: 112 -------------LHH--RFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPN 156
L + L+ + E F + AL
Sbjct: 167 RQTLWSPEEARGFLERALPGVDLLFLSEEEAELL----FGRVEEALRALSA--------- 213
Query: 157 RERITIITQGDKPIILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGE 213
++ +G K +G+ E F V+ VD GAGD+F G+L+ + G
Sbjct: 214 --PEVVLKRGAKGAWAFVDGRRVEGSAFAVE------AVDPVGAGDAFAAGYLAGAVWGL 265
Query: 214 PLSVCIECGVWAAQHIIQVSGCTLGL 239
P+ + + G G
Sbjct: 266 PVEERLRLANLLGASVAASRGDHEGA 291
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
transferase; HET: RIB ADP; 1.84A {Escherichia coli}
SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Length = 309
Score = 65.6 bits (161), Expect = 7e-13
Identities = 52/243 (21%), Positives = 84/243 (34%), Gaps = 38/243 (15%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAAN- 58
+ G D+ + + + + + + E TG + + G+ + A AN
Sbjct: 61 IACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIH--AGANA 118
Query: 59 LFTPDHLHVPENNKLIQNAEYYYVSGFFLT---VSPESILEVAKVALSCTIRNI------ 109
+P V + I NA L ES++ AK+A
Sbjct: 119 ALSPAL--VEAQRERIANASA------LLMQLESPLESVMAAAKIAHQNKTIVALNPAPA 170
Query: 110 NYLHHRFIYLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITII 163
L L L+D EA + ED A + + +I
Sbjct: 171 RELPDEL--LALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRT------VLI 222
Query: 164 TQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGV 223
T G + + S NG+ P R+ A VDT AGD+F G ++ L++ +PL I
Sbjct: 223 TLGSRGVWASVNGEGQRVPGFRVQA---VDTIAAGDTFNGALITALLEEKPLPEAIRFAH 279
Query: 224 WAA 226
AA
Sbjct: 280 AAA 282
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB
family, PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 1.90A {Pyrococcus horikoshii} PDB:
3ih0_A* 3gbu_A*
Length = 313
Score = 64.9 bits (159), Expect = 1e-12
Identities = 48/266 (18%), Positives = 87/266 (32%), Gaps = 64/266 (24%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAANL 59
+ VG D + + L + S+ + + + + TG V + + L + A
Sbjct: 53 ISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKGASPSFLLYDD-VAYFN 111
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP--ESILEVAKVALSCTIRN-------IN 110
T + + N +++ A+ L +P E++++V K + +N
Sbjct: 112 MTLNDI----NWDIVEEAKIVNFGSVILARNPSRETVMKVIKKI-----KGSSLIAFDVN 162
Query: 111 YLHHRFIYLVLI-DFEALAFAKQQNFQTEDLHAIA-----LKIS----------NLPKQN 154
R L L E + L +K S + +
Sbjct: 163 L---R---LDLWRGQEEEM--------IKVLEESIKLADIVKASEEEVLYLENQGVEVKG 208
Query: 155 PNRERITIITQGDKPIILSQNGKTTE---FPVQRLPAESVVDTNGAGDSFVGGFLSQL-- 209
+T IT G K L +N + + V +DT GAGD+F+ L +
Sbjct: 209 S---MLTAITLGPKGCRLIKNETVVDVPSYNVN------PLDTTGAGDAFMAALLVGILK 259
Query: 210 IKGEPLSVCIECGVWAAQHIIQVSGC 235
+KG L + A Q G
Sbjct: 260 LKGLDLLKLGKFANLVAALSTQKRGA 285
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 63.8 bits (156), Expect = 4e-12
Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 46/259 (17%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKAR-SLVANLAAAN 58
+G +G D + D L +E G+V T T V + +G+ S AA
Sbjct: 56 VGMLGSDMFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADL 115
Query: 59 LFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP-----ESILEVAKVALSCTIRNINYLH 113
LF +H + +A ++ +T + + A+ A + ++N+
Sbjct: 116 LFRVEHF----QDASFSDALIFHACSNSMTDADIAEVTFEGMRRAQAAGAIVSFDLNF-- 169
Query: 114 HRFIYLVLIDFEALAFAKQQNF--------------------QTEDLHAIALKISNLPKQ 153
R +L ++ D +A+ + L +
Sbjct: 170 -R---PMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQ---LWQG 222
Query: 154 NPNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGE 213
++ ++T P+ E P R+ V D+N AGD+FVGG L +
Sbjct: 223 RA---QLLLVTDAAGPVHWYTRTAGGEVPTFRVQ---VQDSNAAGDAFVGGMLYTFAQQF 276
Query: 214 PLSVCIECGVWAAQHIIQV 232
+ + + I+
Sbjct: 277 DDAAALIDFCHDPESIVST 295
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Length = 304
Score = 62.9 bits (154), Expect = 7e-12
Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 39/244 (15%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAAN- 58
+ +G D +D + + Y TG + + G+ V AN
Sbjct: 60 ITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVY--GGANM 117
Query: 59 LFTPDHLHVPENNKLIQNAEYYYVSGFFLT---VSPESILEVAKVALSCTIRNI------ 109
TP+ V I NA++ + V +I+ ++A + + +
Sbjct: 118 TMTPED--VINAKDAIINADF------VVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPA 169
Query: 110 NYLHHRFIYLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITII 163
L + L LID EA + + + + A ++ + +I
Sbjct: 170 KALPNEL--LSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKT------VLI 221
Query: 164 TQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKG-EPLSVCIECG 222
T G + + ++ ++ A +DT AGD+F+G F+S+L K + L+ I+ G
Sbjct: 222 TLGKQGTYFATKNQSQHIEAYKVNA---IDTTAAGDTFIGAFVSRLNKSQDNLADAIDFG 278
Query: 223 VWAA 226
A+
Sbjct: 279 NKAS 282
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc
initiative, PSI, joint center for structural genomics,
TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Length = 311
Score = 62.5 bits (153), Expect = 1e-11
Identities = 51/239 (21%), Positives = 88/239 (36%), Gaps = 38/239 (15%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAAN-L 59
+ +G D+YSD+L + G + + PTG + + G+ R ++ AN
Sbjct: 72 VTCIGNDDYSDLLIENYEKLG--ITGYIRVSLPTGRAFIEVDKTGQNRIIIF--PGANAE 127
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLT---VSPESILEVAKVALSCTIRN---INYLH 113
+ + + ++ L + E+ LE AK I + ++
Sbjct: 128 LKKELIDWN----TLSESDI------LLLQNEIPFETTLECAKRFNGIVIFDPAPAQGIN 177
Query: 114 HRFIYLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGD 167
+D+ E A +K + + A K L +N I+ GD
Sbjct: 178 EEI--FQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKN------VIVKLGD 229
Query: 168 KPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAA 226
K ++L + FP ++ A VDT AGD F G F L +G+ + G AA
Sbjct: 230 KGVLLVNKNEKKHFPTFKVKA---VDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAA 285
>2fv7_A Ribokinase; structural genomics, structural genomics consort
transferase; HET: ADP; 2.10A {Homo sapiens} SCOP:
c.72.1.1
Length = 331
Score = 59.9 bits (146), Expect = 9e-11
Identities = 52/248 (20%), Positives = 87/248 (35%), Gaps = 43/248 (17%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAAN- 58
+ VGKD++ + + + ++ TGT ++++ + G+ ++ A AN
Sbjct: 81 VCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIV--AGANL 138
Query: 59 LFTPDHLHVPENNKLIQNAEYYYVSGFFLT---VSPESILEVAKVALSC---TIRN---- 108
L + + +I A+ + ++P + LE +A T+ N
Sbjct: 139 LLNTED--LRAAANVISRAK------VMVCQLEITPATSLEALTMARRSGVKTLFNPAPA 190
Query: 109 INYLHHRFIYLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITI 162
I L +F L D EA D AL + Q I
Sbjct: 191 IADLDPQF--YTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQV------VI 242
Query: 163 ITQGDKPIILSQNGKTTEFPVQRLPAESV--VDTNGAGDSFVGGFLSQL--IKGEPLSVC 218
IT G + ++ + + P E V VDT GAGDSFVG L L
Sbjct: 243 ITLGAEGCVVLSQTEPEPKHI---PTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDM 299
Query: 219 IECGVWAA 226
+ + A
Sbjct: 300 LNRSNFIA 307
>3ktn_A Carbohydrate kinase, PFKB family; PFKB
family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II,
NYSGXRC,, structural genomics; 2.26A {Enterococcus
faecalis}
Length = 346
Score = 57.4 bits (139), Expect = 6e-10
Identities = 30/275 (10%), Positives = 76/275 (27%), Gaps = 50/275 (18%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANL----AA 56
+ + + + ++ + G+ ++ + G+ G + V +A
Sbjct: 54 ITKLPANRLGEAGKAALRKLGISDQWVGEKGDHIGS-FFAEMGYGIRPTQVTYQNRHQSA 112
Query: 57 ANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP---ESILEVAKVA------LSCTIR 107
+ + + ++ G L+++ ++ L +A+ A +
Sbjct: 113 FGISEAKDYDFEA---FLAEVDMVHICGISLSLTEKTRDAALILAQKAHAYQKKVCF--- 166
Query: 108 NINY----------LHHRFIYLVLIDF---------EALAFAKQQNFQTEDLHAIALKIS 148
+ NY L R Y ++ + + + + + A ++
Sbjct: 167 DFNYRPSLNTANSALFMRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELI 226
Query: 149 NLPKQNPNRERITIITQGDKPI-------ILSQNGKTTEFPVQRLPAESVVDTNGAGDSF 201
N E T L + + + L +D GAGD++
Sbjct: 227 QRFMSQYNLEWF-AGTTRSHSQNQNYLSGYLYTQNEYQQSEKRPLL---NLDRIGAGDAY 282
Query: 202 VGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCT 236
G L + L + + G
Sbjct: 283 AAGILYGYSQNWSLEKAVTFATVNGVLAHTIQGDI 317
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3-
deoxygluconokinase, PFKB family carbohy kinase,
structural genomics; 2.05A {Thermotoga maritima} SCOP:
c.72.1.1
Length = 351
Score = 56.2 bits (136), Expect = 1e-09
Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 54/276 (19%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLV----ANLAA 56
+ + + D +FG+ Y G L + S V A+ A
Sbjct: 64 VTKLPNNPLGDAAAGHLRKFGVKTDYIARGGNRIGI-YFLEIGASQRPSKVVYDRAHSAI 122
Query: 57 ANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVSP---ESILEVAKVA------LSCTIR 107
+ + + ++ A +++ SG + + + KVA +SC
Sbjct: 123 SEA-KREDFDWEK---ILDGARWFHFSGITPPLGKELPLILEDALKVANEKGVTVSC--- 175
Query: 108 NINY-------------LHH--RFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPK 152
++NY + ++ +++ + E + + + DL L K
Sbjct: 176 DLNYRARLWTKEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAK 235
Query: 153 ------QNPNRERITIITQGDKPI--------ILSQNGKTTEFPVQRLPAESVVDTNGAG 198
+ N + + IT + ++ +NG+ + +VD GAG
Sbjct: 236 IAEEVTRKYNFKTV-GITLRESISATVNYWSVMVFENGQPHFSNRYEIH---IVDRVGAG 291
Query: 199 DSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSG 234
DSF G + + G E A+ + G
Sbjct: 292 DSFAGALIYGSLMGFDSQKKAEFAAAASCLKHTIPG 327
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose
metabolic process,ATP ribokinase, PFKB
family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A
{Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Length = 299
Score = 52.9 bits (128), Expect = 1e-08
Identities = 44/250 (17%), Positives = 76/250 (30%), Gaps = 69/250 (27%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAAN-L 59
+ A G D+ + + L++ H + + T +L + +G + AA
Sbjct: 59 IAATGNDSNGAWIRQQIKNEPLMLLPDGHFNQHSDTSIILNSADGDNAIITT--TAAADT 116
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLT---VSPESILEVAKVALSCTIRNINYLHHRF 116
F+ D + + + L S + + + A S
Sbjct: 117 FSLDE--MIPHMADAVAGD------ILLQQGNFSLDKTRALFQYARS--------RGMTT 160
Query: 117 IY------------LVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRE 158
++ LID EA E L +K
Sbjct: 161 VFNPSPVNPDFCHLWPLIDIAVVNESEA-----------ELLQPYGVKT----------- 198
Query: 159 RITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKG--EPLS 216
+ITQG L Q G+ P A +DT GAGD+F+ L+ + P +
Sbjct: 199 --LVITQGAAGAWLVQEGQRQFCPAVPAEA---LDTTGAGDTFLAVMLASALLRGVAPDA 253
Query: 217 VCIECGVWAA 226
+ + AA
Sbjct: 254 LALAHASRAA 263
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase,
transferase; HET: RIB ADP; 1.98A {Mycobacterium
tuberculosis} PDB: 3go7_A*
Length = 310
Score = 51.4 bits (124), Expect = 5e-08
Identities = 42/242 (17%), Positives = 66/242 (27%), Gaps = 58/242 (23%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFT 61
GA G D + L + + + P+GT +++ + + LVA AN
Sbjct: 77 GAFGDDPAAAQLRAHLRANAVGLDRTVTVPGPSGTAIIVVDASAENTVLVA--PGANA-- 132
Query: 62 PDHLHVPENNKLIQNAEYYYVSGFFLT---VSPESILEVAKVALSCTIRNI-N---YLHH 114
H+ + N LT + + L A+ A S + N
Sbjct: 133 ----HLTPVPSAVANC------DVLLTQLEIPVATALAAARAAQSADAVVMVNASPAGQD 182
Query: 115 RFI---YLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQ 165
R + D EA D + +IT
Sbjct: 183 RSSLQDLAAIADVVIANEHEA-----------NDWPSPPTHF--------------VITL 217
Query: 166 GDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWA 225
G + E P + VDT GAGD F G + + +
Sbjct: 218 GVRGARYVGADGVFEVPAPTVTP---VDTAGAGDVFAGVLAANWPRNPGSPAERLRALRR 274
Query: 226 AQ 227
A
Sbjct: 275 AC 276
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
structura genomics, PSI-2, protein structu initiative;
HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Length = 343
Score = 50.3 bits (121), Expect = 1e-07
Identities = 43/243 (17%), Positives = 61/243 (25%), Gaps = 44/243 (18%)
Query: 2 GAVGKDNYSDILESKASEFGLVVKY-QHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
GAVG D + SE G+ + ++I + G R +V L
Sbjct: 87 GAVGDDETGTRILRDLSESGIDTSGMTVAPGARSALSTIIIDNRG-ERLIVPF-YDHRL- 143
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLT--VSPESILEVAKVALSCTIRNI-------NY 111
I L PE L+V VA + I
Sbjct: 144 HEKKRACTPE--DIALF------DAVLVDVRWPELALDVLTVARALGKPAILDGDVAPVE 195
Query: 112 LHHRFIYLVLIDF------EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQ 165
A E + + L + P +T
Sbjct: 196 TLEGL--APAATHIVFSEPAATRLT-----GLETVKDMLPV---LHARYPQT--FIAVTA 243
Query: 166 GDKPIILSQNGKTTEFPVQRLPAESV--VDTNGAGDSFVGGFLSQLIKGEPLSVCIECGV 223
G ++ T V V VDT AGD F G F + +G +
Sbjct: 244 GPAGCWWTEADDPT---VHFQTTMQVEAVDTLAAGDIFHGTFALAMAEGMQSRAAVRLSS 300
Query: 224 WAA 226
AA
Sbjct: 301 VAA 303
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 37.9 bits (89), Expect = 0.002
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
P T GAGDS VG +L + L
Sbjct: 244 PPVKSQSTVGAGDSMVGAMTLKLAENASL 272
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal
5'-phosphate, vitamin B6, phosphorylation, transferase;
2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Length = 283
Score = 38.0 bits (89), Expect = 0.002
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 171 ILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHII 230
++ R+ D G GD F +S L+KG+ L+ + ++
Sbjct: 209 VVVTADSVNVISHSRVKT----DLKGTGDLFCAQLISGLLKGKALTDAVHRAGLRVLEVM 264
Query: 231 QVS 233
+ +
Sbjct: 265 RYT 267
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION,
PSI-II, NYSGXRC, kinase, structural genomics, structure
initiative; HET: ATP; 1.60A {Listeria innocua} PDB:
3hic_A* 3jul_A* 3q1y_A
Length = 320
Score = 37.9 bits (89), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
P + GAGD FVG F++ L P+
Sbjct: 241 PKVQERNDTGAGDVFVGAFIAGLAMNMPI 269
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 37.5 bits (88), Expect = 0.002
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
P+ V ++ GAGDS V GFL+ L +G+ L
Sbjct: 237 PSGEVRNSVGAGDSVVAGFLAALQEGKSL 265
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 37.6 bits (88), Expect = 0.002
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
P + G+GD+ + G L K P
Sbjct: 245 PTIQAKNPVGSGDATIAGLAYGLAKDAPA 273
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 37.6 bits (88), Expect = 0.002
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
P SV++ G+GDS V G S ++ E
Sbjct: 262 PTISVLNPVGSGDSTVAGITSAILNHEND 290
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 37.5 bits (88), Expect = 0.002
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIKGEPL 215
P VV+T G+GDS V G ++ + G +
Sbjct: 237 PQGKVVNTVGSGDSTVAGMVAGIASGLSI 265
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.006
Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 77/195 (39%)
Query: 48 RSLVANLAAANLFTPDHLHVPENNKLIQNAEYYYVS----GFFLTVS-----------PE 92
R L L+ +L L VP + ++ S F + P
Sbjct: 7 RPLT--LSHGSLEH--VLLVPTAS-------FFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 93 SILE-VAKVALSCTIRNINYLHH--------------RFIYLVLIDFEALAFAKQQNF-Q 136
+ E V K +L + + + L L +FE + +
Sbjct: 56 TPAELVGK-----------FLGYVSSLVEPSKVGQFDQVLNLCLTEFE-------NCYLE 97
Query: 137 TEDLHAIALKISNLPKQNPNRERITIITQGDKPIILS--QNGKTTEFPVQRLPAESVVDT 194
D+HA+A K+ T++ K +I + + P + ++
Sbjct: 98 GNDIHALAAKL-------LQENDTTLVKT--KELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 195 NGAGDS-----FVGG 204
G G++ F GG
Sbjct: 149 VGEGNAQLVAIF-GG 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 38/276 (13%), Positives = 80/276 (28%), Gaps = 93/276 (33%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+ V + NY +F L+ + +P+ + I R + N +F
Sbjct: 83 VEEVLRINY---------KF-LMSPIKTEQRQPSMMTRMYIE----QRDRLYN--DNQVF 126
Query: 61 TPDHLHVPE-----NNKL--IQNAEYYYVSG---------------------------FF 86
++ + L ++ A+ + G F+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 87 LTV----SPESILEVAKVALSCTIRNINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHA 142
L + SPE++LE + L ++ ID + + + +H+
Sbjct: 187 LNLKNCNSPETVLE-----------MLQKLLYQ------IDPNWTSRSDHSSNIKLRIHS 229
Query: 143 IALKISNLPKQNP------------NRERI--------TIITQGDKPIILSQNGKTTEFP 182
I ++ L K P N + ++T K + + TT
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 183 VQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVC 218
+ ++ T S + +L + P V
Sbjct: 290 SLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVL 323
Score = 35.6 bits (81), Expect = 0.014
Identities = 29/199 (14%), Positives = 49/199 (24%), Gaps = 55/199 (27%)
Query: 1 MGAVGK-----DNYSDILESKASEFG---LVVKYQHHDTEPTGTCAVLITDNGKARSLVA 52
+ GK D +F L +K + VL +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET------VLEMLQKLLYQIDP 211
Query: 53 NLAAANLFTPDHLHVPENNKLIQNAEYYYVSGFFLTVS-PESIL--------EVAKV-AL 102
N + DH N KL ++ + + +L + L
Sbjct: 212 NWTSR----SDH---SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 103 SCTI----RN---INYL---HHRFIYLV-----LIDFEALA-FAKQQNFQTEDLHAIALK 146
SC I R ++L I L L E + K + + +DL L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 147 ISNLP--------KQNPNR 157
+ +
Sbjct: 325 TNPRRLSIIAESIRDGLAT 343
Score = 27.9 bits (61), Expect = 3.5
Identities = 20/116 (17%), Positives = 31/116 (26%), Gaps = 43/116 (37%)
Query: 48 RSLVANLAAANLFTPDHLHVPEN------------------NKLI-------QNAEYYYV 82
R + L+ +F P H+P NKL Q E
Sbjct: 372 RKMFDRLS---VF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI- 426
Query: 83 SGFFLTVSPESILEVAKVALSCTIRNINYLHHRFI--YLVLIDFEALAFAKQQNFQ 136
SI + + L + N LH + Y + F++ Q
Sbjct: 427 ----------SIPSIY-LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for
structural genomics of infec diseases, csgid,
transferase; HET: MSE; 1.89A {Yersinia pestis} PDB:
1td2_A* 1vi9_A*
Length = 289
Score = 33.5 bits (77), Expect = 0.039
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 170 IILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHI 229
++L + G GD G L L+KGEPL +E A +
Sbjct: 198 MLLVTADDAWHICRPLVDF-GKRQPVGVGDLTSGLLLVNLLKGEPLDKALEHVTAAVYEV 256
Query: 230 IQVS 233
+ +
Sbjct: 257 MLKT 260
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE PXL; 2.00A {Bacteroides
thetaiotaomicron} PDB: 3mbj_A*
Length = 291
Score = 33.4 bits (77), Expect = 0.050
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 170 IILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHI 229
Q + + LPA G GD+F L++G+ L + ++
Sbjct: 200 AYNRQGNRYWKVTCPYLPA----HYPGTGDTFTSVITGSLMQGDSLPMALDRATQFILQG 255
Query: 230 IQVS 233
I+ +
Sbjct: 256 IRAT 259
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 33.3 bits (77), Expect = 0.052
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 187 PAESVVDTNGAGDSFVGGFLSQLIK 211
GAGD++V G + IK
Sbjct: 261 EEIDTSHLLGAGDAYVAGMVYYFIK 285
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.7 bits (74), Expect = 0.063
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 203 GGFLSQLI----KGEPLSVCIECGVWAAQHII 230
+ +++ +G+ VC CG+ + ++
Sbjct: 28 KVYPPKIVERFSEGD--VVCALCGLVLSDKLV 57
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC
AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Length = 455
Score = 31.6 bits (71), Expect = 0.21
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 126 ALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQNGKTTEFPVQR 185
A A A + N + + A + K E++ + I + + P
Sbjct: 369 AAAKAMKGNITSLEEIREATSVPVNEKATQVEEKLRAEYGIKEGIGEVEGYQIAFIPT-- 426
Query: 186 LPAESVVDTNGAGDSF-VGGFLSQL 209
T G GD+ F+ +
Sbjct: 427 KIVAKPKSTVGIGDTISSSAFIGEF 451
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION,
transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A*
3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A*
1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A*
1yhj_A*
Length = 312
Score = 29.0 bits (65), Expect = 1.4
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 149 NLPKQNPNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQ 208
+LP + I + +Q + S + ++++ A G GD F L+
Sbjct: 189 DLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDA----VFVGTGDLFAAMLLAW 244
Query: 209 LIKG-EPLSVCIECGVWAAQHIIQVS 233
K L V E V H++Q +
Sbjct: 245 THKHPNNLKVACEKTVSTLHHVLQRT 270
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 27.5 bits (62), Expect = 3.1
Identities = 6/48 (12%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 127 LAFAKQQ--NFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIIL 172
L FAK + ++ ++ ++ + N + I ++
Sbjct: 71 LTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVI 118
>3drw_A ADP-specific phosphofructokinase; AMP, cytoplasm, glycolysis,
magnesium, metal-binding, transferase, structural
genomics, PSI-2; HET: AMP; 1.90A {Pyrococcus horikoshii}
PDB: 1u2x_A
Length = 474
Score = 27.3 bits (60), Expect = 4.5
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 126 ALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQNGKTTEFPVQR 185
A A A + + D + + LK+ N E + + + K + + K P
Sbjct: 388 AAARASLGDIRGPDDYKVGLKVP----FNERSEYVKLRFEEAKSRLRMREYKVVVIPT-- 441
Query: 186 LPAESVVDTNGAGDSFV-GGFLSQL 209
++ V T G GD+ G FL+ L
Sbjct: 442 RLVQNPVLTVGLGDTISAGAFLTYL 466
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA
complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP:
d.79.3.1
Length = 119
Score = 26.3 bits (58), Expect = 4.8
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 33 PTGTCAVLITDNGKARSLVANLAAA 57
+ I + G+ R + +L
Sbjct: 89 EVPCASAAIINEGELRKELGSLVEK 113
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner
membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces
cerevisiae}
Length = 160
Score = 26.7 bits (59), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEV 97
P + V E + ++ +++SG F TV P+S L V
Sbjct: 75 LPGVVEVMEGSN----SKKFFISGGFATVQPDSQLCV 107
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural
genomics, protein structure initiative; NMR
{Staphylococcus aureus}
Length = 80
Score = 25.2 bits (55), Expect = 6.4
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 66 HVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYLHH 114
P + Q Y + ++E A+S + N+ + HH
Sbjct: 34 AFPRLEERHQVIRAY----VMSNYTDHQLIETTNRAISLYMANLEHHHH 78
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia
coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Length = 316
Score = 26.8 bits (60), Expect = 6.4
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 163 ITQGDKPIILSQNGKTTEFPVQRLPAE 189
I GDK +++ +G+ + + R+P
Sbjct: 204 IKDGDKRVLVV-DGEPVPYCLARIPQG 229
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F*
1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F*
1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F*
1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Length = 120
Score = 25.5 bits (56), Expect = 8.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 33 PTGTCAVLITDNGKARSLVANLAAA 57
G+ A +TD G+A + V ++A
Sbjct: 91 EVGSAAAAVTDAGEADADVEDIADK 115
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit,
structural genomi protein structure initiative; 2.30A
{Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Length = 193
Score = 26.1 bits (58), Expect = 9.0
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 151 PKQNPNRERITIITQGDKPII 171
+ P R+ I+ +GD I
Sbjct: 64 ESETPGLSRLVIMVKGDDKTI 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,648,048
Number of extensions: 212916
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 80
Length of query: 239
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 148
Effective length of database: 4,160,982
Effective search space: 615825336
Effective search space used: 615825336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)