RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6977
(239 letters)
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 342
Score = 106 bits (265), Expect = 6e-28
Identities = 97/253 (38%), Positives = 136/253 (53%), Gaps = 17/253 (6%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
G +G D + +IL+ KA+E + Y + +PTGTCA IT + ++ AA
Sbjct: 84 FGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACITGDNRSLIAN-LAAANCYK 142
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYLHHRFI--- 117
HL + +N L++ A Y++GFFLTVSPES+L+VA A L FI
Sbjct: 143 KEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQF 202
Query: 118 -------------YLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIIT 164
L + EA FA++Q F+T+D+ IA K LPK N R+RI I T
Sbjct: 203 YKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFT 262
Query: 165 QGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVW 224
QG I++ + T F V + ++DTNGAGD+FVGGFLSQL+ +PL+ CI G +
Sbjct: 263 QGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGGFLSQLVSDKPLTECIRAGHY 322
Query: 225 AAQHIIQVSGCTL 237
AA II+ +GCT
Sbjct: 323 AASIIIRRTGCTF 335
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii
[TaxId: 5811]}
Length = 350
Score = 84.5 bits (207), Expect = 1e-19
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 108 NINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLP-------------KQN 154
+ L L + E AK N + A++ QN
Sbjct: 200 AMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQN 259
Query: 155 PNRERITIITQGDKPIILSQNGKT-----TEFPVQRLPAESVVDTNGAGDSFVGGFLSQL 209
+ ++ ++T+G P+I ++ E V + AE +VDTNGAGD+FVGGFL L
Sbjct: 260 TSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYAL 319
Query: 210 IKGEPLSVCIECGVWAAQHIIQVSGCTL 237
+G+ + CI CG AQ +IQ G +L
Sbjct: 320 SQGKTVKQCIMCGNACAQDVIQHVGFSL 347
>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase
{Thermotoga maritima, TM0067 [TaxId: 2336]}
Length = 333
Score = 73.2 bits (178), Expect = 7e-16
Identities = 34/270 (12%), Positives = 71/270 (26%), Gaps = 38/270 (14%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+ + + D +FG+ Y G + I + + +V + A + +
Sbjct: 55 VTKLPNNPLGDAAAGHLRKFGVKTDYIARGGNRIGIYFLEIGASQRPSKVVYDRAHSAIS 114
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNI----------- 109
K++ A +++ SG + E L + + +
Sbjct: 115 EAKREDFD-WEKILDGARWFHFSGITPPLGKELPLILEDALKVANEKGVTVSCDLNYRAR 173
Query: 110 -----------------------NYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALK 146
N + + ++ L K + +
Sbjct: 174 LWTKEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAEEVTR 233
Query: 147 ISNLPKQNPNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFL 206
N T +++ +NG+ +VD GAGDSF G +
Sbjct: 234 KYNFKTVGITLRESISATVNYWSVMVFENGQPHFSNR---YEIHIVDRVGAGDSFAGALI 290
Query: 207 SQLIKGEPLSVCIECGVWAAQHIIQVSGCT 236
+ G E A+ + G
Sbjct: 291 YGSLMGFDSQKKAEFAAAASCLKHTIPGDF 320
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga
maritima [TaxId: 2336]}
Length = 288
Score = 66.9 bits (162), Expect = 8e-14
Identities = 25/240 (10%), Positives = 60/240 (25%), Gaps = 19/240 (7%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+ +++ S + + V+ + T + + R AA
Sbjct: 51 ITKCTREDVSKFSFLRDNG----VEVVFLKSPRTTSIENRYGSDPDTRESFLISAADPFT 106
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAK-----VALSCTIRNINYLHHR 115
D + E +++ + PE ++ V + ++ + +
Sbjct: 107 ESDLAFI--------EGEAVHINPLWYGEFPEDLIPVLRRKVMFLSADAQGFVRVPENEK 158
Query: 116 FIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQN 175
+Y E L +N +++ R
Sbjct: 159 LVYRDWEMKEKYLKYLDLFKVDSREA-ETLTGTNDLRESCRIIRSFGAKIILATHASGVI 217
Query: 176 GKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLI-KGEPLSVCIECGVWAAQHIIQVSG 234
F + S+ G GD+ FL + K + + ++ G
Sbjct: 218 VFDGNFYEASFRSWSLEGRTGRGDTCTAAFLVGFVFKKMSIEKATKFAAAVTSVKMRHPG 277
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB
{Bacillus halodurans [TaxId: 86665]}
Length = 306
Score = 65.5 bits (158), Expect = 3e-13
Identities = 32/235 (13%), Positives = 64/235 (27%), Gaps = 7/235 (2%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+G +G + + + E + + N A +
Sbjct: 56 LGFLGGFTGAYVRNALEKE------EIGLSFIEVEGDTRINVKIKGKQETELNGTAPLIK 109
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILE-VAKVALSCTIRNINYLHHRFIYL 119
+ E ++ + ++G P++I + ++A ++
Sbjct: 110 KEHVQALLEQLTELEKGDVLVLAGSVPQAMPQTIYRSMTQIAKERGAFVAVDTSGEALHE 169
Query: 120 VLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQNGKTT 179
VL + IA +P +
Sbjct: 170 VLAAKPSFIKPNHHELSELVSKPIASIEDAIPHVQRLIGEGIESILVSFAGDGALFASAE 229
Query: 180 EFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSG 234
+P+ V ++ GAGDS V GFL+ L +G+ L + V A G
Sbjct: 230 GMFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG 284
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC
{Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 62.4 bits (150), Expect = 4e-12
Identities = 33/245 (13%), Positives = 68/245 (27%), Gaps = 15/245 (6%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
G +G + + I + T ++ + + L A +
Sbjct: 56 TGVLGGFHGAFIANELKKANIPQAFTSIKE--ETRDSIAILHEGNQTEILEAGPTVSPEE 113
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVA--------KVALSCTIRNINYL 112
+ L + I+ AE +SG P + L T +
Sbjct: 114 ISNFLENFDQL--IKQAEIVTISGSLAKGLPSDFYQELVQKAHAQEVKVLLDTSGDSLRQ 171
Query: 113 HHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIIL 172
+ + + L + Q + +A + L K +I+ G I
Sbjct: 172 VLQGPWKPYLIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIVISLGKDGAIA 231
Query: 173 SQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQV 232
+ + + + G+GD+ + G L K P + ++ G+ A Q
Sbjct: 232 KHHDQFYRVKIP---TIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQE 288
Query: 233 SGCTL 237
Sbjct: 289 RMTGH 293
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus
thermophilus [TaxId: 274]}
Length = 302
Score = 62.1 bits (149), Expect = 5e-12
Identities = 40/242 (16%), Positives = 70/242 (28%), Gaps = 6/242 (2%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+G VG+D ++E + G+ + + TG G+ R +A
Sbjct: 53 VGRVGEDELGAMVEERLRAEGVDLTHFRRAPGFTGLYLREYLPLGQGRVFYYRKGSAGSA 112
Query: 61 TPDHLHVP---ENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYLHHRFI 117
P E + + + +E AK ++NY +
Sbjct: 113 LAPGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWS 172
Query: 118 YLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQNGK 177
F A + A L ++ +G K +G+
Sbjct: 173 PEEARGFLERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGR 232
Query: 178 TTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCTL 237
E A VD GAGD+F G+L+ + G P+ + + G
Sbjct: 233 RVEGSA---FAVEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRGDHE 289
Query: 238 GL 239
G
Sbjct: 290 GA 291
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga
maritima [TaxId: 2336]}
Length = 319
Score = 60.4 bits (145), Expect = 2e-11
Identities = 31/246 (12%), Positives = 67/246 (27%), Gaps = 13/246 (5%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
G VG ++E L+ + T +I + K + + N ++
Sbjct: 59 TGFVGGYMGKILVEELRKISKLITTNFVYVEGETRENIEIIDEKNKTITAI-NFPGPDVT 117
Query: 61 TPDHLHV-PENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYLHHRFIYL 119
D H + + +SG E I + +
Sbjct: 118 DMDVNHFLRRYKMTLSKVDCVVISGSIPPGVNEGICNELVRLARERGVFVFVEQTPRLLE 177
Query: 120 VLIDFEALAFAKQQNFQTE-------DLHAIALKISNLPKQNPNRERITIITQGDKPIIL 172
+ + + + + DL + K + + + I+
Sbjct: 178 RIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEKSQVSVVSYEVKNDIVA 237
Query: 173 SQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIK-GEPLSVCIECGVWAAQHIIQ 231
++ G + + GAGD++V G + IK G + G +A +
Sbjct: 238 TREGVWLIRSKEEID---TSHLLGAGDAYVAGMVYYFIKHGANFLEMAKFGFASALAATR 294
Query: 232 VSGCTL 237
+
Sbjct: 295 RKEKYM 300
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Length = 306
Score = 59.8 bits (143), Expect = 3e-11
Identities = 46/244 (18%), Positives = 76/244 (31%), Gaps = 14/244 (5%)
Query: 1 MGAVG-KDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANL 59
+ G + + A++ + E TG + + G+ + A A L
Sbjct: 58 IACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAAL 117
Query: 60 FTPDHLHVPENNKLIQNAEYYYVSGFFLTVSPESILEVAKVALSCTIRNINYLHHRFIYL 119
E S ++ I K ++ L + L
Sbjct: 118 SPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARELPDELLAL 177
Query: 120 VLIDF----EALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQN 175
V I EA + ED A + R +IT G + + S N
Sbjct: 178 VDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGI------RTVLITLGSRGVWASVN 231
Query: 176 GKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSGC 235
G+ P R+ VDT AGD+F G ++ L++ +PL I AA + G
Sbjct: 232 GEGQRVPGFRVQ---AVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGA 288
Query: 236 TLGL 239
+
Sbjct: 289 QPSV 292
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 308
Score = 56.4 bits (134), Expect = 4e-10
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 191 VVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVWAAQHIIQVSGCTLGL 239
V D GAGD+ G FLS KG + ++ + A+ + + G L
Sbjct: 247 VEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVASTLNVMIRGDQENL 295
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId:
2336]}
Length = 299
Score = 54.3 bits (129), Expect = 2e-09
Identities = 29/214 (13%), Positives = 64/214 (29%), Gaps = 10/214 (4%)
Query: 26 YQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFTPDHLHVPENNKLIQNAEYYYVSGF 85
+ PTG + + G+ ++ A + + + + ++ +
Sbjct: 83 GYIRVSLPTGRAFIEVDKTGQ-NRIIIFPGANAELKKELI----DWNTLSESDILLLQNE 137
Query: 86 FLTVSPESILEVAKVALSCTIRNINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIAL 145
+ + + ++ +D+ + + +
Sbjct: 138 IPFETTLECAKRFNGIVIFDPAPAQGINEEIFQY--LDYLTPNEKEIEALSKDFFGEFLT 195
Query: 146 KISNLPKQNPNRERITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGF 205
K + I+ GDK ++L + FP ++ VDT AGD F G F
Sbjct: 196 VEKAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHFPTFKVK---AVDTTAAGDVFNGAF 252
Query: 206 LSQLIKGEPLSVCIECGVWAAQHIIQVSGCTLGL 239
L +G+ + G AA + G +
Sbjct: 253 AVALSEGKNPEEAVIFGTAAAAISVTRLGAQSSI 286
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 308
Score = 53.3 bits (126), Expect = 4e-09
Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 14/221 (6%)
Query: 26 YQHHDTEPTGTCAVLITDNGKARSLVANLAAANLFTPDHLHVPENNKLIQNAEYYYVSGF 85
TGT ++++ + G+ N+ L+ + V
Sbjct: 84 TYQTKDAATGTASIIVNNEGQ------NIIVIVAGANLLLNTEDLRAAANVISRAKVMVC 137
Query: 86 FLTVSPESILEVAKVALSCTIRNINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIAL 145
L ++P + LE +A ++ + L + + E L + +
Sbjct: 138 QLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTV 197
Query: 146 KISNLPKQNPNRE-----RITIITQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDS 200
+ + ++ IIT G + ++ + + + VDT GAGDS
Sbjct: 198 GSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVK-AVDTTGAGDS 256
Query: 201 FVGGFLSQL--IKGEPLSVCIECGVWAAQHIIQVSGCTLGL 239
FVG L L + + A +Q +G
Sbjct: 257 FVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAGTQSSY 297
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 304
Score = 44.0 bits (102), Expect = 5e-06
Identities = 47/252 (18%), Positives = 76/252 (30%), Gaps = 17/252 (6%)
Query: 1 MGAVGKDNYSDILESKASEFGLVVKYQHHDTEPTGTCAVLITDNGKARSLVANLAAANLF 60
+G +G D+ L + G+ V + D + T ++ RS +
Sbjct: 46 IGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADT 105
Query: 61 TPDHLHVPENNKLIQNAEYYYVSGFFLTVSP--ESILEVAKVALSCTIRNINYLHHRFIY 118
+P + E++Y S LT P E+ LE A+ + ++ R
Sbjct: 106 YVSPQDLPP----FRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSKM 161
Query: 119 LVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITIITQGDKPIILSQNGKT 178
D A+ + + + R + G I+S
Sbjct: 162 WGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARYYLRDLGCDTTIISLGADG 221
Query: 179 T------EFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKG-----EPLSVCIECGVWAAQ 227
P VVDT GAGD+FVGG L L + L+ I
Sbjct: 222 ALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISNANACGA 281
Query: 228 HIIQVSGCTLGL 239
+ G L
Sbjct: 282 MAVTAKGAMTAL 293
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId:
562]}
Length = 288
Score = 37.8 bits (87), Expect = 6e-04
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 165 QGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKGEPLSVCIECGVW 224
+ ++L + + + G GD G L +L++G L +E
Sbjct: 191 RDRFEMLLVTADEAWHISRPLVDFG-MRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTA 249
Query: 225 AAQHIIQVS 233
A I+ +
Sbjct: 250 AVYEIMVTT 258
>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId:
9940]}
Length = 309
Score = 35.9 bits (82), Expect = 0.003
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 104 CTIRNINYLHHRFIYLVLIDFEALAFAKQQNFQTEDLHAIALKISNLPKQNPNRERITII 163
I N + I + A + + + SNL + + +
Sbjct: 141 ADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALG 200
Query: 164 TQGDKPIILSQNGKTTEFPVQRLPAESVVDTNGAGDSFVGGFLSQLIKG-EPLSVCIECG 222
+Q + S + + ++ G GD F L+ K L V E
Sbjct: 201 SQRTRAPDGSVVTQRIRMEMHKVD----AVFVGTGDLFAAMLLAWTHKHPNNLKVACEKT 256
Query: 223 VWAAQHIIQVS 233
V A H++Q +
Sbjct: 257 VSAMHHVLQRT 267
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 25.2 bits (55), Expect = 4.7
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 33 PTGTCAVLITDNGKARSLVANL 54
+V I + G A +LV +
Sbjct: 90 EVAAASVAIIEPGDAETLVREI 111
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus,
ba3 type [TaxId: 274]}
Length = 122
Score = 24.7 bits (53), Expect = 7.7
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 29 HDTEPTGTCAVLITDNGKARSLVANLAAANLFTPDHLHVPEN 70
P A + G + V LA A + P+ + VP+
Sbjct: 13 RQEGPWADPAQAVVQTGPNQYTVYVLAFAFGYQPNPIEVPQG 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 866,632
Number of extensions: 38098
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 19
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.4 bits)