BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6978
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 76.3 bits (186), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 1 MADVREXXXXXXXXXXXDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDY 60
M VRE DISA VD FL+KY+LK N+ ILA++KHK+L+++L+K V+Y
Sbjct: 1 MTSVRENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEY 60
Query: 61 IAGGSTQNTLRVAQ 74
AGGSTQN+++VAQ
Sbjct: 61 HAGGSTQNSIKVAQ 74
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase
In Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase
In Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase
In Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 73.2 bits (178), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 18 DISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQ 74
DISA V+ L KY+++ NNAILA+EKH +Y++LI+ +YIAGGS QN+LRVAQ
Sbjct: 35 DISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQ 91
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex
With Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex
With Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex
With Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex
With Tubercidin
Length = 372
Score = 55.8 bits (133), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 1 MADVREXXXXXXXXXXXDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDY 60
M D+ E DI D KYNLK +N +LA+EKH +Y+++ K ++Y
Sbjct: 21 MHDLSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNY 80
Query: 61 IAGGSTQNTLRVAQ 74
IAGG+T NT+++ Q
Sbjct: 81 IAGGATLNTVKMIQ 94
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex
With Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex
With Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex
With 2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex
With 2- Fluoroadenosine
Length = 372
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 1 MADVREXXXXXXXXXXXDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDY 60
M D+ E DI D KYNLK +N +LA+EKH +Y+++ K ++Y
Sbjct: 21 MTDLSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNY 80
Query: 61 IAGGSTQNTLRVAQ 74
IAGG+T NT+++ Q
Sbjct: 81 IAGGATLNTVKMIQ 94
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex
With Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex
With Adenosine In Occluded Loop Conformation
Length = 370
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 18 DISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQ 74
DI D KYNLK +N +LA+EKH +Y+++ K ++YIAGG+T NT+++ Q
Sbjct: 36 DIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQ 92
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 18 DISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQ 74
D+SA V FL KY L+ AIL E+ K +++D+ K NV Y+ GGS N RVAQ
Sbjct: 19 DVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLNVARVAQ 75
>pdb|1RV9|A Chain A, Crystal Structure Of Neisseria Meningitidis Protein
Nmb0706, Pfam Duf152
Length = 259
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 61 IAGGSTQNTLRVAQVKPVQMKSQISLRVQEE 91
+AGG QNT+ +V PV+M + + + +
Sbjct: 141 LAGGVLQNTIAAMKVPPVEMMAYLGPAISAD 171
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 51 DLIKNNNVDYIAGGSTQNTLRV 72
D+++ N+ YI GS NTL V
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHV 231
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 51 DLIKNNNVDYIAGGSTQNTLRV 72
D+++ N+ YI GS NTL V
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHV 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,369,371
Number of Sequences: 62578
Number of extensions: 74113
Number of successful extensions: 156
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 12
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)