Query psy6978
Match_columns 112
No_of_seqs 107 out of 616
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 23:39:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2854|consensus 99.9 6.3E-26 1.4E-30 185.6 9.3 106 2-107 2-113 (343)
2 PRK15074 inosine/guanosine kin 99.8 5.8E-21 1.3E-25 160.1 10.3 101 4-106 31-142 (434)
3 PLN02379 pfkB-type carbohydrat 99.8 1.3E-20 2.9E-25 153.4 10.4 95 6-103 19-130 (367)
4 PLN02813 pfkB-type carbohydrat 99.6 2.8E-15 6E-20 124.9 10.4 99 6-105 69-179 (426)
5 PLN02548 adenosine kinase 99.6 1.1E-14 2.5E-19 114.7 9.2 95 12-106 1-101 (332)
6 PTZ00247 adenosine kinase; Pro 99.5 8.4E-14 1.8E-18 110.9 11.2 102 3-104 2-110 (345)
7 cd01168 adenosine_kinase Adeno 99.1 6.2E-10 1.4E-14 86.8 9.4 93 7-106 2-101 (312)
8 PRK11142 ribokinase; Provision 98.2 5E-06 1.1E-10 64.3 6.8 74 8-104 4-83 (306)
9 cd01942 ribokinase_group_A Rib 98.1 1.2E-05 2.7E-10 61.1 6.8 74 8-105 1-81 (279)
10 PLN02341 pfkB-type carbohydrat 98.0 3.7E-05 8.1E-10 65.0 8.6 85 5-105 71-164 (470)
11 PTZ00292 ribokinase; Provision 97.9 2.9E-05 6.4E-10 61.0 6.7 76 6-104 15-96 (326)
12 PRK09850 pseudouridine kinase; 97.9 2.9E-05 6.4E-10 60.9 6.6 73 8-104 6-84 (313)
13 cd01174 ribokinase Ribokinase 97.9 3.2E-05 7E-10 59.1 6.6 75 8-105 1-81 (292)
14 cd01166 KdgK 2-keto-3-deoxyglu 97.9 1.3E-05 2.9E-10 61.1 4.1 70 8-105 1-76 (294)
15 COG0524 RbsK Sugar kinases, ri 97.9 1.2E-05 2.5E-10 62.6 3.4 74 8-103 1-80 (311)
16 cd01944 YegV_kinase_like YegV- 97.9 4.6E-05 9.9E-10 58.6 6.3 74 8-105 1-80 (289)
17 cd01945 ribokinase_group_B Rib 97.8 6.7E-05 1.5E-09 57.3 6.4 75 8-105 1-81 (284)
18 cd01167 bac_FRK Fructokinases 97.8 4.7E-05 1E-09 58.3 4.9 66 8-104 1-72 (295)
19 cd01939 Ketohexokinase Ketohex 97.7 9.1E-05 2E-09 57.2 6.0 75 8-105 1-81 (290)
20 cd01941 YeiC_kinase_like YeiC- 97.6 0.00011 2.3E-09 56.2 5.4 73 8-104 1-79 (288)
21 cd01172 RfaE_like RfaE encodes 97.6 9.3E-05 2E-09 57.0 5.0 78 8-105 1-84 (304)
22 PRK09813 fructoselysine 6-kina 97.6 8.9E-05 1.9E-09 56.5 4.6 59 8-103 2-66 (260)
23 PF00294 PfkB: pfkB family car 97.6 0.00015 3.2E-09 55.3 5.8 72 8-104 3-80 (301)
24 cd01947 Guanosine_kinase_like 97.6 0.00026 5.7E-09 53.7 6.9 72 8-103 1-78 (265)
25 cd01940 Fructoselysine_kinase_ 97.6 0.00014 3E-09 55.1 5.2 60 8-104 1-66 (264)
26 PRK11316 bifunctional heptose 97.6 0.00025 5.4E-09 59.0 6.8 82 3-104 7-94 (473)
27 cd01943 MAK32 MAK32 kinase. M 97.5 6.7E-05 1.4E-09 60.1 3.1 68 8-105 1-75 (328)
28 cd00287 ribokinase_pfkB_like r 97.5 7.6E-05 1.6E-09 53.5 3.0 57 8-87 1-57 (196)
29 PRK09954 putative kinase; Prov 97.5 0.0002 4.4E-09 57.6 5.6 73 8-104 59-137 (362)
30 PLN02323 probable fructokinase 97.5 0.0001 2.3E-09 58.1 3.7 72 6-104 10-87 (330)
31 cd01937 ribokinase_group_D Rib 97.4 0.00036 7.7E-09 52.7 5.8 60 8-103 1-65 (254)
32 TIGR02198 rfaE_dom_I rfaE bifu 97.4 0.00028 6E-09 54.9 4.8 80 2-103 3-90 (315)
33 PRK09434 aminoimidazole ribosi 97.4 0.00039 8.5E-09 53.9 5.3 63 8-104 4-72 (304)
34 PRK13508 tagatose-6-phosphate 97.3 0.00053 1.1E-08 53.7 5.1 68 13-105 7-79 (309)
35 cd01164 FruK_PfkB_like 1-phosp 97.2 0.00082 1.8E-08 51.8 5.9 72 10-105 4-80 (289)
36 PRK10294 6-phosphofructokinase 97.2 0.00074 1.6E-08 52.8 5.6 72 9-104 4-81 (309)
37 TIGR02152 D_ribokin_bact ribok 97.2 0.0015 3.2E-08 50.2 6.5 70 13-105 1-76 (293)
38 PRK09513 fruK 1-phosphofructok 97.1 0.0014 3.1E-08 51.3 6.2 70 9-103 5-81 (312)
39 TIGR03828 pfkB 1-phosphofructo 96.9 0.0014 3.1E-08 50.4 4.8 70 12-105 5-79 (304)
40 PLN02543 pfkB-type carbohydrat 96.9 0.00094 2E-08 57.6 3.9 80 8-104 127-216 (496)
41 PLN02967 kinase 96.9 0.00092 2E-08 58.9 3.8 83 8-104 198-287 (581)
42 cd01946 ribokinase_group_C Rib 96.9 0.0017 3.6E-08 49.9 4.5 62 8-104 1-67 (277)
43 TIGR03168 1-PFK hexose kinase, 96.8 0.002 4.3E-08 50.0 4.5 67 14-104 7-78 (303)
44 PLN02630 pfkB-type carbohydrat 96.4 0.01 2.2E-07 48.4 6.5 50 5-88 10-59 (335)
45 TIGR01231 lacC tagatose-6-phos 95.8 0.0096 2.1E-07 46.5 3.2 70 14-104 7-78 (309)
46 KOG2855|consensus 92.9 0.16 3.4E-06 42.4 4.3 75 6-103 9-89 (330)
47 KOG2947|consensus 87.0 0.98 2.1E-05 37.1 4.1 73 8-103 6-84 (308)
48 COG1105 FruK Fructose-1-phosph 83.9 0.88 1.9E-05 37.6 2.5 71 14-105 8-80 (310)
49 KOG1546|consensus 51.8 25 0.00054 29.9 4.2 50 26-88 93-145 (362)
50 COG2008 GLY1 Threonine aldolas 49.4 40 0.00086 28.5 5.0 66 21-88 10-81 (342)
51 TIGR00177 molyb_syn molybdenum 43.7 24 0.00051 25.1 2.6 80 7-90 3-101 (144)
52 COG5510 Predicted small secret 42.1 10 0.00022 23.1 0.3 9 65-73 20-28 (44)
53 COG2870 RfaE ADP-heptose synth 40.5 32 0.0007 30.1 3.3 81 6-106 10-96 (467)
54 cd04459 Rho_CSD Rho_CSD: Rho p 39.1 31 0.00067 22.4 2.3 19 22-40 30-48 (68)
55 PRK13810 orotate phosphoribosy 38.0 65 0.0014 24.4 4.3 45 59-103 131-176 (187)
56 TIGR00130 frhD coenzyme F420-r 36.5 20 0.00043 25.9 1.2 14 4-17 2-15 (153)
57 PRK14045 1-aminocyclopropane-1 36.2 54 0.0012 26.4 3.8 38 44-81 57-95 (329)
58 cd06449 ACCD Aminocyclopropane 35.4 52 0.0011 26.0 3.6 38 44-81 39-77 (307)
59 KOG3009|consensus 34.7 58 0.0013 29.2 4.0 50 9-78 343-392 (614)
60 PRK13812 orotate phosphoribosy 33.9 92 0.002 23.2 4.5 45 59-103 116-161 (176)
61 PF08874 DUF1835: Domain of un 33.6 72 0.0016 21.7 3.6 30 59-88 2-31 (124)
62 PRK12390 1-aminocyclopropane-1 32.7 51 0.0011 26.5 3.1 43 44-86 54-98 (337)
63 TIGR01274 ACC_deam 1-aminocycl 31.5 56 0.0012 26.3 3.2 43 44-86 53-97 (337)
64 PRK14135 recX recombination re 29.8 73 0.0016 24.6 3.5 73 19-109 22-94 (263)
65 cd06067 H2MP_MemB-H2evol Endop 29.4 29 0.00063 24.5 1.1 9 9-17 2-10 (136)
66 PRK10081 entericidin B membran 29.0 26 0.00057 21.6 0.7 11 63-73 18-28 (48)
67 PRK10264 hydrogenase 1 maturat 28.6 38 0.00082 25.9 1.6 12 6-17 5-16 (195)
68 PRK01021 lpxB lipid-A-disaccha 27.7 50 0.0011 29.9 2.4 32 7-38 381-414 (608)
69 cd07049 BMC_EutL_repeat1 ethan 27.6 57 0.0012 23.1 2.3 18 19-36 6-23 (103)
70 cd06064 H2MP_F420-Reduc Endope 27.2 33 0.00072 24.5 1.1 9 9-17 2-10 (150)
71 PRK13809 orotate phosphoribosy 27.2 1.2E+02 0.0026 23.3 4.2 45 59-103 127-172 (206)
72 cd00758 MoCF_BD MoCF_BD: molyb 27.2 66 0.0014 22.4 2.6 60 8-67 3-70 (133)
73 COG1366 SpoIIAA Anti-anti-sigm 26.8 1E+02 0.0023 20.7 3.5 38 62-102 61-98 (117)
74 PRK13811 orotate phosphoribosy 26.7 97 0.0021 22.8 3.5 46 59-104 113-159 (170)
75 PRK09810 entericidin A; Provis 26.7 20 0.00044 21.4 -0.1 10 64-73 16-25 (41)
76 PRK14134 recX recombination re 26.6 78 0.0017 25.5 3.2 73 19-109 26-98 (283)
77 cd01494 AAT_I Aspartate aminot 26.2 2E+02 0.0043 19.0 5.7 24 54-77 16-39 (170)
78 COG4803 Predicted membrane pro 26.2 1E+02 0.0022 23.6 3.5 41 11-53 91-137 (170)
79 TIGR00142 hycI hydrogenase mat 26.1 35 0.00077 24.3 1.1 9 9-17 3-11 (146)
80 cd06070 H2MP_like-2 Putative [ 25.7 35 0.00077 24.1 1.0 17 72-89 95-111 (140)
81 cd08175 G1PDH Glycerol-1-phosp 24.4 2.8E+02 0.0061 22.3 6.1 36 45-80 70-106 (348)
82 cd00518 H2MP Hydrogenase speci 24.4 41 0.00089 23.6 1.1 25 66-90 91-115 (139)
83 cd00887 MoeA MoeA family. Memb 24.0 1.7E+02 0.0037 24.3 4.8 72 7-78 171-261 (394)
84 cd06062 H2MP_MemB-H2up Endopep 23.8 42 0.00091 23.9 1.1 17 74-90 102-118 (146)
85 TIGR01275 ACC_deam_rel pyridox 23.8 1.2E+02 0.0025 24.0 3.7 38 44-81 43-81 (311)
86 PRK14690 molybdopterin biosynt 23.6 94 0.002 26.4 3.3 81 8-88 197-304 (419)
87 cd06066 H2MP_NAD-link-bidir En 23.3 44 0.00096 23.6 1.1 36 69-106 90-125 (139)
88 PF07960 CBP4: CBP4; InterPro 22.9 49 0.0011 24.3 1.3 29 7-35 16-44 (128)
89 TIGR00072 hydrog_prot hydrogen 22.6 43 0.00094 23.7 1.0 21 69-89 96-116 (145)
90 cd06063 H2MP_Cyano-H2up This g 22.5 47 0.001 23.7 1.1 9 9-17 3-11 (146)
91 PRK11544 hycI hydrogenase 3 ma 22.2 46 0.001 24.2 1.1 10 7-16 3-12 (156)
92 PF10865 DUF2703: Domain of un 22.1 41 0.0009 24.1 0.7 22 89-110 29-50 (120)
93 PF09413 DUF2007: Domain of un 21.9 40 0.00086 20.6 0.6 21 89-109 12-32 (67)
94 PF03459 TOBE: TOBE domain; I 21.9 1.1E+02 0.0024 18.1 2.6 21 18-38 32-52 (64)
95 COG0680 HyaD Ni,Fe-hydrogenase 21.4 53 0.0011 24.4 1.2 12 6-17 3-14 (160)
96 PRK05632 phosphate acetyltrans 20.8 2.1E+02 0.0046 25.7 5.1 82 22-103 340-425 (684)
97 PRK01215 competence damage-ind 20.7 2.3E+02 0.005 22.6 4.8 73 4-76 3-87 (264)
98 PRK10466 hybD hydrogenase 2 ma 20.6 53 0.0011 24.0 1.1 19 70-88 101-119 (164)
99 PF13167 GTP-bdg_N: GTP-bindin 20.5 58 0.0013 22.4 1.2 27 77-103 32-60 (95)
100 PF04014 Antitoxin-MazE: Antid 20.2 1.4E+02 0.0031 17.1 2.8 21 20-40 8-28 (47)
101 PF01973 MAF_flag10: Protein o 20.2 1E+02 0.0022 22.1 2.5 29 59-88 135-163 (170)
No 1
>KOG2854|consensus
Probab=99.93 E-value=6.3e-26 Score=185.56 Aligned_cols=106 Identities=48% Similarity=0.707 Sum_probs=101.1
Q ss_pred CCCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCC
Q psy6978 2 ADVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMK 81 (112)
Q Consensus 2 ~~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~ 81 (112)
+.+++.-++|+||||||+++.||++||+||||++|++++++++++.+|.++.+..+.++.||||++||+|++||+++.|+
T Consensus 2 ~~~~E~il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~ 81 (343)
T KOG2854|consen 2 SDLPEGILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPG 81 (343)
T ss_pred CCcccceeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCC
Confidence 45667778999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ceeEEee------ccchhhhhhhhccceeeec
Q psy6978 82 SQISLRV------QEEVKPVQMKSQISLRVQE 107 (112)
Q Consensus 82 ~~~~fg~------~~~~~~~~~~~~~~~~~~~ 107 (112)
+++|||. +|.+++..+++|++.+.|.
T Consensus 82 ~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~ 113 (343)
T KOG2854|consen 82 ATVFFGSVGKDKFGELLKSKARAAGVNVHYQV 113 (343)
T ss_pred ceEEEeeccCchHHHHHHHHHHhcCceEEEEe
Confidence 9999999 8999999999999999885
No 2
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.85 E-value=5.8e-21 Score=160.13 Aligned_cols=101 Identities=28% Similarity=0.418 Sum_probs=82.9
Q ss_pred CCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehH-HHHHHHHHHhhCCC-CeeecChHHHHHHHHHHhCCCCCC
Q psy6978 4 VREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADE-KHKDLYEDLIKNNN-VDYIAGGSTQNTLRVAQVKPVQMK 81 (112)
Q Consensus 4 m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de-~~~~L~~eL~~~~~-~~~~~GGSA~NTir~~a~Lg~~~~ 81 (112)
.+.++|+||||||||++++|||+||++||++||+|+|+++ +|.+||++|..... .+..+|||++||+++++||| +.
T Consensus 31 ~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLG--G~ 108 (434)
T PRK15074 31 TSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLA--DD 108 (434)
T ss_pred CCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcC--CC
Confidence 3468899999999999999999999999999999998887 89999999975442 46679999999999999997 23
Q ss_pred ceeEEeec--c-----chhhhhh--hhccceeee
Q psy6978 82 SQISLRVQ--E-----EVKPVQM--KSQISLRVQ 106 (112)
Q Consensus 82 ~~~~fg~~--~-----~~~~~~~--~~~~~~~~~ 106 (112)
.+.|+|.. . .++.-++ +.||..+..
T Consensus 109 ~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v 142 (434)
T PRK15074 109 RSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYL 142 (434)
T ss_pred CeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcce
Confidence 88999883 3 3345454 578886543
No 3
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.84 E-value=1.3e-20 Score=153.36 Aligned_cols=95 Identities=24% Similarity=0.221 Sum_probs=83.5
Q ss_pred cccEEEec-CceeeeEeecCHHHHHHcCCCCCceeeehH-HHHHHHHHHhhCC--------CCeeecChHHHHHHHHHHh
Q psy6978 6 EGLLLGLG-NPLLDISATVDASFLEKYNLKANNAILADE-KHKDLYEDLIKNN--------NVDYIAGGSTQNTLRVAQV 75 (112)
Q Consensus 6 ~~~IvgiG-NpLvDi~a~Vdd~fL~~~gL~kG~m~L~de-~~~~L~~eL~~~~--------~~~~~~GGSA~NTir~~a~ 75 (112)
..+|+||| |||||++++|||+||++|+++||+|+|+++ ++.+||++|..+. +.+..+|||++||++++++
T Consensus 19 ~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~ 98 (367)
T PLN02379 19 PPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLSA 98 (367)
T ss_pred CCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHHH
Confidence 35799999 999999999999999999999999988876 8999999996422 3577899999999999997
Q ss_pred -CCCCCCceeEEee------ccchhhhhhhhccce
Q psy6978 76 -KPVQMKSQISLRV------QEEVKPVQMKSQISL 103 (112)
Q Consensus 76 -Lg~~~~~~~~fg~------~~~~~~~~~~~~~~~ 103 (112)
||. .+.|+|. ++.++.-+++.||..
T Consensus 99 ~LG~---~~~~ig~VG~D~~G~~~~~~L~~~GI~~ 130 (367)
T PLN02379 99 GFGV---STGIIGACGDDEQGKLFVSNMGFSGVDL 130 (367)
T ss_pred hcCC---CEEEEEEeCCChhHHHHHHHHHHcCCCc
Confidence 887 8888887 567888899999973
No 4
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.62 E-value=2.8e-15 Score=124.88 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=86.6
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehH-HHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCC-----C
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADE-KHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPV-----Q 79 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de-~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~-----~ 79 (112)
+++|+++||+++|+.+.||++||++|+++|+++.++++ ++..+++.+. ....+..+||+++|+++++++||. +
T Consensus 69 ~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~-~~~~~~~~GG~~~N~AvalarLG~~~~~~~ 147 (426)
T PLN02813 69 RWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALD-GCSYKASAGGSLSNTLVALARLGSQSAAGP 147 (426)
T ss_pred cceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhh-ccCceEecCcHHHHHHHHHHHhccccccCC
Confidence 57899999999999999999999999999999987765 8999999994 445678899999999999999992 4
Q ss_pred CCceeEEee------ccchhhhhhhhccceee
Q psy6978 80 MKSQISLRV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 80 ~~~~~~fg~------~~~~~~~~~~~~~~~~~ 105 (112)
|.++.|.|. ++.+++.+++.||....
T Consensus 148 ~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~ 179 (426)
T PLN02813 148 ALNVAMAGSVGSDPLGDFYRTKLRRANVHFLS 179 (426)
T ss_pred CCcEEEEEEeCCChHHHHHHHHHHHcCCcccc
Confidence 568899888 67889999999998654
No 5
>PLN02548 adenosine kinase
Probab=99.57 E-value=1.1e-14 Score=114.72 Aligned_cols=95 Identities=46% Similarity=0.691 Sum_probs=81.5
Q ss_pred ecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee---
Q psy6978 12 LGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV--- 88 (112)
Q Consensus 12 iGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~--- 88 (112)
|||||||+.+.+|++||++|+|+||+|+|...++.+...+..........+||++.|+++++.+|+.....+.|.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~ 80 (332)
T PLN02548 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGK 80 (332)
T ss_pred CCCceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcC
Confidence 69999999999999999999999999998877777887776555567888999999999888888665568999987
Q ss_pred ---ccchhhhhhhhccceeee
Q psy6978 89 ---QEEVKPVQMKSQISLRVQ 106 (112)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~ 106 (112)
.+.+++-+.+.||..+..
T Consensus 81 D~~g~~i~~~L~~~gVd~~~~ 101 (332)
T PLN02548 81 DKFGEEMKKCATAAGVNVHYY 101 (332)
T ss_pred ChhHHHHHHHHHHcCCceeee
Confidence 688999999999986643
No 6
>PTZ00247 adenosine kinase; Provisional
Probab=99.53 E-value=8.4e-14 Score=110.92 Aligned_cols=102 Identities=42% Similarity=0.543 Sum_probs=90.3
Q ss_pred CCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCC-
Q psy6978 3 DVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMK- 81 (112)
Q Consensus 3 ~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~- 81 (112)
.|+.++|+++|++.+|+++.+|++||.+++..+|+++++++.+.++..+.......+..+||+++|+++++++||....
T Consensus 2 ~~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~ 81 (345)
T PTZ00247 2 SSAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKG 81 (345)
T ss_pred CCCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCC
Confidence 4667789999999999999999999999999999999999888899999976666788899999999999999975433
Q ss_pred ceeEEee------ccchhhhhhhhcccee
Q psy6978 82 SQISLRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 82 ~~~~fg~------~~~~~~~~~~~~~~~~ 104 (112)
.+.|+|. .+.+++.+++.||..+
T Consensus 82 ~v~~ig~vG~D~~G~~i~~~l~~~GVd~~ 110 (345)
T PTZ00247 82 FVCYVGCVGDDRFAEILKEAAEKDGVEML 110 (345)
T ss_pred cEEEEEEeccchhHHHHHHHHHHcCCeee
Confidence 7889988 6889999999999854
No 7
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.10 E-value=6.2e-10 Score=86.80 Aligned_cols=93 Identities=39% Similarity=0.455 Sum_probs=77.0
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehH-HHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADE-KHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de-~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
.+|+++|++.+|+++.+|...+..+++++|...++++ ....+++. ......+||+++|+++++++||. .+.|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~GG~~~N~A~~la~LG~---~~~~ 74 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAK----LPVKYIAGGSAANTIRGAAALGG---SAAF 74 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHh----cCccccCCCHHHHHHHHHHHhcC---CeEE
Confidence 3599999999999999999999999999999988865 34444332 24456799999999999999998 7888
Q ss_pred Eee------ccchhhhhhhhccceeee
Q psy6978 86 LRV------QEEVKPVQMKSQISLRVQ 106 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~~~ 106 (112)
+|. ++.++.-+++.||.....
T Consensus 75 i~~vG~D~~g~~i~~~l~~~GV~~~~~ 101 (312)
T cd01168 75 IGRVGDDKLGDFLLKDLRAAGVDTRYQ 101 (312)
T ss_pred EEEeccChhHHHHHHHHHHCCCccccc
Confidence 887 578999999999987643
No 8
>PRK11142 ribokinase; Provisional
Probab=98.19 E-value=5e-06 Score=64.26 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=55.8
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++.+|++..++. + ..+|.....+ .....+||++.|+++++++||. .+.|+|
T Consensus 4 ~i~~iG~~~~D~~~~~~~-----~-p~~~~~~~~~--------------~~~~~~GG~~~Nva~~la~lG~---~~~~~~ 60 (306)
T PRK11142 4 KLVVLGSINADHVLNLES-----F-PRPGETLTGR--------------HYQVAFGGKGANQAVAAARLGA---DIAFIA 60 (306)
T ss_pred cEEEECCceeeEEEEeCC-----C-CCCCCeeEec--------------cceecCCCcHHHHHHHHHhcCC---cEEEEE
Confidence 499999999999998864 1 1233222111 2355699999999999999998 677777
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.++.-+++.||..+
T Consensus 61 ~vG~D~~g~~i~~~L~~~gV~~~ 83 (306)
T PRK11142 61 CVGDDSIGESMRQQLAKDGIDTA 83 (306)
T ss_pred EECCChhHHHHHHHHHHcCCChh
Confidence 6 5788999999999854
No 9
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=98.08 E-value=1.2e-05 Score=61.08 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=56.4
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCC-ceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKAN-NAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG-~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
||+++|++.+|+...++. ++.. .... .......+||++.|+++++++||. .+.|+
T Consensus 1 ~v~~iG~~~~D~~~~v~~-------~p~~~~~~~--------------~~~~~~~~GG~~~Nva~~l~~lg~---~~~~~ 56 (279)
T cd01942 1 DVAVVGHLNYDIILKVES-------FPGPFESVL--------------VKDLRREFGGSAGNTAVALAKLGL---SPGLV 56 (279)
T ss_pred CEEEEecceeeeEeeccc-------CCCCCceEe--------------cceeeecCCcHHHHHHHHHHHcCC---CceEE
Confidence 689999999999998763 2222 1111 113356799999999999999988 78888
Q ss_pred ee------ccchhhhhhhhccceee
Q psy6978 87 RV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 87 g~------~~~~~~~~~~~~~~~~~ 105 (112)
|. .+.+++.+++.||..+.
T Consensus 57 ~~vG~D~~g~~i~~~l~~~gi~~~~ 81 (279)
T cd01942 57 AAVGEDFHGRLYLEELREEGVDTSH 81 (279)
T ss_pred EEecCCcchHHHHHHHHHcCCCccc
Confidence 87 56789999999998653
No 10
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=97.99 E-value=3.7e-05 Score=64.98 Aligned_cols=85 Identities=22% Similarity=0.174 Sum_probs=61.9
Q ss_pred CcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehH-HHHHHHHHHhhCC--CCeeecChHHHHHHHHHHhCCCCCC
Q psy6978 5 REGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADE-KHKDLYEDLIKNN--NVDYIAGGSTQNTLRVAQVKPVQMK 81 (112)
Q Consensus 5 ~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de-~~~~L~~eL~~~~--~~~~~~GGSA~NTir~~a~Lg~~~~ 81 (112)
+.++|+++||+.+|+++.||. +++. ++ +....+.++.... .....+|| ++|++++++.||.
T Consensus 71 ~~~~vl~lG~~~vD~i~~V~~-------lP~~-----~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~--- 134 (470)
T PLN02341 71 KEIDVATLGNLCVDIVLPVPE-------LPPP-----SREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGL--- 134 (470)
T ss_pred ccccEEEECCcceeEEEecCC-------CCCC-----CHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCC---
Confidence 345799999999999999965 2332 22 3335555553222 23445777 6899999999998
Q ss_pred ceeEEee------ccchhhhhhhhccceee
Q psy6978 82 SQISLRV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 82 ~~~~fg~------~~~~~~~~~~~~~~~~~ 105 (112)
.+.|+|. ++.+++.+++.||..+.
T Consensus 135 ~v~lig~VG~D~~G~~i~~~L~~~GVd~~~ 164 (470)
T PLN02341 135 RCSTIGHVGDEIYGKFLLDVLAEEGISVVG 164 (470)
T ss_pred CeEEEEEecCcHHHHHHHHHHHHcCCeeeE
Confidence 7888887 68899999999998653
No 11
>PTZ00292 ribokinase; Provisional
Probab=97.94 E-value=2.9e-05 Score=61.02 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=56.9
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
+.+|+++|.+.+|+...+|. +. .+|..... ......+||++.|++++++.||. .+.|
T Consensus 15 ~~~vlviG~~~vD~~~~~~~-----~~-~~~~~~~~--------------~~~~~~~GG~~~NvA~~la~lG~---~~~~ 71 (326)
T PTZ00292 15 EPDVVVVGSSNTDLIGYVDR-----MP-QVGETLHG--------------TSFHKGFGGKGANQAVMASKLGA---KVAM 71 (326)
T ss_pred CCCEEEEccceeeEEEecCC-----CC-CCCCceee--------------cCceeCCCCcHHHHHHHHHHcCC---CeEE
Confidence 35699999999999998864 11 12221111 12355699999999999999998 7777
Q ss_pred Eee------ccchhhhhhhhcccee
Q psy6978 86 LRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~ 104 (112)
+|. .+.+++.+++.||..+
T Consensus 72 is~vG~D~~g~~i~~~l~~~GI~~~ 96 (326)
T PTZ00292 72 VGMVGTDGFGSDTIKNFKRNGVNTS 96 (326)
T ss_pred EEEECCChhHHHHHHHHHHcCCChh
Confidence 776 5788999999999854
No 12
>PRK09850 pseudouridine kinase; Provisional
Probab=97.93 E-value=2.9e-05 Score=60.93 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=54.2
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
.|+++|.+.+|+.+.++. -++.++... . .....+||+++|+++++++||. .+.|+|
T Consensus 6 ~i~~iG~~~vD~~~~~~~------~~~~~~~~~-~--------------~~~~~~GG~~~NvA~~l~~lG~---~~~~ig 61 (313)
T PRK09850 6 YVVIIGSANIDVAGYSHE------SLNYADSNP-G--------------KIKFTPGGVGRNIAQNLALLGN---KAWLLS 61 (313)
T ss_pred cEEEECcEEEeeeccCCC------cCcCCCCCc-e--------------EEEEeCCcHHHHHHHHHHHcCC---CeEEEE
Confidence 589999999999987632 222222211 0 1356699999999999999998 677777
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.+++.++++||..+
T Consensus 62 ~vG~D~~g~~i~~~l~~~gVd~~ 84 (313)
T PRK09850 62 AVGSDFYGQSLLTQTNQSGVYVD 84 (313)
T ss_pred EecCchhHHHHHHHHHHcCCCch
Confidence 6 5678889999999854
No 13
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=97.92 E-value=3.2e-05 Score=59.13 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=55.6
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|...+|++..++. + ...|..... ......+||++.|+++++++||. .+.|+|
T Consensus 1 ~il~iG~~~~D~~~~~~~-----~-~~~~~~~~~--------------~~~~~~~GG~~~NvA~~l~~lG~---~~~~~~ 57 (292)
T cd01174 1 KVVVVGSINVDLVTRVDR-----L-PKPGETVLG--------------SSFETGPGGKGANQAVAAARLGA---RVAMIG 57 (292)
T ss_pred CEEEEeeceeEEEEEecC-----C-CCCCCcEEe--------------ccceecCCCcHHHHHHHHHHcCC---ceEEEE
Confidence 489999999999998764 1 112222111 12356799999999999999998 566666
Q ss_pred e------ccchhhhhhhhccceee
Q psy6978 88 V------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~~ 105 (112)
. .+.+++-+++.||..+.
T Consensus 58 ~vG~D~~g~~i~~~l~~~gi~~~~ 81 (292)
T cd01174 58 AVGDDAFGDELLENLREEGIDVSY 81 (292)
T ss_pred EEcCCccHHHHHHHHHHcCCCceE
Confidence 5 67789999999998765
No 14
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=97.90 E-value=1.3e-05 Score=61.15 Aligned_cols=70 Identities=9% Similarity=0.045 Sum_probs=53.3
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|+..+|+....+. .. .........+||++.|+++++++||. .+.|+|
T Consensus 1 ~i~~iG~~~iD~~~~~~~-----------~~--------------~~~~~~~~~~GG~~~N~a~~la~lg~---~~~~i~ 52 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGG-----------RL--------------EQADSFRKFFGGAEANVAVGLARLGH---RVALVT 52 (294)
T ss_pred CeEEechhheeeecCCCC-----------cc--------------chhhccccccCChHHHHHHHHHhcCC---ceEEEE
Confidence 489999999999876541 10 01113355699999999999999988 788888
Q ss_pred e------ccchhhhhhhhccceee
Q psy6978 88 V------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~~ 105 (112)
. .++++..+++.||..+.
T Consensus 53 ~vG~D~~g~~i~~~l~~~gi~~~~ 76 (294)
T cd01166 53 AVGDDPFGRFILAELRREGVDTSH 76 (294)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCce
Confidence 7 56788889999998654
No 15
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=97.87 E-value=1.2e-05 Score=62.62 Aligned_cols=74 Identities=14% Similarity=0.041 Sum_probs=55.3
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++++|+..+.++.+........+. ..++.+||+++|++++++.||. .+.|+|
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~-------------------~~~~~~GG~~~N~A~~~a~lG~---~~~~~~ 58 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGD-------------------FFKVAGGGKGANVAVALARLGA---KVALIG 58 (311)
T ss_pred CEEEECchhhheehhhccCCCCCccccccc-------------------ceeecCCchHHHHHHHHHHcCC---ceEEEE
Confidence 478999999999998554333222221111 1356799999999999999999 588887
Q ss_pred e------ccchhhhhhhhccce
Q psy6978 88 V------QEEVKPVQMKSQISL 103 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~ 103 (112)
. .+.++..+++.||..
T Consensus 59 ~vG~D~~g~~~~~~l~~~GVd~ 80 (311)
T COG0524 59 AVGDDDFGEFLLEELRKEGVDT 80 (311)
T ss_pred EecCcHHHHHHHHHHHHcCCcc
Confidence 7 678899999999865
No 16
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=97.85 E-value=4.6e-05 Score=58.61 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=54.9
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++++|++..+|+ + .+.|...-. ...+..+|| +.|++++++.||. .+.|+|
T Consensus 1 ~i~~iG~~~~D~i~~~~~-----~-~~~~~~~~~--------------~~~~~~~GG-~~Nva~~l~~lG~---~~~~~~ 56 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDK-----L-PASGGDIEA--------------KSKSYVIGG-GFNVMVAASRLGI---PTVNAG 56 (289)
T ss_pred CeEEEcceeEEEEeeccc-----C-CCCCCcccc--------------ceeeeccCc-HHHHHHHHHHcCC---CeEEEE
Confidence 489999999999999864 1 123332111 123566999 9999999999998 666776
Q ss_pred e------ccchhhhhhhhccceee
Q psy6978 88 V------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~~ 105 (112)
. .+.++.-+.+.||..+.
T Consensus 57 ~vG~D~~g~~i~~~l~~~gi~~~~ 80 (289)
T cd01944 57 PLGNGNWADQIRQAMRDEGIEILL 80 (289)
T ss_pred EecCChHHHHHHHHHHHcCCcccc
Confidence 5 67889999999998764
No 17
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=97.80 E-value=6.7e-05 Score=57.28 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=54.5
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|.+.+|++..++. + . ..|...- .......+||++.|+++++++||. .+.|+|
T Consensus 1 ~i~~iG~~~iD~~~~~~~-~----p-~~~~~~~--------------~~~~~~~~GG~~~NvA~~l~~lG~---~~~~~~ 57 (284)
T cd01945 1 RVLGVGLAVLDLIYLVAS-F----P-GGDGKIV--------------ATDYAVIGGGNAANAAVAVARLGG---QARLIG 57 (284)
T ss_pred CEEEECcceeEEEEEecc-C----C-CCCCeEE--------------EeEEEEecCCHHHHHHHHHHHcCC---CeEEEE
Confidence 489999999999998743 1 1 1122111 113356799999999999999998 677777
Q ss_pred e------ccchhhhhhhhccceee
Q psy6978 88 V------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~~ 105 (112)
. .+.++..+++.||..+.
T Consensus 58 ~vG~D~~g~~i~~~l~~~gI~~~~ 81 (284)
T cd01945 58 VVGDDAIGRLILAELAAEGVDTSF 81 (284)
T ss_pred EecCchHHHHHHHHHHHcCCCccc
Confidence 6 45688999999988654
No 18
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=97.75 E-value=4.7e-05 Score=58.32 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=52.0
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|+..+|+....+.. .......+||++.|+++++++||. .+.+.|
T Consensus 1 ~ilviG~~~~D~~~~~~~~----------------------------~~~~~~~~GG~~~n~a~~l~~lg~---~v~~i~ 49 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA----------------------------PETFTKAPGGAPANVAVALARLGG---KAAFIG 49 (295)
T ss_pred CEEEEcceeEEEecCCCCC----------------------------CccccccCCCcHHHHHHHHHhcCC---CeEEEE
Confidence 4899999999998765431 113356699999999999999987 677777
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.+++-+++.||..+
T Consensus 50 ~vG~D~~g~~i~~~l~~~gi~~~ 72 (295)
T cd01167 50 KVGDDEFGDFLLETLKEAGVDTR 72 (295)
T ss_pred eecCcHHHHHHHHHHHHcCCCch
Confidence 6 5678888999999865
No 19
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=97.71 E-value=9.1e-05 Score=57.22 Aligned_cols=75 Identities=23% Similarity=0.192 Sum_probs=55.7
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|.+.+|+...++.- ..+|+...+. .....+||++.|++.+++.||. .+.|+|
T Consensus 1 ~v~~iG~~~vD~~~~v~~~------p~~~~~~~~~--------------~~~~~~GG~a~NvA~~la~lG~---~~~~~~ 57 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKY------PFEDSDQRTT--------------NGRWQRGGNASNSCTVLRLLGL---SCEFLG 57 (290)
T ss_pred CEEEEeeeeeEEEeeecCC------CCCCcceEee--------------eeeEecCCCHHHHHHHHHHcCC---ceEEEE
Confidence 4899999999999998651 1233322221 1245599999999999999998 677776
Q ss_pred e------ccchhhhhhhhccceee
Q psy6978 88 V------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~~ 105 (112)
. .+.+++-+++.||....
T Consensus 58 ~vG~D~~g~~~~~~l~~~gId~~~ 81 (290)
T cd01939 58 VLSRGPVFESLLDDFQSRGIDISH 81 (290)
T ss_pred eecCCHHHHHHHHHHHHcCCceee
Confidence 6 66889999999997543
No 20
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=97.64 E-value=0.00011 Score=56.19 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=54.3
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
.|+++|...+|++..++. + ..+|.... ......+||+++|.++++++||. .+.++|
T Consensus 1 ~v~~~G~~~~D~~~~~~~-~-----~~~~~~~~---------------~~~~~~~GG~~~Nva~~l~~lG~---~~~~~~ 56 (288)
T cd01941 1 EIVVIGAANIDLRGKVSG-S-----LVPGTSNP---------------GHVKQSPGGVGRNIAENLARLGV---SVALLS 56 (288)
T ss_pred CeEEEEeEEEeeeecccC-c-----cccCCCCC---------------eeEEEccCcHHHHHHHHHHHhCC---CcEEEE
Confidence 378999999999998866 1 11222110 01245699999999999999998 677777
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.+++.+++.||..+
T Consensus 57 ~lG~D~~g~~i~~~L~~~gI~~~ 79 (288)
T cd01941 57 AVGDDSEGESILEESEKAGLNVR 79 (288)
T ss_pred EEecCccHHHHHHHHHHcCCccc
Confidence 6 5678899999999864
No 21
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=97.63 E-value=9.3e-05 Score=57.02 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=53.4
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|+..+|++..++.+-+ - .++...... .......+||+ +|++++++.||. .+.|+|
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~---~-~~~~~~~~~------------~~~~~~~~GG~-~NvA~~la~LG~---~~~~i~ 60 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERI---S-PEAPVPVVK------------VEREEIRLGGA-ANVANNLASLGA---KVTLLG 60 (304)
T ss_pred CEEEEcceeEEeeEeeccccc---c-CCCCcceEE------------eeeEEecCcHH-HHHHHHHHHhCC---CeEEEE
Confidence 489999999999997753211 0 011111110 11234568995 899999999998 667776
Q ss_pred e------ccchhhhhhhhccceee
Q psy6978 88 V------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~~ 105 (112)
. .+.++..+++.||..+.
T Consensus 61 ~vG~D~~g~~i~~~l~~~gI~~~~ 84 (304)
T cd01172 61 VVGDDEAGDLLRKLLEKEGIDTDG 84 (304)
T ss_pred EEcCCccHHHHHHHHHhCCCCcce
Confidence 5 68899999999998664
No 22
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=97.61 E-value=8.9e-05 Score=56.55 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=49.0
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|.+++|+..+++ +..+||++.|+++.++.||. .+.|+|
T Consensus 2 ~v~~iG~~~~D~~~~~~----------------------------------~~~~GG~~~NvA~~l~~lG~---~~~~is 44 (260)
T PRK09813 2 KLATIGDNCVDIYPQLG----------------------------------KAFSGGNAVNVAVYCTRYGI---QPGCIT 44 (260)
T ss_pred eEEEeccceeeecccCC----------------------------------ccccCccHHHHHHHHHHcCC---cceEEE
Confidence 58999999999985431 13589999999999999998 788888
Q ss_pred e------ccchhhhhhhhccce
Q psy6978 88 V------QEEVKPVQMKSQISL 103 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~ 103 (112)
. .+.++.-+++.||..
T Consensus 45 ~vG~D~~g~~i~~~l~~~gI~~ 66 (260)
T PRK09813 45 WVGDDDYGTKLKQDLARMGVDI 66 (260)
T ss_pred EecCcHHHHHHHHHHHHcCCcc
Confidence 7 567888999999974
No 23
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=97.61 E-value=0.00015 Score=55.32 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=57.0
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|+..+|+...++.- ++.-.. .......+||++.|++++++.||. .+.++|
T Consensus 3 ~v~~iG~~~iD~~~~~~~~--------~~~~~~--------------~~~~~~~~GG~~~n~a~~l~~LG~---~v~~i~ 57 (301)
T PF00294_consen 3 KVLVIGEVNIDIIGYVDRF--------KGDLVR--------------VSSVKRSPGGAGANVAIALARLGA---DVALIG 57 (301)
T ss_dssp EEEEESEEEEEEEEESSSH--------TTSEEE--------------ESEEEEEEESHHHHHHHHHHHTTS---EEEEEE
T ss_pred cEEEECccceEEEeecCCc--------CCccee--------------cceEEEecCcHHHHHHHHHHhccC---cceEEe
Confidence 5899999999999988653 332211 124467899999999999999997 888888
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. ++.++..+.+.||..+
T Consensus 58 ~vG~D~~g~~i~~~l~~~gv~~~ 80 (301)
T PF00294_consen 58 KVGDDFFGEIILEELKERGVDTS 80 (301)
T ss_dssp EEESSHHHHHHHHHHHHTTEEET
T ss_pred eccCcchhhhhhhcccccccccc
Confidence 7 6778999999999764
No 24
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=97.58 E-value=0.00026 Score=53.73 Aligned_cols=72 Identities=11% Similarity=-0.052 Sum_probs=51.2
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++.+|++..++.- ...|..... ......+||++.|++.+++.||. .+.++|
T Consensus 1 ~il~iG~~~iD~~~~~~~~------~~~~~~~~~--------------~~~~~~~GG~~~Nva~~l~~lG~---~~~~i~ 57 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAP------PQPGGISHS--------------SDSRESPGGGGANVAVQLAKLGN---DVRFFS 57 (265)
T ss_pred CEEEEeeeeEEEEEEecCC------CCCCceeec--------------ccceeecCchHHHHHHHHHHcCC---ceEEEE
Confidence 4789999999999998641 122322111 13356799999999999999998 677777
Q ss_pred e------ccchhhhhhhhccce
Q psy6978 88 V------QEEVKPVQMKSQISL 103 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~ 103 (112)
. .+.++..+++ ++..
T Consensus 58 ~vG~D~~g~~i~~~l~~-~~~~ 78 (265)
T cd01947 58 NLGRDEIGIQSLEELES-GGDK 78 (265)
T ss_pred EecCChHHHHHHHHHHh-cCCc
Confidence 6 4567777777 6543
No 25
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=97.58 E-value=0.00014 Score=55.14 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=48.7
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|..++|+... +....+||++.|++++++.||. .+.|+|
T Consensus 1 ~v~~iG~~~~D~~~~----------------------------------~~~~~~GG~~~Nva~~la~lG~---~~~~~~ 43 (264)
T cd01940 1 RLAAIGDNVVDKYLH----------------------------------LGKMYPGGNALNVAVYAKRLGH---ESAYIG 43 (264)
T ss_pred CeEEEcceEEEEecc----------------------------------CceecCCCcHHHHHHHHHHcCC---CeeEEe
Confidence 478999999999843 0235699999999999999998 777777
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.+++-+++.||...
T Consensus 44 ~vG~D~~g~~i~~~l~~~gI~~~ 66 (264)
T cd01940 44 AVGNDDAGAHVRSTLKRLGVDIS 66 (264)
T ss_pred cccCchhHHHHHHHHHHcCCChh
Confidence 6 5678889999998743
No 26
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=97.55 E-value=0.00025 Score=59.01 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=56.7
Q ss_pred CCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCc
Q psy6978 3 DVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKS 82 (112)
Q Consensus 3 ~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~ 82 (112)
.|++.+|+++|++++|+...++-+ ++.-+.....+ ........+|| |+|++++++.||. .
T Consensus 7 ~~~~~~ilviG~~~lD~~~~~~~~---~~~~~~~~~~~-------------~~~~~~~~~GG-a~NvA~~la~LG~---~ 66 (473)
T PRK11316 7 DFERAGVLVVGDVMLDRYWYGPTS---RISPEAPVPVV-------------KVNQIEERPGG-AANVAMNIASLGA---Q 66 (473)
T ss_pred hhCCCcEEEECccEEeeeeecccc---eeCCCCCCCEE-------------EeeeEEecCcH-HHHHHHHHHHcCC---c
Confidence 355667999999999999886432 11110111100 01123456899 6999999999999 7
Q ss_pred eeEEee------ccchhhhhhhhcccee
Q psy6978 83 QISLRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 83 ~~~fg~------~~~~~~~~~~~~~~~~ 104 (112)
+.|+|. ++.+++-+++.||..+
T Consensus 67 v~~i~~vG~D~~g~~i~~~L~~~gI~~~ 94 (473)
T PRK11316 67 ARLVGLTGIDEAARALSKLLAAVGVKCD 94 (473)
T ss_pred EEEEEEEcCCHHHHHHHHHHHHcCCcee
Confidence 888886 5789999999998854
No 27
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=97.53 E-value=6.7e-05 Score=60.14 Aligned_cols=68 Identities=15% Similarity=0.041 Sum_probs=51.9
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCce--eE
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQ--IS 85 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~--~~ 85 (112)
+++++|.+++|++..-+. ......||||++|+++++++|++.+.++ .+
T Consensus 1 ~~~~~G~~~~d~i~~~~~------------------------------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~ 50 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS------------------------------EPVTNVLGGAGTYAILGARLFLPPPLSRSISW 50 (328)
T ss_pred CccccCcEEeeccccCCC------------------------------CccccccCCchhhHhhceeeecCCccccceee
Confidence 478999999999876641 1224569999999999999996543444 55
Q ss_pred Eee-----ccchhhhhhhhccceee
Q psy6978 86 LRV-----QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 86 fg~-----~~~~~~~~~~~~~~~~~ 105 (112)
+|- .+.++.-+++.||..+.
T Consensus 51 ~~~vG~D~G~~l~~~L~~~GVd~~~ 75 (328)
T cd01943 51 IVDKGSDFPKSVEDELESWGTGMVF 75 (328)
T ss_pred EEecCCCCCHHHHHHHHhcCCceEE
Confidence 554 68899999999998665
No 28
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=97.52 E-value=7.6e-05 Score=53.53 Aligned_cols=57 Identities=23% Similarity=0.206 Sum_probs=41.9
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
.|+++||+.+|+...+|.. .++|...... .....+||.+.|+++++++||. .+.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~~------~~~~~~~~~~--------------~~~~~~GG~~~n~a~~l~~LG~---~~~~~~ 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDAL------PLPGGLVRPG--------------DTEERAGGGAANVAVALARLGV---SVTLVG 57 (196)
T ss_pred CEEEEccceEEEEEEeccC------CCCCCeEEec--------------eeeecCCCcHHHHHHHHHHCCC---cEEEEE
Confidence 3899999999999998642 2223332221 3356799999999999999998 666666
No 29
>PRK09954 putative kinase; Provisional
Probab=97.51 E-value=0.0002 Score=57.59 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=55.1
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
.|+++|++.+|+.+.++..+. .+|+ .. ......+||++.|++++++.||. .+.|.|
T Consensus 59 ~v~viG~~~vD~~~~~~~~~p-----~~~~--~~--------------~~~~~~~GG~~~NvA~~larLG~---~v~~ig 114 (362)
T PRK09954 59 YCVVVGAINMDIRGMADIRYP-----QAAS--HP--------------GTIHCSAGGVGRNIAHNLALLGR---DVHLLS 114 (362)
T ss_pred cEEEEEEEEEEEEEeeCCcCc-----CCCC--CC--------------ceEEEecCcHHHHHHHHHHHcCC---CeEEEE
Confidence 588999999999998853221 1121 00 12356799999999999999999 778887
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.+++-+++.||..+
T Consensus 115 ~VG~D~~G~~i~~~l~~~GVd~~ 137 (362)
T PRK09954 115 AIGDDFYGETLLEETRRAGVNVS 137 (362)
T ss_pred EECCCHHHHHHHHHHHHcCCCcc
Confidence 7 6688999999999854
No 30
>PLN02323 probable fructokinase
Probab=97.49 E-value=0.0001 Score=58.12 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=53.2
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
+.+|+++|+.++|+...++.. + .. ........+||+++|+++++++||. .+.+
T Consensus 10 ~~~i~~iG~~~vD~~~~~~~~-------~-----~~------------~~~~~~~~~GG~~~NvA~~la~LG~---~~~~ 62 (330)
T PLN02323 10 SSLVVCFGEMLIDFVPTVSGV-------S-----LA------------EAPAFKKAPGGAPANVAVGISRLGG---SSAF 62 (330)
T ss_pred CCcEEEechhhhhhccCCCCC-------C-----cc------------cccceeecCCChHHHHHHHHHhcCC---ceeE
Confidence 446999999999998766421 0 00 0112245699999999999999988 6777
Q ss_pred Eee------ccchhhhhhhhcccee
Q psy6978 86 LRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~ 104 (112)
+|. .+.++..+++.||...
T Consensus 63 i~~vG~D~~g~~i~~~L~~~GI~~~ 87 (330)
T PLN02323 63 IGKVGDDEFGHMLADILKKNGVNNE 87 (330)
T ss_pred EEEecCChhHHHHHHHHHHcCCCCc
Confidence 776 5668999999998754
No 31
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=97.43 E-value=0.00036 Score=52.71 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=45.3
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++.+|++...+ .....+||+++|+++++++||. .+.+.|
T Consensus 1 ~il~iG~~~iD~~~~~~--------------------------------~~~~~~GG~~~Nva~~la~lG~---~~~~i~ 45 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG--------------------------------SGVVKPGGPATYASLTLSRLGL---TVKLVT 45 (254)
T ss_pred CeEEEcceeEEEEecCC--------------------------------ceEEecCchhhhHHHHHHHhCC---CeEEEE
Confidence 48999999999997531 1246689999999999999999 667776
Q ss_pred e-----ccchhhhhhhhccce
Q psy6978 88 V-----QEEVKPVQMKSQISL 103 (112)
Q Consensus 88 ~-----~~~~~~~~~~~~~~~ 103 (112)
. ..+ +.-+++.||..
T Consensus 46 ~vG~D~~g~-~~~l~~~gv~~ 65 (254)
T cd01937 46 KVGRDYPDK-WSDLFDNGIEV 65 (254)
T ss_pred eeCCCchHH-HHHHHHCCcEE
Confidence 6 122 45567778764
No 32
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=97.38 E-value=0.00028 Score=54.90 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=54.6
Q ss_pred CCCCcccEEEecCceeeeEee--cCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCC
Q psy6978 2 ADVREGLLLGLGNPLLDISAT--VDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQ 79 (112)
Q Consensus 2 ~~m~~~~IvgiGNpLvDi~a~--Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~ 79 (112)
+.|++.+|+++|+..+|+... ++. +..+. ++.-. ........+|| |+|++++++.||.
T Consensus 3 ~~~~~~~il~iG~~~iD~~~~~~~~~-~~~~~---~~~~~--------------~~~~~~~~~GG-a~NvA~~l~~lg~- 62 (315)
T TIGR02198 3 ASFKGAKVLVVGDVMLDRYWYGKVSR-ISPEA---PVPVV--------------KVEREEDRLGG-AANVARNIASLGA- 62 (315)
T ss_pred hhhCCCcEEEECceeEeeeeeecccc-cCCCC---CCceE--------------EEEEEEecCcH-HHHHHHHHHhcCC-
Confidence 346677899999999999986 322 10000 11000 00122456899 6999999999998
Q ss_pred CCceeEEee------ccchhhhhhhhccce
Q psy6978 80 MKSQISLRV------QEEVKPVQMKSQISL 103 (112)
Q Consensus 80 ~~~~~~fg~------~~~~~~~~~~~~~~~ 103 (112)
.+.|+|. .+.++..+++.||..
T Consensus 63 --~v~~i~~vG~D~~g~~i~~~l~~~gI~~ 90 (315)
T TIGR02198 63 --RVFLVGVVGDDEAGKRLEALLAEEGIDT 90 (315)
T ss_pred --ceEEEEEEecchhHHHHHHHHHHCCCCc
Confidence 7777776 578888999999983
No 33
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=97.36 E-value=0.00039 Score=53.92 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=48.9
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|+..+|+.- ++. ......+||++.|+++++++||. .+.++|
T Consensus 4 ~il~iG~~~iD~~~-------------~~~------------------~~~~~~~GG~~~N~a~~l~~LG~---~~~~v~ 49 (304)
T PRK09434 4 KVWVLGDAVVDLIP-------------EGE------------------NRYLKCPGGAPANVAVGIARLGG---ESGFIG 49 (304)
T ss_pred cEEEecchheeeec-------------CCC------------------CceeeCCCChHHHHHHHHHHcCC---CceEEE
Confidence 69999999999871 111 01134589999999999999988 677776
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.++.-+++.||...
T Consensus 50 ~vG~D~~g~~i~~~l~~~gI~~~ 72 (304)
T PRK09434 50 RVGDDPFGRFMQQTLQDEGVDTT 72 (304)
T ss_pred EecCchHHHHHHHHHHHcCCCCc
Confidence 5 5678999999999865
No 34
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=97.26 E-value=0.00053 Score=53.66 Aligned_cols=68 Identities=25% Similarity=0.205 Sum_probs=50.8
Q ss_pred cCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee----
Q psy6978 13 GNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV---- 88 (112)
Q Consensus 13 GNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~---- 88 (112)
-||-+|....+++ ++.|+...+. .....+||++.|++++++.||. .+.|+|.
T Consensus 7 ~np~~D~~~~~~~-------~~~~~~~~~~--------------~~~~~~GG~~~NvA~~la~LG~---~~~~~~~vGd~ 62 (309)
T PRK13508 7 LNPSIDISYPLDE-------LKLDTVNRVV--------------DVSKTAGGKGLNVTRVLSEFGE---NVLATGLIGGE 62 (309)
T ss_pred cChHHeEEEEeCC-------eeeCCeEEec--------------ceeecCCchHHHHHHHHHHcCC---CeEEEEEecCh
Confidence 4999999999964 2333332221 2245699999999999999998 5677765
Q ss_pred -ccchhhhhhhhccceee
Q psy6978 89 -QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 89 -~~~~~~~~~~~~~~~~~ 105 (112)
++.++.-+++ ||..+.
T Consensus 63 ~G~~i~~~l~~-gI~~~~ 79 (309)
T PRK13508 63 LGQFIAEHLDD-QIKHAF 79 (309)
T ss_pred hHHHHHHHHHc-CCCceE
Confidence 6888999999 998764
No 35
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=97.24 E-value=0.00082 Score=51.75 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=54.6
Q ss_pred EEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee-
Q psy6978 10 LGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV- 88 (112)
Q Consensus 10 vgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~- 88 (112)
..++||-+|+...+|. +++|.-.... +....+||++.|++.++++||. .+.|+|.
T Consensus 4 ~~~~~~~~D~~~~~~~-------~~~~~~~~~~--------------~~~~~~GG~~~Nva~~la~lG~---~v~~is~v 59 (289)
T cd01164 4 TVTLNPAIDLTIELDQ-------LQPGEVNRVS--------------STRKDAGGKGINVARVLKDLGV---EVTALGFL 59 (289)
T ss_pred EEecChHHeEEEEcCc-------ccCCceeecc--------------cccccCCcchhHHHHHHHHcCC---CeEEEEEc
Confidence 4689999999999983 2344322221 3356699999999999999998 6666666
Q ss_pred ----ccchhhhhhhhccceee
Q psy6978 89 ----QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 89 ----~~~~~~~~~~~~~~~~~ 105 (112)
.+.+++.+++.||..+.
T Consensus 60 G~D~g~~i~~~l~~~gi~~~~ 80 (289)
T cd01164 60 GGFTGDFFEALLKEEGIPDDF 80 (289)
T ss_pred cCchhHHHHHHHHHcCCCceE
Confidence 67899999999998664
No 36
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=97.23 E-value=0.00074 Score=52.83 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=54.5
Q ss_pred EEEec-CceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 9 LLGLG-NPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 9 IvgiG-NpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
|+.+- ||=+|+...+|+ +++|.-+.+++ ....+||++.|++++++.||. .+.+++
T Consensus 4 i~~~~~~p~~d~~~~~~~-------~~~~~~~~~~~--------------~~~~~GG~~~NvA~~l~~lG~---~~~~i~ 59 (309)
T PRK10294 4 IYTLTLAPSLDSATITPQ-------IYPEGKLRCSA--------------PVFEPGGGGINVARAIAHLGG---SATAIF 59 (309)
T ss_pred EEEEecChHHeEEEEeCc-------eeeCCeEEecc--------------ceecCCccHHHHHHHHHHcCC---CeEEEE
Confidence 66676 999999999964 24665544432 245699999999999999988 555665
Q ss_pred e-----ccchhhhhhhhcccee
Q psy6978 88 V-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~-----~~~~~~~~~~~~~~~~ 104 (112)
. ++.+++-+++.||..+
T Consensus 60 ~vG~~~g~~i~~~l~~~gv~~~ 81 (309)
T PRK10294 60 PAGGATGEHLVSLLADENVPVA 81 (309)
T ss_pred EecCccHHHHHHHHHHcCCCce
Confidence 3 6778889999999754
No 37
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=97.15 E-value=0.0015 Score=50.25 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=49.1
Q ss_pred cCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee----
Q psy6978 13 GNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV---- 88 (112)
Q Consensus 13 GNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~---- 88 (112)
|+..+|++..++. + ...|..+.+ ......+||++.|+++++++||. .+.|+|.
T Consensus 1 G~~~~D~~~~~~~-~-----p~~~~~~~~--------------~~~~~~~GG~~~Nva~~l~~lg~---~~~~~~~vG~D 57 (293)
T TIGR02152 1 GSINMDLVLRTDR-L-----PKPGETVHG--------------HSFQIGPGGKGANQAVAAARLGA---EVSMIGKVGDD 57 (293)
T ss_pred CCceEeEEEEeCC-C-----CCCCCcEec--------------CCceecCCCcHHHHHHHHHHCCC---CEEEEEEecCC
Confidence 6788999988863 1 112221111 13356799999999999999998 5566654
Q ss_pred --ccchhhhhhhhccceee
Q psy6978 89 --QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 89 --~~~~~~~~~~~~~~~~~ 105 (112)
.+.++..+++.||..+.
T Consensus 58 ~~g~~i~~~l~~~gi~~~~ 76 (293)
T TIGR02152 58 AFGDELLENLKSNGIDTEY 76 (293)
T ss_pred ccHHHHHHHHHHcCCCeeE
Confidence 56788999999998654
No 38
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=97.11 E-value=0.0014 Score=51.27 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=49.7
Q ss_pred EEEec-CceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 9 LLGLG-NPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 9 IvgiG-NpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
|+-+. ||-+|++..+|+ | ++|....+++ ....+||++.|+++.++.||. .+.|+|
T Consensus 5 ~~~~~~~p~~D~~~~~~~-~------~~~~~~~~~~--------------~~~~~GG~~~Nva~~la~lG~---~~~~i~ 60 (312)
T PRK09513 5 VATITLNPAYDLVGFCPE-I------ERGEVNLVKT--------------TGLHAAGKGINVAKVLKDLGI---DVTVGG 60 (312)
T ss_pred EEEEecChHHeEEEEcCc-e------ecCCeeeecc--------------eeecCCchHHHHHHHHHHcCC---CeEEEE
Confidence 66566 999999999866 3 2355443332 245699999999999999998 677777
Q ss_pred e------ccchhhhhhhhccce
Q psy6978 88 V------QEEVKPVQMKSQISL 103 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~ 103 (112)
+ .+ ..+-+++.||..
T Consensus 61 ~vG~D~~~~-~~~~l~~~gv~~ 81 (312)
T PRK09513 61 FLGKDNQDG-FQQLFSELGIAN 81 (312)
T ss_pred EecCccHHH-HHHHHHHcCCCc
Confidence 6 23 345567777764
No 39
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=96.95 E-value=0.0014 Score=50.42 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=51.4
Q ss_pred ecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee---
Q psy6978 12 LGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV--- 88 (112)
Q Consensus 12 iGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~--- 88 (112)
-=||-+|+.+.+|. +++|.-.-+. .....+||++.|+++++++||. .+.|+|.
T Consensus 5 ~~~~~~D~~~~~~~-------~~~g~~~~~~--------------~~~~~~GG~~~NvA~~la~lG~---~v~~is~vG~ 60 (304)
T TIGR03828 5 TLNPAIDLTIELDG-------LTLGEVNRVE--------------STRIDAGGKGINVSRVLKNLGV---DVVALGFLGG 60 (304)
T ss_pred EcchHHeEEEEccc-------cccCceeecc--------------cccccCCccHHHHHHHHHHcCC---CeEEEEEecC
Confidence 34899999999875 2344432221 2245699999999999999998 5666665
Q ss_pred --ccchhhhhhhhccceee
Q psy6978 89 --QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 89 --~~~~~~~~~~~~~~~~~ 105 (112)
.+.++..+++.||..+.
T Consensus 61 D~g~~~~~~L~~~gId~~~ 79 (304)
T TIGR03828 61 FTGDFIEALLREEGIKTDF 79 (304)
T ss_pred chhHHHHHHHHHCCCcceE
Confidence 57889999999998653
No 40
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=96.92 E-value=0.00094 Score=57.63 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=55.7
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHh--hC--CCCeeecChHHHHHHHHHHhCCCCCCce
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLI--KN--NNVDYIAGGSTQNTLRVAQVKPVQMKSQ 83 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~--~~--~~~~~~~GGSA~NTir~~a~Lg~~~~~~ 83 (112)
.|+|||-+|+|++...... +.. .+-.+|+... ++ ..-...+||+++|++++++.||. .+
T Consensus 127 ~v~~~Ge~liDf~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~---~v 189 (496)
T PLN02543 127 LVCCFGAVQKEFVPTVRVH-DNQ-------------MHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGG---RA 189 (496)
T ss_pred eEEEeChhhhhhcCCCccc-ccc-------------cccccccccccccccCCeeEeccCcHHHHHHHHHHHCCC---CE
Confidence 4999999999998753210 100 0011121110 11 12356799999999999999999 89
Q ss_pred eEEee------ccchhhhhhhhcccee
Q psy6978 84 ISLRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 84 ~~fg~------~~~~~~~~~~~~~~~~ 104 (112)
.|+|. ++.++.-+++.||..+
T Consensus 190 afIG~VGdD~fG~~l~~~L~~~GVDts 216 (496)
T PLN02543 190 AFMGKVGDDDFGEELVLMMNKERVQTR 216 (496)
T ss_pred EEEEEeCCCHHHHHHHHHHHHcCCccc
Confidence 99998 6889999999999854
No 41
>PLN02967 kinase
Probab=96.91 E-value=0.00092 Score=58.90 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=54.8
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehH-HHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADE-KHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de-~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
.|+|||-+|+|++-.... . -.|... .+.++...-.+.......+||+++|++.+++.||. .+.|.
T Consensus 198 ~V~~iGe~l~D~~p~g~~---------~--~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~---~v~fI 263 (581)
T PLN02967 198 LVCCFGAAQHAFVPSGRP---------A--NRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGG---KVAFM 263 (581)
T ss_pred eEEEECchhheecccCcc---------c--hhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCC---CEEEE
Confidence 499999999999762100 0 011111 11111111001123366799999999999999998 88898
Q ss_pred ee------ccchhhhhhhhcccee
Q psy6978 87 RV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 87 g~------~~~~~~~~~~~~~~~~ 104 (112)
|. ++.++.-+++.||..+
T Consensus 264 g~VGdD~~G~~ll~~L~~~GVDts 287 (581)
T PLN02967 264 GKLGDDDYGQAMLYYLNVNKVQTR 287 (581)
T ss_pred EEeCCCHHHHHHHHHHHHcCCccc
Confidence 88 6789999999999854
No 42
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=96.85 E-value=0.0017 Score=49.85 Aligned_cols=62 Identities=24% Similarity=0.093 Sum_probs=43.6
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|.+++|++-.. .+ .....+||+++|++.+++.|+. +.|+|
T Consensus 1 ~v~~~G~~~~D~~~~~-----------~~--------------------~~~~~~GG~a~N~a~~la~lg~----v~~i~ 45 (277)
T cd01946 1 SLLVVGSVAFDAIETP-----------FG--------------------KVDKALGGSATYFSLSASYFTD----VRLVG 45 (277)
T ss_pred CeEEEEEeeeeeecCC-----------Cc--------------------eeeeccCchHHHHHHHHHHhcc----ceeEE
Confidence 4799999999999100 00 1134589999999999999952 55555
Q ss_pred e-----ccchhhhhhhhcccee
Q psy6978 88 V-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~-----~~~~~~~~~~~~~~~~ 104 (112)
. ...++.-+++.||..+
T Consensus 46 ~vG~D~g~~~~~~l~~~gi~~~ 67 (277)
T cd01946 46 VVGEDFPEEDYKLLNSHNIVTL 67 (277)
T ss_pred eccCcChHHHHHHHHhccCcce
Confidence 5 4556777778777643
No 43
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=96.80 E-value=0.002 Score=49.95 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=49.8
Q ss_pred CceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee-----
Q psy6978 14 NPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV----- 88 (112)
Q Consensus 14 NpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~----- 88 (112)
|+-+|+...+|. +.+|.-..++ .....+||++.|+++++++||. .+.|.|.
T Consensus 7 ~~~~D~~~~~~~-------~~~~~~~~~~--------------~~~~~~GG~~~N~a~~l~~lg~---~~~~i~~vG~D~ 62 (303)
T TIGR03168 7 NPAIDLTIEVDG-------LTPGEVNRVA--------------AVRKDAGGKGINVARVLARLGA---EVVATGFLGGFT 62 (303)
T ss_pred chHHeEEEEcCc-------cccCceeecC--------------cccccCCcchhhHHHHHHHcCC---CeEEEEEeCCch
Confidence 778999998876 2445432222 2246699999999999999988 5566665
Q ss_pred ccchhhhhhhhcccee
Q psy6978 89 QEEVKPVQMKSQISLR 104 (112)
Q Consensus 89 ~~~~~~~~~~~~~~~~ 104 (112)
.+.++..+++.||..+
T Consensus 63 g~~i~~~l~~~gI~~~ 78 (303)
T TIGR03168 63 GEFIEALLAEEGIKND 78 (303)
T ss_pred hHHHHHHHHHcCCCce
Confidence 5788889999999765
No 44
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=96.42 E-value=0.01 Score=48.43 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=40.7
Q ss_pred CcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCcee
Q psy6978 5 REGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQI 84 (112)
Q Consensus 5 ~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~ 84 (112)
...+|+++||..+|+++.+ |. . ....+||+++|++.+++.||. .+.
T Consensus 10 ~~~~vlvvG~~~~D~i~~~------------g~-~------------------~~~~~GG~a~N~A~alarLG~---~~~ 55 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQN------------GS-V------------------TAESLGGAASFISNVLDALSV---ECE 55 (335)
T ss_pred CCCCEEEEeeeeeeEEEeC------------Cc-E------------------EEEecCcHHHHHHHHHHHcCC---ceE
Confidence 3567999999999999876 21 1 245689999999999999998 777
Q ss_pred EEee
Q psy6978 85 SLRV 88 (112)
Q Consensus 85 ~fg~ 88 (112)
|.|.
T Consensus 56 lis~ 59 (335)
T PLN02630 56 LVSK 59 (335)
T ss_pred EEEE
Confidence 7777
No 45
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=95.76 E-value=0.0096 Score=46.55 Aligned_cols=70 Identities=27% Similarity=0.215 Sum_probs=50.4
Q ss_pred CceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe--eccc
Q psy6978 14 NPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR--VQEE 91 (112)
Q Consensus 14 NpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg--~~~~ 91 (112)
||=+|+...+++ ++.|...-++ .....+||++.|+++++++||.+.....+.| .++.
T Consensus 7 ~p~~d~~~~~~~-------~~~~~~~~~~--------------~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~~G~~ 65 (309)
T TIGR01231 7 NPSVDISYPLTA-------LKLDTVNRVQ--------------EVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGKLGEF 65 (309)
T ss_pred chHHeEEEEcCC-------eeeCceEeec--------------eeeecCCccHHHHHHHHHHcCCCeEEEEEecChhHHH
Confidence 788888777755 3444432221 2245689999999999999998554455555 3788
Q ss_pred hhhhhhhhcccee
Q psy6978 92 VKPVQMKSQISLR 104 (112)
Q Consensus 92 ~~~~~~~~~~~~~ 104 (112)
+++.+++.||..+
T Consensus 66 i~~~l~~~GV~~~ 78 (309)
T TIGR01231 66 IEKELDHSDIKHA 78 (309)
T ss_pred HHHHHHHcCCcee
Confidence 9999999999865
No 46
>KOG2855|consensus
Probab=92.92 E-value=0.16 Score=42.40 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=53.1
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
...|+++|+++.|+.-.++. +++..- ......-.+.+||-.+|-+.+++.||+ ++.|
T Consensus 9 ~~~vv~fGs~~~D~V~~~~~-------~p~~ge-------------~~~~~~f~~~~GG~~aN~AvaaarLG~---~~af 65 (330)
T KOG2855|consen 9 PPLVVVFGSMLIDFVPSTRR-------LPNAGE-------------TWEPPGFKTAPGGKGANQAVAAARLGG---RVAF 65 (330)
T ss_pred CceEEEeccceeeeeecccc-------CCCccc-------------cccCCcceecCCCcchhhhhHHHhcCc---ceee
Confidence 34699999999999987743 111111 112223478899999999999999998 8888
Q ss_pred Eee------ccchhhhhhhhccce
Q psy6978 86 LRV------QEEVKPVQMKSQISL 103 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~ 103 (112)
-|= +..+-.++.+-+|..
T Consensus 66 iGkvGdD~fG~~l~~~L~~~~V~~ 89 (330)
T KOG2855|consen 66 IGKVGDDEFGDDLLDILKQNGVDT 89 (330)
T ss_pred eecccchhhHHHHHHHHhhCCccc
Confidence 886 556666666655543
No 47
>KOG2947|consensus
Probab=87.02 E-value=0.98 Score=37.14 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=48.5
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
.|+|.|-..+|++.-+|- |-.+- .++.-+-... .-||-|.|..-++..||. .+-|||
T Consensus 6 ~VLcVG~~~lD~iTivd~-----~~fe~-------~~~r~~~g~w--------qRgG~asNvcTvlrlLG~---~cef~G 62 (308)
T KOG2947|consen 6 QVLCVGCTVLDVITIVDK-----YPFED-------SEIRCLSGRW--------QRGGNASNVCTVLRLLGA---PCEFFG 62 (308)
T ss_pred eEEEeccEEEEEEEeccC-----CCCCc-------cceehhhhhh--------hcCCCcchHHHHHHHhCC---chheee
Confidence 599999999999987753 22211 1222222222 249999999999999999 899999
Q ss_pred e---ccchhhh---hhhhccce
Q psy6978 88 V---QEEVKPV---QMKSQISL 103 (112)
Q Consensus 88 ~---~~~~~~~---~~~~~~~~ 103 (112)
+ ..-.|.+ ++++||..
T Consensus 63 vlsr~~~f~~lLddl~~rgIdi 84 (308)
T KOG2947|consen 63 VLSRGHVFRFLLDDLRRRGIDI 84 (308)
T ss_pred ecccchhHHHHHHHHHhcCCCc
Confidence 9 2223333 45566654
No 48
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=83.86 E-value=0.88 Score=37.62 Aligned_cols=71 Identities=23% Similarity=0.165 Sum_probs=52.2
Q ss_pred CceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee--ccc
Q psy6978 14 NPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV--QEE 91 (112)
Q Consensus 14 NpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~--~~~ 91 (112)
||-+|....+|+ +++|...-+ ......|||=..|..|+++.+|..+-..-|+|= ++-
T Consensus 8 NPaiD~~~~l~~-------l~~g~vNr~--------------~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~tg~~ 66 (310)
T COG1105 8 NPALDYTVFLDE-------LELGEVNRV--------------RAVTKTAGGKGINVARVLKDLGIPVTALGFLGGFTGEF 66 (310)
T ss_pred ChhHhheeeccc-------ccccceeee--------------ccceecCCCCceeHHHHHHHcCCCceEEEecCCccHHH
Confidence 788888888744 344433111 244678999999999999999996667777776 667
Q ss_pred hhhhhhhhccceee
Q psy6978 92 VKPVQMKSQISLRV 105 (112)
Q Consensus 92 ~~~~~~~~~~~~~~ 105 (112)
+++.+++.||.-+.
T Consensus 67 ~~~~l~~~gi~~~f 80 (310)
T COG1105 67 FVALLKDEGIPDAF 80 (310)
T ss_pred HHHHHHhcCCCceE
Confidence 88888888886543
No 49
>KOG1546|consensus
Probab=51.77 E-value=25 Score=29.91 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=37.1
Q ss_pred HHHHHcCCCCCce-eeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCC--CCCCceeEEee
Q psy6978 26 SFLEKYNLKANNA-ILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKP--VQMKSQISLRV 88 (112)
Q Consensus 26 ~fL~~~gL~kG~m-~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg--~~~~~~~~fg~ 88 (112)
-++++||....+. .|.|+ +. .....|=| .|-.+++.||= .+|+.+.||=.
T Consensus 93 ~Lv~rfGFs~ddI~~LtDt----------~~-s~~~~PT~--~Nir~Al~wLV~~aq~gD~LvfHY 145 (362)
T KOG1546|consen 93 LLVERFGFSEDDILMLTDT----------DE-SPVRIPTG--KNIRRALRWLVESAQPGDSLVFHY 145 (362)
T ss_pred HHHHhhCCChhheEEEecC----------CC-cccccCcH--HHHHHHHHHHHhcCCCCCEEEEEe
Confidence 4689999999998 56665 12 22234666 89999999994 45889999965
No 50
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=49.43 E-value=40 Score=28.46 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=42.2
Q ss_pred eecCHHHHHHcCCCC-Cceee--ehH---HHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee
Q psy6978 21 ATVDASFLEKYNLKA-NNAIL--ADE---KHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV 88 (112)
Q Consensus 21 a~Vdd~fL~~~gL~k-G~m~L--~de---~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~ 88 (112)
....++.++.+--.. +.... .|+ +..+.++++.+.....++|+|+++|.+...++. +|+.+++-.-
T Consensus 10 ~g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~--~~~~~vi~~~ 81 (342)
T COG2008 10 AGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHC--QPGESVICHE 81 (342)
T ss_pred CCCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhc--CCCCeEEEec
Confidence 334455555554444 22211 122 455666666555567999999999999999888 6787777655
No 51
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=43.74 E-value=24 Score=25.12 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=48.5
Q ss_pred ccEEEecCceee--------eEeecC----HHHHHHcCCCCCceeee-hH--HHHHHHHHHhhCCCCeeecChHHHH---
Q psy6978 7 GLLLGLGNPLLD--------ISATVD----ASFLEKYNLKANNAILA-DE--KHKDLYEDLIKNNNVDYIAGGSTQN--- 68 (112)
Q Consensus 7 ~~IvgiGNpLvD--------i~a~Vd----d~fL~~~gL~kG~m~L~-de--~~~~L~~eL~~~~~~~~~~GGSA~N--- 68 (112)
.-|+..|+-|++ -...-+ .++|+++|.+--...++ |+ +..+.+.++.+..+...+.||+..-
T Consensus 3 v~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~~D 82 (144)
T TIGR00177 3 VAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGPRD 82 (144)
T ss_pred EEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCc
Confidence 346778888774 222222 25688899887777444 43 3444455554556778888998762
Q ss_pred -HHHHHHhCCCCCCceeEEeecc
Q psy6978 69 -TLRVAQVKPVQMKSQISLRVQE 90 (112)
Q Consensus 69 -Tir~~a~Lg~~~~~~~~fg~~~ 90 (112)
|-.+++.++ ...|+|+.+
T Consensus 83 ~t~~ai~~~g----~~~~~gv~~ 101 (144)
T TIGR00177 83 VTPEALEELG----EKEIPGFGE 101 (144)
T ss_pred cHHHHHHHhC----cEEEeeecc
Confidence 445666554 356666543
No 52
>COG5510 Predicted small secreted protein [Function unknown]
Probab=42.09 E-value=10 Score=23.13 Aligned_cols=9 Identities=44% Similarity=0.453 Sum_probs=7.4
Q ss_pred HHHHHHHHH
Q psy6978 65 STQNTLRVA 73 (112)
Q Consensus 65 SA~NTir~~ 73 (112)
+++||+|++
T Consensus 20 aaCNT~rG~ 28 (44)
T COG5510 20 AACNTMRGA 28 (44)
T ss_pred HHhhhhhcc
Confidence 568999987
No 53
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.48 E-value=32 Score=30.13 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=51.8
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
+..|+.+|.-++|-...-+-+ .+..|.--++. +-......+|| |+|.++-++.||. .+..
T Consensus 10 ~~kVLVvGDvmLDrY~~G~~~------------RISPEAPVPVv----~v~~e~~rlGG-AaNVa~NiasLGa---~a~l 69 (467)
T COG2870 10 QAKVLVVGDVMLDRYWYGKVS------------RISPEAPVPVV----KVEKEEERLGG-AANVAKNIASLGA---NAYL 69 (467)
T ss_pred CCcEEEEcceeeeeecccccc------------ccCCCCCCceE----Eeccccccccc-HHHHHHHHHHcCC---CEEE
Confidence 456899999999987643221 11111011111 01122445777 7899999999999 7888
Q ss_pred Eee------ccchhhhhhhhccceeee
Q psy6978 86 LRV------QEEVKPVQMKSQISLRVQ 106 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~~~ 106 (112)
.|+ +..++..+.+.+|...+.
T Consensus 70 ~GvvG~Deag~~L~~~l~~~~i~~~l~ 96 (467)
T COG2870 70 VGVVGKDEAGKALIELLKANGIDSDLL 96 (467)
T ss_pred EEeeccchhHHHHHHHHHhcCcccceE
Confidence 887 667777888888776654
No 54
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=39.08 E-value=31 Score=22.42 Aligned_cols=19 Identities=21% Similarity=0.564 Sum_probs=16.0
Q ss_pred ecCHHHHHHcCCCCCceee
Q psy6978 22 TVDASFLEKYNLKANNAIL 40 (112)
Q Consensus 22 ~Vdd~fL~~~gL~kG~m~L 40 (112)
-|+.+.+++|+|.+|+.+.
T Consensus 30 yVs~~~Irr~~LR~GD~V~ 48 (68)
T cd04459 30 YVSPSQIRRFNLRTGDTVV 48 (68)
T ss_pred EECHHHHHHhCCCCCCEEE
Confidence 4688999999999999743
No 55
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=37.99 E-value=65 Score=24.35 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=33.8
Q ss_pred eeecChHHHHHHHHHHhCCCCC-CceeEEeeccchhhhhhhhccce
Q psy6978 59 DYIAGGSTQNTLRVAQVKPVQM-KSQISLRVQEEVKPVQMKSQISL 103 (112)
Q Consensus 59 ~~~~GGSA~NTir~~a~Lg~~~-~~~~~fg~~~~~~~~~~~~~~~~ 103 (112)
..+.|||+.-++..+..-|.+. +..+++--.+.-+.-+.+.||+.
T Consensus 131 VitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~ 176 (187)
T PRK13810 131 VTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVEL 176 (187)
T ss_pred ccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcE
Confidence 3468999999999999998863 45666665666677777788754
No 56
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=36.55 E-value=20 Score=25.92 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=10.7
Q ss_pred CCcccEEEecCcee
Q psy6978 4 VREGLLLGLGNPLL 17 (112)
Q Consensus 4 m~~~~IvgiGNpLv 17 (112)
+++.-|+|+||+|.
T Consensus 2 ~~~ilVlGiGN~l~ 15 (153)
T TIGR00130 2 NHEILVVGCGNILF 15 (153)
T ss_pred CceEEEEEeCcccc
Confidence 34556999999984
No 57
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=36.23 E-value=54 Score=26.41 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhCCCCee-ecChHHHHHHHHHHhCCCCCC
Q psy6978 44 KHKDLYEDLIKNNNVDY-IAGGSTQNTLRVAQVKPVQMK 81 (112)
Q Consensus 44 ~~~~L~~eL~~~~~~~~-~~GGSA~NTir~~a~Lg~~~~ 81 (112)
....++.+..+...... +.|+|+.|+.+++++.+..-+
T Consensus 57 ~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G 95 (329)
T PRK14045 57 KLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLG 95 (329)
T ss_pred HHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcC
Confidence 45556666543333333 349999999999999877644
No 58
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=35.40 E-value=52 Score=26.01 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCC-CCeeecChHHHHHHHHHHhCCCCCC
Q psy6978 44 KHKDLYEDLIKNN-NVDYIAGGSTQNTLRVAQVKPVQMK 81 (112)
Q Consensus 44 ~~~~L~~eL~~~~-~~~~~~GGSA~NTir~~a~Lg~~~~ 81 (112)
....++.+..+.. .....+|||..|+.+++++.+..-+
T Consensus 39 ~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G 77 (307)
T cd06449 39 KLEYLLPDALAKGADTLVTVGGIQSNHTRQVAAVAAKLG 77 (307)
T ss_pred HHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHcC
Confidence 3445555554332 3356789999999999999877544
No 59
>KOG3009|consensus
Probab=34.66 E-value=58 Score=29.25 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=35.9
Q ss_pred EEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCC
Q psy6978 9 LLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPV 78 (112)
Q Consensus 9 IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~ 78 (112)
=+++|..++|..+.+|++. +-++.. -+.-..+..||-|-|-+-+++.||.
T Consensus 343 Pv~vGa~i~D~~~k~d~d~------K~dG~s--------------y~~~~~Qa~GGVarN~A~a~~~lg~ 392 (614)
T KOG3009|consen 343 PVSVGATIVDFEAKTDEDV------KDDGGS--------------YNGQVVQAMGGVARNHADALARLGC 392 (614)
T ss_pred ceeecceEEEeEEeecccc------cccCCc--------------ccchhhhhccchhhhHHHHHHHhcC
Confidence 3799999999999998821 111100 0012356689999999999999998
No 60
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=33.89 E-value=92 Score=23.18 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=34.9
Q ss_pred eeecChHHHHHHHHHHhCCCCC-CceeEEeeccchhhhhhhhccce
Q psy6978 59 DYIAGGSTQNTLRVAQVKPVQM-KSQISLRVQEEVKPVQMKSQISL 103 (112)
Q Consensus 59 ~~~~GGSA~NTir~~a~Lg~~~-~~~~~fg~~~~~~~~~~~~~~~~ 103 (112)
....|||..-++..+...|.+. +.++++--.+.-++.+++.|+..
T Consensus 116 vitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v 161 (176)
T PRK13812 116 IATTGQSAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVEL 161 (176)
T ss_pred eeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcE
Confidence 3568999999999999999863 56666766667777778777654
No 61
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=33.56 E-value=72 Score=21.70 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=22.5
Q ss_pred eeecChHHHHHHHHHHhCCCCCCceeEEee
Q psy6978 59 DYIAGGSTQNTLRVAQVKPVQMKSQISLRV 88 (112)
Q Consensus 59 ~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~ 88 (112)
+.+.|.|++.++|.+-...+.++....|.-
T Consensus 2 HI~~g~s~a~sLk~a~~~~g~~~~Vi~~~d 31 (124)
T PF08874_consen 2 HIVFGDSAAGSLKQALKQSGFEGDVICFRD 31 (124)
T ss_pred eEecCcchHHHHHHHHHhcCCCCcEEEEeC
Confidence 578899999999986544346667777765
No 62
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=32.71 E-value=51 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhCCCCe-eecChHHHHHHHHHHhCCCCCC-ceeEE
Q psy6978 44 KHKDLYEDLIKNNNVD-YIAGGSTQNTLRVAQVKPVQMK-SQISL 86 (112)
Q Consensus 44 ~~~~L~~eL~~~~~~~-~~~GGSA~NTir~~a~Lg~~~~-~~~~f 86 (112)
+...++.+..+..... ..+|||..|+.++++|.+..-+ .++.|
T Consensus 54 ~~~~~l~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv 98 (337)
T PRK12390 54 KLEYLVPDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLV 98 (337)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCeEEEE
Confidence 5566666665444343 6679999999999999987644 44444
No 63
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=31.52 E-value=56 Score=26.33 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhCCCCe-eecChHHHHHHHHHHhCCCCCC-ceeEE
Q psy6978 44 KHKDLYEDLIKNNNVD-YIAGGSTQNTLRVAQVKPVQMK-SQISL 86 (112)
Q Consensus 44 ~~~~L~~eL~~~~~~~-~~~GGSA~NTir~~a~Lg~~~~-~~~~f 86 (112)
+...++.+..+..-.. .++|||..|+.+++++.+..-+ .+..|
T Consensus 53 ~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv 97 (337)
T TIGR01274 53 KLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLV 97 (337)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEE
Confidence 5666666664444333 5679999999999999877644 44444
No 64
>PRK14135 recX recombination regulator RecX; Provisional
Probab=29.83 E-value=73 Score=24.64 Aligned_cols=73 Identities=25% Similarity=0.249 Sum_probs=45.6
Q ss_pred eEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEeeccchhhhhhh
Q psy6978 19 ISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRVQEEVKPVQMK 98 (112)
Q Consensus 19 i~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~~~~~~~~~~~ 98 (112)
..+.|+.+.+.+|+|.+|. .|.+++-.+|...-.. -.|-| +|+.+|..++.+. -|+++-+.+
T Consensus 22 ~~~~~~~~~~~~~~L~~g~-~l~~~~~~~i~~~~~~---------~~a~~--~Al~~L~~r~~s~------~el~~kL~~ 83 (263)
T PRK14135 22 YAFSVDEDTLVKFMLKKGK-ELDEEDLEEIQYADQV---------SKGKN--LALYYLSYQMRTE------KEVRDYLKK 83 (263)
T ss_pred eEEEeeHHHHHHhcCcCCC-cCCHHHHHHHHHHHHH---------HHHHH--HHHHHhhhccccH------HHHHHHHHH
Confidence 3467899999999999995 5777777777655310 01122 2455555544333 678888887
Q ss_pred hccceeeecce
Q psy6978 99 SQISLRVQEEV 109 (112)
Q Consensus 99 ~~~~~~~~~~~ 109 (112)
.|++.-+-++|
T Consensus 84 kg~~~~~Ie~v 94 (263)
T PRK14135 84 HEISEEIISEV 94 (263)
T ss_pred CCCCHHHHHHH
Confidence 77765444443
No 65
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=29.41 E-value=29 Score=24.47 Aligned_cols=9 Identities=67% Similarity=1.040 Sum_probs=7.4
Q ss_pred EEEecCcee
Q psy6978 9 LLGLGNPLL 17 (112)
Q Consensus 9 IvgiGNpLv 17 (112)
|+|+||+|.
T Consensus 2 VlGiGN~L~ 10 (136)
T cd06067 2 LLGVGNELR 10 (136)
T ss_pred EEEeCcccc
Confidence 789999884
No 66
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=29.01 E-value=26 Score=21.64 Aligned_cols=11 Identities=27% Similarity=-0.043 Sum_probs=8.9
Q ss_pred ChHHHHHHHHH
Q psy6978 63 GGSTQNTLRVA 73 (112)
Q Consensus 63 GGSA~NTir~~ 73 (112)
+=|+|||++++
T Consensus 18 ~l~~CnTv~G~ 28 (48)
T PRK10081 18 VLTACNTTRGV 28 (48)
T ss_pred HHhhhhhhhhh
Confidence 45789999987
No 67
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=28.61 E-value=38 Score=25.90 Aligned_cols=12 Identities=42% Similarity=0.709 Sum_probs=9.9
Q ss_pred cccEEEecCcee
Q psy6978 6 EGLLLGLGNPLL 17 (112)
Q Consensus 6 ~~~IvgiGNpLv 17 (112)
+.-|+|+||+|.
T Consensus 5 rilVlGiGN~L~ 16 (195)
T PRK10264 5 RVVVMGLGNLLW 16 (195)
T ss_pred CEEEEEeCcccc
Confidence 557999999984
No 68
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=27.72 E-value=50 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=24.1
Q ss_pred ccEEEecCceeeeEe-ec-CHHHHHHcCCCCCce
Q psy6978 7 GLLLGLGNPLLDISA-TV-DASFLEKYNLKANNA 38 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a-~V-dd~fL~~~gL~kG~m 38 (112)
.++..+||||+|... .- .+++.+++|++++..
T Consensus 381 v~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~ 414 (608)
T PRK01021 381 LRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKP 414 (608)
T ss_pred CCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCC
Confidence 457899999999865 22 356889999976654
No 69
>cd07049 BMC_EutL_repeat1 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 1 (the first BMC domain of EutL).
Probab=27.58 E-value=57 Score=23.08 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.4
Q ss_pred eEeecCHHHHHHcCCCCC
Q psy6978 19 ISATVDASFLEKYNLKAN 36 (112)
Q Consensus 19 i~a~Vdd~fL~~~gL~kG 36 (112)
+++.+|+++.+++||+++
T Consensus 6 vIan~d~~l~~klgl~~~ 23 (103)
T cd07049 6 VIPNVDPDLAKELSLPPH 23 (103)
T ss_pred EecCCCHHHHHHcCCCCC
Confidence 467899999999999754
No 70
>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group. These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.
Probab=27.23 E-value=33 Score=24.51 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=7.4
Q ss_pred EEEecCcee
Q psy6978 9 LLGLGNPLL 17 (112)
Q Consensus 9 IvgiGNpLv 17 (112)
|+|+||+|.
T Consensus 2 ViGiGN~l~ 10 (150)
T cd06064 2 VVGCGNILF 10 (150)
T ss_pred EEEECCccc
Confidence 789999884
No 71
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=27.15 E-value=1.2e+02 Score=23.26 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=29.3
Q ss_pred eeecChHHHHHHHHHHhCCCCC-CceeEEeeccchhhhhhhhccce
Q psy6978 59 DYIAGGSTQNTLRVAQVKPVQM-KSQISLRVQEEVKPVQMKSQISL 103 (112)
Q Consensus 59 ~~~~GGSA~NTir~~a~Lg~~~-~~~~~fg~~~~~~~~~~~~~~~~ 103 (112)
..+.|||..-++..+..-|.++ +...++--.+.-+.-+.+.|+..
T Consensus 127 ViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v 172 (206)
T PRK13809 127 MVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKL 172 (206)
T ss_pred ccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCE
Confidence 3568999999999999998864 33344333334445555566543
No 72
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=27.15 E-value=66 Score=22.37 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=34.4
Q ss_pred cEEEecCceeeeE-----eecCHHHHHHcCCCCCceeee-hH--HHHHHHHHHhhCCCCeeecChHHH
Q psy6978 8 LLLGLGNPLLDIS-----ATVDASFLEKYNLKANNAILA-DE--KHKDLYEDLIKNNNVDYIAGGSTQ 67 (112)
Q Consensus 8 ~IvgiGNpLvDi~-----a~Vdd~fL~~~gL~kG~m~L~-de--~~~~L~~eL~~~~~~~~~~GGSA~ 67 (112)
-|+..|+.+++=. ...=.+.|+++|.+.-...++ |+ ...+.+.++.+..+...+.||+..
T Consensus 3 ~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~ 70 (133)
T cd00758 3 AIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGV 70 (133)
T ss_pred EEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 4778888876321 111225688888766544333 33 233444444445677888999763
No 73
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=26.81 E-value=1e+02 Score=20.70 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=30.0
Q ss_pred cChHHHHHHHHHHhCCCCCCceeEEeeccchhhhhhhhccc
Q psy6978 62 AGGSTQNTLRVAQVKPVQMKSQISLRVQEEVKPVQMKSQIS 102 (112)
Q Consensus 62 ~GGSA~NTir~~a~Lg~~~~~~~~fg~~~~~~~~~~~~~~~ 102 (112)
+-|.-.+....+...|. ...+.|+.++|+.+++..|..
T Consensus 61 gl~~L~~~~~~~~~~g~---~~~l~~i~p~v~~~~~~~gl~ 98 (117)
T COG1366 61 GLGVLVALLKSARLRGV---ELVLVGIQPEVARTLELTGLD 98 (117)
T ss_pred HHHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCch
Confidence 44555666666666666 899999999999999998875
No 74
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=26.75 E-value=97 Score=22.79 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=34.2
Q ss_pred eeecChHHHHHHHHHHhCCCCC-CceeEEeeccchhhhhhhhcccee
Q psy6978 59 DYIAGGSTQNTLRVAQVKPVQM-KSQISLRVQEEVKPVQMKSQISLR 104 (112)
Q Consensus 59 ~~~~GGSA~NTir~~a~Lg~~~-~~~~~fg~~~~~~~~~~~~~~~~~ 104 (112)
....|||+..++..+...|.++ +...++--.+.-+..+.+.|+..+
T Consensus 113 vi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~ 159 (170)
T PRK13811 113 VTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLT 159 (170)
T ss_pred cccccHHHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEE
Confidence 3468999999999999999874 455666656666777777777653
No 75
>PRK09810 entericidin A; Provisional
Probab=26.74 E-value=20 Score=21.40 Aligned_cols=10 Identities=30% Similarity=-0.070 Sum_probs=8.2
Q ss_pred hHHHHHHHHH
Q psy6978 64 GSTQNTLRVA 73 (112)
Q Consensus 64 GSA~NTir~~ 73 (112)
=|+|||+.++
T Consensus 16 L~aCNTv~G~ 25 (41)
T PRK09810 16 LTGCNTARGF 25 (41)
T ss_pred Hhhhhhcccc
Confidence 4689999886
No 76
>PRK14134 recX recombination regulator RecX; Provisional
Probab=26.61 E-value=78 Score=25.45 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=46.3
Q ss_pred eEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEeeccchhhhhhh
Q psy6978 19 ISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRVQEEVKPVQMK 98 (112)
Q Consensus 19 i~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~~~~~~~~~~~ 98 (112)
..+.|+.+.+-+|+|.+|. .|.+++..+|..+-.- -.|-| +|+.+|..++-+ .-|||.-+.+
T Consensus 26 ~af~v~~~~l~~~~L~kG~-eld~e~~~ei~~~~~~---------~~a~~--~AL~~Ls~r~rS------e~Elr~KL~~ 87 (283)
T PRK14134 26 FAFACSAELVYYHNLKKGK-VIDVNSLNDIIKEDNY---------IKCKG--YALKYIEKSYKT------EKQIKEKLYL 87 (283)
T ss_pred eEEEecHHHHHHhCCcCCC-CcCHHHHHHHHHHHHH---------HHHHH--HHHHHhccCcch------HHHHHHHHHh
Confidence 4578999999999999995 5777777777655320 02233 244455443322 3477777777
Q ss_pred hccceeeecce
Q psy6978 99 SQISLRVQEEV 109 (112)
Q Consensus 99 ~~~~~~~~~~~ 109 (112)
.|++..+.++|
T Consensus 88 k~~~~~~Ie~v 98 (283)
T PRK14134 88 KEYDEDAVNRV 98 (283)
T ss_pred CCCCHHHHHHH
Confidence 77766555554
No 77
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=26.19 E-value=2e+02 Score=19.00 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=18.1
Q ss_pred hCCCCeeecChHHHHHHHHHHhCC
Q psy6978 54 KNNNVDYIAGGSTQNTLRVAQVKP 77 (112)
Q Consensus 54 ~~~~~~~~~GGSA~NTir~~a~Lg 77 (112)
+.......+|||.+|.+...+...
T Consensus 16 ~~~~~~~~~~~t~a~~~~~~~~~~ 39 (170)
T cd01494 16 GNDKAVFVPSGTGANEAALLALLG 39 (170)
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCC
Confidence 344567888999999988777654
No 78
>COG4803 Predicted membrane protein [Function unknown]
Probab=26.17 E-value=1e+02 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.508 Sum_probs=31.2
Q ss_pred EecCceeeeEeecCHHHHHHcC--CCCCce---eeehH-HHHHHHHHHh
Q psy6978 11 GLGNPLLDISATVDASFLEKYN--LKANNA---ILADE-KHKDLYEDLI 53 (112)
Q Consensus 11 giGNpLvDi~a~Vdd~fL~~~g--L~kG~m---~L~de-~~~~L~~eL~ 53 (112)
+++-+|.|+- +||+|++..+ +++|++ .|+.+ .....++++.
T Consensus 91 Al~g~l~DvG--IdDdFik~l~~ti~pG~sALFvLi~k~t~DKVl~~~~ 137 (170)
T COG4803 91 ALSGSLTDVG--IDDDFIKELGETIQPGSSALFVLISKMTEDKVLADLS 137 (170)
T ss_pred hhccceeecC--cCHHHHHHHHhhcCCCCeEEEEEeeccchHHHHHHhh
Confidence 3566777754 5999999886 789987 56666 7888999984
No 79
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=26.14 E-value=35 Score=24.32 Aligned_cols=9 Identities=56% Similarity=0.907 Sum_probs=7.2
Q ss_pred EEEecCcee
Q psy6978 9 LLGLGNPLL 17 (112)
Q Consensus 9 IvgiGNpLv 17 (112)
|+|+||+|.
T Consensus 3 VlGiGN~l~ 11 (146)
T TIGR00142 3 LLCVGNELM 11 (146)
T ss_pred EEEeCcccc
Confidence 788999883
No 80
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=25.68 E-value=35 Score=24.14 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=11.1
Q ss_pred HHHhCCCCCCceeEEeec
Q psy6978 72 VAQVKPVQMKSQISLRVQ 89 (112)
Q Consensus 72 ~~a~Lg~~~~~~~~fg~~ 89 (112)
.++.++ .|....++|++
T Consensus 95 ~~~~~~-~~~~~~ivgi~ 111 (140)
T cd06070 95 LLKSSG-RRPKAYIVGVK 111 (140)
T ss_pred HHHHcC-CCCeEEEEEEe
Confidence 344455 66678888884
No 81
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=24.37 E-value=2.8e+02 Score=22.31 Aligned_cols=36 Identities=8% Similarity=0.162 Sum_probs=25.6
Q ss_pred HHHHHHHHhhCCC-CeeecChHHHHHHHHHHhCCCCC
Q psy6978 45 HKDLYEDLIKNNN-VDYIAGGSTQNTLRVAQVKPVQM 80 (112)
Q Consensus 45 ~~~L~~eL~~~~~-~~~~~GGSA~NTir~~a~Lg~~~ 80 (112)
-.++++.+.++.+ +.-+.|||+..++++++++.+.|
T Consensus 70 v~~~~~~~~~~~d~IIaIGGGs~~D~aK~vA~~~~~p 106 (348)
T cd08175 70 VGRVLKELERDTDLIIAVGSGTINDITKYVSYKTGIP 106 (348)
T ss_pred HHHHHHHhhccCCEEEEECCcHHHHHHHHHHHhcCCC
Confidence 4455555533333 46689999999999999987766
No 82
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=24.36 E-value=41 Score=23.56 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCCCCceeEEeecc
Q psy6978 66 TQNTLRVAQVKPVQMKSQISLRVQE 90 (112)
Q Consensus 66 A~NTir~~a~Lg~~~~~~~~fg~~~ 90 (112)
-..++..+..++..|....++|++-
T Consensus 91 l~~~l~~~~~~~~~~~~~~lvgi~~ 115 (139)
T cd00518 91 LAELLALLRLLGGLPPEVVLIGIQP 115 (139)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEEEe
Confidence 3556666667776777788888843
No 83
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=24.02 E-value=1.7e+02 Score=24.33 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=43.4
Q ss_pred ccEEEecCceeeeE--------eecC----HHHHHHcCCCCCceeee-hH--HHHHHHHHHhhCCCCeeecChHHH----
Q psy6978 7 GLLLGLGNPLLDIS--------ATVD----ASFLEKYNLKANNAILA-DE--KHKDLYEDLIKNNNVDYIAGGSTQ---- 67 (112)
Q Consensus 7 ~~IvgiGNpLvDi~--------a~Vd----d~fL~~~gL~kG~m~L~-de--~~~~L~~eL~~~~~~~~~~GGSA~---- 67 (112)
.-|+..||-|++.- ...+ .++|+++|.+.-...++ |+ ...+-+.++.+..+...+.||+..
T Consensus 171 v~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s~g~~D 250 (394)
T cd00887 171 VAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVSVGDYD 250 (394)
T ss_pred EEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCCcch
Confidence 34677788888432 1111 25688898877666444 43 334444444444677888899863
Q ss_pred HHHHHHHhCCC
Q psy6978 68 NTLRVAQVKPV 78 (112)
Q Consensus 68 NTir~~a~Lg~ 78 (112)
.|-.++..+|.
T Consensus 251 ~~~~al~~~g~ 261 (394)
T cd00887 251 FVKEVLEELGG 261 (394)
T ss_pred hHHHHHHhCCC
Confidence 56667777753
No 84
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=23.85 E-value=42 Score=23.89 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=10.6
Q ss_pred HhCCCCCCceeEEeecc
Q psy6978 74 QVKPVQMKSQISLRVQE 90 (112)
Q Consensus 74 a~Lg~~~~~~~~fg~~~ 90 (112)
..++..|....+.|++.
T Consensus 102 ~~~~~~~~~v~ivgie~ 118 (146)
T cd06062 102 ELLGDLPPEIVLIGVQP 118 (146)
T ss_pred HHcCCCCCeEEEEEEEE
Confidence 34555566777778743
No 85
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=23.81 E-value=1.2e+02 Score=23.97 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCC-CCeeecChHHHHHHHHHHhCCCCCC
Q psy6978 44 KHKDLYEDLIKNN-NVDYIAGGSTQNTLRVAQVKPVQMK 81 (112)
Q Consensus 44 ~~~~L~~eL~~~~-~~~~~~GGSA~NTir~~a~Lg~~~~ 81 (112)
....++.+..+.. .....+|||..|+.+++++.+..-+
T Consensus 43 ~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G 81 (311)
T TIGR01275 43 KLEYLLADALSKGADTVITVGAIQSNHARATALAAKKLG 81 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhC
Confidence 4455555554332 3456789999999999999876543
No 86
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=23.62 E-value=94 Score=26.44 Aligned_cols=81 Identities=10% Similarity=0.166 Sum_probs=47.6
Q ss_pred cEEEecCceeeeE--------eecC----HHHHHHcCCCCCceeee-hH--HHHHHHHHHhhCCCCeeecChHHHH----
Q psy6978 8 LLLGLGNPLLDIS--------ATVD----ASFLEKYNLKANNAILA-DE--KHKDLYEDLIKNNNVDYIAGGSTQN---- 68 (112)
Q Consensus 8 ~IvgiGNpLvDi~--------a~Vd----d~fL~~~gL~kG~m~L~-de--~~~~L~~eL~~~~~~~~~~GGSA~N---- 68 (112)
-|+..|+.|++.- ...+ .+.|+++|.+.-...++ |+ ...+.+.++.+..+...+.||+..-
T Consensus 197 ~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S~G~~D~ 276 (419)
T PRK14690 197 AVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGASAGDEDH 276 (419)
T ss_pred EEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCccCCCcch
Confidence 4777888888531 1111 24688999887666444 43 2344444443445677888988764
Q ss_pred HHHHHHhCCC--------CCCceeEEee
Q psy6978 69 TLRVAQVKPV--------QMKSQISLRV 88 (112)
Q Consensus 69 Tir~~a~Lg~--------~~~~~~~fg~ 88 (112)
+-.++..+|. +|+..++||.
T Consensus 277 v~~~l~~~G~~~~~~v~mkPGkp~~~~~ 304 (419)
T PRK14690 277 VSALLREAGAMQSWRIALKPGRPLALGL 304 (419)
T ss_pred HHHHHHhcCCEEEcceeecCCCceEEEE
Confidence 4556665542 4565555554
No 87
>cd06066 H2MP_NAD-link-bidir Endopeptidases that belong to the bidirectional NAD-linked hydrogenase group. This group of endopeptidases are highly specific carboxyl-terminal protease (HoxW protease) which releases a 24-amino-acid peptide from HoxH prior to progression of subunit assembly. These bidirectional hydrogenases are heteropentamers encoded by the hox (hydrogen oxidation) genes, in which complex HoxEFU shows the diaphorase activity, and HoxYH constitutes the NiFe-hydrogenase.
Probab=23.29 E-value=44 Score=23.61 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=21.2
Q ss_pred HHHHHHhCCCCCCceeEEeeccchhhhhhhhccceeee
Q psy6978 69 TLRVAQVKPVQMKSQISLRVQEEVKPVQMKSQISLRVQ 106 (112)
Q Consensus 69 Tir~~a~Lg~~~~~~~~fg~~~~~~~~~~~~~~~~~~~ 106 (112)
++..+++++..|....+.|++.+ .+-...++|-.+|
T Consensus 90 ~l~~~~~l~~~~~~~~i~gi~~~--~~~~g~~LS~~v~ 125 (139)
T cd06066 90 LLALAQALYGHAPPAWLLTIPGY--NFELGEPLSPAAE 125 (139)
T ss_pred HHHHHHHhcCCCCCEEEEEeecc--cCccCCCCCHHHH
Confidence 55556677777778888888543 3334444444433
No 88
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=22.89 E-value=49 Score=24.27 Aligned_cols=29 Identities=14% Similarity=0.473 Sum_probs=24.0
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCC
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKA 35 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~k 35 (112)
.-|+|.|-+|+-.+..-|++++.+|+=+-
T Consensus 16 ~~ii~~G~~l~~y~tPTeEeL~~r~sPEL 44 (128)
T PF07960_consen 16 AVIIGGGPALVKYTTPTEEELFKRYSPEL 44 (128)
T ss_pred ceeEeechHHheecCCCHHHHHHhcCHHH
Confidence 35788889999988889999999998543
No 89
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=22.64 E-value=43 Score=23.73 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=13.4
Q ss_pred HHHHHHhCCCCCCceeEEeec
Q psy6978 69 TLRVAQVKPVQMKSQISLRVQ 89 (112)
Q Consensus 69 Tir~~a~Lg~~~~~~~~fg~~ 89 (112)
++..+..++..|....++|++
T Consensus 96 ~l~~~~~~g~~p~~~~lvgi~ 116 (145)
T TIGR00072 96 VLALLELLGALPPEVVLLGIQ 116 (145)
T ss_pred HHHHHHHcCCCCCeEEEEEEE
Confidence 444444456667778888883
No 90
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=22.49 E-value=47 Score=23.69 Aligned_cols=9 Identities=33% Similarity=0.504 Sum_probs=7.3
Q ss_pred EEEecCcee
Q psy6978 9 LLGLGNPLL 17 (112)
Q Consensus 9 IvgiGNpLv 17 (112)
|+|+||+|.
T Consensus 3 VlGiGN~L~ 11 (146)
T cd06063 3 IIGCGNLNR 11 (146)
T ss_pred EEEECCccc
Confidence 788999874
No 91
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=22.23 E-value=46 Score=24.16 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=8.4
Q ss_pred ccEEEecCce
Q psy6978 7 GLLLGLGNPL 16 (112)
Q Consensus 7 ~~IvgiGNpL 16 (112)
.-|+|+||+|
T Consensus 3 ~lVlGiGN~L 12 (156)
T PRK11544 3 DVVLTVGNSM 12 (156)
T ss_pred EEEEEeCccc
Confidence 3589999998
No 92
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=22.07 E-value=41 Score=24.15 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=18.5
Q ss_pred ccchhhhhhhhccceeeeccee
Q psy6978 89 QEEVKPVQMKSQISLRVQEEVL 110 (112)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~ 110 (112)
..++++++...||+.++++..+
T Consensus 29 v~~l~~~L~~~Giev~l~~~~l 50 (120)
T PF10865_consen 29 VKELAPVLAPLGIEVRLEEIEL 50 (120)
T ss_pred HHHHHHHHHhCCcEEEEEEEEC
Confidence 4678999999999999987643
No 93
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=21.95 E-value=40 Score=20.59 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=13.4
Q ss_pred ccchhhhhhhhccceeeecce
Q psy6978 89 QEEVKPVQMKSQISLRVQEEV 109 (112)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ 109 (112)
++-+|.++++.||...++.+-
T Consensus 12 a~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 12 AELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp HHHHHHHHHHTT--EE--S--
T ss_pred HHHHHHHHHhCCCcEEEECCc
Confidence 677899999999999998763
No 94
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=21.88 E-value=1.1e+02 Score=18.11 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.9
Q ss_pred eeEeecCHHHHHHcCCCCCce
Q psy6978 18 DISATVDASFLEKYNLKANNA 38 (112)
Q Consensus 18 Di~a~Vdd~fL~~~gL~kG~m 38 (112)
++.+.++.+..++++|.+|+.
T Consensus 32 ~l~a~it~~~~~~L~L~~G~~ 52 (64)
T PF03459_consen 32 TLTARITPESAEELGLKPGDE 52 (64)
T ss_dssp EEEEEEEHHHHHHCT-STT-E
T ss_pred EEEEEEcHHHHHHcCCCCCCE
Confidence 889999999999999999987
No 95
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=21.36 E-value=53 Score=24.39 Aligned_cols=12 Identities=50% Similarity=0.825 Sum_probs=9.5
Q ss_pred cccEEEecCcee
Q psy6978 6 EGLLLGLGNPLL 17 (112)
Q Consensus 6 ~~~IvgiGNpLv 17 (112)
+..|+|+||+|.
T Consensus 3 ~ilIlG~GN~L~ 14 (160)
T COG0680 3 RILILGVGNILM 14 (160)
T ss_pred eEEEEeeCCccc
Confidence 456899999985
No 96
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=20.81 E-value=2.1e+02 Score=25.70 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=58.6
Q ss_pred ecCHH-HHHHcCCCC-CceeeehH-HHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC-CceeEEeeccchhhhhh
Q psy6978 22 TVDAS-FLEKYNLKA-NNAILADE-KHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM-KSQISLRVQEEVKPVQM 97 (112)
Q Consensus 22 ~Vdd~-fL~~~gL~k-G~m~L~de-~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~-~~~~~fg~~~~~~~~~~ 97 (112)
+||.+ +++++++.. -...+... -+.+|++...........|.|.=-.+++++..+..+. ...+++|=.+++++++.
T Consensus 340 ~vD~~~l~~~l~~~~~~~~~~~p~~~~~~l~~~a~~~~~~i~~~e~~d~~~l~Aa~~~~~~g~~~~iLvG~~~~I~~~~~ 419 (684)
T PRK05632 340 HVDTDELLERLTATSERSRRLSPPAFRYQLTERARAAKKRIVLPEGDEPRTLKAAAICLERGIADCVLLGNPEEIRRVAA 419 (684)
T ss_pred hCCHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHcCCceEEEECCHHHHHHHHH
Confidence 45664 777777633 12233333 5778888876555567889999999999988765543 35688999999999999
Q ss_pred hhccce
Q psy6978 98 KSQISL 103 (112)
Q Consensus 98 ~~~~~~ 103 (112)
+.|++.
T Consensus 420 ~~~~~l 425 (684)
T PRK05632 420 AQGVDL 425 (684)
T ss_pred HcCCCc
Confidence 988754
No 97
>PRK01215 competence damage-inducible protein A; Provisional
Probab=20.68 E-value=2.3e+02 Score=22.55 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=43.4
Q ss_pred CCcccEEEecCceeeeEee-cCH----HHHHHcCCCCCceeee-hH--HHHHHHHHHhhCCCCeeecChHHH----HHHH
Q psy6978 4 VREGLLLGLGNPLLDISAT-VDA----SFLEKYNLKANNAILA-DE--KHKDLYEDLIKNNNVDYIAGGSTQ----NTLR 71 (112)
Q Consensus 4 m~~~~IvgiGNpLvDi~a~-Vdd----~fL~~~gL~kG~m~L~-de--~~~~L~~eL~~~~~~~~~~GGSA~----NTir 71 (112)
+++..|+.+|+.|+.=... .+- ..|.++|.+.-...++ |+ ...+.+.++.+..+...+.||... -|..
T Consensus 3 ~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t~dD~t~e 82 (264)
T PRK01215 3 KWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPTYDDKTNE 82 (264)
T ss_pred CCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCChhhhHHH
Confidence 3456689999998743322 112 3477789887766444 43 234555555455577888898654 3444
Q ss_pred HHHhC
Q psy6978 72 VAQVK 76 (112)
Q Consensus 72 ~~a~L 76 (112)
+++..
T Consensus 83 aia~~ 87 (264)
T PRK01215 83 GFAKA 87 (264)
T ss_pred HHHHH
Confidence 54444
No 98
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=20.55 E-value=53 Score=23.97 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=12.4
Q ss_pred HHHHHhCCCCCCceeEEee
Q psy6978 70 LRVAQVKPVQMKSQISLRV 88 (112)
Q Consensus 70 ir~~a~Lg~~~~~~~~fg~ 88 (112)
+..+..++..|....++|+
T Consensus 101 L~~~~~~g~~p~~v~lvgi 119 (164)
T PRK10466 101 LSALRFTGEFPKKLTLVGV 119 (164)
T ss_pred HHHHHHcCCCCCeEEEEEE
Confidence 3334455666777888888
No 99
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=20.52 E-value=58 Score=22.39 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=21.2
Q ss_pred CCCCCceeEEee--ccchhhhhhhhccce
Q psy6978 77 PVQMKSQISLRV--QEEVKPVQMKSQISL 103 (112)
Q Consensus 77 g~~~~~~~~fg~--~~~~~~~~~~~~~~~ 103 (112)
..+|++.+|||- .||++...++.+++.
T Consensus 32 ~~~~~p~~~iG~GK~eei~~~~~~~~~d~ 60 (95)
T PF13167_consen 32 RRKPDPKTYIGSGKVEEIKELIEELDADL 60 (95)
T ss_pred CCCCCcceeechhHHHHHHHHHhhcCCCE
Confidence 346889999988 788888888777654
No 100
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=20.19 E-value=1.4e+02 Score=17.12 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=16.4
Q ss_pred EeecCHHHHHHcCCCCCceee
Q psy6978 20 SATVDASFLEKYNLKANNAIL 40 (112)
Q Consensus 20 ~a~Vdd~fL~~~gL~kG~m~L 40 (112)
.+.+..++.+++++++|+...
T Consensus 8 ~v~iPk~~~~~l~l~~Gd~v~ 28 (47)
T PF04014_consen 8 QVTIPKEIREKLGLKPGDEVE 28 (47)
T ss_dssp EEEE-HHHHHHTTSSTTTEEE
T ss_pred eEECCHHHHHHcCCCCCCEEE
Confidence 356788999999999999843
No 101
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=20.17 E-value=1e+02 Score=22.08 Aligned_cols=29 Identities=21% Similarity=-0.002 Sum_probs=20.4
Q ss_pred eeecChHHHHHHHHHHhCCCCCCceeEEee
Q psy6978 59 DYIAGGSTQNTLRVAQVKPVQMKSQISLRV 88 (112)
Q Consensus 59 ~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~ 88 (112)
...+|||.+|++..++...+. +.-.++|+
T Consensus 135 ~~~~g~sV~~~a~~lA~~lG~-~~I~L~G~ 163 (170)
T PF01973_consen 135 ILYSGGSVANTALQLAYYLGF-KPIYLIGQ 163 (170)
T ss_pred cCCCCccHHHHHHHHHHHHCC-CcEEEEee
Confidence 456899999999988855552 34555564
Done!