Query psy6978
Match_columns 112
No_of_seqs 107 out of 616
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 23:39:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uq6_A Adenosine kinase, putat 99.9 6.6E-27 2.3E-31 185.9 8.9 105 1-105 21-131 (372)
2 3loo_A Anopheles gambiae adeno 99.8 7.7E-20 2.6E-24 144.6 8.8 105 1-105 18-128 (365)
3 3otx_A Adenosine kinase, putat 99.8 9.1E-19 3.1E-23 136.5 10.1 102 5-106 6-115 (347)
4 3vas_A Putative adenosine kina 99.8 1.2E-18 4.1E-23 138.4 9.3 105 1-105 19-129 (370)
5 4e3a_A Sugar kinase protein; s 99.8 1.9E-18 6.6E-23 136.4 10.0 98 2-105 21-125 (352)
6 1bx4_A Protein (adenosine kina 99.5 6.7E-14 2.3E-18 108.7 9.7 105 1-105 1-112 (345)
7 2abs_A Adenosine kinase, AK; r 99.3 4.7E-12 1.6E-16 100.3 7.3 99 6-105 32-136 (383)
8 2hlz_A Ketohexokinase; non-pro 98.4 3.3E-07 1.1E-11 70.4 6.0 79 3-104 14-98 (312)
9 1rkd_A Ribokinase; carbohydrat 98.4 4.6E-07 1.6E-11 68.9 6.1 75 7-104 5-85 (309)
10 2f02_A Tagatose-6-phosphate ki 98.4 1E-06 3.5E-11 67.8 7.5 73 8-104 4-81 (323)
11 3h49_A Ribokinase; transferase 98.4 6.8E-07 2.3E-11 68.8 6.4 79 3-104 2-87 (325)
12 2pkf_A Adenosine kinase; trans 98.3 5.7E-07 2E-11 69.8 5.7 83 8-104 12-99 (334)
13 2c4e_A Sugar kinase MJ0406; tr 98.3 1.4E-06 4.8E-11 66.3 7.0 74 8-104 7-86 (302)
14 3ikh_A Carbohydrate kinase; tr 98.3 1.5E-06 5.2E-11 66.3 7.0 76 7-105 3-84 (299)
15 3bf5_A Ribokinase related prot 98.3 1.8E-06 6.3E-11 66.4 7.0 76 5-104 19-99 (306)
16 3go6_A Ribokinase RBSK; phosph 98.3 1.4E-06 4.9E-11 67.2 6.3 75 7-104 20-100 (310)
17 2rbc_A Sugar kinase, AGR_C_456 98.3 1.2E-06 4.1E-11 68.6 5.9 76 6-104 29-110 (343)
18 3b1n_A Ribokinase, putative; r 98.3 1.9E-06 6.6E-11 66.7 6.9 84 8-104 2-90 (326)
19 2fv7_A Ribokinase; structural 98.2 1.5E-06 5.3E-11 67.1 6.1 74 7-104 25-105 (331)
20 1tyy_A Putative sugar kinase; 98.2 1.5E-06 5.3E-11 67.6 5.9 64 7-104 25-94 (339)
21 2jg1_A Tagatose-6-phosphate ki 98.2 4E-06 1.4E-10 64.9 7.4 73 8-104 22-99 (330)
22 3pl2_A Sugar kinase, ribokinas 98.2 2.2E-06 7.5E-11 65.4 5.8 75 3-104 5-85 (319)
23 3kzh_A Probable sugar kinase; 98.2 2.5E-06 8.5E-11 65.7 6.0 80 1-104 1-86 (328)
24 3ry7_A Ribokinase; transferase 98.2 4.8E-06 1.6E-10 63.0 7.2 74 8-104 4-84 (304)
25 4du5_A PFKB; structural genomi 98.2 2.3E-06 8E-11 66.4 5.4 75 2-104 21-102 (336)
26 3cqd_A 6-phosphofructokinase i 98.1 8.9E-06 3E-10 61.7 8.1 73 8-104 3-81 (309)
27 2ajr_A Sugar kinase, PFKB fami 98.1 6.5E-06 2.2E-10 63.6 7.4 78 6-104 12-96 (331)
28 2nwh_A AGR_C_3442P, carbohydra 98.1 5E-06 1.7E-10 63.8 6.6 74 8-105 5-84 (317)
29 2qcv_A Putative 5-dehydro-2-de 98.1 9.2E-06 3.1E-10 62.2 7.2 75 3-104 8-88 (332)
30 3lhx_A Ketodeoxygluconokinase; 98.0 8E-06 2.7E-10 62.5 5.3 66 7-104 5-77 (319)
31 2dcn_A Hypothetical fructokina 98.0 8E-06 2.7E-10 62.1 5.1 69 8-104 3-77 (311)
32 3ljs_A Fructokinase; fructokia 98.0 1.1E-05 3.7E-10 62.2 5.7 71 6-104 4-80 (338)
33 2abq_A Fructose 1-phosphate ki 97.9 2.2E-05 7.7E-10 59.6 7.2 72 9-104 3-79 (306)
34 3hj6_A Fructokinase, FRK; fruc 97.9 7.8E-06 2.7E-10 62.9 4.6 72 6-104 21-98 (327)
35 1vm7_A Ribokinase; TM0960, str 97.9 1.4E-05 4.7E-10 61.4 5.9 72 7-101 15-93 (311)
36 3umo_A 6-phosphofructokinase i 97.9 4.7E-05 1.6E-09 57.7 8.0 72 9-104 4-81 (309)
37 2qhp_A Fructokinase; NP_810670 97.8 3.8E-05 1.3E-09 57.7 6.9 59 8-106 5-69 (296)
38 3ewm_A Uncharacterized sugar k 97.8 1.8E-05 6.2E-10 60.4 4.9 69 8-104 3-77 (313)
39 2jg5_A Fructose 1-phosphate ki 97.8 4.5E-05 1.6E-09 57.6 6.8 72 9-104 3-79 (306)
40 3iq0_A Putative ribokinase II; 97.8 2E-05 6.8E-10 60.7 4.8 72 7-104 4-81 (330)
41 3ktn_A Carbohydrate kinase, PF 97.8 2.7E-05 9.3E-10 60.0 5.4 69 8-104 4-78 (346)
42 2v78_A Fructokinase; transfera 97.8 3.1E-05 1E-09 59.0 5.6 69 8-104 3-77 (313)
43 3ie7_A LIN2199 protein; phosph 97.7 5.2E-05 1.8E-09 57.9 6.0 72 9-104 5-82 (320)
44 4e69_A 2-dehydro-3-deoxyglucon 97.7 3.9E-05 1.3E-09 59.4 5.2 64 8-104 25-96 (328)
45 1v1a_A 2-keto-3-deoxygluconate 97.7 3.8E-05 1.3E-09 58.3 4.8 69 8-104 3-77 (309)
46 4gm6_A PFKB family carbohydrat 97.5 9.4E-05 3.2E-09 57.1 4.9 68 8-103 26-99 (351)
47 4e84_A D-beta-D-heptose 7-phos 97.4 0.00022 7.6E-09 56.0 5.7 81 4-106 51-139 (352)
48 3kd6_A Carbohydrate kinase, PF 97.2 0.00042 1.4E-08 53.0 4.6 64 8-104 4-72 (313)
49 2afb_A 2-keto-3-deoxygluconate 96.2 0.0037 1.3E-07 48.2 3.8 71 6-104 12-88 (351)
50 1vk4_A PFKB carbohydrate kinas 96.0 0.0081 2.8E-07 45.4 5.0 63 7-104 12-78 (298)
51 3zxn_A RSBS, anti-sigma-factor 41.1 22 0.00075 23.5 3.0 41 62-105 60-100 (123)
52 1mvf_D MAZE protein, PEMI-like 40.3 34 0.0011 21.1 3.6 29 7-38 4-32 (82)
53 3noy_A 4-hydroxy-3-methylbut-2 33.0 17 0.00057 29.8 1.5 67 22-90 144-213 (366)
54 1ua4_A Glucokinase, ADP-depend 30.5 87 0.003 25.9 5.5 83 10-98 25-146 (455)
55 1j0a_A 1-aminocyclopropane-1-c 29.1 17 0.00058 27.7 0.9 38 44-81 57-95 (325)
56 3d5l_A Regulatory protein RECX 27.5 71 0.0024 23.3 4.1 68 18-103 25-92 (221)
57 2e85_A Hydrogenase 3 maturatio 24.7 29 0.00099 24.3 1.4 14 3-17 3-16 (159)
58 1gc5_A ADP-dependent glucokina 23.1 1.7E+02 0.0057 24.3 6.0 81 10-97 33-153 (467)
59 1j3m_A The conserved hypotheti 22.8 31 0.0011 22.9 1.2 15 3-17 47-61 (129)
60 3pu6_A Uncharacterized protein 22.8 31 0.0011 24.1 1.3 12 6-17 4-15 (157)
61 4hoy_A PTH, peptidyl-tRNA hydr 22.5 31 0.0011 25.4 1.3 7 9-15 7-13 (193)
No 1
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*
Probab=99.94 E-value=6.6e-27 Score=185.87 Aligned_cols=105 Identities=34% Similarity=0.530 Sum_probs=96.3
Q ss_pred CCCCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC
Q psy6978 1 MADVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM 80 (112)
Q Consensus 1 ~~~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~ 80 (112)
|++++++.|+||||||||++++|||+||++|+|+||+|+|+++++.++|.++.+..+.++.||||++||+++++|||.++
T Consensus 21 ~~~~~~~~v~giGnalvDi~~~v~d~~l~~~~l~kg~m~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~LG~~~ 100 (372)
T 3uq6_A 21 MHDLSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKP 100 (372)
T ss_dssp --CCCTTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTTHHHHHHTSSSCEEEECCHHHHHHHHHHHHHCST
T ss_pred ccCCCCCeEEEECCceeeEEEEeCHHHHHHcCCCCCceEEcCHHHHHHHHHHhccCCeEEeCCcHHHHHHHHHHHcCCCC
Confidence 45667788999999999999999999999999999999999999999999998888889999999999999999999988
Q ss_pred CceeEEee------ccchhhhhhhhccceee
Q psy6978 81 KSQISLRV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 81 ~~~~~fg~------~~~~~~~~~~~~~~~~~ 105 (112)
..+.|+|. ++.++.-+++.||..+.
T Consensus 101 ~~~~fiG~VG~D~~G~~l~~~L~~~GV~~~~ 131 (372)
T 3uq6_A 101 FVCSYVGCIGADIQGKYIKNDCSALDLVTEF 131 (372)
T ss_dssp TSEEEEEEECSSHHHHHHHHHHHHTTCEECC
T ss_pred CcEEEEeeecCCHHHHHHHHHHHHcCCCcee
Confidence 89999996 77899999999997654
No 2
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=7.7e-20 Score=144.60 Aligned_cols=105 Identities=43% Similarity=0.717 Sum_probs=90.7
Q ss_pred CCCCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC
Q psy6978 1 MADVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM 80 (112)
Q Consensus 1 ~~~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~ 80 (112)
|+.|++++|+++|||++|+++.||++||++|+++||+|+++++++.+++.++.......+.+||+++|+++++++|+...
T Consensus 18 ~~~~~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~e~~~~~~~~~~~GG~~~N~a~~~~~L~~lG 97 (365)
T 3loo_A 18 MESLRDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRP 97 (365)
T ss_dssp ---CCTTSEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGTHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHTCT
T ss_pred cccCCCccEEEECCCeEeEEEecCHHHHHHcCCCCCCceechhHHHHHHHHHhhcCCeEEecCCHHHHHHHHHHHhhcCC
Confidence 56788899999999999999999999999999999999998889999999997655778899999999999999985434
Q ss_pred CceeEEee------ccchhhhhhhhccceee
Q psy6978 81 KSQISLRV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 81 ~~~~~fg~------~~~~~~~~~~~~~~~~~ 105 (112)
..+.|+|. .+.++.-+++.||..+.
T Consensus 98 ~~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~ 128 (365)
T 3loo_A 98 RTAIFFGCVGQDEYARILEERATSNGVNVQY 128 (365)
T ss_dssp TSEEEEEEEESBHHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEEecCCchHHHHHHHHHHCCCceec
Confidence 47888887 56789999999998764
No 3
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Probab=99.78 E-value=9.1e-19 Score=136.55 Aligned_cols=102 Identities=33% Similarity=0.431 Sum_probs=89.7
Q ss_pred CcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC-Cc-
Q psy6978 5 REGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM-KS- 82 (112)
Q Consensus 5 ~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~-~~- 82 (112)
++++|+++|||++|+++.||++||++|+++||+|+|++++|.+++.++.........+||+++|+++++++|+..| ..
T Consensus 6 ~~~~v~~iG~~~lD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~~~~~~~~~~~~~GG~~~N~a~~la~L~~~~G~~~ 85 (347)
T 3otx_A 6 APLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLNVARVAQWMQQAYKGKF 85 (347)
T ss_dssp CCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGTTHHHHHHTSTTCEEEECCHHHHHHHHHHHTTGGGTTSS
T ss_pred CCCcEEEECCceeeEEEecCHHHHHHcCCCCCceEEcCHHHHHHHHHHhccCCeEEecCCHHHHHHHHHHHhcccCCCCe
Confidence 3678999999999999999999999999999999999999999999997666778999999999999999994321 26
Q ss_pred eeEEee------ccchhhhhhhhccceeee
Q psy6978 83 QISLRV------QEEVKPVQMKSQISLRVQ 106 (112)
Q Consensus 83 ~~~fg~------~~~~~~~~~~~~~~~~~~ 106 (112)
+.|+|. .+.++.-+++.||..+..
T Consensus 86 ~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~ 115 (347)
T 3otx_A 86 VTYVGCIADDRYGKVLKEAAEHEGIVMAVE 115 (347)
T ss_dssp EEEECEECSSHHHHHHHHHHHHHTCEECCE
T ss_pred EEEEEEecCChHHHHHHHHHHHCCCceecc
Confidence 889988 677889999999987653
No 4
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*
Probab=99.77 E-value=1.2e-18 Score=138.44 Aligned_cols=105 Identities=33% Similarity=0.512 Sum_probs=91.6
Q ss_pred CCCCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC
Q psy6978 1 MADVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM 80 (112)
Q Consensus 1 ~~~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~ 80 (112)
|+.|++++|+++|||++|+++.||++||++|+++||+|+++++++.+++.+..........+||+++|+++++++|++..
T Consensus 19 ~~~m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~P~~ge~~~~~~~~~~~GG~~~N~A~~la~L~~~G 98 (370)
T 3vas_A 19 SHDLSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKP 98 (370)
T ss_dssp --CCCTTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTHHHHHHTTSSSCEEEEECHHHHHHHHHHHHHCCT
T ss_pred ccccCCccEEEECCcceeEEEecCHHHHHHcCCCCCceEEccHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHHHhcCCC
Confidence 35678899999999999999999999999999999999999999999999987666778899999999999999993222
Q ss_pred CceeEEee------ccchhhhhhhhccceee
Q psy6978 81 KSQISLRV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 81 ~~~~~fg~------~~~~~~~~~~~~~~~~~ 105 (112)
..+.|+|. ++.++.-+++.||..+.
T Consensus 99 ~~~~~ig~vG~D~~G~~~~~~L~~~GV~~~~ 129 (370)
T 3vas_A 99 FVCSYVGCIGADIQGKYIKNDCSALDLVTEF 129 (370)
T ss_dssp TCEEEEEEECSSHHHHHHHHHHHHTTCEECC
T ss_pred CcEEEEEEEcCChhHHHHHHHHHHcCCcccc
Confidence 37899988 67799999999998754
No 5
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=99.76 E-value=1.9e-18 Score=136.45 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=87.3
Q ss_pred CCCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehH-HHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC
Q psy6978 2 ADVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADE-KHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM 80 (112)
Q Consensus 2 ~~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de-~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~ 80 (112)
+.|++++|+++|||++|+++++|++||++++++||+|+++++ ++..||+++. +....+||+++|+++++++||.
T Consensus 21 ~~m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~li~~~~~~~l~~~~~---~~~~~~GG~~~N~A~~la~LG~-- 95 (352)
T 4e3a_A 21 QSMTRFDVLTVGNAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRMG---PALEASGGSAGNTAAGVANLGG-- 95 (352)
T ss_dssp --CCSEEEEEECCCEEEEEEECCHHHHHHTTCCTTSEEECCHHHHHHHHHHSC---SCEEEECCHHHHHHHHHHHHTC--
T ss_pred hHCCcccEEEECCceeeEEEecCHHHHHHcCCCCCcceEeCHHHHHHHHHHhh---hccEecCCHHHHHHHHHHHcCC--
Confidence 358889999999999999999999999999999999998876 8999999984 5577899999999999999998
Q ss_pred CceeEEee------ccchhhhhhhhccceee
Q psy6978 81 KSQISLRV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 81 ~~~~~fg~------~~~~~~~~~~~~~~~~~ 105 (112)
.+.|+|. ++.++.-+++.||..+.
T Consensus 96 -~~~~ig~vG~D~~G~~l~~~l~~~GV~~~~ 125 (352)
T 4e3a_A 96 -KAAYFGNVAADQLGDIFTHDIRAQGVHYQT 125 (352)
T ss_dssp -CEEEECCCCSSHHHHHHHHHHHHTTCEECC
T ss_pred -CeEEEEEECCChHHHHHHHHHHHcCCccce
Confidence 8899987 67789999999998664
No 6
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*
Probab=99.51 E-value=6.7e-14 Score=108.67 Aligned_cols=105 Identities=47% Similarity=0.733 Sum_probs=88.3
Q ss_pred CCCCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC
Q psy6978 1 MADVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM 80 (112)
Q Consensus 1 ~~~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~ 80 (112)
|..|++.+|+++||+++|+++.++++++++|++++|.++++++++.+...+..........+||+++|+++++++||+.+
T Consensus 1 ~~~~~~~~v~viG~~~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~lgg~~ 80 (345)
T 1bx4_A 1 MTSVRENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQNSIKVAQWMIQQP 80 (345)
T ss_dssp ---CCTTCEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGHHHHHHHHHHSCCEEEEECHHHHHHHHHHHHHCSS
T ss_pred CCCCccccEEEECCcceeEEEecCHHHHHHcCCCCCcEEEchHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHhcCCC
Confidence 55556678999999999999999999999999999999998877888888776555678889999999999999997544
Q ss_pred -CceeEEee------ccchhhhhhhhccceee
Q psy6978 81 -KSQISLRV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 81 -~~~~~fg~------~~~~~~~~~~~~~~~~~ 105 (112)
..+.|+|. .+.++.-+++.||..+.
T Consensus 81 ~~~~~~ig~vG~D~~G~~i~~~L~~~gv~~~~ 112 (345)
T 1bx4_A 81 HKAATFFGCIGIDKFGEILKRKAAEAHVDAHY 112 (345)
T ss_dssp TTCEEEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEEEeCCChhHHHHHHHHHHcCCceee
Confidence 58899987 57789999999997654
No 7
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*
Probab=99.29 E-value=4.7e-12 Score=100.30 Aligned_cols=99 Identities=29% Similarity=0.407 Sum_probs=84.5
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
+.+|+++||+++|+++.+++.|+++|++++|.+.++++++.+++.++ ........+||+++|+++++++|+.....+.|
T Consensus 32 ~~~vlviG~~~lD~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~-~~~~~~~~~GG~~~NvA~~la~Lg~~g~~v~~ 110 (383)
T 2abs_A 32 PMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTL-DQFNPTSLPGGSALNSVRVVQKLLRKPGSAGY 110 (383)
T ss_dssp CCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGGGGGGTG-GGGCCEEEEESHHHHHHHHHHHHHCSTTSEEE
T ss_pred CceEEEECcchheeEeccCHHHHHhcCCCCCceeechhhHHHHHHhh-ccccceeeCCChHHHHHHHHHHhccCCCcEEE
Confidence 45799999999999999998899999999999988877778888777 44566888999999999999999532237899
Q ss_pred Eee------ccchhhhhhhhccceee
Q psy6978 86 LRV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~~ 105 (112)
+|. .+.++.-+++.||..+.
T Consensus 111 ig~vG~D~~G~~i~~~L~~~GV~~~~ 136 (383)
T 2abs_A 111 MGAIGDDPRGQVLKELCDKEGLATRF 136 (383)
T ss_dssp EEEECSSHHHHHHHHHHHHHTCEEEE
T ss_pred EEEecCChhHHHHHHHHHHcCCceee
Confidence 997 67789999999998664
No 8
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=98.42 E-value=3.3e-07 Score=70.39 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=57.6
Q ss_pred CCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCc
Q psy6978 3 DVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKS 82 (112)
Q Consensus 3 ~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~ 82 (112)
+|++.+|+++|++++|++..++. + ..+|.... .......+||+++|+++++++||. .
T Consensus 14 ~~~~~~i~viG~~~iD~~~~~~~-----~-p~~~~~~~--------------~~~~~~~~GG~~~NvA~~la~LG~---~ 70 (312)
T 2hlz_A 14 VPRGSQILCVGLVVLDVISLVDK-----Y-PKEDSEIR--------------CLSQRWQRGGNASNSCTILSLLGA---P 70 (312)
T ss_dssp ---CCEEEEESCCEEEEEEEESS-----C-CCTTCEEE--------------CSEEEEEEESHHHHHHHHHHHHTC---C
T ss_pred CCCCCcEEEECcceEEEeecccc-----C-CCccceee--------------cccceeccCccHHHHHHHHHHcCC---c
Confidence 35566899999999999998863 1 12232211 112356799999999999999998 7
Q ss_pred eeEEee------ccchhhhhhhhcccee
Q psy6978 83 QISLRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 83 ~~~fg~------~~~~~~~~~~~~~~~~ 104 (112)
+.|+|. .+.++..+++.||..+
T Consensus 71 v~~ig~vG~D~~G~~l~~~L~~~GV~~~ 98 (312)
T 2hlz_A 71 CAFMGSMAPGHVADFVLDDLRRYSVDLR 98 (312)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTTCBCT
T ss_pred eEEEEEecCchHHHHHHHHHHHcCCCCc
Confidence 888876 5678889999999765
No 9
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=98.39 E-value=4.6e-07 Score=68.92 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=56.8
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
.+|+++|++++|++..++. +++.+..+ ........+||+++|+++++++||. .+.|+
T Consensus 5 ~~v~viG~~~iD~~~~~~~-------~p~~g~~~-------------~~~~~~~~~GG~~~N~A~~la~lG~---~~~~~ 61 (309)
T 1rkd_A 5 GSLVVLGSINADHILNLQS-------FPTPGETV-------------TGNHYQVAFGGKGANQAVAAGRSGA---NIAFI 61 (309)
T ss_dssp CEEEEECCCEEEEEEECSS-------CCCTTCCC-------------CCCCEEEEEECHHHHHHHHHHHHTC---EEEEE
T ss_pred CeEEEECcceEeEEEecCC-------CCCCCCee-------------ecCceeecCCCHHHHHHHHHHhCCC---ceEEE
Confidence 3699999999999999864 22221111 0113467799999999999999998 78888
Q ss_pred ee------ccchhhhhhhhcccee
Q psy6978 87 RV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 87 g~------~~~~~~~~~~~~~~~~ 104 (112)
|. .+.++.-+++.||..+
T Consensus 62 ~~vG~D~~g~~i~~~L~~~gv~~~ 85 (309)
T 1rkd_A 62 ACTGDDSIGESVRQQLATDNIDIT 85 (309)
T ss_dssp EEEESSTTHHHHHHHHHTTTEECT
T ss_pred EEECCCHHHHHHHHHHHHcCCCcc
Confidence 86 5678888889998765
No 10
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=98.36 E-value=1e-06 Score=67.81 Aligned_cols=73 Identities=25% Similarity=0.199 Sum_probs=59.2
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
.++++|||.+|+++.+|. +.+|....++ .....+||+++|+++++++||. .+.|+|
T Consensus 4 ~i~v~g~~~~D~~~~v~~-------~~~g~~~~~~--------------~~~~~~GG~~~NvA~~la~LG~---~~~~~~ 59 (323)
T 2f02_A 4 IVTVTMNPSIDISYLLDH-------LKLDTVNRTS--------------QVTKTPGGKGLNVTRVIHDLGG---DVIATG 59 (323)
T ss_dssp EEEEESSCEEEEEEECSC-------CCTTSEEEES--------------CEEEEEESHHHHHHHHHHHHTC---CEEEEE
T ss_pred EEEEecCceeEEEEecCC-------cccCCEEEec--------------eEEEcCCcHHHHHHHHHHHcCC---CeEEEE
Confidence 689999999999999974 3677664442 3356799999999999999998 677877
Q ss_pred e-----ccchhhhhhhhcccee
Q psy6978 88 V-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~-----~~~~~~~~~~~~~~~~ 104 (112)
. ++.++.-+++.||..+
T Consensus 60 ~vG~~~G~~i~~~L~~~gV~~~ 81 (323)
T 2f02_A 60 VLGGFHGAFIANELKKANIPQA 81 (323)
T ss_dssp EEEHHHHHHHHHHHHHTTCCBC
T ss_pred EeccchHHHHHHHHHHCCCcee
Confidence 6 5678888888998764
No 11
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=98.36 E-value=6.8e-07 Score=68.83 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=56.5
Q ss_pred CCCcccEEEecCceeeeEeecCHHHHHHcC-CCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCC
Q psy6978 3 DVREGLLLGLGNPLLDISATVDASFLEKYN-LKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMK 81 (112)
Q Consensus 3 ~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~g-L~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~ 81 (112)
.|++++|+++|.+++|+.....++.+.... .+. ......+||+++|++++++.||.
T Consensus 2 ~m~~~~v~~iG~~~~D~~~~~~~~~~~~~~~~p~--------------------~~~~~~~GG~~~NvA~~la~LG~--- 58 (325)
T 3h49_A 2 SLDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPL--------------------ERIAMTTGGDAINEATIISRLGH--- 58 (325)
T ss_dssp ---CEEEEEESCCEEEEEECSCCGGGGGSSCCCC--------------------SCCCCEEESHHHHHHHHHHHTTC---
T ss_pred CCCCCeEEEEChhhheeeccCCCCccccccccch--------------------heeEEccCcHHHHHHHHHHHCCC---
Confidence 467789999999999997654332211110 110 13356799999999999999999
Q ss_pred ceeEEee------ccchhhhhhhhcccee
Q psy6978 82 SQISLRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 82 ~~~~fg~------~~~~~~~~~~~~~~~~ 104 (112)
.+.|+|. ++.+++-+++.||..+
T Consensus 59 ~~~~ig~vG~D~~G~~i~~~L~~~gV~~~ 87 (325)
T 3h49_A 59 RTALMSRIGKDAAGQFILDHCRKENIDIQ 87 (325)
T ss_dssp EEEEECEEESSHHHHHHHHHHHHHTCBCS
T ss_pred CeEEEEEECCChHHHHHHHHHHHcCCcee
Confidence 7888887 6678899999999865
No 12
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=98.34 E-value=5.7e-07 Score=69.80 Aligned_cols=83 Identities=10% Similarity=-0.006 Sum_probs=59.5
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++||+++|++..++++|++.+- .+...-..+ +. ........+||+++|+++++++||. .+.|+|
T Consensus 12 ~i~v~G~~~~D~~~~~~~~~~~~~~--~~~~~~~~~-------~~-~~~~~~~~~GG~~~NvA~~la~LG~---~~~~i~ 78 (334)
T 2pkf_A 12 TIAVTGSIATDHLMRFPGRFSEQLL--PEHLHKVSL-------SF-LVDDLVMHRGGVAGNMAFAIGVLGG---EVALVG 78 (334)
T ss_dssp EEEEESCCEEEEEEECSSCTHHHHT--TSCGGGCCC-------CC-CCSEEEEEEECHHHHHHHHHHHTTC---EEEEEC
T ss_pred eEEEECChhheEEEecChHHhhhhc--hhhcccccc-------cc-ccccceecCCChHHHHHHHHHHcCC---CeEEEE
Confidence 6999999999999999888887663 221100000 00 0012356799999999999999998 788888
Q ss_pred e-----ccchhhhhhhhcccee
Q psy6978 88 V-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~-----~~~~~~~~~~~~~~~~ 104 (112)
. .+ ++.-+++.||..+
T Consensus 79 ~vG~D~g~-i~~~L~~~gV~~~ 99 (334)
T 2pkf_A 79 AAGADFAD-YRDWLKARGVNCD 99 (334)
T ss_dssp EECGGGHH-HHHHHHTTTEECT
T ss_pred EEeCchHH-HHHHHHHCCCcee
Confidence 7 34 7778888888754
No 13
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=98.30 E-value=1.4e-06 Score=66.27 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=56.1
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++++|++..++. + .+.|.... .......+||+++|+++++++||. .+.|+|
T Consensus 7 ~i~viG~~~iD~~~~~~~-~-----p~~~~~~~--------------~~~~~~~~GG~~~N~A~~la~LG~---~~~~i~ 63 (302)
T 2c4e_A 7 KITCVGHTALDYIFNVEK-F-----PEPNTSIQ--------------IPSARKYYGGAAANTAVGIKKLGV---NSELLS 63 (302)
T ss_dssp EEEEESCCEEEEEEECSS-C-----CCTTCCCC--------------CSCEEEEEECHHHHHHHHHHHTTC---EEEEEC
T ss_pred cEEEECceeEEEEecccc-c-----CCCCceee--------------ecceeecCCCHHHHHHHHHHHCCC---ceEEEE
Confidence 699999999999998853 1 12222111 113467799999999999999998 788888
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.++.-+++.||..+
T Consensus 64 ~vG~D~~g~~i~~~l~~~gv~~~ 86 (302)
T 2c4e_A 64 CVGYDFKNSGYERYLKNLDINIS 86 (302)
T ss_dssp EECTTTTTSHHHHHHHHTTCBCT
T ss_pred EEeCCCchHHHHHHHHHcCCccc
Confidence 7 5678888999999753
No 14
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=98.29 E-value=1.5e-06 Score=66.28 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=57.9
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
.+|+++||+.+|++..+|. + -.+|.....+ .....+||+++|+++++++||. .+.|+
T Consensus 3 ~~i~viG~~~iD~~~~~~~-----~-p~~g~~~~~~--------------~~~~~~GG~~~NvA~~la~lG~---~~~~i 59 (299)
T 3ikh_A 3 LRVYVTGNITVDETWSIPD-----I-PKKGASIHGV--------------KVSQDIGGKGANQAIILSRCGI---ETRLI 59 (299)
T ss_dssp CCEEEECCCEEEEEEECSS-----C-CCTTCEEECE--------------EEEEEEECHHHHHHHHHHHTTC---CEEEE
T ss_pred ceEEEECceEEEEEEecCC-----C-CCCCCeEEee--------------eeeeccCCHHHHHHHHHHHCCC---CeEEE
Confidence 3699999999999999863 1 1233322211 2357799999999999999998 78888
Q ss_pred ee------ccchhhhhhhhccceee
Q psy6978 87 RV------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 87 g~------~~~~~~~~~~~~~~~~~ 105 (112)
|. .+.+++-+++.||..+.
T Consensus 60 ~~vG~D~~g~~i~~~l~~~gv~~~~ 84 (299)
T 3ikh_A 60 AATGNDSNGAWIRQQIKNEPLMLLP 84 (299)
T ss_dssp CCCCSSHHHHHHHHHGGGSSCEEES
T ss_pred EEECCCHHHHHHHHHHHHcCCceee
Confidence 87 56789999999987653
No 15
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Probab=98.27 E-value=1.8e-06 Score=66.42 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=58.6
Q ss_pred CcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCcee
Q psy6978 5 REGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQI 84 (112)
Q Consensus 5 ~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~ 84 (112)
++.+|+++|++++|++..++. +++|....+. .....+||+++|+++++++||. .+.
T Consensus 19 ~~~~v~viG~~~iD~~~~~~~-------~p~g~~~~~~--------------~~~~~~GG~~~NvA~~la~LG~---~~~ 74 (306)
T 3bf5_A 19 GMRFLAYFGHLNIDVLISVDS-------IPREGSVNVK--------------DLRPRFGGTAGNFAIVAQKFRI---PFD 74 (306)
T ss_dssp CCEEEEEECCCEEEEEEECSC-------CCSSEEEECS--------------EEEEEEEHHHHHHHHHHHHTTC---CCE
T ss_pred CCCcEEEECCceEEEEEecCC-------CCCCceEECc--------------ceEecCCChHHHHHHHHHHcCC---CeE
Confidence 345799999999999998863 3455443221 2356799999999999999998 677
Q ss_pred EEee-----ccchhhhhhhhcccee
Q psy6978 85 SLRV-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 85 ~fg~-----~~~~~~~~~~~~~~~~ 104 (112)
|+|. .+.++.-+++.||..+
T Consensus 75 ~i~~vG~D~G~~i~~~L~~~gV~~~ 99 (306)
T 3bf5_A 75 LYSAVGMKTHREYLAMIESMGINTG 99 (306)
T ss_dssp EEEEEETTTCHHHHHHHHHTTCCCT
T ss_pred EEEEEeCChHHHHHHHHHHcCCCch
Confidence 7776 5678888889998754
No 16
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=98.26 E-value=1.4e-06 Score=67.15 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=57.2
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
.+|+++|++++|++..+|. + ..+|.... .......+||+++|+++++++||. .+.|+
T Consensus 20 ~~i~viG~~~iD~~~~v~~-~-----p~~g~~~~--------------~~~~~~~~GG~~~NvA~~la~LG~---~~~~i 76 (310)
T 3go6_A 20 PRVCVVGSVNMDLTFVVDA-L-----PRPGETVL--------------AASLTRTPGGKGANQAVAAARAGA---QVQFS 76 (310)
T ss_dssp CEEEEECCCEEEEEEECSS-C-----CCTTCCCC--------------CSEEEEEEECHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEECCceEEEEEecCC-C-----CCCCCeEE--------------ecceeecCCCHHHHHHHHHHHCCC---CeEEE
Confidence 3699999999999999862 1 12332211 113467899999999999999998 78888
Q ss_pred ee------ccchhhhhhhhcccee
Q psy6978 87 RV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 87 g~------~~~~~~~~~~~~~~~~ 104 (112)
|. .+.++.-+++.||..+
T Consensus 77 ~~vG~D~~g~~i~~~L~~~gV~~~ 100 (310)
T 3go6_A 77 GAFGDDPAAAQLRAHLRANAVGLD 100 (310)
T ss_dssp CEECSSHHHHHHHHHHHHTTCBCT
T ss_pred EEECCCHHHHHHHHHHHHcCCccc
Confidence 87 6778899999999765
No 17
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=98.26 E-value=1.2e-06 Score=68.61 Aligned_cols=76 Identities=16% Similarity=0.055 Sum_probs=56.8
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
+.+|+++|++++|++..++. + ..+|... ........+||+++|+++++++||. .+.|
T Consensus 29 ~~~i~viG~~~iD~~~~~~~-----~-p~~~~~~--------------~~~~~~~~~GG~~~NvA~~la~LG~---~~~~ 85 (343)
T 2rbc_A 29 GKHVLCVGAAVLDTLFRVAD-----M-PKGEGKV--------------LPYEVLQIAEGMASSAAYAVHRMGG---RASL 85 (343)
T ss_dssp CCEEEEESCCEEEEEEECSS-----C-CCSSSCC--------------CCSEEEEEEECHHHHHHHHHHHTTC---EEEE
T ss_pred CCeEEEECcceEEEEeecCC-----C-CCCCCeE--------------eeeeeEEcCCcHHHHHHHHHHHcCC---ceEE
Confidence 45799999999999998853 1 1223211 1113356799999999999999998 7888
Q ss_pred Eee------ccchhhhhhhhcccee
Q psy6978 86 LRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~ 104 (112)
+|. .+.++.-+++.||..+
T Consensus 86 i~~vG~D~~G~~i~~~L~~~GVd~~ 110 (343)
T 2rbc_A 86 WGAVGDDETGTRILRDLSESGIDTS 110 (343)
T ss_dssp ECEEESSHHHHHHHHHHHHTTEECT
T ss_pred EEEeCCCHHHHHHHHHHHHcCCcee
Confidence 887 5678888889998754
No 18
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*
Probab=98.26 E-value=1.9e-06 Score=66.71 Aligned_cols=84 Identities=13% Similarity=-0.001 Sum_probs=57.9
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|||.+|+++.++++|++.+- .+...-..+ ++ ........+||+++|+++++++||. .+.|+|
T Consensus 2 ~i~v~G~~~iD~~~~~~~~~~~~~~--~~~~p~~~~-------~~-~~~~~~~~~GG~~~NvA~~la~LG~---~~~~i~ 68 (326)
T 3b1n_A 2 ATLICGSIAYDNIMTFEGRFREHIL--PDQVHLINL-------SF-LVPTMRREFGGCAGNIAYALNLLGG---DARMMG 68 (326)
T ss_dssp CEEEESCCEEEEEEECSSCGGGGCC--TTSSSSCEE-------EE-ECCSCCCEEECHHHHHHHHHHHTTC---CEEEEE
T ss_pred cEEEECcceEEEEEecchhhhhhcc--ccccCCCCc-------ce-ecccceeccCCHHHHHHHHHHHcCC---CeeEEE
Confidence 5899999999999999888877653 222111111 00 0013355799999999999999998 677776
Q ss_pred ec-c----chhhhhhhhcccee
Q psy6978 88 VQ-E----EVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~~-~----~~~~~~~~~~~~~~ 104 (112)
.. . +++.-+++.||..+
T Consensus 69 ~vG~~D~g~i~~~L~~~gVd~~ 90 (326)
T 3b1n_A 69 TLGAVDAQPYLDRMDALGLSRE 90 (326)
T ss_dssp EEETTTCHHHHHHHHHHTCEEE
T ss_pred EECCcCHHHHHHHHHHcCCccc
Confidence 52 1 26777788888754
No 19
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=98.24 E-value=1.5e-06 Score=67.14 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=56.4
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCC-CCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLK-ANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~-kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
.+|+++|++++|++..++. ++ +|.... .......+||+++|+++++++||. .+.|
T Consensus 25 ~~vlviG~~~iD~~~~~~~-------~p~~g~~~~--------------~~~~~~~~GG~~~NvA~~la~LG~---~~~~ 80 (331)
T 2fv7_A 25 AAVVVVGSCMTDLVSLTSR-------LPKTGETIH--------------GHKFFIGFGGKGANQCVQAARLGA---MTSM 80 (331)
T ss_dssp CSEEEECCCEEEEEEECSS-------CCCTTCCCC--------------CSEEEEEEECHHHHHHHHHHHTTC---CEEE
T ss_pred CCEEEECcccEEEEEecCC-------CCCCCceEe--------------cCceEECcCCHHHHHHHHHHHCCC---CeEE
Confidence 4699999999999999853 22 232111 113466799999999999999998 7888
Q ss_pred Eee------ccchhhhhhhhcccee
Q psy6978 86 LRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~ 104 (112)
+|. .+.++.-+++.||..+
T Consensus 81 i~~vG~D~~G~~l~~~L~~~Gv~~~ 105 (331)
T 2fv7_A 81 VCKVGKDSFGNDYIENLKQNDISTE 105 (331)
T ss_dssp EEEEESSHHHHHHHHHHHTTTEECT
T ss_pred EEEECCChhHHHHHHHHHHcCCcce
Confidence 886 5678888899998754
No 20
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*
Probab=98.23 E-value=1.5e-06 Score=67.61 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=51.9
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
.+|+++|++++|++... .......+||+++|+++++++||. .+.|+
T Consensus 25 ~~ilviG~~~~D~~~~~-------------------------------~~~~~~~~GG~~~NvA~~la~LG~---~~~~i 70 (339)
T 1tyy_A 25 NKVWVIGDASVDLVPEK-------------------------------QNSYLKCPGGASANVGVCVARLGG---ECGFI 70 (339)
T ss_dssp CCEEEESCCEEEEEECS-------------------------------SSEEEEEEECHHHHHHHHHHHTTC---CEEEE
T ss_pred CCEEEECcceeEEeccC-------------------------------CCceEEcCCCHHHHHHHHHHHcCC---CeEEE
Confidence 47999999999999863 112356799999999999999998 78888
Q ss_pred ee------ccchhhhhhhhcccee
Q psy6978 87 RV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 87 g~------~~~~~~~~~~~~~~~~ 104 (112)
|. .+.++.-+++.||..+
T Consensus 71 g~vG~D~~G~~i~~~L~~~gVd~~ 94 (339)
T 1tyy_A 71 GCLGDDDAGRFLRQVFQDNGVDVT 94 (339)
T ss_dssp EEECSSHHHHHHHHHHHTTTEECT
T ss_pred EeeCCCHHHHHHHHHHHHcCCCch
Confidence 87 4668888888998754
No 21
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=98.19 E-value=4e-06 Score=64.92 Aligned_cols=73 Identities=23% Similarity=0.186 Sum_probs=57.8
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
.++.+|||.+|+++.+|. +++|....++ .....+||+++|+++++++||. .+.|+|
T Consensus 22 i~~v~G~~~~D~~~~~~~-------~~~g~~~~~~--------------~~~~~~GG~~~NvA~~la~LG~---~~~~i~ 77 (330)
T 2jg1_A 22 ILTLTLNPSVDISYPLTA-------LKLDDVNRVQ--------------EVSKTAGGKGLNVTRVLAQVGE---PVLASG 77 (330)
T ss_dssp EEEEESSCEEEEEEEESC-------CCTTSEEEES--------------CCEEEEECHHHHHHHHHHHHTC---CEEEEE
T ss_pred EEEEecchhheEEEecCC-------ccCCceEEec--------------eEEEcCCchHHHHHHHHHHhCC---CeEEEE
Confidence 355789999999999974 3667654331 3467799999999999999998 778888
Q ss_pred e-----ccchhhhhhhhcccee
Q psy6978 88 V-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~-----~~~~~~~~~~~~~~~~ 104 (112)
. .+.++.-+++.||..+
T Consensus 78 ~vG~~~G~~l~~~L~~~gV~~~ 99 (330)
T 2jg1_A 78 FIGGELGQFIAKKLDHADIKHA 99 (330)
T ss_dssp EEEHHHHHHHHHHHHHTTCEEC
T ss_pred EecchhHHHHHHHHHHCCCcee
Confidence 6 5678888889998764
No 22
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=98.19 E-value=2.2e-06 Score=65.38 Aligned_cols=75 Identities=15% Similarity=0.057 Sum_probs=55.4
Q ss_pred CCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCc
Q psy6978 3 DVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKS 82 (112)
Q Consensus 3 ~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~ 82 (112)
+|++++|+++|+.++|+....+. .+. + ........+||+++|+++++++||. .
T Consensus 5 ~~~~~~v~~iG~~~~D~~~~~~~-------~p~-------~----------~~~~~~~~~GG~~~NvA~~la~LG~---~ 57 (319)
T 3pl2_A 5 LTSTHEVLAIGRLGVDIYPLQSG-------VGL-------A----------DVQSFGKYLGGSAANVSVAAARHGH---N 57 (319)
T ss_dssp --CCCSEEEESCCEEEECBSSSS-------CCG-------G----------GCCCBCCEEECHHHHHHHHHHHTTC---C
T ss_pred cccCCCEEEEChhheeeecccCC-------CCc-------c----------ccceeeecCCCcHHHHHHHHHHCCC---c
Confidence 45677899999999999865432 000 0 1123456799999999999999998 6
Q ss_pred eeEEee------ccchhhhhhhhcccee
Q psy6978 83 QISLRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 83 ~~~fg~------~~~~~~~~~~~~~~~~ 104 (112)
+.|+|. .+.++.-+++.||..+
T Consensus 58 ~~~i~~vG~D~~g~~i~~~l~~~gv~~~ 85 (319)
T 3pl2_A 58 SALLSRVGNDPFGEYLLAELERLGVDNQ 85 (319)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHTTEECT
T ss_pred eEEEEEeCCCHHHHHHHHHHHHcCCccc
Confidence 777776 5678888999998765
No 23
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=98.18 E-value=2.5e-06 Score=65.75 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=58.8
Q ss_pred CCCCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC
Q psy6978 1 MADVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM 80 (112)
Q Consensus 1 ~~~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~ 80 (112)
|+..++.+|+++|++.+|++..++.. ...|..... .....+||+++|+++++++||.
T Consensus 1 ~~~~~~~~v~viG~~~vD~~~~~~~~------~~~g~~~~~---------------~~~~~~GG~~~NvA~~la~LG~-- 57 (328)
T 3kzh_A 1 MSLRKEPYLLVFGASVVDVFGFSKAS------YRPYNSTPG---------------HVKISFGGVCRNIAENMARVGV-- 57 (328)
T ss_dssp ---CCCCCEEEECCCEEEEEEEESSC------CCTTSEEEE---------------EEEEEEECHHHHHHHHHHHTTC--
T ss_pred CCCCCCCcEEEECcEEeeeeeccCCC------CCCCCCceE---------------EEEEccCcHHHHHHHHHHHcCC--
Confidence 33344567999999999999988641 233433211 2356799999999999999998
Q ss_pred CceeEEee------ccchhhhhhhhcccee
Q psy6978 81 KSQISLRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 81 ~~~~~fg~------~~~~~~~~~~~~~~~~ 104 (112)
.+.|+|. ++.++.-+++.||..+
T Consensus 58 -~v~~i~~vG~D~~g~~i~~~L~~~gv~~~ 86 (328)
T 3kzh_A 58 -NTNFMSILGNDEHGKSIVEHSKKIGYHMD 86 (328)
T ss_dssp -CEEEECEECSSHHHHHHHHHHHHHTEECT
T ss_pred -CcEEEEEecCcHHHHHHHHHHHHcCCCcc
Confidence 7777776 5678899999998754
No 24
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=98.16 E-value=4.8e-06 Score=62.95 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=56.9
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCC-CCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLK-ANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~-kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
+|+++|++.+|+...++. ++ +|... . ........+||+++|+++++++||. .+.|+
T Consensus 4 ~v~viG~~~~D~~~~~~~-------~p~~g~~~-~------------~~~~~~~~~GG~~~NvA~~la~lG~---~~~~~ 60 (304)
T 3ry7_A 4 KVVILGSTNVDQFLTVER-------YAQPGETL-H------------VEEAQKAFGGGKGANQAIATARMQA---DTTFI 60 (304)
T ss_dssp EEEEECCCEEEEEEECSS-------CCCTTCCC-C------------CSSCCEEEEECHHHHHHHHHHHTTC---EEEEE
T ss_pred cEEEEccceeEEEEeccC-------CCCCCCce-e------------cccceeecCCCHHHHHHHHHHHCCC---CeEEE
Confidence 699999999999999863 22 23211 0 1123577899999999999999998 77887
Q ss_pred ee------ccchhhhhhhhcccee
Q psy6978 87 RV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 87 g~------~~~~~~~~~~~~~~~~ 104 (112)
|. ++.+++.+++.||..+
T Consensus 61 ~~vG~D~~g~~i~~~l~~~gv~~~ 84 (304)
T 3ry7_A 61 TKIGTDGVADFILEDFKVAHIDTS 84 (304)
T ss_dssp CEEESSCTTHHHHHHHHHTTCBCT
T ss_pred EEeCCChHHHHHHHHHHHcCCcch
Confidence 76 5778999999999754
No 25
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=98.15 E-value=2.3e-06 Score=66.38 Aligned_cols=75 Identities=7% Similarity=-0.056 Sum_probs=55.1
Q ss_pred CCCCc-ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC
Q psy6978 2 ADVRE-GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM 80 (112)
Q Consensus 2 ~~m~~-~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~ 80 (112)
+.|.+ .+|+++|.+++|+....+ |.. .........+||+++|+++++++||.
T Consensus 21 ~~m~~~~~vlviG~~~iD~~~~~~-----------g~~--------------~~~~~~~~~~GG~~~NvA~~la~LG~-- 73 (336)
T 4du5_A 21 QSMTSALDVITFGEAMMLLVADRP-----------GPL--------------EHAEAFHKRTAGAETNVAIGLARLGL-- 73 (336)
T ss_dssp -----CEEEEEECCCEEEEEESSS-----------SCG--------------GGCCEEEEEEECHHHHHHHHHHHTTC--
T ss_pred eccCCCCCEEEEChhhhhccCCCC-----------Ccc--------------chhhheeecCCCHHHHHHHHHHhCCC--
Confidence 34543 689999999999987542 211 01123467899999999999999998
Q ss_pred CceeEEee------ccchhhhhhhhcccee
Q psy6978 81 KSQISLRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 81 ~~~~~fg~------~~~~~~~~~~~~~~~~ 104 (112)
.+.|+|. .+.++.-+++.||..+
T Consensus 74 -~~~~ig~vG~D~~G~~i~~~L~~~GV~~~ 102 (336)
T 4du5_A 74 -KVGWASRLGTDSMGRYLLAAMAAEGIDCS 102 (336)
T ss_dssp -CEEEEEEECSSHHHHHHHHHHHTTTCEEE
T ss_pred -cEEEEEEeCCCHHHHHHHHHHHHcCCCcc
Confidence 7888876 5678999999999875
No 26
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=98.13 E-value=8.9e-06 Score=61.73 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=56.9
Q ss_pred cEEEec-CceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 8 LLLGLG-NPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 8 ~IvgiG-NpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
+|++++ ||.+|+++.+|. +.+|....+ ......+||++.|+++++++||. .+.|+
T Consensus 3 ~I~~v~g~~~~D~~~~~~~-------~~~g~~~~~--------------~~~~~~~GG~~~NvA~~la~LG~---~~~~i 58 (309)
T 3cqd_A 3 RIYTLTLAPSLDSATITPQ-------IYPEGKLRC--------------TAPVFEPGGGGINVARAIAHLGG---SATAI 58 (309)
T ss_dssp CEEEECSSCEEEEEEEESC-------CCSSSEEEC--------------CCCEEEEESHHHHHHHHHHHTTC---CEEEE
T ss_pred eEEEEeccchheEEEEcCC-------CcCCCeeec--------------cceeecCCchHHHHHHHHHHcCC---CeEEE
Confidence 377665 999999999974 367765433 13467799999999999999998 67777
Q ss_pred ee-----ccchhhhhhhhcccee
Q psy6978 87 RV-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 87 g~-----~~~~~~~~~~~~~~~~ 104 (112)
|. .+.++.-+++.||..+
T Consensus 59 ~~vG~d~g~~i~~~l~~~gv~~~ 81 (309)
T 3cqd_A 59 FPAGGATGEHLVSLLADENVPVA 81 (309)
T ss_dssp EEECHHHHHHHHHHHHHTTCCEE
T ss_pred EEecCchHHHHHHHHHHcCCCce
Confidence 76 5678888888998764
No 27
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1
Probab=98.13 E-value=6.5e-06 Score=63.60 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=60.6
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
+..++++|||.+|+.+.+|. +.+|....+.. .......+||+++|+++++++||. .+.|
T Consensus 12 ~~~~~v~G~~~vD~~~~~~~-------~~~g~~~~~s~-----------~~~~~~~~GG~~~NvA~~la~LG~---~~~~ 70 (331)
T 2ajr_A 12 HMVLTVTLNPALDREIFIED-------FQVNRLYRIND-----------LSKTQMSPGGKGINVSIALSKLGV---PSVA 70 (331)
T ss_dssp CCEEEEESSCEEEEEEECTT-------CCSSCEEECCS-----------GGGEEEEEESHHHHHHHHHHHTTC---CEEE
T ss_pred ceEEEEecchHHeEEEEcCC-------ccCCceEEecc-----------ccceEEecCcHHHHHHHHHHHcCC---CeEE
Confidence 34689999999999999974 46777654420 013366799999999999999998 6788
Q ss_pred Eee-----ccchhhhhhhhc--ccee
Q psy6978 86 LRV-----QEEVKPVQMKSQ--ISLR 104 (112)
Q Consensus 86 fg~-----~~~~~~~~~~~~--~~~~ 104 (112)
+|. .+.+++-+++.| |..+
T Consensus 71 ~~~vG~d~G~~i~~~L~~~g~~V~~~ 96 (331)
T 2ajr_A 71 TGFVGGYMGKILVEELRKISKLITTN 96 (331)
T ss_dssp EEEEEHHHHHHHHHHHHHHCTTEEEE
T ss_pred EEEecCchHHHHHHHHHHcCCccceE
Confidence 876 577888888999 8754
No 28
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=98.12 E-value=5e-06 Score=63.76 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=56.9
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++++|++..++.. +.+|..... .....+||+++|+++++++||. .+.|+|
T Consensus 5 ~i~viG~~~~D~~~~~~~~------~~~~~~~~~---------------~~~~~~GG~~~NvA~~la~LG~---~~~~i~ 60 (317)
T 2nwh_A 5 KILVLGGAHIDRRGMIETE------TAPGASNPG---------------SWMEEAGGGGFNAARNLSRLGF---EVRIIA 60 (317)
T ss_dssp EEEEESCCEEEEEEEESSS------CCTTSCCCE---------------EEEEEEECHHHHHHHHHHHTTC---EEEEEC
T ss_pred eEEEECchheEEeeccCCC------CCCCCCceE---------------eEEEeCCcHHHHHHHHHHhcCC---CcEEEE
Confidence 6999999999999988641 233432110 1356799999999999999998 788888
Q ss_pred e------ccchhhhhhhhccceee
Q psy6978 88 V------QEEVKPVQMKSQISLRV 105 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~~ 105 (112)
. .+.++.-+++.||..+.
T Consensus 61 ~vG~D~~G~~l~~~L~~~gV~~~~ 84 (317)
T 2nwh_A 61 PRGGDVTGEVVAEAARQAGVEDTP 84 (317)
T ss_dssp EEESSHHHHHHHHHHHHTTCEECC
T ss_pred eecCCchHHHHHHHHHHcCCCCCC
Confidence 7 57788889999997654
No 29
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=98.07 E-value=9.2e-06 Score=62.24 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=56.7
Q ss_pred CCCcccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCc
Q psy6978 3 DVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKS 82 (112)
Q Consensus 3 ~m~~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~ 82 (112)
.|++.+|+++|++++|+....+. .+ .. ........+||+++|+++++++||. .
T Consensus 8 ~~~~~~i~viG~~~~D~~~~~~~-------~~-------~~----------~~~~~~~~~GG~~~NvA~~la~LG~---~ 60 (332)
T 2qcv_A 8 TDREFDLIAIGRACIDLNAVEYN-------RP-------ME----------ETMTFSKYVGGSPANIVIGSSKLGL---K 60 (332)
T ss_dssp SCCSEEEEEESCCEEEEEESSCS-------SC-------GG----------GCCCEEEEEESHHHHHHHHHHHTTC---C
T ss_pred cccCCcEEEECcceEEEecCCCC-------CC-------cc----------ccceeEecCCCHHHHHHHHHHHcCC---c
Confidence 34567899999999999986522 00 00 1124467899999999999999998 7
Q ss_pred eeEEee------ccchhhhhhhhcccee
Q psy6978 83 QISLRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 83 ~~~fg~------~~~~~~~~~~~~~~~~ 104 (112)
+.|+|. .+.++.-+++.||..+
T Consensus 61 ~~~i~~vG~D~~G~~l~~~L~~~gV~~~ 88 (332)
T 2qcv_A 61 AGFIGKIADDQHGRFIESYMRGVGVDTS 88 (332)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTTCBCT
T ss_pred eEEEEEeCCCHHHHHHHHHHHHcCCCCc
Confidence 888887 4678888889998754
No 30
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=97.98 E-value=8e-06 Score=62.51 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=52.4
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCC-CceeE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQM-KSQIS 85 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~-~~~~~ 85 (112)
.+|+++|.+++|+.... ......+||+++|+++++++||+.. ..+.|
T Consensus 5 ~~i~viG~~~~D~~~~~--------------------------------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~~ 52 (319)
T 3lhx_A 5 KKIAVIGECMIELSEKG--------------------------------ADVKRGFGGDTLNTSVYIARQVDPAALTVHY 52 (319)
T ss_dssp EEEEEESCCEEEEEC-----------------------------------CCEEEEECHHHHHHHHHHTTSCTTTEEEEE
T ss_pred CceeeechhhhhhccCC--------------------------------CceEEecCChHHHHHHHHHHcCCCCCCcEEE
Confidence 46999999999997532 1346779999999999999999432 47888
Q ss_pred Eee------ccchhhhhhhhcccee
Q psy6978 86 LRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~ 104 (112)
+|. ++.++.-+++.||..+
T Consensus 53 ig~vG~D~~G~~l~~~L~~~GV~~~ 77 (319)
T 3lhx_A 53 VTALGTDSFSQQMLDAWHGENVDTS 77 (319)
T ss_dssp ECEECSSHHHHHHHHHHHTTTEECT
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCcc
Confidence 887 5678999999999865
No 31
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Probab=97.97 E-value=8e-06 Score=62.06 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=53.0
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++++|++...+ |.. .........+||+++|+++++++||. .+.|+|
T Consensus 3 ~v~viG~~~~D~~~~~~-----------~~~--------------~~~~~~~~~~GG~~~NvA~~la~LG~---~~~~~~ 54 (311)
T 2dcn_A 3 KLITLGEILIEFNALSP-----------GPL--------------RHVSYFEKHVAGSEANYCVAFIKQGN---ECGIIA 54 (311)
T ss_dssp EEEEESCCEEEEEESSS-----------SCG--------------GGCCEEEEEEECHHHHHHHHHHHTTC---EEEEEC
T ss_pred CEEEECCceEEEecCCC-----------Ccc--------------cccceeeecCCChHHHHHHHHHHCCC---ceEEEE
Confidence 69999999999987321 110 11223467799999999999999998 788888
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.++.-+++.||..+
T Consensus 55 ~vG~D~~g~~i~~~l~~~gv~~~ 77 (311)
T 2dcn_A 55 KVGDDEFGYNAIEWLRGQGVDVS 77 (311)
T ss_dssp EEESSHHHHHHHHHHHHTTCBCT
T ss_pred EeCCCHHHHHHHHHHHHcCCCcc
Confidence 7 5678888899998754
No 32
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=97.96 E-value=1.1e-05 Score=62.24 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=56.1
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
+.+|+++|.+++|++..++.. ++. .......+||+++|++++++.||. .+.|
T Consensus 4 ~~~v~viG~~~iD~~~~~~~~--------~~~-----------------~~~~~~~~GG~~~NvA~~la~LG~---~~~~ 55 (338)
T 3ljs_A 4 KKTILCFGEALIDMLAQPLVK--------KGM-----------------PRAFLQCAGGAPANVAVAVARLGG---AVQF 55 (338)
T ss_dssp CCEEEEESCCEEEEEECCCSS--------TTS-----------------CCCEEEEEECHHHHHHHHHHHHTC---CEEE
T ss_pred CCCEEEEChhhhheeccCCCC--------ccc-----------------hhceeecCCChHHHHHHHHHhCCC---CEEE
Confidence 347999999999999877531 110 124467899999999999999998 7888
Q ss_pred Eee------ccchhhhhhhhcccee
Q psy6978 86 LRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~ 104 (112)
+|. .+.++.-+++.||..+
T Consensus 56 ig~vG~D~~g~~l~~~l~~~gV~~~ 80 (338)
T 3ljs_A 56 VGMLGSDMFGDFLFDSFAEAGVVTD 80 (338)
T ss_dssp ESEEESSHHHHHHHHHHHHHTCBCT
T ss_pred EeeccCCHHHHHHHHHHHHcCCCce
Confidence 877 6678999999999765
No 33
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=97.95 E-value=2.2e-05 Score=59.55 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=55.8
Q ss_pred EEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee
Q psy6978 9 LLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV 88 (112)
Q Consensus 9 IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~ 88 (112)
+...|||.+|+++.+|. +.+|....++ .....+||+++|+++++++||. .+.|+|.
T Consensus 3 ~tv~~n~~~D~~~~~~~-------~~~g~~~~~~--------------~~~~~~GG~~~N~A~~la~LG~---~~~~~~~ 58 (306)
T 2abq_A 3 YTVTLNPSIDYIVQVEN-------FQQGVVNRSE--------------RDRKQPGGKGINVSRVLKRLGH---ETKALGF 58 (306)
T ss_dssp EEEESSCEEEEEEECTT-------CCSSSEEECS--------------EEEEEEECHHHHHHHHHHHTTC---CCEEEEE
T ss_pred EEEecCchheEEEEcCC-------cccCCeEEec--------------eeEecCCchHHHHHHHHHHcCC---CceEEEE
Confidence 45678999999999974 3677664442 2356799999999999999998 5677776
Q ss_pred -----ccchhhhhhhhcccee
Q psy6978 89 -----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 89 -----~~~~~~~~~~~~~~~~ 104 (112)
.+.+++-+++.||..+
T Consensus 59 vG~~~g~~i~~~L~~~gv~~~ 79 (306)
T 2abq_A 59 LGGFTGAYVRNALEKEEIGLS 79 (306)
T ss_dssp EEHHHHHHHHHHHHHTTCEEC
T ss_pred ecchhHHHHHHHHHHcCCceE
Confidence 5677888888898754
No 34
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}
Probab=97.94 E-value=7.8e-06 Score=62.93 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=55.2
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
..+|+++|++++|++..++.- +.. ........+||+++|++++++.||. .+.|
T Consensus 21 ~~~v~viG~~~~D~~~~~~~~-------p~~-----------------~~~~~~~~~GG~~~NvA~~la~LG~---~~~~ 73 (327)
T 3hj6_A 21 DLDVVSLGEILVDMISTEEVN-------SLS-----------------QSREYTRHFGGSPANIAVNLSRLGK---KVAL 73 (327)
T ss_dssp -CCEEEESCCEEEEECCCCCS-------SGG-----------------GCCEEEEEEECHHHHHHHHHHHTTC---CEEE
T ss_pred CCCEEEEccceEEEeccCCCC-------Ccc-----------------ccceeeeecCcHHHHHHHHHHHcCC---cEEE
Confidence 467999999999999877531 100 1123467899999999999999998 7788
Q ss_pred Eee------ccchhhhhhhhcccee
Q psy6978 86 LRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~ 104 (112)
+|. .+.++.-+++.||..+
T Consensus 74 ig~vG~D~~g~~i~~~l~~~gv~~~ 98 (327)
T 3hj6_A 74 ISRLGADAFGNYLLDVLKGEQIITD 98 (327)
T ss_dssp ECEEESSHHHHHHHHHHHHTTCBCT
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCcc
Confidence 876 5678888999998764
No 35
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=97.93 E-value=1.4e-05 Score=61.37 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=54.8
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCc-eeE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKS-QIS 85 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~-~~~ 85 (112)
.+|+++|++.+|++..+|. + -+.|....+ ......+||+++|+++++++||. . +.|
T Consensus 15 ~~v~vvG~~~iD~~~~~~~-----~-p~~g~~~~~--------------~~~~~~~GG~~~NvA~~la~LG~---~~~~~ 71 (311)
T 1vm7_A 15 LVISVVGSSNIDIVLKVDH-----F-TKPGETQKA--------------IEMNVFPGGKGANQAVTVAKIGE---KGCRF 71 (311)
T ss_dssp CCEEEECCCEEEEEEECSS-----C-CCTTCEEEC--------------SEEEEEEECHHHHHHHHHHHHHS---SCEEE
T ss_pred CCEEEECcceeeEEEeccc-----C-CCCCceEec--------------CeeeecCCCHHHHHHHHHHHcCC---CceEE
Confidence 3699999999999999853 2 123432211 13356799999999999999998 6 778
Q ss_pred Eee------ccchhhhhhhhcc
Q psy6978 86 LRV------QEEVKPVQMKSQI 101 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~ 101 (112)
+|. .+.++.-+++.||
T Consensus 72 i~~vG~D~~G~~l~~~L~~~gV 93 (311)
T 1vm7_A 72 VTCIGNDDYSDLLIENYEKLGI 93 (311)
T ss_dssp EEEECSSHHHHHHHHHHHHTTE
T ss_pred EEEECCChHHHHHHHHHHHCCC
Confidence 776 5678888889998
No 36
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=97.88 E-value=4.7e-05 Score=57.70 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=56.8
Q ss_pred EEEe-cCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 9 LLGL-GNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 9 Ivgi-GNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
|+.+ +||-+|+...+|. + ++|....++ .....+||+++|+++++++||. .+.|+|
T Consensus 4 i~~v~~n~~~D~~~~v~~-----~--~~g~~~~~~--------------~~~~~~GG~~~NvA~~la~LG~---~~~~i~ 59 (309)
T 3umo_A 4 IYTLTLAPSLDSATITPQ-----I--YPEGKLRCT--------------APVFEPGGGGINVARAIAHLGG---SATAIF 59 (309)
T ss_dssp EEEECSSCEEEEEEEESC-----C--CSSSEEECC--------------CCEEEEESHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEEEecchhheEEEEcCc-----c--cCCCeEEec--------------eeeecCCchHHHHHHHHHHcCC---CeEEEE
Confidence 5666 5999999999974 2 566543332 3467899999999999999998 778877
Q ss_pred e-----ccchhhhhhhhcccee
Q psy6978 88 V-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~-----~~~~~~~~~~~~~~~~ 104 (112)
. .+.+++.+++.||..+
T Consensus 60 ~vG~d~g~~i~~~l~~~gv~~~ 81 (309)
T 3umo_A 60 PAGGATGEHLVSLLADENVPVA 81 (309)
T ss_dssp EECHHHHHHHHHHHHHTTCCEE
T ss_pred EecCchHHHHHHHHHHcCCceE
Confidence 7 5778899999999765
No 37
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.84 E-value=3.8e-05 Score=57.72 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=48.5
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++++|++ +. ...+||+++|+++++++||. .+.|+|
T Consensus 5 ~v~viG~~~~D~~-------------p~-----------------------~~~~GG~~~N~A~~la~LG~---~~~~~~ 45 (296)
T 2qhp_A 5 IIVGMGEALWDVL-------------PE-----------------------GKKIGGAPANFAYHVSQFGF---DSRVVS 45 (296)
T ss_dssp EEEEESCCEEEEE-------------TT-----------------------EEEEECHHHHHHHHHHHTTC---EEEEEE
T ss_pred eEEEEchhheEec-------------CC-----------------------CCCCCCHHHHHHHHHHHcCC---CeeEEE
Confidence 6999999999996 00 15699999999999999998 788888
Q ss_pred e------ccchhhhhhhhccceeee
Q psy6978 88 V------QEEVKPVQMKSQISLRVQ 106 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~~~ 106 (112)
. .+.+++-+++.|| ..++
T Consensus 46 ~vG~D~~g~~~~~~l~~~gv-~~v~ 69 (296)
T 2qhp_A 46 AVGNDELGDEIMEVFKEKQL-KNQI 69 (296)
T ss_dssp EEESSHHHHHHHHHHHHTTC-CEEE
T ss_pred EeCCChHHHHHHHHHHHcCC-CEEe
Confidence 7 5678888889999 4443
No 38
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=97.83 E-value=1.8e-05 Score=60.40 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=53.3
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++++|++...+ |.. .........+||+++|++++++.||. .+.|+|
T Consensus 3 ~v~viG~~~iD~~~~~~-----------g~~--------------~~~~~~~~~~GG~~~NvA~~la~LG~---~~~~ig 54 (313)
T 3ewm_A 3 LIASIGELLIDLISVEE-----------GDL--------------KDVRLFEKHPGGAPANVAVGVSRLGV---KSSLIS 54 (313)
T ss_dssp EEEEESCCEEEEEESSS-----------SCT--------------TTCCEEEEEEECHHHHHHHHHHHTTC---EEEEEE
T ss_pred cEEEECceeeeeecCCC-----------CCc--------------ccccceeecCCCHHHHHHHHHHHCCC---CeEEEE
Confidence 58999999999986531 110 01123467799999999999999998 788888
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.+++-+++.||..+
T Consensus 55 ~vG~D~~g~~i~~~l~~~gv~~~ 77 (313)
T 3ewm_A 55 KVGNDPFGEYLIEELSKENVDTR 77 (313)
T ss_dssp EEESSHHHHHHHHHHHHTTCBCT
T ss_pred EeCCCHHHHHHHHHHHHcCCCcc
Confidence 7 5678899999999875
No 39
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=97.81 E-value=4.5e-05 Score=57.58 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=55.6
Q ss_pred EEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEee
Q psy6978 9 LLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRV 88 (112)
Q Consensus 9 IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~ 88 (112)
+..-|||.+|+++.+|. +.+|....+. .....+||+++|+++++++||. .+.|+|.
T Consensus 3 ~tvt~n~~~D~~~~~~~-------~~~g~~~~~~--------------~~~~~~GG~~~N~A~~la~LG~---~~~~~~~ 58 (306)
T 2jg5_A 3 YTVTFNPSIDYVIFTND-------FKIDGLNRAT--------------ATYKFAGGKGINVSRVLKTLDV---ESTALGF 58 (306)
T ss_dssp EEEESSCEEEEEEECSS-------CCTTSEEECS--------------EEEEEEESHHHHHHHHHHHTTC---CCEEEEE
T ss_pred EEEecCceEEEEEEcCC-------cccCceEEec--------------eeEecCCchHHHHHHHHHHcCC---CeeEEEE
Confidence 45678999999999974 2667654432 3356799999999999999998 6667765
Q ss_pred -----ccchhhhhhhhcccee
Q psy6978 89 -----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 89 -----~~~~~~~~~~~~~~~~ 104 (112)
.+.+++-+++.||..+
T Consensus 59 vG~~~g~~i~~~l~~~gv~~~ 79 (306)
T 2jg5_A 59 AGGFPGKFIIDTLNNSAIQSN 79 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCEEC
T ss_pred ecCcchHHHHHHHHHCCCcee
Confidence 5677888888888754
No 40
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A
Probab=97.81 E-value=2e-05 Score=60.71 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=52.7
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
.+|+++|.+++|+....+ |.... .........+||+++|++++++.||. .+.|+
T Consensus 4 ~~i~viG~~~~D~~~~~~-----------~~~~~------------~~~~~~~~~~GG~~~NvA~~la~LG~---~~~~i 57 (330)
T 3iq0_A 4 SKVFTIGEILVEIMASKI-----------GQPFD------------QPGIWNGPYPSGAPAIFIDQVTRLGV---PCGII 57 (330)
T ss_dssp CEEEEESCCEEEEEEEEE-----------TCCSS------------SCEEEEEEEEECHHHHHHHHHHHTTC---CEEEE
T ss_pred CCEEEEcceeEEEeccCC-----------CCCcc------------ccccccCcCCCCHHHHHHHHHHHCCC---cEEEE
Confidence 369999999999998521 11000 00011245799999999999999998 67777
Q ss_pred ee------ccchhhhhhhhcccee
Q psy6978 87 RV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 87 g~------~~~~~~~~~~~~~~~~ 104 (112)
|. ++.++.-+++.||..+
T Consensus 58 ~~vG~D~~g~~i~~~l~~~gv~~~ 81 (330)
T 3iq0_A 58 SCVGNDGFGDINIHRLAADGVDIR 81 (330)
T ss_dssp EEEESSHHHHHHHHHHHHTTCBCT
T ss_pred EEeCCChHHHHHHHHHHHcCCCee
Confidence 76 5778999999999754
No 41
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=97.79 E-value=2.7e-05 Score=60.05 Aligned_cols=69 Identities=16% Similarity=0.057 Sum_probs=53.0
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|..++|+...- .|. +.........+||+++|+++++++||. .+.|+|
T Consensus 4 ~v~viG~~~~D~~~~~-----------~~~--------------~~~~~~~~~~~GG~~~NvA~~la~LG~---~~~~i~ 55 (346)
T 3ktn_A 4 KIAAFGEVMLRFTPPE-----------YLM--------------LEQTEQLRMNFVGTGVNLLANLAHFQL---ETALIT 55 (346)
T ss_dssp EEEEECCCEEEEECST-----------TCC--------------TTTCSCCEEEEECHHHHHHHHHHHTTC---EEEEEE
T ss_pred cEEEeChhhhhhcCCC-----------CCc--------------ccccceeEEeccCHHHHHHHHHHHcCC---CeEEEE
Confidence 6999999999987411 111 011224577899999999999999998 788887
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.++..+++.||..+
T Consensus 56 ~vG~D~~g~~i~~~l~~~gv~~~ 78 (346)
T 3ktn_A 56 KLPANRLGEAGKAALRKLGISDQ 78 (346)
T ss_dssp EECSSHHHHHHHHHHHHTTCBCT
T ss_pred ecCCCHHHHHHHHHHHHcCCcce
Confidence 7 6778899999999764
No 42
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=97.79 E-value=3.1e-05 Score=58.98 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=52.3
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++++|++...+ |.. .........+||+++|+++++++||. .+.|+|
T Consensus 3 ~v~viG~~~~D~~~~~~-----------~~~--------------~~~~~~~~~~GG~~~N~A~~la~LG~---~~~~i~ 54 (313)
T 2v78_A 3 DVIALGEPLIQFNSFNP-----------GPL--------------RFVNYFEKHVAGSELNFCIAVVRNHL---SCSLIA 54 (313)
T ss_dssp CEEEECCCEEEEEESSS-----------SCG--------------GGCCEEEEEEECHHHHHHHHHHHTTC---CEEEEE
T ss_pred eEEEECcceEEEecCCC-----------Ccc--------------cccceeEecCCChHHHHHHHHHHCCC---cEEEEE
Confidence 59999999999986221 110 01123467799999999999999998 788888
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.++.-+++.||..+
T Consensus 55 ~vG~D~~g~~~~~~l~~~gv~~~ 77 (313)
T 2v78_A 55 RVGNDEFGKNIIEYSRAQGIDTS 77 (313)
T ss_dssp EEESSHHHHHHHHHHHHTTCBCT
T ss_pred EeCCCHHHHHHHHHHHHcCCcCc
Confidence 6 5678888899998754
No 43
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=97.73 E-value=5.2e-05 Score=57.86 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=55.4
Q ss_pred EEEecCceeee-EeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 9 LLGLGNPLLDI-SATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 9 IvgiGNpLvDi-~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+..-+||-+|+ .+.+|. + ++|....+. .....+||+++|+++++++||. .+.|+|
T Consensus 5 ~tvt~np~iD~~~~~v~~-----~--~~g~~~~~~--------------~~~~~~GG~~~NvA~~la~LG~---~~~~i~ 60 (320)
T 3ie7_A 5 YTITLNPAIDRLLFIRGE-----L--EKRKTNRVI--------------KTEFDCGGKGLHVSGVLSKFGI---KNEALG 60 (320)
T ss_dssp EEEESSCEEEEEEEESSS-----C--CTTSCCCCS--------------EEEEEEESHHHHHHHHHHHHTC---CEEEEE
T ss_pred EEEecchHHeeeEEEcCC-----c--cCCCeeEec--------------eeeecCCchHHHHHHHHHHcCC---CeEEEE
Confidence 45567999999 999963 3 566543222 2467899999999999999998 677777
Q ss_pred e-----ccchhhhhhhhcccee
Q psy6978 88 V-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~-----~~~~~~~~~~~~~~~~ 104 (112)
. ++.+++-+++.||..+
T Consensus 61 ~vG~d~g~~i~~~l~~~gv~~~ 82 (320)
T 3ie7_A 61 IAGSDNLDKLYAILKEKHINHD 82 (320)
T ss_dssp EEESTTHHHHHHHHHHTTCCBC
T ss_pred EecCchHHHHHHHHHHcCCceE
Confidence 6 5678888999998765
No 44
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=97.72 E-value=3.9e-05 Score=59.39 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=51.9
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhC--CCCCCceeE
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVK--PVQMKSQIS 85 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~L--g~~~~~~~~ 85 (112)
+|+++|.+++|+... +|. ......+||+++|+++++++| |. .+.|
T Consensus 25 ~i~viG~~~iD~~~~------------~~~------------------~~~~~~~GG~~~NvA~~la~Lg~G~---~~~~ 71 (328)
T 4e69_A 25 HILSIGECMAELAPA------------DLP------------------GTYRLGFAGDTFNTAWYLARLRPES---RISY 71 (328)
T ss_dssp EEEEESCCEEEEEEC------------SST------------------TEEEEEEECHHHHHHHHHHHHCTTS---EEEE
T ss_pred cEEEecCcEEEEecC------------CCC------------------CceEEecCCHHHHHHHHHHhcCCCC---cEEE
Confidence 699999999999984 111 134677999999999999999 55 7888
Q ss_pred Eee------ccchhhhhhhhcccee
Q psy6978 86 LRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~ 104 (112)
+|. .+.++.-+++.||..+
T Consensus 72 ig~vG~D~~G~~l~~~L~~~GV~~~ 96 (328)
T 4e69_A 72 FSAIGDDALSQQMRAAMSAAGIDGG 96 (328)
T ss_dssp ECEECSSHHHHHHHHHHHHTTEECT
T ss_pred EEeeCCCHHHHHHHHHHHHcCCccc
Confidence 887 5678899999999765
No 45
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=97.69 E-value=3.8e-05 Score=58.33 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=51.8
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|++++|++... .|.. .........+||+++|+++++++||. .+.|+|
T Consensus 3 ~i~viG~~~~D~~~~~-----------~~~~--------------~~~~~~~~~~GG~~~NvA~~la~LG~---~~~~~~ 54 (309)
T 1v1a_A 3 EVVTAGEPLVALVPQE-----------PGHL--------------RGKRLLEVYVGGAEVNVAVALARLGV---KVGFVG 54 (309)
T ss_dssp SEEEESCCEEEEECSS-----------SSCG--------------GGCCEEEEEEECHHHHHHHHHHHHTC---CEEEEE
T ss_pred cEEEEccceEEEecCC-----------CCcc--------------cchheeeeecCcHHHHHHHHHHHcCC---CeEEEE
Confidence 5999999999998421 1110 01123466799999999999999998 788888
Q ss_pred e------ccchhhhhhhhcccee
Q psy6978 88 V------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~~ 104 (112)
. .+.+++-+++.||..+
T Consensus 55 ~vG~D~~g~~i~~~L~~~gv~~~ 77 (309)
T 1v1a_A 55 RVGEDELGAMVEERLRAEGVDLT 77 (309)
T ss_dssp EECSSHHHHHHHHHHHHHTCBCT
T ss_pred EeCCCHHHHHHHHHHHHcCCCCc
Confidence 6 5678888889998754
No 46
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}
Probab=97.52 E-value=9.4e-05 Score=57.12 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=51.3
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|++||-.++|+.-.-. ..+. ....-...+||+++|++++++.||. .+.|+|
T Consensus 26 kv~~~GE~m~~l~p~~~-------------~~~~------------~~~~~~~~~GG~~aNvA~~larLG~---~~~~ig 77 (351)
T 4gm6_A 26 QVVTIGELLMRLSTQQG-------------IPFS------------QTTALDIHIGGAEANVAVNLSKLGH---PTRIAT 77 (351)
T ss_dssp EEEEECCCEEEEECCTT-------------CCGG------------GCSEEEEEEECHHHHHHHHHHHTTC---CEEEEE
T ss_pred CEEEEcceeEEecCCCC-------------CCcc------------ccCeEEEecCChHHHHHHHHHHcCC---CeEEEE
Confidence 69999999999763211 0111 1112356789999999999999999 788888
Q ss_pred e------ccchhhhhhhhccce
Q psy6978 88 V------QEEVKPVQMKSQISL 103 (112)
Q Consensus 88 ~------~~~~~~~~~~~~~~~ 103 (112)
. ++.++.-+++.||..
T Consensus 78 ~vG~D~~G~~l~~~L~~~GVdt 99 (351)
T 4gm6_A 78 VVPANPIGKMAVEHLWRHQVDT 99 (351)
T ss_dssp EECSSHHHHHHHHHHHHTTEEC
T ss_pred EeCCCHHHHHHHHHHHHcCCCc
Confidence 8 678899999999864
No 47
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=97.40 E-value=0.00022 Score=56.03 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=56.5
Q ss_pred CCcccEEEecCceeeeEee--cCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCC
Q psy6978 4 VREGLLLGLGNPLLDISAT--VDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMK 81 (112)
Q Consensus 4 m~~~~IvgiGNpLvDi~a~--Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~ 81 (112)
|+..+|+++|...+|++.. ++ ++.-+.....+ ........+||+ +|++++++.||.
T Consensus 51 ~~~~~ilvvG~~~~D~~~~g~v~-----r~~p~~p~~~~-------------~~~~~~~~~GG~-~NvA~~la~LG~--- 108 (352)
T 4e84_A 51 LARSRVLVVGDVMLDRYWFGNVD-----RISPEAPVPVV-------------HVQRQEERLGGA-ANVARNAVTLGG--- 108 (352)
T ss_dssp HTTCEEEEEECEEEEEEEEEEEE-----EECSSSSSEEE-------------EEEEEEEEEEEH-HHHHHHHHHTTC---
T ss_pred cCCCcEEEECccceEEEEeeccc-----ccCCCCCcceE-------------EeeEEEEecChH-HHHHHHHHHcCC---
Confidence 3456799999999999876 32 11101011110 011235679998 899999999998
Q ss_pred ceeEEee------ccchhhhhhhhccceeee
Q psy6978 82 SQISLRV------QEEVKPVQMKSQISLRVQ 106 (112)
Q Consensus 82 ~~~~fg~------~~~~~~~~~~~~~~~~~~ 106 (112)
.+.|+|. ++.++.-+++.||...++
T Consensus 109 ~v~~ig~vG~D~~G~~i~~~L~~~GV~~~~~ 139 (352)
T 4e84_A 109 QAGLLCVVGCDEPGERIVELLGSSGVTPHLE 139 (352)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEEEeCCChhHHHHHHHHHHcCCceeeE
Confidence 7888887 677899999999987554
No 48
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}
Probab=97.15 E-value=0.00042 Score=52.96 Aligned_cols=64 Identities=22% Similarity=0.115 Sum_probs=48.8
Q ss_pred cEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEe
Q psy6978 8 LLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLR 87 (112)
Q Consensus 8 ~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg 87 (112)
+|+++|+.++|++... .| .....+||+++|++++++.||.. .+.|+|
T Consensus 4 ~ilviG~~~iD~~~~~-----------~~--------------------~~~~~~GG~~~NvA~~la~LG~~--~~~~ig 50 (313)
T 3kd6_A 4 SLLVIGSLAFDDIETP-----------FG--------------------RSDNTLGGSSTYIALSASYFTDE--PIRMVG 50 (313)
T ss_dssp CEEEESCCEEEEEECS-----------SC--------------------EEEEEEECHHHHHHHHHTTTCSS--CEEEEE
T ss_pred cEEEEeEEEEeeecCC-----------CC--------------------cccccCCCHHHHHHHHHHHhCCC--ceEEEE
Confidence 5999999999999521 01 12567999999999999999861 355555
Q ss_pred e-----ccchhhhhhhhcccee
Q psy6978 88 V-----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 88 ~-----~~~~~~~~~~~~~~~~ 104 (112)
. .+.++.-+++.||..+
T Consensus 51 ~vG~D~g~~~~~~L~~~gVd~~ 72 (313)
T 3kd6_A 51 VVGSDFGKEHFDLLHAKNIDTR 72 (313)
T ss_dssp EEETTSCHHHHHHHHHTTEEEE
T ss_pred ecCCCcHHHHHHHHHHcCCCcc
Confidence 5 5678888899998764
No 49
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=96.18 E-value=0.0037 Score=48.16 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=51.3
Q ss_pred cccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeE
Q psy6978 6 EGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS 85 (112)
Q Consensus 6 ~~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~ 85 (112)
+.+|+.||-++.++...-.+ .+. ........+||+++|+++++++||. .+.|
T Consensus 12 ~~~~~~~ge~l~~~~~~~~~-------------~~~------------~~~~~~~~~GG~~~NvA~~la~LG~---~~~~ 63 (351)
T 2afb_A 12 HMKVVTFGEIMLRLSPPDHK-------------RIF------------QTDSFDVTYGGAEANVAAFLAQMGL---DAYF 63 (351)
T ss_dssp CCEEEEESCCEEEEECSTTC-------------CGG------------GCSEEEEEEECHHHHHHHHHHHTTS---EEEE
T ss_pred cceEEEechhhheecCCCCc-------------ccc------------ccceeeEecCChHHHHHHHHHHcCC---CeEE
Confidence 45799999999886542110 000 1113466799999999999999998 7778
Q ss_pred Eee------ccchhhhhhhhcccee
Q psy6978 86 LRV------QEEVKPVQMKSQISLR 104 (112)
Q Consensus 86 fg~------~~~~~~~~~~~~~~~~ 104 (112)
+|. .+.++.-+++.||..+
T Consensus 64 i~~vG~D~~G~~i~~~L~~~gv~~~ 88 (351)
T 2afb_A 64 VTKLPNNPLGDAAAGHLRKFGVKTD 88 (351)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCBCT
T ss_pred EEEeCCCHHHHHHHHHHHHcCCcce
Confidence 876 5678888888888754
No 50
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=96.04 E-value=0.0081 Score=45.42 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=47.5
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEE
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f 86 (112)
..|+..|.|..|-..+.+ .....+||+++|+++++++||. .+.|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~GG~~~NvA~~la~LG~---~~~~i 56 (298)
T 1vk4_A 12 HMITFIGHVSKDVNVVDG--------------------------------KREIAYGGGVVMGAITSSLLGV---KTKVI 56 (298)
T ss_dssp SEEEEECCCEEEEEEETT--------------------------------EEEEEEECHHHHHHHHHHHTTC---EEEEE
T ss_pred eeEEEeccccCceEeecC--------------------------------eEEEecCCHHHHHHHHHHHcCC---ceEEE
Confidence 347777888777776552 2356799999999999999998 78888
Q ss_pred ee----ccchhhhhhhhcccee
Q psy6978 87 RV----QEEVKPVQMKSQISLR 104 (112)
Q Consensus 87 g~----~~~~~~~~~~~~~~~~ 104 (112)
|. .+.++.-+++.||..+
T Consensus 57 ~~vG~D~~~~~~~L~~~gVd~~ 78 (298)
T 1vk4_A 57 TKCTREDVSKFSFLRDNGVEVV 78 (298)
T ss_dssp EEECTTTGGGGTTTGGGTCEEE
T ss_pred EEEcCCHHHHHHHHHHcCCceE
Confidence 87 2456666778888655
No 51
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=41.10 E-value=22 Score=23.50 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=33.8
Q ss_pred cChHHHHHHHHHHhCCCCCCceeEEeeccchhhhhhhhccceee
Q psy6978 62 AGGSTQNTLRVAQVKPVQMKSQISLRVQEEVKPVQMKSQISLRV 105 (112)
Q Consensus 62 ~GGSA~NTir~~a~Lg~~~~~~~~fg~~~~~~~~~~~~~~~~~~ 105 (112)
..+.-.+..+.++.+|+ .+.+-|+..+|++++...|+..+.
T Consensus 60 g~~~L~~~~~~~~l~G~---~~~l~Gi~p~va~~l~~~G~~l~~ 100 (123)
T 3zxn_A 60 VTRVLIEISRLAELLGL---PFVLTGIKPAVAITLTEMGLDLRG 100 (123)
T ss_dssp HHHHHHHHHHHHHHHTC---CEEEECCCHHHHHHHHHTTCCSTT
T ss_pred HHHHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhCCCccc
Confidence 34566677778888888 899999999999999999998543
No 52
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=40.30 E-value=34 Score=21.11 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=24.7
Q ss_pred ccEEEecCceeeeEeecCHHHHHHcCCCCCce
Q psy6978 7 GLLLGLGNPLLDISATVDASFLEKYNLKANNA 38 (112)
Q Consensus 7 ~~IvgiGNpLvDi~a~Vdd~fL~~~gL~kG~m 38 (112)
.+|.=.||. ..+.++.++++++|+..|+.
T Consensus 4 ~~v~k~Gns---~~v~iPk~~~~~lgl~~gd~ 32 (82)
T 1mvf_D 4 SSVKRWGNS---PAVRIPATLMQALNLNIDDE 32 (82)
T ss_dssp CBCEEETTE---EEEECCHHHHHHTTCCTTCB
T ss_pred EEEEEECCc---cEEEECHHHHHHcCCCCCCE
Confidence 457888998 57888999999999999876
No 53
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=32.99 E-value=17 Score=29.82 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=45.8
Q ss_pred ecCHHHHHHcCCCCCceeeehH--HHHHHHHHHhhCCCCeeec-ChHHHHHHHHHHhCCCCCCceeEEeecc
Q psy6978 22 TVDASFLEKYNLKANNAILADE--KHKDLYEDLIKNNNVDYIA-GGSTQNTLRVAQVKPVQMKSQISLRVQE 90 (112)
Q Consensus 22 ~Vdd~fL~~~gL~kG~m~L~de--~~~~L~~eL~~~~~~~~~~-GGSA~NTir~~a~Lg~~~~~~~~fg~~~ 90 (112)
+.+++++++|+-+.-.. +++. ++.++++++. -.+...+. ..+...|+.++..|..+.+.-.+||+.|
T Consensus 144 SL~~~ll~~yg~~~~ea-mVeSAl~~~~~~e~~g-f~~iviS~K~S~v~~~i~ayr~la~~~dyPLHlGvTE 213 (366)
T 3noy_A 144 SLEKDLLEKYGYPSAEA-LAESALRWSEKFEKWG-FTNYKVSIKGSDVLQNVRANLIFAERTDVPLHIGITE 213 (366)
T ss_dssp GCCHHHHHHHSSCCHHH-HHHHHHHHHHHHHHTT-CCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEECCSS
T ss_pred CCCHHHHHhcCCCCHHH-HHHHHHHHHHHHHhCC-CCeEEEeeecCChHHHHHHHHHHHhccCCCEEEccCC
Confidence 46899999998543222 3332 6778888873 33443333 3446678888888887788999999965
No 54
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Probab=30.47 E-value=87 Score=25.85 Aligned_cols=83 Identities=11% Similarity=0.007 Sum_probs=50.4
Q ss_pred EEec-CceeeeEeecCHH----HHHHcCCCC----------------------------Cc-e--eeehHHHHHHHHHHh
Q psy6978 10 LGLG-NPLLDISATVDAS----FLEKYNLKA----------------------------NN-A--ILADEKHKDLYEDLI 53 (112)
Q Consensus 10 vgiG-NpLvDi~a~Vdd~----fL~~~gL~k----------------------------G~-m--~L~de~~~~L~~eL~ 53 (112)
+.+| |+-||.+.+.+++ +|++++..+ |. + -+.++ ++++.+.
T Consensus 25 v~~Gyn~nVD~iv~~~~~~i~~ll~~~~~~~~~~~~~~~~~~I~s~~dl~~~~~~~~~~G~aaE~~v~~~---~lf~~l~ 101 (455)
T 1ua4_A 25 VLLGYNTNIDAIKYLDSKDLEERIIKAGKEEVIKYSEELPDKINTVSQLLGSILWSIRRGKAAELFVESC---PVRFYMK 101 (455)
T ss_dssp EEEESCCEEEEEEECCHHHHHHHHHHHCHHHHHHHHHSCCSSBCSHHHHHHHHHHHHHHTCCEEEEBCCH---HHHHHHH
T ss_pred EEEEccCcEEEEEecchHHHHHHHHHcCCcccccccccCCccCCCHHHHHHHHHHHHhCCcceeeeccCH---HHHHHHH
Confidence 4666 9999999999774 778777543 32 1 22233 3333333
Q ss_pred hCCCCeeecChHHHHHHHHHHhCCCCCCceeE--Eee-ccchhhhhhh
Q psy6978 54 KNNNVDYIAGGSTQNTLRVAQVKPVQMKSQIS--LRV-QEEVKPVQMK 98 (112)
Q Consensus 54 ~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~--fg~-~~~~~~~~~~ 98 (112)
+..-....-||-|+--+..++.+|. ..+. -|. ..++++.+.+
T Consensus 102 ~~~~~~~~~GGnA~imAn~la~lg~---~~vl~~~~~l~~~~~~lf~~ 146 (455)
T 1ua4_A 102 RWGWNELRMGGQAGIMANLLGGVYG---VPVIVHVPQLSRLQANLFLD 146 (455)
T ss_dssp HHCCSEEEEESHHHHHHHHHTTTTC---CCEEECCSCCCHHHHTTSCS
T ss_pred HhcCCccccCCcHHHHHHHHHHcCC---CEEEEeCCCCCHHHHHhcCC
Confidence 2111233679999999888888877 4444 222 5556666654
No 55
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=29.06 E-value=17 Score=27.67 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhCC-CCeeecChHHHHHHHHHHhCCCCCC
Q psy6978 44 KHKDLYEDLIKNN-NVDYIAGGSTQNTLRVAQVKPVQMK 81 (112)
Q Consensus 44 ~~~~L~~eL~~~~-~~~~~~GGSA~NTir~~a~Lg~~~~ 81 (112)
....++.+..+.. .....+|||+.|+.+++++.+..-+
T Consensus 57 ~~~~~i~~a~~~G~~~vv~~G~ssGN~g~alA~~a~~~G 95 (325)
T 1j0a_A 57 KLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLG 95 (325)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhC
Confidence 3444455543333 3355678999999999999876544
No 56
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=27.50 E-value=71 Score=23.33 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=42.4
Q ss_pred eeEeecCHHHHHHcCCCCCceeeehHHHHHHHHHHhhCCCCeeecChHHHHHHHHHHhCCCCCCceeEEeeccchhhhhh
Q psy6978 18 DISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISLRVQEEVKPVQM 97 (112)
Q Consensus 18 Di~a~Vdd~fL~~~gL~kG~m~L~de~~~~L~~eL~~~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~fg~~~~~~~~~~ 97 (112)
...+.|+.+.+.+|+|.||. .|.+++..+|...-. --.|-| +++.+|..++.+ .-||+.-+.
T Consensus 25 ~~~f~v~~~~l~~~~L~kg~-el~~e~~~~i~~~~~---------~~~a~~--~Al~~Ls~r~~S------~~EL~~KL~ 86 (221)
T 3d5l_A 25 KYAFPVAESVLIQFRLMKGT-ELDEKQIAAIATADQ---------QAKAYS--RMLDYLSYQMRT------ESDIVKKLK 86 (221)
T ss_dssp EEEEEEEHHHHHHTTCCTTC-EECHHHHHHHHHHHH---------HHHHHH--HHHHHHTTSCCC------HHHHHHHHH
T ss_pred CeeEEeeHHHHHHcCCcCCC-CCCHHHHHHHHHhHH---------HHHHHH--HHHHHhcccccc------HHHHHHHHH
Confidence 45678999999999999994 577776666665432 012222 245555543332 246777777
Q ss_pred hhccce
Q psy6978 98 KSQISL 103 (112)
Q Consensus 98 ~~~~~~ 103 (112)
+.|++.
T Consensus 87 ~kg~~~ 92 (221)
T 3d5l_A 87 EIDTPE 92 (221)
T ss_dssp HTTCCH
T ss_pred hcCCCH
Confidence 666654
No 57
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=24.70 E-value=29 Score=24.27 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=9.7
Q ss_pred CCCcccEEEecCcee
Q psy6978 3 DVREGLLLGLGNPLL 17 (112)
Q Consensus 3 ~m~~~~IvgiGNpLv 17 (112)
+| +.-|+|+||+|.
T Consensus 3 ~M-~~lVlGiGN~l~ 16 (159)
T 2e85_A 3 AV-TDVLLCVGNSMM 16 (159)
T ss_dssp CC-CEEEEEECCGGG
T ss_pred CC-CEEEEEECCccc
Confidence 35 346889999864
No 58
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=23.15 E-value=1.7e+02 Score=24.33 Aligned_cols=81 Identities=12% Similarity=0.015 Sum_probs=49.6
Q ss_pred EEec-CceeeeEeecCH----HHHHHcCCCC----------------------------Cce---eeehHHHHHHHHHHh
Q psy6978 10 LGLG-NPLLDISATVDA----SFLEKYNLKA----------------------------NNA---ILADEKHKDLYEDLI 53 (112)
Q Consensus 10 vgiG-NpLvDi~a~Vdd----~fL~~~gL~k----------------------------G~m---~L~de~~~~L~~eL~ 53 (112)
+.+| |+=+|.++..++ .+|++++.++ |.. -+.++ +++..+.
T Consensus 33 i~~Gyn~nvD~iv~~~~~~i~~Ll~~~~~~~~~~~~~~~~~~I~s~~dl~~~~~~~~~~G~aaE~~v~~~---~~f~~l~ 109 (467)
T 1gc5_A 33 VLLAYNTNIDAIKYLDADDLEKRVTEKGKEKVFEIIENPPEKISSIEELLGGILRSIKLGKAMEWFVESE---EVRRYLR 109 (467)
T ss_dssp EEEESCCEEEEEEECCHHHHHHHHHHHCHHHHHHHHHSCCSSBCSHHHHHHHHHHHHHSCCCEEEEBCCH---HHHHHHH
T ss_pred EEEEecccEEEEEeCchHHHHHHHHHcCCcccccccccCccccCCHHHHHHHHHHHHhCCCceEEeccCH---HHHHHHH
Confidence 4556 999999999977 4788887753 321 23333 3444443
Q ss_pred h-CCCCeeecChHHHHHHHHHHhCCCCCCceeEE-ee--ccchhhhhh
Q psy6978 54 K-NNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL-RV--QEEVKPVQM 97 (112)
Q Consensus 54 ~-~~~~~~~~GGSA~NTir~~a~Lg~~~~~~~~f-g~--~~~~~~~~~ 97 (112)
+ ..+.. .-||-|+--+-.++.+|. .++.+ +. ..++++.+.
T Consensus 110 ~~~~~~~-~mGGnAgimAn~la~lg~---~~vl~~~~~~s~~~~~l~~ 153 (467)
T 1gc5_A 110 EWGWDEL-RIGGQAGIMANLLGGVYR---IPTIVHVPQNPKLQAELFV 153 (467)
T ss_dssp HHCCSEE-EEESHHHHHHHHHHHTSC---CCEEECCSCCCHHHHTTSC
T ss_pred HhcCccc-ccCccHHHHHHHHHhcCC---CEEEEcCCCCCHHHHHhcC
Confidence 3 12222 679999988888888877 34332 32 455555554
No 59
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=22.82 E-value=31 Score=22.85 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=11.5
Q ss_pred CCCcccEEEecCcee
Q psy6978 3 DVREGLLLGLGNPLL 17 (112)
Q Consensus 3 ~m~~~~IvgiGNpLv 17 (112)
+++.+.|+++|||-+
T Consensus 47 ~~~~~~il~~cnP~~ 61 (129)
T 1j3m_A 47 EKPPYLILGACNPNL 61 (129)
T ss_dssp CCCCEEEEEEECHHH
T ss_pred CCCCeEEEEECCHHH
Confidence 456778999999864
No 60
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=22.78 E-value=31 Score=24.15 Aligned_cols=12 Identities=42% Similarity=0.595 Sum_probs=8.8
Q ss_pred cccEEEecCcee
Q psy6978 6 EGLLLGLGNPLL 17 (112)
Q Consensus 6 ~~~IvgiGNpLv 17 (112)
+.-|+|+||+|.
T Consensus 4 ~ilVlGiGN~L~ 15 (157)
T 3pu6_A 4 KKVLLCVGNELR 15 (157)
T ss_dssp CEEEEEECCTTB
T ss_pred CEEEEEECCccc
Confidence 455889999863
No 61
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=22.49 E-value=31 Score=25.42 Aligned_cols=7 Identities=71% Similarity=1.578 Sum_probs=6.0
Q ss_pred EEEecCc
Q psy6978 9 LLGLGNP 15 (112)
Q Consensus 9 IvgiGNp 15 (112)
|+|+|||
T Consensus 7 IVGLGNP 13 (193)
T 4hoy_A 7 IVGLGNP 13 (193)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 7888888
Done!