RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6978
(112 letters)
>gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase.
Length = 332
Score = 112 bits (282), Expect = 2e-31
Identities = 41/63 (65%), Positives = 53/63 (84%)
Query: 12 LGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLR 71
+GNPLLDISA VD FL+KY++K NNAILA+EKH +Y++L NV+YIAGG+TQN++R
Sbjct: 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIR 60
Query: 72 VAQ 74
VAQ
Sbjct: 61 VAQ 63
>gnl|CDD|240328 PTZ00247, PTZ00247, adenosine kinase; Provisional.
Length = 345
Score = 110 bits (277), Expect = 1e-30
Identities = 39/66 (59%), Positives = 46/66 (69%)
Query: 9 LLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQN 68
LLG GNPLLDISA V FLEKY L+ +AILA+EK ++E+L NV Y+ GGS N
Sbjct: 8 LLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALN 67
Query: 69 TLRVAQ 74
T RVAQ
Sbjct: 68 TARVAQ 73
>gnl|CDD|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the
phosphorylation of ribofuranosyl-containing nucleoside
analogues at the 5'-hydroxyl using ATP or GTP as the
phosphate donor.The physiological function of AK is
associated with the regulation of extracellular
adenosine levels and the preservation of intracellular
adenylate pools. Adenosine kinase is involved in the
purine salvage pathway. .
Length = 312
Score = 88.1 bits (219), Expect = 3e-22
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 9 LLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQN 68
+LGLGN L+DI A VD +FLEK LK + ILA + E+L+ V YIAGGS N
Sbjct: 4 VLGLGNALVDILAQVDDAFLEKLGLKKGDMILA---DMEEQEELLAKLPVKYIAGGSAAN 60
Query: 69 TLRVAQ 74
T+R A
Sbjct: 61 TIRGAA 66
>gnl|CDD|185033 PRK15074, PRK15074, inosine/guanosine kinase; Provisional.
Length = 434
Score = 52.7 bits (127), Expect = 3e-09
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 11 GLGNPLLDISATVDASFLEKYNL-KANNAILADEKHKDLYEDLIKNNNVDY-IAGGSTQN 68
G+ L+DI A VD FLE+Y L K ++ ++ D+ + LY++L +NN + + AGG+ N
Sbjct: 38 GIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGN 97
Query: 69 TL 70
TL
Sbjct: 98 TL 99
>gnl|CDD|215434 PLN02813, PLN02813, pfkB-type carbohydrate kinase family protein.
Length = 426
Score = 35.9 bits (83), Expect = 0.002
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 9 LLGLGNPLLDISATVDASFLEKYNL-KANNAILADEKHKDLYEDLIKNNNVDY--IAGGS 65
+LGLG ++D S VD FLE+ L K ++ E+ + L + Y AGGS
Sbjct: 72 VLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRAL---DGCSYKASAGGS 128
Query: 66 TQNTL 70
NTL
Sbjct: 129 LSNTL 133
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase. This family
includes a variety of carbohydrate and pyrimidine
kinases.
Length = 298
Score = 28.9 bits (65), Expect = 0.48
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 25 ASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRVAQV 75
+ + + I E +L + V+ AGG+ N
Sbjct: 1 MTKIVVIGEANIDLIGRVEGL---EGELNRVKTVEKGAGGAGANVAVALAR 48
>gnl|CDD|220206 pfam09365, DUF2461, Conserved hypothetical protein (DUF2461).
Members of this family are widely (though sparsely)
distributed bacterial proteins, about 230 residues in
length. All members have a motif RxxRDxRFxxx[DN]KxxY.
The function of this protein family is unknown.
Length = 213
Score = 28.3 bits (64), Expect = 0.63
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 26 SFLEKYNLKANNAILAD----EKHKDLYEDLIKNNNVDYIA 62
FL L ANN + E HK YE ++ + +A
Sbjct: 6 DFLRD--LAANN----NREWFEAHKAEYEAEVREPFLALVA 40
>gnl|CDD|132000 TIGR02955, TMAO_TorT, TMAO reductase system periplasmic protein
TorT. Members of this family are the periplasmic
protein TorT which, together with the the TorS/TorR
histidine kinase/response regulator system, regulates
expression of the torCAD operon for trimethylamine
N-oxide reductase (TMAO reductase). It appears to bind
an inducer for TMAO reductase, and shows homology to a
periplasmic D-ribose binding protein.
Length = 295
Score = 28.2 bits (63), Expect = 0.96
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 38 AILADEKHKDLYEDLI-----KNNNVDYIAGGSTQNTLRVAQVKPVQMKSQISL 86
AIL + K+L +L+ K+ ++DY+ G + +++++ + M QI L
Sbjct: 160 AILWADNDKELQRNLLQDLLKKHPDIDYLVGSAVAAEAAISELRSLHMTQQIKL 213
>gnl|CDD|235613 PRK05802, PRK05802, hypothetical protein; Provisional.
Length = 320
Score = 27.2 bits (61), Expect = 1.9
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 27 FLEKYNLKANNAILAD-----EKHKDLYEDLIKNNNVDYI-AGGSTQNTLRVAQV 75
+LE YN++ L D E+ KD+ +++IK +++ I GGS ++ +
Sbjct: 218 YLELYNIEIIELNLLDDGELSEEGKDILKEIIKKEDINLIHCGGSDILHYKIIEY 272
>gnl|CDD|177506 PHA03003, PHA03003, palmytilated EEV membrane glycoprotein;
Provisional.
Length = 369
Score = 26.6 bits (59), Expect = 3.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 39 ILADEKHKDLYEDLIKNNNVDYI 61
IL DE+ D E+ ++++N++YI
Sbjct: 81 ILVDEQSGDKDEEELQSSNINYI 103
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 26.0 bits (58), Expect = 3.7
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 16 LLDISA-TVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYI 61
++DI+A ++++ + NL AN + DLY ++ D I
Sbjct: 60 MVDINARALESA---RANLAANGLENGEVFWSDLYSA-VEPGKFDLI 102
>gnl|CDD|235521 PRK05590, PRK05590, hypothetical protein; Provisional.
Length = 166
Score = 25.7 bits (57), Expect = 4.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 31 YNLKANNAILADEKHKDLYED 51
YNL AI ++EK K+++++
Sbjct: 112 YNLPQWEAIFSEEKRKEIHKE 132
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 26.1 bits (57), Expect = 5.2
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 16 LLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGS---------T 66
LL+ S + SF +NL+A++A +K + DLI I GGS
Sbjct: 15 LLNPSIKLIRSFSFYHNLEASSAPTHLKKKPRMVYDLI------VIGGGSGGMAAARRAA 68
Query: 67 QNTLRVAQVK 76
+N +VA V+
Sbjct: 69 RNKAKVALVE 78
>gnl|CDD|107333 cd06338, PBP1_ABC_ligand_binding_like_5, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that
are predicted to be involved in transport of amino
acids, peptides, or inorganic ions. This subgroup
includes the type I periplasmic ligand-binding domain
of uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. This subgroup has high sequence
similarity to members of the family of hydrophobic
amino acid transporters (HAAT); however their ligand
specificity has not been determined experimentally.
Length = 345
Score = 25.3 bits (56), Expect = 7.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 43 EKHKDLYEDLIKNNNVDYIAGG-STQNTLRVAQV 75
+ YE LI + VD++ G S+ TL A V
Sbjct: 57 ARAARAYERLITQDKVDFLLGPYSSGLTLAAAPV 90
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 25.4 bits (55), Expect = 8.2
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 82 SQISLRVQEEVKPVQMKSQIS--LRVQEE 108
S+ LR Q+E K QMKS IS + V+EE
Sbjct: 414 SEERLRRQQEEKDSQMKSIISRLMAVEEE 442
>gnl|CDD|235487 PRK05474, PRK05474, xylose isomerase; Provisional.
Length = 437
Score = 25.2 bits (56), Expect = 9.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 9/30 (30%)
Query: 20 SATVDASFLEKY--------NLKANNAILA 41
+ATV FL++Y N++AN+A LA
Sbjct: 245 AATVYG-FLKQYGLEKEFKLNIEANHATLA 273
>gnl|CDD|236778 PRK10859, PRK10859, membrane-bound lytic transglycosylase F;
Provisional.
Length = 482
Score = 25.2 bits (56), Expect = 9.2
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 47 DLYEDLIKNNNVDYIAGGSTQNTLRVAQVKP 77
L++ L D A G T R+ Q +
Sbjct: 92 QLFDAL-DKGKADLAAAGLTYTPERLKQFRF 121
>gnl|CDD|235240 PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.
Length = 456
Score = 25.1 bits (56), Expect = 9.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 42 DEKHKDLYEDLIKNNNVDY 60
EK +++Y +L K+ NVDY
Sbjct: 378 SEKAREIYAELRKDFNVDY 396
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.341
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,456,163
Number of extensions: 455400
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 36
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.7 bits)