RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6978
(112 letters)
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 114 bits (287), Expect = 3e-32
Identities = 45/74 (60%), Positives = 61/74 (82%)
Query: 1 MADVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDY 60
M VRE +L G+GNPLLDISA VD FL+KY+LK N+ ILA++KHK+L+++L+K V+Y
Sbjct: 1 MTSVRENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEY 60
Query: 61 IAGGSTQNTLRVAQ 74
AGGSTQN+++VAQ
Sbjct: 61 HAGGSTQNSIKVAQ 74
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi
tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles
gambiae}
Length = 365
Score = 110 bits (276), Expect = 2e-30
Identities = 44/74 (59%), Positives = 59/74 (79%)
Query: 1 MADVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDY 60
M +R+G+L+GLGNPLLDISA V+ L KY+++ NNAILA+EKH +Y++LI+ +Y
Sbjct: 18 MESLRDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEY 77
Query: 61 IAGGSTQNTLRVAQ 74
IAGGS QN+LRVAQ
Sbjct: 78 IAGGSVQNSLRVAQ 91
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase
inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB:
2xtb_A*
Length = 347
Score = 104 bits (261), Expect = 2e-28
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 9 LLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQN 68
+ NPLLD+SA V FL KY L+ AIL E+ K +++D+ K NV Y+ GGS N
Sbjct: 10 VYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLN 69
Query: 69 TLRVAQ 74
RVAQ
Sbjct: 70 VARVAQ 75
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate
conformation, signaling protein,transferase; HET: ACP;
1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A*
2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A*
1lik_A*
Length = 383
Score = 99.8 bits (249), Expect = 2e-26
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 9 LLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIAGGSTQN 68
+ +GNP+LD+ A V +SFL+++ LK +A LA + +Y L N + GGS N
Sbjct: 35 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTL-DQFNPTSLPGGSALN 93
Query: 69 TLRVAQ 74
++RV Q
Sbjct: 94 SVRVVQ 99
>4e3a_A Sugar kinase protein; structural genomics, protein structure
initiative, nysgrc, S kinase, PSI-biology; HET: ADN;
1.63A {Rhizobium etli} PDB: 3ubo_A*
Length = 352
Score = 50.7 bits (122), Expect = 6e-09
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 9 LLGLGNPLLDISATVDASFLEKYNLKANNAILAD-EKHKDLYEDLIKNNNVDYIAGGSTQ 67
+L +GN ++DI + + FL + L D E+ + LY + +GGS
Sbjct: 28 VLTVGNAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRM---GPALEASGGSAG 84
Query: 68 NTLR 71
NT
Sbjct: 85 NTAA 88
Score = 25.7 bits (57), Expect = 3.3
Identities = 6/26 (23%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 40 LAD----EKHKDLYEDLIKNNNVDYI 61
L+D ++++ + DL+++ VD +
Sbjct: 209 LSDSFCVDRYRGEFLDLMRSGKVDIV 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.077
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 19/64 (29%)
Query: 13 GNPLL---------DISATVDASFLEKYNLKA-NNAI------LADEKHKDLYEDL-IKN 55
NP D AT D + N I L +++ +++ L +
Sbjct: 325 TNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 56 NNVD 59
+
Sbjct: 383 PSAH 386
>2vha_A Periplasmic binding transport protein; periplasmic binding protein,
ligand binding, ultrahigh resolution; HET: GLU; 1.00A
{Shigella flexneri} PDB: 2ia4_A*
Length = 287
Score = 26.9 bits (60), Expect = 1.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 50 EDLIKNNNVDYIAGGSTQNTLRVAQV 75
L++N D+ G +T N R Q
Sbjct: 76 IPLLQNGTFDFECGSTTNNVERQKQA 101
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 26.2 bits (58), Expect = 2.5
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 11/54 (20%)
Query: 25 ASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVD--YIAGGSTQNTLRVAQVK 76
+F N K YE L+++ +D Y+ +L V
Sbjct: 45 KAFATANN------YPESTKIHGSYESLLEDPEIDALYVP---LPTSLHVEWAI 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 2.6
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 15 PLLDISATVD 24
P L I AT++
Sbjct: 38 PALAIKATME 47
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 26.0 bits (58), Expect = 3.2
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 49 YEDLIKNNNVDYIAG-GS--TQNTLRVAQVKPVQMKSQISLRVQE 90
Y + + VD G S ++N + + K K L +
Sbjct: 95 YRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEI 139
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A
{Streptococcus agalactiae serogroup V}
Length = 329
Score = 24.9 bits (55), Expect = 7.2
Identities = 5/16 (31%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 49 YEDLIKNNNVD--YIA 62
ED++ + ++D Y+A
Sbjct: 59 LEDMLADESIDVIYVA 74
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric
dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A
{Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Length = 334
Score = 24.9 bits (55), Expect = 7.6
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 49 YEDLIKNNNVD--YIAGGSTQNTLRVAQVK 76
YE+L K+ NV+ Y+ TQ+ A V
Sbjct: 58 YEELAKDPNVEVAYVG---TQHPQHKAAVM 84
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor,
periplasmic binding prote signaling protein; HET: PE4;
2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Length = 304
Score = 24.7 bits (54), Expect = 7.9
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 3 DVREGLLLGLGNPLLDISATVDASFLEKYNLKANNAILADEKHKDLYEDLIKNNNVDYIA 62
V G + N + I + A + E ++L + +I N+DYI
Sbjct: 153 PVTTGFYEAIKNSDIHIVDSFWADNDK-------------ELQRNLVQRVIDMGNIDYIV 199
Query: 63 G 63
G
Sbjct: 200 G 200
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II,
dimeric dihydodiol dehydrogenase, structural genomics;
2.70A {Enterococcus faecalis}
Length = 330
Score = 24.9 bits (55), Expect = 8.0
Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 49 YEDLIKNNNVD--YIA 62
YE+L K+ +D YI
Sbjct: 59 YEELCKDETIDIIYIP 74
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
1.55A {Bacteroides thetaiotaomicron}
Length = 451
Score = 24.9 bits (53), Expect = 8.0
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 17 LDISATVDASFLEKYNLKAN-NAILADEKHKDLYEDLIKNNNVDYIAGGSTQNTLRV 72
+DA++LE YN N + L + DL N + + + + +
Sbjct: 60 TSAKVKIDAAYLETYNKAHNTDFALYPQ---DLVT--FANEGILTVNANTKSAEVEM 111
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 24.6 bits (54), Expect = 8.1
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 49 YEDLIKNNNVD--YIAGGSTQNTLRVAQVK 76
Y L++ ++VD Y+ L +
Sbjct: 81 YPALLERDDVDAVYVP---LPAVLHAEWID 107
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 24.8 bits (55), Expect = 8.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 48 LYEDLIKNNNVDYIAG 63
YE+++ NNVD I G
Sbjct: 98 SYENVLGKNNVDVIKG 113
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 24.4 bits (54), Expect = 9.5
Identities = 1/16 (6%), Positives = 7/16 (43%)
Query: 48 LYEDLIKNNNVDYIAG 63
++ ++ + + G
Sbjct: 97 FWDGYVERLGITRVDG 112
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 24.8 bits (54), Expect = 9.8
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 50 EDLIKNNNVDYIAGG 64
I+ D I GG
Sbjct: 191 RQYIEETQPDVILGG 205
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 24.4 bits (54), Expect = 9.9
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 48 LYEDLIKNNNVDYIAG-GS--TQNTLRVAQVK 76
+ +++ V Y S ++T+R
Sbjct: 109 GHRVQLQDRKVKYFNIKASFVDEHTVRGVDKG 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.341
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,551,191
Number of extensions: 81758
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 31
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)