Query psy6979
Match_columns 167
No_of_seqs 191 out of 551
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:40:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3916|consensus 100.0 2.1E-35 4.6E-40 254.5 -0.8 88 79-166 180-267 (372)
2 KOG3916|consensus 99.9 5.1E-29 1.1E-33 215.1 0.6 101 26-128 269-371 (372)
3 cd00899 b4GalT Beta-4-Galactos 99.9 2.3E-27 5E-32 195.6 5.2 90 78-167 30-119 (219)
4 cd00899 b4GalT Beta-4-Galactos 99.9 3.5E-23 7.6E-28 170.8 1.4 113 6-124 105-219 (219)
5 PF13733 Glyco_transf_7N: N-te 99.8 3.5E-21 7.5E-26 148.3 1.3 61 79-139 76-136 (136)
6 PF02709 Glyco_transf_7C: N-te 99.7 7.7E-18 1.7E-22 118.6 1.4 64 7-75 14-78 (78)
7 KOG3917|consensus 99.6 3.6E-16 7.7E-21 130.0 2.5 83 80-166 104-188 (310)
8 KOG3917|consensus 99.3 3E-13 6.5E-18 112.7 0.2 89 19-107 184-276 (310)
9 PF10111 Glyco_tranf_2_2: Glyc 98.3 4.6E-07 9.9E-12 76.2 2.6 50 10-64 166-216 (281)
10 KOG3588|consensus 97.4 8.4E-05 1.8E-09 66.3 2.8 38 26-63 392-430 (494)
11 cd06420 GT2_Chondriotin_Pol_N 97.1 0.00034 7.3E-09 53.2 2.6 43 24-66 133-176 (182)
12 PF02709 Glyco_transf_7C: N-te 96.4 0.0023 5E-08 44.8 2.1 26 141-166 1-26 (78)
13 PF05679 CHGN: Chondroitin N-a 96.1 0.0043 9.2E-08 57.0 3.1 48 11-63 408-460 (499)
14 cd02510 pp-GalNAc-T pp-GalNAc- 96.1 0.0044 9.5E-08 51.9 2.9 35 30-64 185-219 (299)
15 COG4092 Predicted glycosyltran 94.9 0.012 2.6E-07 50.9 1.4 52 5-56 166-217 (346)
16 cd04186 GT_2_like_c Subfamily 92.1 0.12 2.6E-06 37.8 2.4 43 21-64 116-159 (166)
17 cd04184 GT2_RfbC_Mx_like Myxoc 91.8 0.12 2.6E-06 39.7 2.1 40 26-67 158-198 (202)
18 cd06913 beta3GnTL1_like Beta 1 91.5 0.17 3.7E-06 39.8 2.9 41 30-71 170-210 (219)
19 cd02526 GT2_RfbF_like RfbF is 89.0 0.17 3.7E-06 39.9 0.9 37 26-63 160-197 (237)
20 COG1216 Predicted glycosyltran 87.5 0.43 9.4E-06 40.3 2.5 44 29-74 180-223 (305)
21 TIGR01556 rhamnosyltran L-rham 87.0 0.52 1.1E-05 38.8 2.6 34 30-64 162-195 (281)
22 cd04185 GT_2_like_b Subfamily 87.0 0.37 8E-06 37.2 1.7 33 26-59 130-163 (202)
23 cd02522 GT_2_like_a GT_2_like_ 86.7 0.33 7.1E-06 37.8 1.2 36 23-61 142-178 (221)
24 cd04195 GT2_AmsE_like GT2_AmsE 81.7 1 2.2E-05 34.5 2.0 38 26-66 159-197 (201)
25 cd06435 CESA_NdvC_like NdvC_li 81.5 0.94 2E-05 35.8 1.8 36 26-64 167-203 (236)
26 cd02525 Succinoglycan_BP_ExoA 75.1 4 8.7E-05 31.9 3.6 39 26-66 165-204 (249)
27 cd06421 CESA_CelA_like CESA_Ce 73.6 2.5 5.5E-05 32.9 2.2 36 26-64 169-205 (234)
28 cd06437 CESA_CaSu_A2 Cellulose 72.9 2.9 6.2E-05 33.1 2.3 37 25-64 169-207 (232)
29 PF13632 Glyco_trans_2_3: Glyc 71.6 2.8 6.1E-05 32.2 2.0 34 30-65 86-119 (193)
30 PLN02923 xylose isomerase 70.9 2.7 5.9E-05 38.6 1.9 23 108-130 130-152 (478)
31 PRK05474 xylose isomerase; Pro 70.3 2.7 5.7E-05 38.5 1.7 23 108-130 86-108 (437)
32 TIGR02630 xylose_isom_A xylose 69.5 2.8 6.1E-05 38.3 1.7 23 108-130 85-107 (434)
33 cd06433 GT_2_WfgS_like WfgS an 67.8 4.1 9E-05 30.4 2.1 36 30-67 156-191 (202)
34 PRK14583 hmsR N-glycosyltransf 67.4 4.5 9.7E-05 36.2 2.6 36 26-64 239-275 (444)
35 PRK12465 xylose isomerase; Pro 66.8 3.9 8.4E-05 37.4 2.0 23 108-130 96-118 (445)
36 PRK11204 N-glycosyltransferase 63.7 6.6 0.00014 34.3 2.9 37 26-65 218-255 (420)
37 cd02520 Glucosylceramide_synth 63.1 2.9 6.3E-05 32.4 0.5 38 26-64 133-171 (196)
38 PF13641 Glyco_tranf_2_3: Glyc 57.3 5.9 0.00013 30.9 1.3 34 26-62 168-202 (228)
39 KOG3736|consensus 56.5 2.4 5.2E-05 40.1 -1.2 44 16-63 318-362 (578)
40 COG2115 XylA Xylose isomerase 54.2 9.7 0.00021 34.2 2.2 23 108-130 89-111 (438)
41 PF10111 Glyco_tranf_2_2: Glyc 52.7 10 0.00022 31.7 2.1 34 92-129 70-103 (281)
42 cd06427 CESA_like_2 CESA_like_ 52.2 6.7 0.00015 31.3 0.9 36 24-62 168-204 (241)
43 cd04192 GT_2_like_e Subfamily 45.1 24 0.00051 27.1 3.0 34 26-60 164-199 (229)
44 PF13712 Glyco_tranf_2_5: Glyc 42.7 21 0.00045 29.1 2.4 31 33-63 160-191 (217)
45 PRK10063 putative glycosyl tra 41.7 21 0.00046 29.4 2.3 40 30-71 158-197 (248)
46 TIGR03469 HonB hopene-associat 35.2 16 0.00035 31.9 0.7 36 26-62 218-254 (384)
47 TIGR03472 HpnI hopanoid biosyn 33.3 13 0.00028 32.3 -0.2 38 25-63 208-246 (373)
48 cd00761 Glyco_tranf_GTA_type G 33.1 28 0.00061 23.9 1.6 28 30-58 126-153 (156)
49 PF07312 DUF1459: Protein of u 31.1 18 0.00039 25.8 0.2 14 31-44 52-65 (84)
50 PRK10018 putative glycosyl tra 29.8 66 0.0014 27.2 3.5 40 30-71 168-207 (279)
51 COG1215 Glycosyltransferases, 29.1 67 0.0015 27.7 3.5 33 30-65 228-260 (439)
52 TIGR03030 CelA cellulose synth 28.4 58 0.0013 31.3 3.3 34 26-62 316-350 (713)
53 cd04191 Glucan_BSP_ModH Glucan 25.3 65 0.0014 26.8 2.7 41 26-66 180-227 (254)
54 TIGR03111 glyc2_xrt_Gpos1 puta 23.4 74 0.0016 28.4 2.8 38 24-64 222-261 (439)
55 PRK11498 bcsA cellulose syntha 22.8 51 0.0011 32.8 1.8 34 26-62 427-461 (852)
No 1
>KOG3916|consensus
Probab=100.00 E-value=2.1e-35 Score=254.50 Aligned_cols=88 Identities=56% Similarity=1.023 Sum_probs=84.2
Q ss_pred CCCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCCcceeeeeecccccccCCCCc
Q psy6979 79 ANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYAS 158 (167)
Q Consensus 79 ~Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~~p~Hls~~~~~~~y~~~y~~ 158 (167)
+-.++.|++++|.++++||||+|||+||.||++...||||+||||||+||||||+|+|+++|||+|+++|+|+|+|||.+
T Consensus 180 QrL~y~iyVieQ~g~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPenDrNlY~C~~~PRH~sva~dk~gy~LPY~~ 259 (372)
T KOG3916|consen 180 QRLDYRIYVIEQAGNKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDRNLYGCPEQPRHMSVALDKFGYRLPYKE 259 (372)
T ss_pred hhhceeEEEEEecCCCcccHHHhhhhHHHHHHHhcCCCEEEEecccccccCCCCccCCCCCCcchhhhhhhccccccchh
Confidence 33456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeee
Q psy6979 159 LFGGVSNI 166 (167)
Q Consensus 159 ~~GGv~~~ 166 (167)
+||||+||
T Consensus 260 ~FGGVsal 267 (372)
T KOG3916|consen 260 YFGGVSAL 267 (372)
T ss_pred hhCchhhc
Confidence 99999997
No 2
>KOG3916|consensus
Probab=99.94 E-value=5.1e-29 Score=215.08 Aligned_cols=101 Identities=37% Similarity=0.659 Sum_probs=89.0
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeeccccccccCCCCCCcccccccCC-cccccccchh
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEG-HPFNRASLFN 103 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H~~d~~Npq~~~~v~~q~~~-~~fNR~~LlN 103 (167)
+++. +||||||.|||||||||||..|+..+|++|.||+.++|||+||+|. ++.|+++..|+..+... .++-+++|.|
T Consensus 269 ~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~igrYkMikH~-~k~n~~n~~Ry~lL~~tk~r~~~DGLns 347 (372)
T KOG3916|consen 269 KEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPEIGRYKMIKHH-DKGNEPNPGRYKLLRNTKERQTQDGLNS 347 (372)
T ss_pred HHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCccceeEEeecc-cccCCCChHHHHHHHhhhhhhhhccccc
Confidence 3444 9999999999999999999999999999999999999999999998 88888998888887755 5566666666
Q ss_pred hhHHHHHhhCCcCeEEEEeeccccc
Q psy6979 104 VGYAEAIKIREFDCFIFHDVDLIPE 128 (167)
Q Consensus 104 vg~~eal~~~~~~~~~~hdVDLlP~ 128 (167)
+-|. .++++..|+||++.||+.|+
T Consensus 348 l~Y~-~~~v~~~pLyt~itVDl~~~ 371 (372)
T KOG3916|consen 348 LKYQ-LLKVELDPLYTNITVDLGPE 371 (372)
T ss_pred eeee-eeeeecccceEEEEEecccC
Confidence 7776 67899999999999999886
No 3
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=99.94 E-value=2.3e-27 Score=195.61 Aligned_cols=90 Identities=49% Similarity=0.918 Sum_probs=84.7
Q ss_pred cCCCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCCcceeeeeecccccccCCCC
Q psy6979 78 KANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYA 157 (167)
Q Consensus 78 ~~Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~~p~Hls~~~~~~~y~~~y~ 157 (167)
.++.++.+++++|.++.+||||.|+|+||.||++...++|++||||||+|+|++|.|+|+++|+|+|+++++|+|++||+
T Consensus 30 rq~~~~~i~vi~Q~~~~~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y~~~~~p~H~s~~~~~~~~~lpy~ 109 (219)
T cd00899 30 RQQLDYRIFVIEQVGNFRFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLYGCEEGPRHLSVPLDKFHYKLPYK 109 (219)
T ss_pred hcCCcEEEEEEEecCCccchhhhhhhHHHHHHhhcCCccEEEEecccccccCccccccCCCCCeEEEEeecccccccCcc
Confidence 34556678999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred cceeeeeeeC
Q psy6979 158 SLFGGVSNIY 167 (167)
Q Consensus 158 ~~~GGv~~~~ 167 (167)
+++||++++.
T Consensus 110 ~~~Gg~~~~~ 119 (219)
T cd00899 110 TYFGGVLALT 119 (219)
T ss_pred cccccceeeE
Confidence 9999999873
No 4
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=99.86 E-value=3.5e-23 Score=170.82 Aligned_cols=113 Identities=34% Similarity=0.556 Sum_probs=93.5
Q ss_pred ccceeEEeeeceeeEeeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeeccccccccCCCCCC
Q psy6979 6 QIDYTIFIIEQEVEVPTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSS 84 (167)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H~~d~~Npq~~ 84 (167)
.+||..++. |+++++ ++|+ +||||||.|||||+||+||..||..+|+++.|++..++||.|++|.++..++++.
T Consensus 105 ~lpy~~~~G-g~~~~~----k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~~~~~~hL~H~~~~r~~~N~ 179 (219)
T cd00899 105 KLPYKTYFG-GVLALT----REQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRYKMIRHIHDKRNRDNP 179 (219)
T ss_pred ccCcccccc-cceeeE----HHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCcccceeeeecCCCcccccCH
Confidence 456777666 777777 8888 9999999999999999999999999999999999999999999999887666776
Q ss_pred cccccccC-CcccccccchhhhHHHHHhhCCcCeEEEEeec
Q psy6979 85 FFPHSISE-GHPFNRASLFNVGYAEAIKIREFDCFIFHDVD 124 (167)
Q Consensus 85 ~~v~~q~~-~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVD 124 (167)
.+...... ..++...+|.++.|. .++....|+||++.||
T Consensus 180 ~r~~~l~~~~~~~~~dGLnsl~Y~-v~~~~~~pl~t~i~vd 219 (219)
T cd00899 180 NRFALLQNSRERDHSDGLNSLKYK-VLSIELAPLYTNILVD 219 (219)
T ss_pred HHHHHHHhhCeEeccCCccceEEE-EEEEeccccEEEEEeC
Confidence 66655554 455566666666666 6788899999999997
No 5
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=99.81 E-value=3.5e-21 Score=148.30 Aligned_cols=61 Identities=52% Similarity=0.952 Sum_probs=45.4
Q ss_pred CCCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCCc
Q psy6979 79 ANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGM 139 (167)
Q Consensus 79 ~Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~~ 139 (167)
+...+.|++++|.++.+||||+|||+||.||++...||||+||||||+|||++|+|+|+++
T Consensus 76 Q~~~y~I~vieQ~~~~~FNRg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~~n~Y~C~~~ 136 (136)
T PF13733_consen 76 QQLDYRIFVIEQVDNGPFNRGKLMNVGFLEALKDDDFDCFIFHDVDLLPENDRNLYTCDEQ 136 (136)
T ss_dssp TT-EEEEEEEEE-SSS---HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBTTS-SS----
T ss_pred CcceEEEEEEeeccCCCCchhhhhhHHHHHHhhccCCCEEEEecccccccCCCceeeCCCC
Confidence 4456679999999999999999999999999999899999999999999999999999863
No 6
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=99.68 E-value=7.7e-18 Score=118.57 Aligned_cols=64 Identities=42% Similarity=0.883 Sum_probs=49.1
Q ss_pred cceeEEeeeceeeEeeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeeccccc
Q psy6979 7 IDYTIFIIEQEVEVPTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHR 75 (167)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H~ 75 (167)
.+|..++. ++++++ ++++ +||||||.|||||+||+||..|+..+|+++.|.+..+.+|+|++|+
T Consensus 14 ~~~~~~~G-g~~~~~----~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~~H~ 78 (78)
T PF02709_consen 14 YPYPNFFG-GVFAIS----REDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLWKHK 78 (78)
T ss_dssp -SSTT----SEEEEE----HHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEEET-
T ss_pred CcCCCeeE-EEEEEe----HHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEeecC
Confidence 45655666 888888 8888 9999999999999999999999999999999998899999999884
No 7
>KOG3917|consensus
Probab=99.59 E-value=3.6e-16 Score=130.02 Aligned_cols=83 Identities=34% Similarity=0.582 Sum_probs=75.8
Q ss_pred CCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCC--cceeeeeecccccccCCCC
Q psy6979 80 NPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPG--MPRHMSVAVDSMNYRLPYA 157 (167)
Q Consensus 80 Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~--~p~Hls~~~~~~~y~~~y~ 157 (167)
|....|++.+|.+..+|||+.|.|+||.||.. .+|+.++|||||+|.|+..+|..|. .|+|++++ +++++++|+
T Consensus 104 ~v~HHI~vlNQvD~fRFNRAsLINVGf~eas~--~~DYiaMhDVDLLPlN~el~Y~fP~~~gp~HiasP--~lHPkYHY~ 179 (310)
T KOG3917|consen 104 NVSHHILVLNQVDPFRFNRASLINVGFNEASR--LCDYIAMHDVDLLPLNPELPYDFPGIGGPRHIASP--QLHPKYHYE 179 (310)
T ss_pred CcceEEEEeeccCcceechhhheecchhhhcc--hhceeeecccccccCCCCCCCCCCccCCcccccCc--ccCchhhhh
Confidence 33446889999999999999999999999853 5899999999999999999999996 89999999 899999999
Q ss_pred cceeeeeee
Q psy6979 158 SLFGGVSNI 166 (167)
Q Consensus 158 ~~~GGv~~~ 166 (167)
.|.||++.+
T Consensus 180 ~fvGGILll 188 (310)
T KOG3917|consen 180 KFVGGILLL 188 (310)
T ss_pred hhcceeEEe
Confidence 999999876
No 8
>KOG3917|consensus
Probab=99.31 E-value=3e-13 Score=112.67 Aligned_cols=89 Identities=27% Similarity=0.411 Sum_probs=68.4
Q ss_pred eEeeecCCCCcccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceee-eccccccccCCCCCCc-ccccccC--Cc
Q psy6979 19 EVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKY-SMLRHRKEKANPQSSF-FPHSISE--GH 94 (167)
Q Consensus 19 ~v~~~~~~~~~~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY-~ml~H~~d~~Npq~~~-~v~~q~~--~~ 94 (167)
+|+++.-++..+.||+||.|||||.|||||..|+..+|+++.||+....-+ .+++|.|++..++++. +..+|+. .+
T Consensus 184 GILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltRpsgi~Tg~~~TFrHiH~p~~RKRD~k~~~nQke~~rK 263 (310)
T KOG3917|consen 184 GILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTRPSGISTGSSNTFRHIHGPKHRKRDKKNDKNQKEIKRK 263 (310)
T ss_pred eeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEecccCcccCccchhhhhcChhhhhhhhhhhhhHHHHHhh
Confidence 567777677679999999999999999999999999999999998754444 8899998887666652 3344442 23
Q ss_pred ccccccchhhhHH
Q psy6979 95 PFNRASLFNVGYA 107 (167)
Q Consensus 95 ~fNR~~LlNvg~~ 107 (167)
+=-.++|-++.|.
T Consensus 264 rDh~~GL~~VkY~ 276 (310)
T KOG3917|consen 264 RDHVSGLHDVKYL 276 (310)
T ss_pred hcccccccceeee
Confidence 3345677777776
No 9
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.27 E-value=4.6e-07 Score=76.23 Aligned_cols=50 Identities=32% Similarity=0.560 Sum_probs=39.8
Q ss_pred eEEeeeceeeEeeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 10 TIFIIEQEVEVPTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 10 ~~~~~~~~~~v~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
..+.+ +...|. +++. +|+||+|+|-|||+||.||..||..+|.++.+++.
T Consensus 166 ~~~~s-~~~~i~----r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~ 216 (281)
T PF10111_consen 166 IAFAS-SCFLIN----REDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPD 216 (281)
T ss_pred ccccc-eEEEEE----HHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChH
Confidence 34444 444444 6666 99999999999999999999999999988887643
No 10
>KOG3588|consensus
Probab=97.44 E-value=8.4e-05 Score=66.32 Aligned_cols=38 Identities=45% Similarity=0.796 Sum_probs=35.4
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 63 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~ 63 (167)
+.|+ .|.||+..-.|||+||.|+......+|++++|.+
T Consensus 392 rsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p 430 (494)
T KOG3588|consen 392 RSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTP 430 (494)
T ss_pred eccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecC
Confidence 5667 9999999999999999999999999999999964
No 11
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=97.11 E-value=0.00034 Score=53.17 Aligned_cols=43 Identities=37% Similarity=0.793 Sum_probs=36.3
Q ss_pred cCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCc
Q psy6979 24 PWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDI 66 (167)
Q Consensus 24 ~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i 66 (167)
.++++. +++||++.|.+||+||.|+..|+.++|++..+..+..
T Consensus 133 ~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~ 176 (182)
T cd06420 133 FWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAA 176 (182)
T ss_pred EEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccc
Confidence 346666 8999999999999999999999999998888754433
No 12
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=96.37 E-value=0.0023 Score=44.83 Aligned_cols=26 Identities=50% Similarity=1.050 Sum_probs=21.1
Q ss_pred eeeeeecccccccCCCCcceeeeeee
Q psy6979 141 RHMSVAVDSMNYRLPYASLFGGVSNI 166 (167)
Q Consensus 141 ~Hls~~~~~~~y~~~y~~~~GGv~~~ 166 (167)
||||..+++++++++|..++||++++
T Consensus 1 rh~~~~~~~~~~~~~~~~~~Gg~~~~ 26 (78)
T PF02709_consen 1 RHLSPSIDEFNYKYPYPNFFGGVFAI 26 (78)
T ss_dssp EEEETEEGGGTSS-SSTT---SEEEE
T ss_pred CCeeeccCcccCcCcCCCeeEEEEEE
Confidence 79999999999999999999999987
No 13
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=96.12 E-value=0.0043 Score=57.01 Aligned_cols=48 Identities=31% Similarity=0.519 Sum_probs=40.7
Q ss_pred EEeeeceeeEeeecCCCCc-cc--CCCCCCCCCCCCCChHHHHHHHhcC--cceeeCC
Q psy6979 11 IFIIEQEVEVPTVPWDKDQ-LV--NGFSNEYWGWGGEDDDMSNRVKAAG--LQIIRYP 63 (167)
Q Consensus 11 ~~~~~~~~~v~~~~~~~~~-~v--NGf~n~~wgwG~ED~d~~~R~~~~g--~~~~r~~ 63 (167)
.|-+ |.+++- +.|. ++ .||+..-.|||+||.||..++..+| +.+.|.+
T Consensus 408 ~~gf-g~~~~Y----ksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ 460 (499)
T PF05679_consen 408 RFGF-GMVCFY----KSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAV 460 (499)
T ss_pred cCCC-ceEEEE----hhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEcc
Confidence 3444 556666 8888 88 9999999999999999999999999 9999953
No 14
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=96.11 E-value=0.0044 Score=51.88 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=31.9
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
+|+||++.|..||+||.|+..|+..+|.++.-.|.
T Consensus 185 ~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~ 219 (299)
T cd02510 185 ELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC 219 (299)
T ss_pred HhCCCCCcccccCchhHHHHHHHHHcCCeEEEeec
Confidence 89999999999999999999999999999876543
No 15
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=94.95 E-value=0.012 Score=50.92 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=41.7
Q ss_pred cccceeEEeeeceeeEeeecCCCCcccCCCCCCCCCCCCCChHHHHHHHhcC
Q psy6979 5 QQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAG 56 (167)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~~~~~vNGf~n~~wgwG~ED~d~~~R~~~~g 56 (167)
+.=.|..|++|--.++.++-.+...+..||+|+|.|.|.||-||..|+..+-
T Consensus 166 ~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~~ 217 (346)
T COG4092 166 EFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLYI 217 (346)
T ss_pred HhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHHH
Confidence 3445777887666677767666666999999999999999999999987654
No 16
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.09 E-value=0.12 Score=37.78 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=33.9
Q ss_pred eeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 21 PTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 21 ~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
..+..++.. +++||++.|-. ++||.|+..|+...|.++...+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 116 FLLVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVPQ 159 (166)
T ss_pred eEeeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEccc
Confidence 334445555 79999998876 77999999999999999877544
No 17
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=91.75 E-value=0.12 Score=39.69 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCce
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIA 67 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~ 67 (167)
++-+ +++||++.|- ++||.|+..|+..+|.++..-+..+.
T Consensus 158 r~~~~~iggf~~~~~--~~eD~~l~~rl~~~g~~~~~~~~~~~ 198 (202)
T cd04184 158 RSLVRQVGGFREGFE--GAQDYDLVLRVSEHTDRIAHIPRVLY 198 (202)
T ss_pred HHHHHHhCCCCcCcc--cchhHHHHHHHHhccceEEEccHhhh
Confidence 4434 8999999865 68999999999999998887655443
No 18
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=91.52 E-value=0.17 Score=39.84 Aligned_cols=41 Identities=20% Similarity=0.044 Sum_probs=33.6
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeec
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSM 71 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~m 71 (167)
+++||++.+.++ +||.||..|+..+|.++..-+.....|+.
T Consensus 170 ~~g~f~~~~~~~-~eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 170 HVGPFDEGGKGV-PEDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred hcCCccchhccc-hhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 899999987655 49999999999999999887665665554
No 19
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.01 E-value=0.17 Score=39.88 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=30.2
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 63 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~ 63 (167)
++.+ +++||++.+- .++||.|+..|+..+|.++...+
T Consensus 160 r~~~~~~ggfd~~~~-~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 160 LEALEKVGGFDEDLF-IDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred HHHHHHhCCCCHHHc-CccchHHHHHHHHHcCCcEEEEc
Confidence 4434 8999998875 67899999999999998887643
No 20
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=87.51 E-value=0.43 Score=40.33 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=33.1
Q ss_pred cccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeecccc
Q psy6979 29 QLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRH 74 (167)
Q Consensus 29 ~~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H 74 (167)
.+|+||++.|-.+ .||.|++.|++.+|+++...+. ...++...+
T Consensus 180 ~~vG~~de~~F~y-~eD~D~~~R~~~~G~~i~~~p~-a~i~H~~g~ 223 (305)
T COG1216 180 EKVGGFDERFFIY-YEDVDLCLRARKAGYKIYYVPD-AIIYHKIGS 223 (305)
T ss_pred HHhCCCCccccee-ehHHHHHHHHHHcCCeEEEeec-cEEEEeccC
Confidence 3899999998766 6899999999999998877533 333344444
No 21
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=87.04 E-value=0.52 Score=38.84 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=29.6
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
+|+||+++|..+ +||.|+..|+..+|.++...+.
T Consensus 162 ~iG~fde~~fi~-~~D~e~~~R~~~~G~~i~~~~~ 195 (281)
T TIGR01556 162 RLGMMDEELFID-HVDTEWSLRAQNYGIPLYIDPD 195 (281)
T ss_pred HhCCccHhhccc-chHHHHHHHHHHCCCEEEEeCC
Confidence 799999999766 4999999999999999887543
No 22
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.02 E-value=0.37 Score=37.17 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=28.0
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcce
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQI 59 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~ 59 (167)
++.+ +++||.+.|..|| ||.|+..|+..+|.++
T Consensus 130 ~~~~~~~g~~~~~~~~~~-eD~~~~~r~~~~G~~i 163 (202)
T cd04185 130 RRVVEKIGLPDKEFFIWG-DDTEYTLRASKAGPGI 163 (202)
T ss_pred HHHHHHhCCCChhhhccc-hHHHHHHHHHHcCCcE
Confidence 3444 7889998887776 9999999999999999
No 23
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.74 E-value=0.33 Score=37.76 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=29.3
Q ss_pred ecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceee
Q psy6979 23 VPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR 61 (167)
Q Consensus 23 ~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r 61 (167)
+..++.. ++.||++.+ .+||.||..|+..+|.++.-
T Consensus 142 ~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~~~~~ 178 (221)
T cd02522 142 FIRRELFEELGGFPELP---LMEDVELVRRLRRRGRPALL 178 (221)
T ss_pred EEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCCEEEc
Confidence 3334444 899999998 78999999999999977764
No 24
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=81.68 E-value=1 Score=34.52 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=29.7
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCc
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDI 66 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i 66 (167)
++.. +++||++. .++||.++..|+..+|.++..-+...
T Consensus 159 r~~~~~~g~~~~~---~~~eD~~~~~r~~~~g~~~~~~~~~~ 197 (201)
T cd04195 159 KSKVLAVGGYQDL---PLVEDYALWARMLANGARFANLPEIL 197 (201)
T ss_pred HHHHHHcCCcCCC---CCchHHHHHHHHHHcCCceecccHHH
Confidence 3434 79999875 78999999999999998887654433
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=81.55 E-value=0.94 Score=35.77 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=29.6
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
++-+ +++||++.+ ..||.|+..|+...|.++.-.+.
T Consensus 167 r~~~~~iGgf~~~~---~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 167 RSALDDVGGWDEWC---ITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred HHHHHHhCCCCCcc---ccchHHHHHHHHHCCcEEEEcch
Confidence 4444 899999875 47999999999999999887654
No 26
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=75.06 E-value=4 Score=31.93 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=30.6
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCc
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDI 66 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i 66 (167)
++.+ +++||++.+- .+||.||..|+..+|.++...+...
T Consensus 165 ~~~~~~~g~~~~~~~--~~eD~~l~~r~~~~G~~~~~~~~~~ 204 (249)
T cd02525 165 REVFEKVGGFDESLV--RNEDAELNYRLRKAGYKIWLSPDIR 204 (249)
T ss_pred HHHHHHhCCCCcccC--ccchhHHHHHHHHcCcEEEEcCCeE
Confidence 3444 7899998775 3799999999999999998754433
No 27
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=73.63 E-value=2.5 Score=32.89 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=28.8
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
++-+ +++||++.+. .||.++..|+..+|.++...+.
T Consensus 169 ~~~~~~ig~~~~~~~---~eD~~l~~r~~~~g~~i~~~~~ 205 (234)
T cd06421 169 REALDEIGGFPTDSV---TEDLATSLRLHAKGWRSVYVPE 205 (234)
T ss_pred HHHHHHhCCCCccce---eccHHHHHHHHHcCceEEEecC
Confidence 4444 8999997654 6999999999999998876544
No 28
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=72.87 E-value=2.9 Score=33.09 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=29.2
Q ss_pred CCCC-c-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 25 WDKD-Q-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 25 ~~~~-~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
++++ + +++||++.. ..||.||..|+..+|.++...+.
T Consensus 169 ~rr~~~~~vgg~~~~~---~~ED~~l~~rl~~~G~~~~~~~~ 207 (232)
T cd06437 169 WRKECIEDAGGWNHDT---LTEDLDLSYRAQLKGWKFVYLDD 207 (232)
T ss_pred hhHHHHHHhCCCCCCc---chhhHHHHHHHHHCCCeEEEecc
Confidence 3444 4 899999865 36999999999999988887543
No 29
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=71.64 E-value=2.8 Score=32.15 Aligned_cols=34 Identities=35% Similarity=0.623 Sum_probs=26.9
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCC
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPD 65 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~ 65 (167)
+|.||+ ...-.+ ||.|+..|+..+|.++...+..
T Consensus 86 ~vg~~~-~~~~~~-ED~~l~~~l~~~G~~~~~~~~~ 119 (193)
T PF13632_consen 86 EVGGFD-DPFSIG-EDMDLGFRLRRAGYRIVYVPDA 119 (193)
T ss_pred HhCccc-cccccc-chHHHHHHHHHCCCEEEEeccc
Confidence 788999 444444 9999999999999888775443
No 30
>PLN02923 xylose isomerase
Probab=70.87 E-value=2.7 Score=38.59 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.5
Q ss_pred HHHhhCCcCeEEEEeecccccCC
Q psy6979 108 EAIKIREFDCFIFHDVDLIPEDD 130 (167)
Q Consensus 108 eal~~~~~~~~~~hdVDLlP~~~ 130 (167)
|.+...+.+.|+|||+|+.||.+
T Consensus 130 Ef~~kLG~~y~cFHD~Dl~Peg~ 152 (478)
T PLN02923 130 EFLKKLGVDRWCFHDRDIAPDGK 152 (478)
T ss_pred HHHHHhCCCeEccCccccCCCCC
Confidence 35567799999999999999875
No 31
>PRK05474 xylose isomerase; Provisional
Probab=70.31 E-value=2.7 Score=38.51 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=19.7
Q ss_pred HHHhhCCcCeEEEEeecccccCC
Q psy6979 108 EAIKIREFDCFIFHDVDLIPEDD 130 (167)
Q Consensus 108 eal~~~~~~~~~~hdVDLlP~~~ 130 (167)
|.+...+.+.|+|||+|+.|+.+
T Consensus 86 e~~~kLg~~~~~FHD~D~~peg~ 108 (437)
T PRK05474 86 EFFTKLGVPYYCFHDVDVAPEGA 108 (437)
T ss_pred HHHHHhCCCeeccCccccCCCCC
Confidence 35567899999999999999885
No 32
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=69.52 E-value=2.8 Score=38.28 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.6
Q ss_pred HHHhhCCcCeEEEEeecccccCC
Q psy6979 108 EAIKIREFDCFIFHDVDLIPEDD 130 (167)
Q Consensus 108 eal~~~~~~~~~~hdVDLlP~~~ 130 (167)
|.+...+.+.|+|||+|+.|+.+
T Consensus 85 ef~~kLg~~~~~FHD~D~~peg~ 107 (434)
T TIGR02630 85 EFFEKLGVPYYCFHDRDIAPEGA 107 (434)
T ss_pred HHHHHhCCCeeccCccccCCCCC
Confidence 35567899999999999999875
No 33
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=67.81 E-value=4.1 Score=30.41 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=27.7
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCce
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIA 67 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~ 67 (167)
+++||++.+- + +||.|+..|+..+|.++.-.+..+.
T Consensus 156 ~~~~f~~~~~-~-~~D~~~~~r~~~~g~~~~~~~~~~~ 191 (202)
T cd06433 156 KYGGFDESYR-I-AADYDLLLRLLLAGKIFKYLPEVLA 191 (202)
T ss_pred HhCCCchhhC-c-hhhHHHHHHHHHcCCceEecchhhh
Confidence 7999998875 3 4799999999999988864433333
No 34
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=67.40 E-value=4.5 Score=36.17 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=29.1
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
++.+ +++||+++.- .||.|++.|+..+|.++.-.+.
T Consensus 239 r~al~~vGg~~~~~i---~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 239 RRALADVGYWSPDMI---TEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred HHHHHHcCCCCCCcc---cccHHHHHHHHHcCCeEEEeec
Confidence 4455 8999998764 6999999999999998876443
No 35
>PRK12465 xylose isomerase; Provisional
Probab=66.83 E-value=3.9 Score=37.45 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=19.5
Q ss_pred HHHhhCCcCeEEEEeecccccCC
Q psy6979 108 EAIKIREFDCFIFHDVDLIPEDD 130 (167)
Q Consensus 108 eal~~~~~~~~~~hdVDLlP~~~ 130 (167)
|.....+.+.|+|||+|+.|+.+
T Consensus 96 Ef~~kLG~~~~~FHD~D~~Peg~ 118 (445)
T PRK12465 96 EFFTKLGVPYYCFHDIDLAPDAD 118 (445)
T ss_pred HHHHHhCCCeeeccccccCCCCC
Confidence 35567799999999999999875
No 36
>PRK11204 N-glycosyltransferase; Provisional
Probab=63.66 E-value=6.6 Score=34.31 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=29.5
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPD 65 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~ 65 (167)
++.+ +++||++..- +||.|+..|+..+|.++.-.+..
T Consensus 218 r~~l~~vgg~~~~~~---~ED~~l~~rl~~~G~~i~~~p~~ 255 (420)
T PRK11204 218 KSALHEVGYWSTDMI---TEDIDISWKLQLRGWDIRYEPRA 255 (420)
T ss_pred HHHHHHhCCCCCCcc---cchHHHHHHHHHcCCeEEecccc
Confidence 4444 8999998764 69999999999999998775443
No 37
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=63.15 E-value=2.9 Score=32.37 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
++.. +++||+. +-...+||.|+..|+..+|.++.-.+.
T Consensus 133 ~~~~~~~ggf~~-~~~~~~eD~~l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 133 REVLDAIGGFEA-FADYLAEDYFLGKLIWRLGYRVVLSPY 171 (196)
T ss_pred HHHHHhccChHH-HhHHHHHHHHHHHHHHHcCCeEEEcch
Confidence 4434 7999975 333457999999999999998876533
No 38
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=57.32 E-value=5.9 Score=30.90 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
+..+ +++||+. ...+||.|+..|+..+|.++...
T Consensus 168 r~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~~~ 202 (228)
T PF13641_consen 168 RSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIVYA 202 (228)
T ss_dssp HHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEEEE
Confidence 4444 8999998 34459999999999999998874
No 39
>KOG3736|consensus
Probab=56.47 E-value=2.4 Score=40.10 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=37.4
Q ss_pred ceeeEeeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979 16 QEVEVPTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 63 (167)
Q Consensus 16 ~~~~v~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~ 63 (167)
|..+|. ++.+ .+.+|++..-.||||.-||+.|+...|-++.-.|
T Consensus 318 glFAI~----r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~P 362 (578)
T KOG3736|consen 318 GLFAID----RKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVP 362 (578)
T ss_pred ceEEee----HHHHhhccCccccccccChhhceeeEEEeccCCeEEecC
Confidence 455666 6666 8999999999999999999999999998886643
No 40
>COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism]
Probab=54.17 E-value=9.7 Score=34.18 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=18.7
Q ss_pred HHHhhCCcCeEEEEeecccccCC
Q psy6979 108 EAIKIREFDCFIFHDVDLIPEDD 130 (167)
Q Consensus 108 eal~~~~~~~~~~hdVDLlP~~~ 130 (167)
|.....+-|.|.|||||+.||..
T Consensus 89 Eff~kL~vpyyCFHD~DvaPeG~ 111 (438)
T COG2115 89 EFFEKLGVPYYCFHDVDVAPEGA 111 (438)
T ss_pred HHHHHhCCCeEeecccccCCCcc
Confidence 44456788999999999999763
No 41
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=52.72 E-value=10 Score=31.71 Aligned_cols=34 Identities=44% Similarity=0.651 Sum_probs=28.8
Q ss_pred CCcccccccchhhhHHHHHhhCCcCeEEEEeecccccC
Q psy6979 92 EGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPED 129 (167)
Q Consensus 92 ~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~ 129 (167)
.+..|+++...|.|...| .-+.++|.|+|++|..
T Consensus 70 ~~~~f~~a~arN~g~~~A----~~d~l~flD~D~i~~~ 103 (281)
T PF10111_consen 70 NGEPFSRAKARNIGAKYA----RGDYLIFLDADCIPSP 103 (281)
T ss_pred CCCCcCHHHHHHHHHHHc----CCCEEEEEcCCeeeCH
Confidence 456799999999999966 5589999999999943
No 42
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=52.20 E-value=6.7 Score=31.35 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=27.9
Q ss_pred cCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 24 PWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 24 ~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
..++.+ .++||++. .+ .||.|+..|+..+|.++...
T Consensus 168 ~rr~~~~~vgg~~~~--~~-~eD~~l~~rl~~~G~r~~~~ 204 (241)
T cd06427 168 FRTDVLRELGGWDPF--NV-TEDADLGLRLARAGYRTGVL 204 (241)
T ss_pred hhHHHHHHcCCCCcc--cc-hhhHHHHHHHHHCCceEEEe
Confidence 345555 89999873 22 69999999999999888764
No 43
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=45.08 E-value=24 Score=27.10 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=26.1
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCc-cee
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGL-QII 60 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~-~~~ 60 (167)
++-+ ++.||++.+- ...||+|+..|+..+|. ++.
T Consensus 164 r~~~~~~ggf~~~~~-~~~eD~~~~~~~~~~g~~~~~ 199 (229)
T cd04192 164 KEAFFEVGGFEGNDH-IASGDDELLLAKVASKYPKVA 199 (229)
T ss_pred HHHHHHhcCCccccc-cccCCHHHHHHHHHhCCCCEE
Confidence 4444 8999997543 56789999999999998 553
No 44
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=42.68 E-value=21 Score=29.15 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=20.7
Q ss_pred CCCCC-CCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979 33 GFSNE-YWGWGGEDDDMSNRVKAAGLQIIRYP 63 (167)
Q Consensus 33 Gf~n~-~wgwG~ED~d~~~R~~~~g~~~~r~~ 63 (167)
||+++ |-||..-|.|++.+++.+|+++.-.+
T Consensus 160 ~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~~~ 191 (217)
T PF13712_consen 160 RFDEDLFTGFHFYDVDQCLEARRAGYRVVVPP 191 (217)
T ss_dssp ----SS--SSSSHHHHHHHHHHHTT-EEEE--
T ss_pred CCCccccCCcchHHHHHHHHHHHhCCEEEecC
Confidence 89999 99999999999999999999886543
No 45
>PRK10063 putative glycosyl transferase; Provisional
Probab=41.69 E-value=21 Score=29.35 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=31.3
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeec
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSM 71 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~m 71 (167)
...||++.+. -.||.|+..|+..+|.++..-+..+.+|.|
T Consensus 158 ~~~~fd~~~~--~~~Dydl~lrl~~~g~~~~~v~~~l~~y~~ 197 (248)
T PRK10063 158 KKWRYDLQYK--VSSDYALAARLYKAGYAFKKLNGLVSEFSM 197 (248)
T ss_pred hcCCCCcccc--hHHhHHHHHHHHHcCCcEEEcCceeEEEeC
Confidence 4567887663 358999999999999988887777777765
No 46
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=35.23 E-value=16 Score=31.93 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=28.3
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
++.. +++||++.+.- -.||.++..|++++|.++.-.
T Consensus 218 r~~~~~vGGf~~~~~~-~~ED~~L~~r~~~~G~~v~~~ 254 (384)
T TIGR03469 218 REALERIGGIAAIRGA-LIDDCTLAAAVKRSGGRIWLG 254 (384)
T ss_pred HHHHHHcCCHHHHhhC-cccHHHHHHHHHHcCCcEEEE
Confidence 5555 89999875544 369999999999999877653
No 47
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=33.32 E-value=13 Score=32.34 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=28.5
Q ss_pred CCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979 25 WDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 63 (167)
Q Consensus 25 ~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~ 63 (167)
.++.+ +++||++..- --.||.++..|+..+|.++.-.+
T Consensus 208 RR~~l~~iGGf~~~~~-~~~ED~~l~~~i~~~G~~v~~~~ 246 (373)
T TIGR03472 208 RRATLEAIGGLAALAH-HLADDYWLGELVRALGLRVVLAP 246 (373)
T ss_pred eHHHHHHcCChHHhcc-cchHHHHHHHHHHHcCCeEEecc
Confidence 35555 8999986322 22599999999999999997643
No 48
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=33.09 E-value=28 Score=23.86 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=22.9
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcc
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQ 58 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~ 58 (167)
+++|+++.+.+| +||.++..++...|-.
T Consensus 126 ~~~~~~~~~~~~-~ed~~~~~~~~~~g~~ 153 (156)
T cd00761 126 EIGGFDEALLSG-EEDDDFLLRLLRGGKV 153 (156)
T ss_pred HhCCcchHhcCC-cchHHHHHHHHhhccc
Confidence 899999877544 9999999999988744
No 49
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=31.09 E-value=18 Score=25.83 Aligned_cols=14 Identities=29% Similarity=1.175 Sum_probs=10.9
Q ss_pred cCCCCCCCCCCCCC
Q psy6979 31 VNGFSNEYWGWGGE 44 (167)
Q Consensus 31 vNGf~n~~wgwG~E 44 (167)
.--|+..||+||..
T Consensus 52 AaAYPsv~waWGSN 65 (84)
T PF07312_consen 52 AAAYPSVYWAWGSN 65 (84)
T ss_pred cccCcceeeeeccC
Confidence 34588899999965
No 50
>PRK10018 putative glycosyl transferase; Provisional
Probab=29.81 E-value=66 Score=27.17 Aligned_cols=40 Identities=13% Similarity=-0.021 Sum_probs=27.7
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeec
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSM 71 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~m 71 (167)
...||++.+- ..||.|+..|+...|-.....++..+.|+.
T Consensus 168 ~~~~fd~~~~--~~eDydlwlrl~~~~~~~~~~~~~l~~y~~ 207 (279)
T PRK10018 168 KECLFDTELK--AAQDYDIFLRMVVEYGEPWKVEEATQILHI 207 (279)
T ss_pred hhcccCCCCC--ccccHHHHHHHHHhcCceEeeccceEEEEc
Confidence 4457877655 579999999998887666655454455544
No 51
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=29.14 E-value=67 Score=27.71 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=26.9
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCC
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPD 65 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~ 65 (167)
+++|+++... .||.++..|+..+|+++...+..
T Consensus 228 ~~g~~~~~~i---~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 228 EVGGWLEDTI---TEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred HhCCCCCCce---eccHHHHHHHHHCCCeEEEeecc
Confidence 7888877544 79999999999999999875443
No 52
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=28.41 E-value=58 Score=31.30 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=27.7
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
++.+ +|+||++..- .||.|++.|+..+|.++...
T Consensus 316 R~al~~iGGf~~~~v---tED~~l~~rL~~~G~~~~y~ 350 (713)
T TIGR03030 316 REALDEIGGIAGETV---TEDAETALKLHRRGWNSAYL 350 (713)
T ss_pred HHHHHHcCCCCCCCc---CcHHHHHHHHHHcCCeEEEe
Confidence 4445 8999997653 79999999999999997654
No 53
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=25.31 E-value=65 Score=26.77 Aligned_cols=41 Identities=12% Similarity=-0.048 Sum_probs=29.8
Q ss_pred CCCc-ccCCCCC--CCCCCC----CCChHHHHHHHhcCcceeeCCCCc
Q psy6979 26 DKDQ-LVNGFSN--EYWGWG----GEDDDMSNRVKAAGLQIIRYPPDI 66 (167)
Q Consensus 26 ~~~~-~vNGf~n--~~wgwG----~ED~d~~~R~~~~g~~~~r~~~~i 66 (167)
++.+ .+.|++. ++-+|+ .||.+++.|+..+|.++.-.+..+
T Consensus 180 r~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~ 227 (254)
T cd04191 180 VAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLE 227 (254)
T ss_pred HHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCc
Confidence 4444 7777763 566785 589999999999999887654433
No 54
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=23.36 E-value=74 Score=28.43 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=26.8
Q ss_pred cCCCCc-ccCCCCCCCCCCCCCChHHHHHHHh-cCcceeeCCC
Q psy6979 24 PWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKA-AGLQIIRYPP 64 (167)
Q Consensus 24 ~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~-~g~~~~r~~~ 64 (167)
..++.+ +++||++.. -+||.|+..|++. +|.++.-.+.
T Consensus 222 ~Rr~~l~~vggf~~~~---i~ED~~l~~rl~~~~g~kv~~~~~ 261 (439)
T TIGR03111 222 FRRETILKTQLYNSET---VGEDTDMTFQIRELLDGKVYLCEN 261 (439)
T ss_pred hhHHHHHHhCCCCCCC---cCccHHHHHHHHHhcCCeEEECCC
Confidence 334445 899998765 3899999999964 5766665433
No 55
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=22.84 E-value=51 Score=32.79 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=27.7
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
++.+ +|+||+++. -.||.|++.|+..+|.++.-.
T Consensus 427 ReaLeeVGGfd~~t---itED~dlslRL~~~Gyrv~yl 461 (852)
T PRK11498 427 RKPLDEIGGIAVET---VTEDAHTSLRLHRRGYTSAYM 461 (852)
T ss_pred HHHHHHhcCCCCCc---cCccHHHHHHHHHcCCEEEEE
Confidence 4444 899999864 369999999999999988753
Done!