Query psy6979
Match_columns 167
No_of_seqs 191 out of 551
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:40:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lw6_A FI08434P, beta-4-galact 99.9 9.9E-26 3.4E-30 190.6 3.2 84 79-166 80-165 (287)
2 3lw6_A FI08434P, beta-4-galact 99.8 2.8E-20 9.7E-25 157.3 -0.9 105 8-117 154-267 (287)
3 2fy7_A Beta-1,4-galactosyltran 99.6 7.2E-17 2.5E-21 135.7 -1.1 101 25-126 182-284 (287)
4 2fy7_A Beta-1,4-galactosyltran 98.9 1.2E-09 4E-14 91.6 5.0 86 81-166 96-181 (287)
5 2z86_A Chondroitin synthase; G 95.5 0.0055 1.9E-07 54.7 2.3 38 26-63 285-323 (625)
6 1xhb_A Polypeptide N-acetylgal 95.0 0.0079 2.7E-07 51.9 1.9 37 26-62 213-250 (472)
7 2d7i_A Polypeptide N-acetylgal 94.4 0.0095 3.3E-07 53.4 0.8 37 26-62 293-330 (570)
8 2nxv_A ATP synthase subunits r 94.2 0.033 1.1E-06 44.2 3.7 32 31-62 165-196 (249)
9 2ffu_A Ppgalnact-2, polypeptid 93.5 0.018 6E-07 50.3 0.8 37 26-62 245-282 (501)
10 3bcv_A Putative glycosyltransf 87.1 0.31 1.1E-05 37.0 2.4 43 26-69 180-224 (240)
11 4fix_A UDP-galactofuranosyl tr 67.0 2.3 7.8E-05 39.0 2.0 36 26-63 374-410 (657)
12 2z86_A Chondroitin synthase; G 60.6 2.9 9.8E-05 37.0 1.3 30 30-62 535-564 (625)
13 1qg8_A Protein (spore coat pol 44.0 1.9 6.5E-05 32.9 -2.3 34 26-62 165-206 (255)
14 1gwm_A NCP1, non-catalytic pro 38.4 10 0.00035 28.2 1.0 19 23-43 10-28 (153)
15 1wcu_A CBM29_1, non-catalytic 36.1 12 0.0004 27.9 1.0 17 24-42 10-26 (153)
16 4hg6_A Cellulose synthase subu 30.4 17 0.00059 33.7 1.4 36 26-64 326-362 (802)
17 3l7i_A Teichoic acid biosynthe 21.3 20 0.00068 32.5 0.0 35 26-62 161-197 (729)
No 1
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=99.91 E-value=9.9e-26 Score=190.60 Aligned_cols=84 Identities=32% Similarity=0.556 Sum_probs=77.5
Q ss_pred CCCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCC--cceeeeeecccccccCCC
Q psy6979 79 ANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPG--MPRHMSVAVDSMNYRLPY 156 (167)
Q Consensus 79 ~Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~--~p~Hls~~~~~~~y~~~y 156 (167)
+..++.|++++|.++.+||||+|||+||.||. ..+||++||||||+||||+|+|.|++ +|+|+|++ +|+|++||
T Consensus 80 Q~l~y~I~VieQ~~~~~FNRa~LlNvGf~ea~--~~~d~~ifHDVDLlP~dd~n~Y~c~~~~~P~Hls~~--~~~~~~~Y 155 (287)
T 3lw6_A 80 QGVAHHIFVLNQVDRFRFNRASLINVGFQFAS--DVYDYIAMHDVDLLPLNDNLLYEYPSSLGPLHIAGP--KLHPKYHY 155 (287)
T ss_dssp TTCEEEEEEEEECSSSCCCHHHHHHHHHHHSC--TTCCEEEEECTTEEECCTTSCCCCCCTTCCEESSCT--TTCSSCCC
T ss_pred cCCceEEEEEecCCCCccchhheecccHHHHh--ccCCEEEEecccccccCCCccccCCCCCCceEEeec--cccCCCCc
Confidence 44556799999999999999999999999985 47899999999999999999999997 89999974 89999999
Q ss_pred Ccceeeeeee
Q psy6979 157 ASLFGGVSNI 166 (167)
Q Consensus 157 ~~~~GGv~~~ 166 (167)
..+||||+++
T Consensus 156 ~~~~GGv~a~ 165 (287)
T 3lw6_A 156 DNFVGGILLV 165 (287)
T ss_dssp TTCCCSEEEE
T ss_pred CCccccEEec
Confidence 9999999987
No 2
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=99.76 E-value=2.8e-20 Score=157.28 Aligned_cols=105 Identities=26% Similarity=0.408 Sum_probs=79.0
Q ss_pred ceeEEeeeceeeEeeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC-CceeeeccccccccCCCCCC-
Q psy6979 8 DYTIFIIEQEVEVPTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP-DIAKYSMLRHRKEKANPQSS- 84 (167)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~-~i~rY~ml~H~~d~~Npq~~- 84 (167)
+|.+|+- |++++. +++. +||||||.|||||+||+||..|+..+|+++.|++. .++||+|++|.|++.+++++
T Consensus 154 ~Y~~~~G-Gv~a~~----re~f~kVNGFsn~f~GWGgEDdD~~~Rl~~~G~~i~Rp~~~~~gry~m~~H~hd~~~r~rd~ 228 (287)
T 3lw6_A 154 HYDNFVG-GILLVR----REHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKRDT 228 (287)
T ss_dssp CCTTCCC-SEEEEE----HHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCSSCCCCTTTSEEECCCTTTSCCCC
T ss_pred CcCCccc-cEEecc----HHHHHHcCCCCCcCcCCCccchHHHHHHHHcCCcEEcCCCccccceeEEeccccccccCCcc
Confidence 5555555 666665 7777 99999999999999999999999999999999986 69999999999887654432
Q ss_pred -ccccccc-CCcccccccchhhhHHH----HHhhCCcCe
Q psy6979 85 -FFPHSIS-EGHPFNRASLFNVGYAE----AIKIREFDC 117 (167)
Q Consensus 85 -~~v~~q~-~~~~fNR~~LlNvg~~e----al~~~~~~~ 117 (167)
.+...+. ...++..++|.|+.|.. .+++.+.||
T Consensus 229 ~k~~~~~~~~~~r~~~dGLnsl~Y~v~s~~~~~i~~~~~ 267 (287)
T 3lw6_A 229 QKCFNQKEMTRKRDHKTGLDNVKYKILKVHEMLIDQVPV 267 (287)
T ss_dssp CCCTTHHHHHTSCCSSCSGGGCCEEEEEEEEEEETTEEE
T ss_pred cchhhhhhhhcEEccCCCCeeeEEEEEEEEEEEecCCCc
Confidence 2333322 45667777888887762 223455565
No 3
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=99.58 E-value=7.2e-17 Score=135.73 Aligned_cols=101 Identities=28% Similarity=0.522 Sum_probs=76.6
Q ss_pred CCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeeccccccccCCCCCCcccccccC-Ccccccccch
Q psy6979 25 WDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISE-GHPFNRASLF 102 (167)
Q Consensus 25 ~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H~~d~~Npq~~~~v~~q~~-~~~fNR~~Ll 102 (167)
+++++ +||||++.|+|||+||.||..|+..+|+++.|++...++|.|+.|.++..+.+++.+...+.. ..++.++++.
T Consensus 182 rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~ 261 (287)
T 2fy7_A 182 SKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLN 261 (287)
T ss_dssp EHHHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGG
T ss_pred EHHHHHHcCCCCccccccccchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcc
Confidence 37777 999999999999999999999999999999998877899999999988765555554554443 4556677766
Q ss_pred hhhHHHHHhhCCcCeEEEEeeccc
Q psy6979 103 NVGYAEAIKIREFDCFIFHDVDLI 126 (167)
Q Consensus 103 Nvg~~eal~~~~~~~~~~hdVDLl 126 (167)
++.|. .++....++||++.||+-
T Consensus 262 ~~~y~-~~~~~~~~l~t~~~v~~~ 284 (287)
T 2fy7_A 262 SLTYQ-VLDVQRYPLYTQITVDIG 284 (287)
T ss_dssp GCCCE-EEEEEEETTEEEEEEECC
T ss_pred cCceE-EEEEEeccCeEEEEEEec
Confidence 66665 667889999999999994
No 4
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.89 E-value=1.2e-09 Score=91.64 Aligned_cols=86 Identities=45% Similarity=0.861 Sum_probs=77.7
Q ss_pred CCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCCcceeeeeecccccccCCCCcce
Q psy6979 81 PQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLF 160 (167)
Q Consensus 81 pq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~~p~Hls~~~~~~~y~~~y~~~~ 160 (167)
+.+.+.++.++.+..|+++..+|.|+.++++....++++|+|+|.+|+.+.+.|.|...|+|++..+++++|++||..++
T Consensus 96 ~~~EIiVVdds~d~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 175 (287)
T 2fy7_A 96 LDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYF 175 (287)
T ss_dssp CEEEEEEEEECSSSCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCCSCCSSCEECCCEEGGGTTSCSSTTCC
T ss_pred CCceEEEEEeCCCCccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCcceEecCCCCceEEEeecccccCCCcCcee
Confidence 44556777777778899999999999888877889999999999999999999999999999999999999999999999
Q ss_pred eeeeee
Q psy6979 161 GGVSNI 166 (167)
Q Consensus 161 GGv~~~ 166 (167)
||++++
T Consensus 176 G~~~~~ 181 (287)
T 2fy7_A 176 GGVSAL 181 (287)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 999876
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=95.45 E-value=0.0055 Score=54.70 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=33.8
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 63 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~ 63 (167)
++.+ +++||++.|..||+||.|+..|+..+|.++...+
T Consensus 285 r~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 323 (625)
T 2z86_A 285 KKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVE 323 (625)
T ss_dssp THHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECG
T ss_pred HHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcc
Confidence 6666 8999999999999999999999999999887643
No 6
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=95.04 E-value=0.0079 Score=51.93 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=32.9
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
++.+ +++||++.|..||+||.||..|+..+|.++...
T Consensus 213 r~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~ 250 (472)
T 1xhb_A 213 RDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIV 250 (472)
T ss_dssp HHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEc
Confidence 4445 899999999999999999999999999988764
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=94.37 E-value=0.0095 Score=53.42 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=33.0
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
++.+ +|+||++.|..||+||.||..|+..+|.++...
T Consensus 293 r~~~~~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~ 330 (570)
T 2d7i_A 293 RKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDI 330 (570)
T ss_dssp HHHHHHTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCCCCcccccCcchHHHHHHHHhCCCeEEEc
Confidence 4445 899999999999999999999999999998764
No 8
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=94.24 E-value=0.033 Score=44.24 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=29.4
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 31 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 31 vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
++||++.+-||..||.|+..|++.+|.++...
T Consensus 165 ~~gFDe~~~~~~~~D~Dl~~R~~~~G~~~~~~ 196 (249)
T 2nxv_A 165 PVLNSYDMQGFHYYGADLCLQAEFLGGRAYAI 196 (249)
T ss_dssp CCCCCSSCCSSSSHHHHHHHHHHHTTCEEEEC
T ss_pred hCCCCCCCCCcceehhHHHHHHHHcCCeEEEe
Confidence 78999999999999999999999999988765
No 9
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=93.50 E-value=0.018 Score=50.34 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
++.+ +|+||++.|..||+||.||..|+..+|.++...
T Consensus 245 r~~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~ 282 (501)
T 2ffu_A 245 KFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEII 282 (501)
T ss_dssp HHHHHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhCCCCccccccCcchHHHHHHHHhcCCeEEEc
Confidence 4445 899999999999999999999999999988764
No 10
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=87.05 E-value=0.31 Score=37.04 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=29.4
Q ss_pred CCCc-ccC-CCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceee
Q psy6979 26 DKDQ-LVN-GFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKY 69 (167)
Q Consensus 26 ~~~~-~vN-Gf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY 69 (167)
++.+ +++ ||++.+. +.+||.|+..|+..+|.++...+..+..|
T Consensus 180 r~~~~~~g~~f~~~~~-~~~eD~~~~~r~~~~g~~i~~~~~~~~~y 224 (240)
T 3bcv_A 180 RNLIEKKHLRFVSERI-LPSEDLIFNVDVLANSNIVCVLPQTFYNY 224 (240)
T ss_dssp HHHHHHTTCCCCCTTT-CTTHHHHHHHHHHTTCSCEEECC------
T ss_pred HHHHHHcCCccCCCCC-ccCCCHHHHHHHHHhCCEEEEECCCeEEE
Confidence 3344 788 9999865 34599999999999999888765544444
No 11
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=67.02 E-value=2.3 Score=39.00 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=28.4
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 63 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~ 63 (167)
++.+ +|+||++.|-.| ||.|+..|+..+|.++...+
T Consensus 374 r~v~~~vGgfd~~F~~~--ED~Dl~lR~~~~G~ki~~~p 410 (657)
T 4fix_A 374 RQVAEELGQPLPLFIKW--DDADYGLRAAEHGYPTVTLP 410 (657)
T ss_dssp HHHHHHHCSCCSCSSSS--HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhCCChhHhccC--cHHHHHHHHHHcCCeEEEEC
Confidence 4444 899999655544 99999999999999887643
No 12
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=60.56 E-value=2.9 Score=36.99 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.6
Q ss_pred ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
+++||++.|. +.||.|+..|+..+| ++...
T Consensus 535 ~~ggfd~~~~--~~eD~dl~~r~~~~g-~~~~~ 564 (625)
T 2z86_A 535 LTEGFNESIS--NAVDYDMYLKLSEVG-PFKHI 564 (625)
T ss_dssp TTTCCCSSCS--SCHHHHHHHHHTTTS-CEEEE
T ss_pred HhCCCCCccC--ChHHHHHHHHHHHhC-CEEEe
Confidence 7999999987 569999999999999 66553
No 13
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=44.04 E-value=1.9 Score=32.94 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=24.2
Q ss_pred CCCc-ccC-CC------CCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 26 DKDQ-LVN-GF------SNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 26 ~~~~-~vN-Gf------~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
++.+ +++ || ++.+ +++||.|+..|+..+| ++...
T Consensus 165 r~~~~~~g~~f~~~~~~~~~~--~~~eD~~~~~r~~~~g-~~~~~ 206 (255)
T 1qg8_A 165 YSVLEKVKEKFGSYWDESPAF--YRIGDARFFWRVNHFY-PFYPL 206 (255)
T ss_dssp THHHHHHHHHHSSSSCCCGGG--STTHHHHHHHHHTTTC-CBEEE
T ss_pred HHHHHhhcccccccccCCccc--chHHHHHHHHHHHHhC-CEEEe
Confidence 4444 677 78 4444 5789999999999987 45443
No 14
>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19 PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A 1w8z_A 1w9f_A 1oh3_A*
Probab=38.42 E-value=10 Score=28.23 Aligned_cols=19 Identities=42% Similarity=1.029 Sum_probs=12.4
Q ss_pred ecCCCCcccCCCCCCCCCCCC
Q psy6979 23 VPWDKDQLVNGFSNEYWGWGG 43 (167)
Q Consensus 23 ~~~~~~~~vNGf~n~~wgwG~ 43 (167)
++-+.-..-|||+| ||||.
T Consensus 10 i~~~~~~L~~G~DN--WGW~~ 28 (153)
T 1gwm_A 10 IFKNASGLPNGYDN--WGWGC 28 (153)
T ss_dssp EESSCSSSCTTEEE--CCBSE
T ss_pred EEeccCcCCCCccc--cccCc
Confidence 33344446788887 99963
No 15
>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi}
Probab=36.05 E-value=12 Score=27.90 Aligned_cols=17 Identities=41% Similarity=0.964 Sum_probs=11.5
Q ss_pred cCCCCcccCCCCCCCCCCC
Q psy6979 24 PWDKDQLVNGFSNEYWGWG 42 (167)
Q Consensus 24 ~~~~~~~vNGf~n~~wgwG 42 (167)
+-+.-..-|||+| ||||
T Consensus 10 ~~~~~~L~~G~DN--WGW~ 26 (153)
T 1wcu_A 10 YETGKKLNSGFDN--WGWD 26 (153)
T ss_dssp ECSSSSCCTTEEE--CCBS
T ss_pred EeccCcCCCCccc--cccC
Confidence 3344446788887 9996
No 16
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=30.40 E-value=17 Score=33.73 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=28.7
Q ss_pred CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979 26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 64 (167)
Q Consensus 26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~ 64 (167)
++.+ +++||++... +||.|+..|+..+|.++...+.
T Consensus 326 r~al~~vGgf~~~~~---~ED~~l~~rl~~~G~ri~~~~~ 362 (802)
T 4hg6_A 326 RRALDEAGGFAGETI---TEDAETALEIHSRGWKSLYIDR 362 (802)
T ss_dssp HHHHHHHTTCCCSSS---SHHHHHHHHHHTTTCCEEECCC
T ss_pred HHHHHHcCCcCCCCc---chHHHHHHHHHHcCCeEEEecC
Confidence 4444 8999998765 3999999999999998876543
No 17
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=21.32 E-value=20 Score=32.52 Aligned_cols=35 Identities=9% Similarity=-0.125 Sum_probs=0.0
Q ss_pred CCCc-ccC-CCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979 26 DKDQ-LVN-GFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 62 (167)
Q Consensus 26 ~~~~-~vN-Gf~n~~wgwG~ED~d~~~R~~~~g~~~~r~ 62 (167)
++.+ +++ ||++.+. .+||.|+..|+..+|.++...
T Consensus 161 r~~l~~~gl~fde~~~--~~ED~d~~~rl~~~g~~i~~~ 197 (729)
T 3l7i_A 161 TAIVRAHHIRFNENLN--TYVDWSFVLEYMKYVNKFVRI 197 (729)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHcCCCcCCCCC--cccCHHHHHHHHHhcCCEEEe
Confidence 4444 677 8999874 379999999999999888765
Done!