RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6979
(167 letters)
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 73.8 bits (180), Expect = 2e-16
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 71 MLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 130
+ + + + + + FNRA L NVG+ EA+K ++ CF+F DVDLIP +D
Sbjct: 87 LHPVLQRQQLDYGIYVINQAGDT-IFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMND 145
Query: 131 RNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNI 166
N Y C PRH+SVA+D + LPY FGGVS +
Sbjct: 146 HNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSAL 181
Score = 59.5 bits (143), Expect = 2e-11
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 29 QLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPH 88
+NGF N YWGWGGEDDD+ NR+ G+ I R + +RH ++K N +
Sbjct: 187 LTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFD 246
Query: 89 SISEGH 94
I+
Sbjct: 247 RIAHTK 252
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 64.4 bits (156), Expect = 3e-13
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 29 QLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR-YPPDIAKYSMLRHRKEKANPQ 82
+ +NG SN+YWGWG EDD+ R++ AGLQ+ R H + + +
Sbjct: 171 KQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRK 225
Score = 63.3 bits (153), Expect = 1e-12
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 71 MLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 130
M K + F + + FNRASL NVG+ A +D HDVDL+P +D
Sbjct: 73 MTAFLKRQGVAHHIFVLNQVDRF-RFNRASLINVGFQFASD--VYDYIAMHDVDLLPLND 129
Query: 131 RNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNI 166
LY P + +A ++ + Y + GG+ +
Sbjct: 130 NLLYEYPSSLGPLHIAGPKLHPKYHYDNFVGGILLV 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 40/137 (29%)
Query: 51 RVKA-AGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEA 109
+ KA +GL R P + K + F P ++ PF+ L A
Sbjct: 395 KAKAPSGLDQSRIP----------FSERKLKFSNRFLP--VAS--PFHSHLL-----VPA 435
Query: 110 IKIREFDC----FIFHDVDL-IP----EDDRNLYTCPGM--PRH----MSVAVD---SMN 151
+ D F+ D+ IP D +L G R + + V +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 152 YRLPYASLFG--GVSNI 166
++ + FG G S +
Sbjct: 496 FKATHILDFGPGGASGL 512
Score = 36.6 bits (84), Expect = 0.002
Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 78/193 (40%)
Query: 14 IEQEVEVPTVPWDK-DQLVNGF-------SNEYWGWGGEDDDMSNRVKAAGLQIIRYPPD 65
+E + VPT + QL F + + +D+ + A L
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFA---ADDEPTTP----AEL-------- 60
Query: 66 IAKY-SMLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIK--IREFD-CFIF- 120
+ K+ + E + + + + + EF+ C++
Sbjct: 61 VGKFLGYVSSLVEPSKVGQ----------------------FDQVLNLCLTEFENCYLEG 98
Query: 121 ---HDV--DLIPEDD----------RNLYTC------PGMPRHMSV---AVDSMNYRLPY 156
H + L+ E+D +N T P + S AV N +L
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-V 157
Query: 157 ASLFGG--VSNIY 167
A +FGG ++ Y
Sbjct: 158 A-IFGGQGNTDDY 169
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 29.5 bits (66), Expect = 0.56
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 5/104 (4%)
Query: 31 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSI 90
F E+ WGGED++ R+ G +M H++ +
Sbjct: 291 AGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVEG-----AMAYHQEPPGKENETDRAAGK 345
Query: 91 SEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLY 134
+ + + + + IP + + Y
Sbjct: 346 NITVQLLQQKVPYFYRKKEKIESATLKRVPLVSIYIPAYNCSKY 389
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans;
5-methyltetrahydrofolate,methyltransferase, TIM barrel,
STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A
{Bacteroides thetaiotaomicron}
Length = 300
Score = 28.7 bits (65), Expect = 0.78
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 122 DVDLIPED---DRNLYT-CPGMPRHMSVAVDSMN------YRLPYASLFGGVSNI 166
V P D D N+ G+ H + AVD + LP A + GGVSN+
Sbjct: 167 KVGFNPHDIIFDPNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNL 221
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 28.5 bits (63), Expect = 1.3
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 33 GFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFF 86
G + +D D R G + P A + M K+ A ++F
Sbjct: 381 GQPLPLFIKW-DDADYGLRAAEHGYPTV-TLPGAAIWHMAWSDKDDAIDWQAYF 432
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 27.4 bits (60), Expect = 2.3
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 33 GFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSS 84
+ WGGE+ ++S RV G + P S + H K +P +
Sbjct: 253 KYDMMMDVWGGENLEISFRVWQCGGSLEIIP-----CSRVGHVFRKQHPYTF 299
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural
genomics consortium, SGC, signaling protein; 2.26A
{Homo sapiens}
Length = 111
Score = 26.0 bits (57), Expect = 4.3
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 2 LVRQQIDY---TIFIIEQEVEVPTVP 24
L+ ++Y T+ +I Q+ V +P
Sbjct: 2 LLGDDVEYAPLTVSVIVQDEGVDAIP 27
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 26.3 bits (57), Expect = 5.6
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 4 RQQIDYTIFIIEQEVEVPTVPWDKDQL--VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR 61
R++ D T+ + + D+D + + WGGE+ ++S R+ G +
Sbjct: 190 RRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGT-LE 248
Query: 62 YPPDIAKYSMLRHRKEKANP 81
S + H KA P
Sbjct: 249 IVTC----SHVGHVFRKATP 264
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 7.2
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 68 KYSMLRHRKEKANPQS-SFFPHSISEGHPFNRASLF-NVGYAEAIKIREFDCFIFHDVDL 125
+ L NP+ S SI +G + +V + I E +V L
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNCDKLTTIIE----SSLNV-L 366
Query: 126 IPEDDRNLY 134
P + R ++
Sbjct: 367 EPAEYRKMF 375
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 26.0 bits (56), Expect = 7.6
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 31 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 63
+ G+ WGGE ++S +V G ++ P
Sbjct: 299 LGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIP 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.440
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,746,617
Number of extensions: 158184
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 19
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)