RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6979
         (167 letters)



>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score = 85.1 bits (210), Expect = 4e-21
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query: 95  PFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRL 154
            FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + L
Sbjct: 94  MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 153

Query: 155 PYASLFGGVSNIY 167
           PY   FGGVS + 
Sbjct: 154 PYVQYFGGVSALS 166



 Score = 71.2 bits (174), Expect = 4e-16
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 29  QLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANP 81
             +NGF N YWG GGEDDD+ NR+   G+ + R    I K  M+RH ++K N 
Sbjct: 171 LSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNE 223



 Score = 24.6 bits (53), Expect = 6.1
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 1   MLVRQQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVK---AAGL 57
           +L RQQ+DY I++I Q        +++ +L+N    E       +  + + V        
Sbjct: 74  ILQRQQLDYGIYVINQ---AGESMFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDH 130

Query: 58  QIIRYPPDIAKYSMLRHRKEKANPQSSFF 86
              R        S+   +   + P   +F
Sbjct: 131 NTYRCFSQPRHISVAMDKFGFSLPYVQYF 159


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 32.6 bits (73), Expect = 0.015
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 31  VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSS 84
           +  +      WGGE+ ++S R+   G  +          S + H   KA P + 
Sbjct: 212 IGTYDAGMDIWGGENLEISFRIWQCGGTLEIVT-----CSHVGHVFRKATPYTF 260


>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp.
           Thermophilus [TaxId: 271]}
          Length = 387

 Score = 29.2 bits (65), Expect = 0.26
 Identities = 9/33 (27%), Positives = 10/33 (30%)

Query: 98  RASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 130
           R  L  V     +          HD DLIP   
Sbjct: 30  RERLDPVYVVHKLAELGAYGVNLHDEDLIPRGT 62


>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
           missouriensis [TaxId: 1866]}
          Length = 392

 Score = 28.4 bits (63), Expect = 0.44
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 98  RASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 130
           R +L  V     +         FHD DL+P   
Sbjct: 29  RTALDPVEAVHKLAEIGAYGITFHDDDLVPFGS 61


>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
           b3728 [TaxId: 1663]}
          Length = 393

 Score = 27.7 bits (61), Expect = 0.83
 Identities = 8/16 (50%), Positives = 8/16 (50%)

Query: 115 FDCFIFHDVDLIPEDD 130
                FHD DLIP D 
Sbjct: 46  AYGITFHDNDLIPFDA 61


>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
           olivochromogenes [TaxId: 1963]}
          Length = 386

 Score = 27.2 bits (60), Expect = 0.90
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 95  PF---NRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 130
           PF    R +L  V   + +         FHD DLIP   
Sbjct: 24  PFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIPFGS 62


>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 317

 Score = 25.9 bits (55), Expect = 2.7
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 7   IDYTIFIIEQEVEVPTVPWDKDQLVN-GFSNEYWGWGGEDDDMSNR----VKAAGLQIIR 61
            D+ +     +     +     +        E+ G  G+   MS      +  + L    
Sbjct: 236 KDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDL-YEV 294

Query: 62  YPPDIAKYSMLRHRKEK 78
             P + ++   RHR  K
Sbjct: 295 LEPGLVRFIYARHRPNK 311


>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii
           [TaxId: 1474]}
          Length = 122

 Score = 25.1 bits (55), Expect = 3.3
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 16  QEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAG 56
           +E+EV       ++ V G S+   G     + +  R K  G
Sbjct: 77  EEMEVELTELGGNREVFGISDLTNGSVDNKELILQRAKELG 117


>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio fructosovorans [TaxId: 878]}
          Length = 261

 Score = 24.5 bits (53), Expect = 7.5
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 124 DLIPEDDRNLYTCPGMPRHMSVAVDSM-NYRLP 155
           + +     N+  CP  P +   AV  +    +P
Sbjct: 132 EALGVKTINIPGCPPNPINFVGAVVHVLTKGIP 164


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 682,139
Number of extensions: 30848
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 15
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)